Multiple sequence alignment - TraesCS6D01G246900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G246900 chr6D 100.000 4791 0 0 1 4791 349990890 349986100 0.000000e+00 8848.0
1 TraesCS6D01G246900 chr6D 97.115 208 5 1 1 207 428787100 428786893 2.740000e-92 350.0
2 TraesCS6D01G246900 chr6D 92.308 156 9 3 2304 2457 303060007 303059853 8.070000e-53 219.0
3 TraesCS6D01G246900 chr6A 96.392 2134 43 8 2049 4168 494441417 494443530 0.000000e+00 3483.0
4 TraesCS6D01G246900 chr6A 90.805 1044 49 16 469 1507 494439779 494440780 0.000000e+00 1352.0
5 TraesCS6D01G246900 chr6A 93.393 560 12 6 1509 2063 494440855 494441394 0.000000e+00 806.0
6 TraesCS6D01G246900 chr6A 85.317 504 29 16 4305 4788 494444133 494444611 3.350000e-131 479.0
7 TraesCS6D01G246900 chr6A 87.008 254 18 10 199 449 494424014 494424255 6.110000e-69 272.0
8 TraesCS6D01G246900 chr6A 84.762 105 7 4 4202 4297 494443764 494443868 3.950000e-16 97.1
9 TraesCS6D01G246900 chr6B 90.584 2347 81 58 469 2754 530127146 530129413 0.000000e+00 2981.0
10 TraesCS6D01G246900 chr6B 94.759 935 40 2 2751 3684 530129525 530130451 0.000000e+00 1447.0
11 TraesCS6D01G246900 chr6B 93.197 441 16 4 3714 4153 530130452 530130879 1.880000e-178 636.0
12 TraesCS6D01G246900 chr6B 91.667 276 16 4 199 468 530126695 530126969 4.530000e-100 375.0
13 TraesCS6D01G246900 chrUn 97.990 199 4 0 1 199 380783105 380783303 3.550000e-91 346.0
14 TraesCS6D01G246900 chr7D 97.087 206 4 2 1 204 371766737 371766532 3.550000e-91 346.0
15 TraesCS6D01G246900 chr7D 96.635 208 6 1 1 207 516887955 516887748 1.280000e-90 344.0
16 TraesCS6D01G246900 chr7D 91.613 155 13 0 2304 2458 454079230 454079076 1.040000e-51 215.0
17 TraesCS6D01G246900 chr3D 97.073 205 6 0 1 205 526116037 526115833 3.550000e-91 346.0
18 TraesCS6D01G246900 chr3D 96.635 208 6 1 1 207 202261222 202261429 1.280000e-90 344.0
19 TraesCS6D01G246900 chr2D 97.087 206 5 1 1 205 64664360 64664155 3.550000e-91 346.0
20 TraesCS6D01G246900 chr2D 89.349 169 14 3 2292 2457 79056334 79056167 4.860000e-50 209.0
21 TraesCS6D01G246900 chr4D 96.618 207 7 0 1 207 471484357 471484151 1.280000e-90 344.0
22 TraesCS6D01G246900 chr4D 92.903 155 11 0 2304 2458 74079504 74079350 4.820000e-55 226.0
23 TraesCS6D01G246900 chr1D 96.190 210 7 1 1 209 219737053 219736844 4.590000e-90 342.0
24 TraesCS6D01G246900 chr1B 83.113 379 44 8 1094 1456 654080984 654080610 1.290000e-85 327.0
25 TraesCS6D01G246900 chr1A 92.208 154 12 0 2304 2457 155857859 155857706 8.070000e-53 219.0
26 TraesCS6D01G246900 chr5D 91.139 158 14 0 2304 2461 175300057 175299900 1.040000e-51 215.0
27 TraesCS6D01G246900 chr2A 89.941 169 13 3 2292 2457 79316172 79316005 1.040000e-51 215.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G246900 chr6D 349986100 349990890 4790 True 8848.00 8848 100.00000 1 4791 1 chr6D.!!$R2 4790
1 TraesCS6D01G246900 chr6A 494439779 494444611 4832 False 1243.42 3483 90.13380 469 4788 5 chr6A.!!$F2 4319
2 TraesCS6D01G246900 chr6B 530126695 530130879 4184 False 1359.75 2981 92.55175 199 4153 4 chr6B.!!$F1 3954

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
193 194 0.109272 ATATAGCCGCATCGTGGACG 60.109 55.000 0.0 0.0 34.74 4.79 F
956 1144 0.594110 TTCGACGGGGATTTTGTTGC 59.406 50.000 0.0 0.0 0.00 4.17 F
2133 2483 1.205893 GCACTTTTTGGTCCCACACAA 59.794 47.619 0.0 0.0 0.00 3.33 F
2190 2549 6.648725 GCAAAAATTAAGGTGCCTATGAACAA 59.351 34.615 0.0 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1119 1307 1.150567 GATACAGCACGGCAGCTCTG 61.151 60.000 0.00 4.81 44.54 3.35 R
2190 2549 3.138304 TGCGCTGAAGAACTAAATGTGT 58.862 40.909 9.73 0.00 0.00 3.72 R
2981 3457 2.026356 TGAGTGGGGTGGATGTACAATG 60.026 50.000 0.00 0.00 0.00 2.82 R
4182 4663 0.250513 CGACAAAAGAGAGGGGAGGG 59.749 60.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 8.620416 TGATATTTATGTATTGTGTGAAGTGGC 58.380 33.333 0.00 0.00 0.00 5.01
53 54 4.937696 TTATGTATTGTGTGAAGTGGCG 57.062 40.909 0.00 0.00 0.00 5.69
54 55 2.535012 TGTATTGTGTGAAGTGGCGA 57.465 45.000 0.00 0.00 0.00 5.54
55 56 3.052455 TGTATTGTGTGAAGTGGCGAT 57.948 42.857 0.00 0.00 0.00 4.58
56 57 3.407698 TGTATTGTGTGAAGTGGCGATT 58.592 40.909 0.00 0.00 0.00 3.34
57 58 2.995466 ATTGTGTGAAGTGGCGATTG 57.005 45.000 0.00 0.00 0.00 2.67
58 59 1.674359 TTGTGTGAAGTGGCGATTGT 58.326 45.000 0.00 0.00 0.00 2.71
59 60 2.535012 TGTGTGAAGTGGCGATTGTA 57.465 45.000 0.00 0.00 0.00 2.41
60 61 2.839975 TGTGTGAAGTGGCGATTGTAA 58.160 42.857 0.00 0.00 0.00 2.41
61 62 2.805671 TGTGTGAAGTGGCGATTGTAAG 59.194 45.455 0.00 0.00 0.00 2.34
62 63 1.804151 TGTGAAGTGGCGATTGTAAGC 59.196 47.619 0.00 0.00 0.00 3.09
71 72 3.831715 GCGATTGTAAGCCAACTCTTT 57.168 42.857 0.00 0.00 35.44 2.52
72 73 4.939509 GCGATTGTAAGCCAACTCTTTA 57.060 40.909 0.00 0.00 35.44 1.85
73 74 5.485662 GCGATTGTAAGCCAACTCTTTAT 57.514 39.130 0.00 0.00 35.44 1.40
74 75 5.502606 GCGATTGTAAGCCAACTCTTTATC 58.497 41.667 0.00 0.00 35.44 1.75
75 76 5.504173 GCGATTGTAAGCCAACTCTTTATCC 60.504 44.000 0.00 0.00 35.44 2.59
76 77 5.007724 CGATTGTAAGCCAACTCTTTATCCC 59.992 44.000 0.00 0.00 35.44 3.85
77 78 4.919774 TGTAAGCCAACTCTTTATCCCA 57.080 40.909 0.00 0.00 0.00 4.37
78 79 5.450818 TGTAAGCCAACTCTTTATCCCAT 57.549 39.130 0.00 0.00 0.00 4.00
79 80 5.826643 TGTAAGCCAACTCTTTATCCCATT 58.173 37.500 0.00 0.00 0.00 3.16
80 81 5.885912 TGTAAGCCAACTCTTTATCCCATTC 59.114 40.000 0.00 0.00 0.00 2.67
81 82 4.870021 AGCCAACTCTTTATCCCATTCT 57.130 40.909 0.00 0.00 0.00 2.40
82 83 5.198602 AGCCAACTCTTTATCCCATTCTT 57.801 39.130 0.00 0.00 0.00 2.52
83 84 4.952335 AGCCAACTCTTTATCCCATTCTTG 59.048 41.667 0.00 0.00 0.00 3.02
84 85 4.706962 GCCAACTCTTTATCCCATTCTTGT 59.293 41.667 0.00 0.00 0.00 3.16
85 86 5.185828 GCCAACTCTTTATCCCATTCTTGTT 59.814 40.000 0.00 0.00 0.00 2.83
86 87 6.625960 GCCAACTCTTTATCCCATTCTTGTTC 60.626 42.308 0.00 0.00 0.00 3.18
87 88 6.660949 CCAACTCTTTATCCCATTCTTGTTCT 59.339 38.462 0.00 0.00 0.00 3.01
88 89 7.177392 CCAACTCTTTATCCCATTCTTGTTCTT 59.823 37.037 0.00 0.00 0.00 2.52
89 90 8.579863 CAACTCTTTATCCCATTCTTGTTCTTT 58.420 33.333 0.00 0.00 0.00 2.52
90 91 9.807921 AACTCTTTATCCCATTCTTGTTCTTTA 57.192 29.630 0.00 0.00 0.00 1.85
91 92 9.232473 ACTCTTTATCCCATTCTTGTTCTTTAC 57.768 33.333 0.00 0.00 0.00 2.01
92 93 9.231297 CTCTTTATCCCATTCTTGTTCTTTACA 57.769 33.333 0.00 0.00 34.12 2.41
93 94 9.753674 TCTTTATCCCATTCTTGTTCTTTACAT 57.246 29.630 0.00 0.00 36.44 2.29
94 95 9.793252 CTTTATCCCATTCTTGTTCTTTACATG 57.207 33.333 0.00 0.00 36.44 3.21
95 96 6.780457 ATCCCATTCTTGTTCTTTACATGG 57.220 37.500 0.00 0.00 36.44 3.66
96 97 5.329035 CCCATTCTTGTTCTTTACATGGG 57.671 43.478 0.00 0.00 43.44 4.00
98 99 6.780457 CCATTCTTGTTCTTTACATGGGAT 57.220 37.500 0.00 0.00 36.44 3.85
99 100 7.174107 CCATTCTTGTTCTTTACATGGGATT 57.826 36.000 0.00 0.00 36.44 3.01
100 101 7.037438 CCATTCTTGTTCTTTACATGGGATTG 58.963 38.462 0.00 0.00 36.44 2.67
101 102 7.309990 CCATTCTTGTTCTTTACATGGGATTGT 60.310 37.037 0.00 0.00 36.44 2.71
102 103 6.573664 TCTTGTTCTTTACATGGGATTGTG 57.426 37.500 0.00 0.00 36.44 3.33
103 104 6.068010 TCTTGTTCTTTACATGGGATTGTGT 58.932 36.000 0.00 0.00 36.44 3.72
104 105 5.703978 TGTTCTTTACATGGGATTGTGTG 57.296 39.130 0.00 0.00 0.00 3.82
105 106 5.380900 TGTTCTTTACATGGGATTGTGTGA 58.619 37.500 0.00 0.00 0.00 3.58
106 107 5.830457 TGTTCTTTACATGGGATTGTGTGAA 59.170 36.000 0.00 0.00 0.00 3.18
107 108 6.016360 TGTTCTTTACATGGGATTGTGTGAAG 60.016 38.462 0.00 4.30 40.95 3.02
108 109 5.875224 TCTTTACATGGGATTGTGTGAAGA 58.125 37.500 8.15 8.15 43.93 2.87
109 110 6.484288 TCTTTACATGGGATTGTGTGAAGAT 58.516 36.000 8.15 0.00 42.40 2.40
110 111 6.375174 TCTTTACATGGGATTGTGTGAAGATG 59.625 38.462 8.15 0.00 42.40 2.90
111 112 4.305539 ACATGGGATTGTGTGAAGATGA 57.694 40.909 0.00 0.00 0.00 2.92
112 113 4.012374 ACATGGGATTGTGTGAAGATGAC 58.988 43.478 0.00 0.00 0.00 3.06
113 114 3.071874 TGGGATTGTGTGAAGATGACC 57.928 47.619 0.00 0.00 0.00 4.02
114 115 2.290896 TGGGATTGTGTGAAGATGACCC 60.291 50.000 0.00 0.00 35.82 4.46
115 116 2.025887 GGGATTGTGTGAAGATGACCCT 60.026 50.000 0.00 0.00 32.93 4.34
116 117 3.562176 GGGATTGTGTGAAGATGACCCTT 60.562 47.826 0.00 0.00 32.93 3.95
117 118 3.691609 GGATTGTGTGAAGATGACCCTTC 59.308 47.826 0.00 0.00 42.09 3.46
118 119 4.566488 GGATTGTGTGAAGATGACCCTTCT 60.566 45.833 0.00 0.00 42.20 2.85
119 120 4.437682 TTGTGTGAAGATGACCCTTCTT 57.562 40.909 0.00 0.00 42.20 2.52
120 121 3.743521 TGTGTGAAGATGACCCTTCTTG 58.256 45.455 0.00 0.00 42.20 3.02
121 122 2.485814 GTGTGAAGATGACCCTTCTTGC 59.514 50.000 0.00 0.00 42.20 4.01
122 123 1.734465 GTGAAGATGACCCTTCTTGCG 59.266 52.381 0.00 0.00 42.20 4.85
123 124 1.623311 TGAAGATGACCCTTCTTGCGA 59.377 47.619 0.00 0.00 42.20 5.10
124 125 2.003301 GAAGATGACCCTTCTTGCGAC 58.997 52.381 0.00 0.00 39.44 5.19
125 126 0.976641 AGATGACCCTTCTTGCGACA 59.023 50.000 0.00 0.00 0.00 4.35
126 127 1.347707 AGATGACCCTTCTTGCGACAA 59.652 47.619 0.00 0.00 0.00 3.18
127 128 2.151202 GATGACCCTTCTTGCGACAAA 58.849 47.619 0.00 0.00 0.00 2.83
128 129 2.045561 TGACCCTTCTTGCGACAAAA 57.954 45.000 0.00 0.00 0.00 2.44
129 130 1.673920 TGACCCTTCTTGCGACAAAAC 59.326 47.619 0.00 0.00 0.00 2.43
130 131 1.001706 GACCCTTCTTGCGACAAAACC 60.002 52.381 0.00 0.00 0.00 3.27
131 132 1.028905 CCCTTCTTGCGACAAAACCA 58.971 50.000 0.00 0.00 0.00 3.67
132 133 1.269051 CCCTTCTTGCGACAAAACCAC 60.269 52.381 0.00 0.00 0.00 4.16
133 134 1.676006 CCTTCTTGCGACAAAACCACT 59.324 47.619 0.00 0.00 0.00 4.00
134 135 2.875933 CCTTCTTGCGACAAAACCACTA 59.124 45.455 0.00 0.00 0.00 2.74
135 136 3.502211 CCTTCTTGCGACAAAACCACTAT 59.498 43.478 0.00 0.00 0.00 2.12
136 137 4.466828 CTTCTTGCGACAAAACCACTATG 58.533 43.478 0.00 0.00 0.00 2.23
137 138 2.225491 TCTTGCGACAAAACCACTATGC 59.775 45.455 0.00 0.00 0.00 3.14
138 139 0.515127 TGCGACAAAACCACTATGCG 59.485 50.000 0.00 0.00 0.00 4.73
139 140 0.179200 GCGACAAAACCACTATGCGG 60.179 55.000 0.00 0.00 0.00 5.69
140 141 1.153353 CGACAAAACCACTATGCGGT 58.847 50.000 0.00 0.00 38.85 5.68
142 143 2.737783 CGACAAAACCACTATGCGGTTA 59.262 45.455 0.00 0.00 46.12 2.85
143 144 3.372822 CGACAAAACCACTATGCGGTTAT 59.627 43.478 0.00 0.00 46.12 1.89
144 145 4.658071 GACAAAACCACTATGCGGTTATG 58.342 43.478 0.00 0.00 46.12 1.90
145 146 3.442273 ACAAAACCACTATGCGGTTATGG 59.558 43.478 0.00 0.00 46.12 2.74
146 147 1.675552 AACCACTATGCGGTTATGGC 58.324 50.000 0.00 0.00 45.00 4.40
147 148 0.837272 ACCACTATGCGGTTATGGCT 59.163 50.000 0.00 0.00 30.53 4.75
148 149 1.202651 ACCACTATGCGGTTATGGCTC 60.203 52.381 0.00 0.00 30.53 4.70
149 150 1.070758 CCACTATGCGGTTATGGCTCT 59.929 52.381 0.00 0.00 0.00 4.09
150 151 2.299013 CCACTATGCGGTTATGGCTCTA 59.701 50.000 0.00 0.00 0.00 2.43
151 152 3.244078 CCACTATGCGGTTATGGCTCTAA 60.244 47.826 0.00 0.00 0.00 2.10
152 153 4.377021 CACTATGCGGTTATGGCTCTAAA 58.623 43.478 0.00 0.00 0.00 1.85
153 154 4.997395 CACTATGCGGTTATGGCTCTAAAT 59.003 41.667 0.00 0.00 0.00 1.40
154 155 5.120830 CACTATGCGGTTATGGCTCTAAATC 59.879 44.000 0.00 0.00 0.00 2.17
155 156 2.479837 TGCGGTTATGGCTCTAAATCG 58.520 47.619 0.00 0.00 0.00 3.34
156 157 2.159014 TGCGGTTATGGCTCTAAATCGT 60.159 45.455 0.00 0.00 0.00 3.73
157 158 2.221055 GCGGTTATGGCTCTAAATCGTG 59.779 50.000 0.00 0.00 0.00 4.35
158 159 2.221055 CGGTTATGGCTCTAAATCGTGC 59.779 50.000 0.00 0.00 0.00 5.34
159 160 2.548480 GGTTATGGCTCTAAATCGTGCC 59.452 50.000 0.00 0.00 42.38 5.01
160 161 3.467803 GTTATGGCTCTAAATCGTGCCT 58.532 45.455 0.00 0.00 42.49 4.75
161 162 2.246719 ATGGCTCTAAATCGTGCCTC 57.753 50.000 0.00 0.00 42.49 4.70
162 163 0.179111 TGGCTCTAAATCGTGCCTCG 60.179 55.000 0.00 0.00 42.49 4.63
172 173 3.986006 GTGCCTCGACACGTGGGA 61.986 66.667 21.57 15.34 40.31 4.37
173 174 3.680786 TGCCTCGACACGTGGGAG 61.681 66.667 24.04 24.04 40.31 4.30
174 175 3.371063 GCCTCGACACGTGGGAGA 61.371 66.667 29.41 19.95 40.31 3.71
175 176 2.711922 GCCTCGACACGTGGGAGAT 61.712 63.158 29.41 7.79 40.31 2.75
176 177 1.381928 GCCTCGACACGTGGGAGATA 61.382 60.000 29.41 7.54 40.31 1.98
177 178 1.319541 CCTCGACACGTGGGAGATAT 58.680 55.000 29.41 6.39 36.95 1.63
178 179 2.501261 CCTCGACACGTGGGAGATATA 58.499 52.381 29.41 5.30 36.95 0.86
179 180 2.484651 CCTCGACACGTGGGAGATATAG 59.515 54.545 29.41 15.13 36.95 1.31
180 181 1.878088 TCGACACGTGGGAGATATAGC 59.122 52.381 21.57 0.00 0.00 2.97
181 182 1.068472 CGACACGTGGGAGATATAGCC 60.068 57.143 21.57 0.00 0.00 3.93
182 183 0.959553 ACACGTGGGAGATATAGCCG 59.040 55.000 21.57 0.00 0.00 5.52
183 184 0.388649 CACGTGGGAGATATAGCCGC 60.389 60.000 7.95 0.00 0.00 6.53
184 185 0.826256 ACGTGGGAGATATAGCCGCA 60.826 55.000 0.00 0.00 0.00 5.69
185 186 0.532573 CGTGGGAGATATAGCCGCAT 59.467 55.000 0.00 0.00 0.00 4.73
186 187 1.469940 CGTGGGAGATATAGCCGCATC 60.470 57.143 0.00 0.00 0.00 3.91
187 188 0.817654 TGGGAGATATAGCCGCATCG 59.182 55.000 0.00 0.00 0.00 3.84
188 189 0.818296 GGGAGATATAGCCGCATCGT 59.182 55.000 0.00 0.00 0.00 3.73
189 190 1.469940 GGGAGATATAGCCGCATCGTG 60.470 57.143 0.00 0.00 0.00 4.35
190 191 1.469940 GGAGATATAGCCGCATCGTGG 60.470 57.143 0.00 0.00 36.10 4.94
191 192 1.472878 GAGATATAGCCGCATCGTGGA 59.527 52.381 0.00 0.00 34.74 4.02
192 193 1.202582 AGATATAGCCGCATCGTGGAC 59.797 52.381 0.00 0.00 34.74 4.02
193 194 0.109272 ATATAGCCGCATCGTGGACG 60.109 55.000 0.00 0.00 34.74 4.79
194 195 1.449726 TATAGCCGCATCGTGGACGT 61.450 55.000 0.00 0.00 40.80 4.34
195 196 2.292794 ATAGCCGCATCGTGGACGTT 62.293 55.000 0.00 0.00 40.80 3.99
196 197 1.655885 TAGCCGCATCGTGGACGTTA 61.656 55.000 0.00 0.00 40.80 3.18
197 198 2.795389 GCCGCATCGTGGACGTTAC 61.795 63.158 0.00 0.00 40.80 2.50
268 269 5.715439 AGATTCTCCACCACCATTTGATA 57.285 39.130 0.00 0.00 0.00 2.15
318 319 1.234806 ATGATGGCCAACACCCCTAT 58.765 50.000 19.07 0.00 0.00 2.57
349 350 4.389687 GGCTTGCACATAAGTTTCCATTTG 59.610 41.667 0.00 0.00 0.00 2.32
357 358 6.016360 CACATAAGTTTCCATTTGACCACTCA 60.016 38.462 0.00 0.00 0.00 3.41
390 391 4.405116 TGCTCCTTTGATGTTGCTTTTT 57.595 36.364 0.00 0.00 0.00 1.94
391 392 4.121317 TGCTCCTTTGATGTTGCTTTTTG 58.879 39.130 0.00 0.00 0.00 2.44
395 399 5.591099 TCCTTTGATGTTGCTTTTTGTCTC 58.409 37.500 0.00 0.00 0.00 3.36
426 430 2.251642 GGTGCGAAGGGTGACACAC 61.252 63.158 8.08 3.19 34.69 3.82
546 729 3.837146 CCATGACAGGCTATATCACCTCT 59.163 47.826 0.00 0.00 32.56 3.69
593 776 0.602638 AGATCAGAAAACCGCGTGCA 60.603 50.000 4.92 0.00 0.00 4.57
599 782 2.753237 GAAAACCGCGTGCACCGTAC 62.753 60.000 21.01 5.59 39.32 3.67
602 785 4.757354 CCGCGTGCACCGTACGTA 62.757 66.667 21.01 0.00 43.09 3.57
603 786 3.235437 CGCGTGCACCGTACGTAG 61.235 66.667 15.21 7.17 43.09 3.51
604 787 2.126734 GCGTGCACCGTACGTAGT 60.127 61.111 15.21 2.62 43.09 2.73
605 788 1.134487 GCGTGCACCGTACGTAGTA 59.866 57.895 15.21 2.60 43.09 1.82
876 1060 4.415332 CCCGTCACACGAGTCCGG 62.415 72.222 11.97 11.97 46.05 5.14
879 1063 4.034258 GTCACACGAGTCCGGCGA 62.034 66.667 9.30 0.00 40.78 5.54
880 1064 4.034258 TCACACGAGTCCGGCGAC 62.034 66.667 9.30 4.76 40.78 5.19
956 1144 0.594110 TTCGACGGGGATTTTGTTGC 59.406 50.000 0.00 0.00 0.00 4.17
982 1170 2.728180 CGGATTCCCAGCGATCGA 59.272 61.111 21.57 0.00 0.00 3.59
1075 1263 1.389609 GGTACGGCGATCTTCCCTGA 61.390 60.000 16.62 0.00 0.00 3.86
1078 1266 1.633774 ACGGCGATCTTCCCTGATAT 58.366 50.000 16.62 0.00 0.00 1.63
1079 1267 1.273606 ACGGCGATCTTCCCTGATATG 59.726 52.381 16.62 0.00 0.00 1.78
1082 1270 3.056821 CGGCGATCTTCCCTGATATGTTA 60.057 47.826 0.00 0.00 0.00 2.41
1085 1273 5.105146 GGCGATCTTCCCTGATATGTTAGAT 60.105 44.000 0.00 0.00 0.00 1.98
1087 1275 7.199766 GCGATCTTCCCTGATATGTTAGATAG 58.800 42.308 0.00 0.00 0.00 2.08
1088 1276 7.683222 GCGATCTTCCCTGATATGTTAGATAGG 60.683 44.444 0.00 0.00 0.00 2.57
1089 1277 7.558081 CGATCTTCCCTGATATGTTAGATAGGA 59.442 40.741 0.00 0.00 0.00 2.94
1090 1278 9.261035 GATCTTCCCTGATATGTTAGATAGGAA 57.739 37.037 0.00 0.00 0.00 3.36
1091 1279 9.621239 ATCTTCCCTGATATGTTAGATAGGAAA 57.379 33.333 0.00 0.00 30.91 3.13
1092 1280 9.447279 TCTTCCCTGATATGTTAGATAGGAAAA 57.553 33.333 0.00 0.00 30.91 2.29
1097 1285 7.661847 CCTGATATGTTAGATAGGAAAACACCC 59.338 40.741 0.00 0.00 36.06 4.61
1103 1291 2.206223 GATAGGAAAACACCCTCCCCT 58.794 52.381 0.00 0.00 35.30 4.79
1119 1307 2.025887 TCCCCTTTTTGATGCTCCTCTC 60.026 50.000 0.00 0.00 0.00 3.20
1161 1357 3.129813 GTGTTGGTTCTTTTTCTTCGGGT 59.870 43.478 0.00 0.00 0.00 5.28
1170 1366 7.541091 GGTTCTTTTTCTTCGGGTCATTTAATC 59.459 37.037 0.00 0.00 0.00 1.75
1175 1371 3.869246 TCTTCGGGTCATTTAATCGCTTC 59.131 43.478 0.00 0.00 0.00 3.86
1402 1626 1.612442 AGGGGAGGCAAGCGAGTTA 60.612 57.895 0.00 0.00 0.00 2.24
1445 1669 7.724061 AGGAATAAATCAACCTGCCGTATATTT 59.276 33.333 0.00 0.00 0.00 1.40
1456 1680 3.311322 TGCCGTATATTTTCTTGCGGAAG 59.689 43.478 10.87 10.87 41.45 3.46
1478 1705 2.024751 GGGGGTTGGGAACTTGCTTATA 60.025 50.000 0.00 0.00 0.00 0.98
1479 1706 3.564790 GGGGGTTGGGAACTTGCTTATAA 60.565 47.826 0.00 0.00 0.00 0.98
1507 1807 3.055819 TGGTTAGCTGAACACTCTGATCC 60.056 47.826 0.00 0.00 40.09 3.36
1524 1824 7.828223 ACTCTGATCCAATATTTATGCCTGATC 59.172 37.037 0.00 0.00 0.00 2.92
1525 1825 7.925622 TCTGATCCAATATTTATGCCTGATCT 58.074 34.615 0.00 0.00 0.00 2.75
1526 1826 8.388589 TCTGATCCAATATTTATGCCTGATCTT 58.611 33.333 0.00 0.00 0.00 2.40
1700 2012 5.392811 GCTGATGTTGCTTTTCTGCTCTTAT 60.393 40.000 0.00 0.00 33.23 1.73
1704 2016 6.254281 TGTTGCTTTTCTGCTCTTATTACC 57.746 37.500 0.00 0.00 0.00 2.85
1896 2209 8.950210 TCTTTTATCTTTCTGCTGAGGTATTTG 58.050 33.333 0.00 0.00 0.00 2.32
2091 2441 6.667414 TGTATTTCTTGTGGCCCATCTATTTT 59.333 34.615 0.00 0.00 0.00 1.82
2133 2483 1.205893 GCACTTTTTGGTCCCACACAA 59.794 47.619 0.00 0.00 0.00 3.33
2190 2549 6.648725 GCAAAAATTAAGGTGCCTATGAACAA 59.351 34.615 0.00 0.00 0.00 2.83
2191 2550 7.360017 GCAAAAATTAAGGTGCCTATGAACAAC 60.360 37.037 0.00 0.00 0.00 3.32
2192 2551 6.909550 AAATTAAGGTGCCTATGAACAACA 57.090 33.333 0.00 0.00 0.00 3.33
2981 3457 2.492088 GGATTTGAACCAAGGTAGTGGC 59.508 50.000 0.00 0.00 43.00 5.01
3370 3849 6.628919 AACTTGACCACTATTTTAAACGCT 57.371 33.333 0.00 0.00 0.00 5.07
3380 3859 6.582295 CACTATTTTAAACGCTCACATGCTTT 59.418 34.615 0.00 0.00 0.00 3.51
3448 3928 5.858381 ACATGAGAAGTCTCTGCTTGTTAA 58.142 37.500 9.63 0.00 43.25 2.01
3479 3959 4.770795 ACTGTAGGTGAATGAATAGGTGC 58.229 43.478 0.00 0.00 0.00 5.01
3528 4008 3.644738 TCGTTCTCCACTCCTTTTACCTT 59.355 43.478 0.00 0.00 0.00 3.50
3567 4047 0.322975 AGAACCATCGTTGCTGCTCT 59.677 50.000 0.00 0.00 30.30 4.09
3571 4051 1.136147 CATCGTTGCTGCTCTTGCC 59.864 57.895 0.00 0.00 38.71 4.52
3572 4052 1.002868 ATCGTTGCTGCTCTTGCCT 60.003 52.632 0.00 0.00 38.71 4.75
3573 4053 0.250234 ATCGTTGCTGCTCTTGCCTA 59.750 50.000 0.00 0.00 38.71 3.93
3574 4054 0.034756 TCGTTGCTGCTCTTGCCTAA 59.965 50.000 0.00 0.00 38.71 2.69
3575 4055 0.166814 CGTTGCTGCTCTTGCCTAAC 59.833 55.000 0.00 0.00 38.71 2.34
3576 4056 1.238439 GTTGCTGCTCTTGCCTAACA 58.762 50.000 0.00 0.00 38.71 2.41
3577 4057 1.198637 GTTGCTGCTCTTGCCTAACAG 59.801 52.381 0.00 0.00 38.71 3.16
3578 4058 0.321919 TGCTGCTCTTGCCTAACAGG 60.322 55.000 0.00 0.00 38.80 4.00
3638 4118 0.179004 ACCAATGGAGGTGTGCGAAA 60.179 50.000 6.16 0.00 41.30 3.46
3853 4333 6.037610 GCTCATACTAACAACCTTTGGATGAG 59.962 42.308 10.60 10.60 35.20 2.90
3876 4357 6.229733 AGAGATGACACCAGAAAGAAAGAAG 58.770 40.000 0.00 0.00 0.00 2.85
3886 4367 7.659390 CACCAGAAAGAAAGAAGAAGATAGTGT 59.341 37.037 0.00 0.00 0.00 3.55
3909 4390 3.055385 TGAGGAACACCTTATAGCCACAC 60.055 47.826 0.00 0.00 33.73 3.82
3918 4399 4.130118 CCTTATAGCCACACATCCAGTTC 58.870 47.826 0.00 0.00 0.00 3.01
4118 4599 7.172190 CACATATGAGGAGTGGAACATAATGTC 59.828 40.741 10.38 0.00 44.52 3.06
4172 4653 5.972107 GCATGATACAATTTATGCCTCCT 57.028 39.130 0.00 0.00 39.88 3.69
4173 4654 5.947443 GCATGATACAATTTATGCCTCCTC 58.053 41.667 0.00 0.00 39.88 3.71
4174 4655 5.105997 GCATGATACAATTTATGCCTCCTCC 60.106 44.000 0.00 0.00 39.88 4.30
4175 4656 4.985538 TGATACAATTTATGCCTCCTCCC 58.014 43.478 0.00 0.00 0.00 4.30
4176 4657 2.755952 ACAATTTATGCCTCCTCCCC 57.244 50.000 0.00 0.00 0.00 4.81
4177 4658 1.217942 ACAATTTATGCCTCCTCCCCC 59.782 52.381 0.00 0.00 0.00 5.40
4193 4674 4.179599 CCCTCCCCCTCCCCTCTC 62.180 77.778 0.00 0.00 0.00 3.20
4194 4675 3.039526 CCTCCCCCTCCCCTCTCT 61.040 72.222 0.00 0.00 0.00 3.10
4195 4676 2.652113 CCTCCCCCTCCCCTCTCTT 61.652 68.421 0.00 0.00 0.00 2.85
4196 4677 1.398234 CTCCCCCTCCCCTCTCTTT 59.602 63.158 0.00 0.00 0.00 2.52
4197 4678 0.253394 CTCCCCCTCCCCTCTCTTTT 60.253 60.000 0.00 0.00 0.00 2.27
4198 4679 0.550147 TCCCCCTCCCCTCTCTTTTG 60.550 60.000 0.00 0.00 0.00 2.44
4199 4680 0.846870 CCCCCTCCCCTCTCTTTTGT 60.847 60.000 0.00 0.00 0.00 2.83
4200 4681 0.621082 CCCCTCCCCTCTCTTTTGTC 59.379 60.000 0.00 0.00 0.00 3.18
4232 4913 5.717654 ACTGTTTGGTTTCTGGAGGTTTTTA 59.282 36.000 0.00 0.00 0.00 1.52
4235 4916 8.307582 TGTTTGGTTTCTGGAGGTTTTTATTA 57.692 30.769 0.00 0.00 0.00 0.98
4236 4917 8.198778 TGTTTGGTTTCTGGAGGTTTTTATTAC 58.801 33.333 0.00 0.00 0.00 1.89
4237 4918 7.899648 TTGGTTTCTGGAGGTTTTTATTACA 57.100 32.000 0.00 0.00 0.00 2.41
4239 4920 6.015772 TGGTTTCTGGAGGTTTTTATTACAGC 60.016 38.462 0.00 0.00 0.00 4.40
4240 4921 6.208797 GGTTTCTGGAGGTTTTTATTACAGCT 59.791 38.462 0.00 0.00 0.00 4.24
4242 4923 5.253330 TCTGGAGGTTTTTATTACAGCTGG 58.747 41.667 19.93 0.00 0.00 4.85
4244 4925 4.764823 TGGAGGTTTTTATTACAGCTGGTG 59.235 41.667 19.93 5.12 0.00 4.17
4291 4981 3.963374 AGCAGCATGTATGGTCTTCTCTA 59.037 43.478 0.00 0.00 39.31 2.43
4297 4987 9.330063 CAGCATGTATGGTCTTCTCTATAAAAA 57.670 33.333 0.00 0.00 36.17 1.94
4323 5270 3.831323 CATTCCACTGGGTTATGGCATA 58.169 45.455 2.32 2.32 35.81 3.14
4328 5275 3.822735 CCACTGGGTTATGGCATATTCAG 59.177 47.826 20.66 20.66 0.00 3.02
4345 5292 3.643159 TCAGCGCGTCTACATTCATAT 57.357 42.857 8.43 0.00 0.00 1.78
4352 5299 6.967767 AGCGCGTCTACATTCATATAGATAAC 59.032 38.462 8.43 0.00 30.35 1.89
4371 5318 7.497595 AGATAACGAACATAGATAACTTGGCA 58.502 34.615 0.00 0.00 0.00 4.92
4378 5325 7.412346 CGAACATAGATAACTTGGCATAGCATC 60.412 40.741 0.00 0.00 0.00 3.91
4393 5346 0.999228 GCATCGACGCCTATGAGACG 60.999 60.000 0.00 0.00 0.00 4.18
4413 5366 5.661759 AGACGTGGAAAATAATACTCCCTCT 59.338 40.000 0.00 0.00 0.00 3.69
4414 5367 5.671493 ACGTGGAAAATAATACTCCCTCTG 58.329 41.667 0.00 0.00 0.00 3.35
4417 5370 6.647067 CGTGGAAAATAATACTCCCTCTGATC 59.353 42.308 0.00 0.00 0.00 2.92
4423 5376 7.430760 AATAATACTCCCTCTGATCCATAGC 57.569 40.000 0.00 0.00 0.00 2.97
4497 5450 2.223745 TCCACAAAACCGGTAGCTTTC 58.776 47.619 8.00 0.00 0.00 2.62
4521 5474 0.539669 AAAAACCAGCTCCCCTTCGG 60.540 55.000 0.00 0.00 0.00 4.30
4553 5506 5.702670 TGATTGAGCAGTTTTTCTCACCTAG 59.297 40.000 0.00 0.00 38.87 3.02
4555 5508 2.744741 GAGCAGTTTTTCTCACCTAGGC 59.255 50.000 9.30 0.00 0.00 3.93
4560 5513 3.138468 AGTTTTTCTCACCTAGGCCTTGT 59.862 43.478 12.58 6.11 0.00 3.16
4561 5514 3.876309 TTTTCTCACCTAGGCCTTGTT 57.124 42.857 12.58 0.00 0.00 2.83
4562 5515 3.418684 TTTCTCACCTAGGCCTTGTTC 57.581 47.619 12.58 0.00 0.00 3.18
4563 5516 0.895530 TCTCACCTAGGCCTTGTTCG 59.104 55.000 12.58 0.00 0.00 3.95
4564 5517 0.108138 CTCACCTAGGCCTTGTTCGG 60.108 60.000 12.58 6.89 0.00 4.30
4565 5518 0.834687 TCACCTAGGCCTTGTTCGGT 60.835 55.000 12.58 7.59 0.00 4.69
4566 5519 0.036306 CACCTAGGCCTTGTTCGGTT 59.964 55.000 12.58 0.00 0.00 4.44
4567 5520 1.276989 CACCTAGGCCTTGTTCGGTTA 59.723 52.381 12.58 0.00 0.00 2.85
4568 5521 2.093128 CACCTAGGCCTTGTTCGGTTAT 60.093 50.000 12.58 0.00 0.00 1.89
4569 5522 3.133362 CACCTAGGCCTTGTTCGGTTATA 59.867 47.826 12.58 0.00 0.00 0.98
4570 5523 3.387050 ACCTAGGCCTTGTTCGGTTATAG 59.613 47.826 12.58 0.00 0.00 1.31
4571 5524 3.244112 CCTAGGCCTTGTTCGGTTATAGG 60.244 52.174 12.58 2.28 0.00 2.57
4572 5525 2.474112 AGGCCTTGTTCGGTTATAGGA 58.526 47.619 0.00 0.00 0.00 2.94
4573 5526 2.434702 AGGCCTTGTTCGGTTATAGGAG 59.565 50.000 0.00 0.00 0.00 3.69
4574 5527 2.433239 GGCCTTGTTCGGTTATAGGAGA 59.567 50.000 0.00 0.00 0.00 3.71
4575 5528 3.071167 GGCCTTGTTCGGTTATAGGAGAT 59.929 47.826 0.00 0.00 0.00 2.75
4576 5529 4.444449 GGCCTTGTTCGGTTATAGGAGATT 60.444 45.833 0.00 0.00 0.00 2.40
4577 5530 5.221581 GGCCTTGTTCGGTTATAGGAGATTA 60.222 44.000 0.00 0.00 0.00 1.75
4578 5531 5.927115 GCCTTGTTCGGTTATAGGAGATTAG 59.073 44.000 0.00 0.00 0.00 1.73
4579 5532 6.462628 GCCTTGTTCGGTTATAGGAGATTAGT 60.463 42.308 0.00 0.00 0.00 2.24
4580 5533 7.498443 CCTTGTTCGGTTATAGGAGATTAGTT 58.502 38.462 0.00 0.00 0.00 2.24
4581 5534 7.652507 CCTTGTTCGGTTATAGGAGATTAGTTC 59.347 40.741 0.00 0.00 0.00 3.01
4582 5535 7.047460 TGTTCGGTTATAGGAGATTAGTTCC 57.953 40.000 0.00 0.00 34.83 3.62
4583 5536 6.041296 TGTTCGGTTATAGGAGATTAGTTCCC 59.959 42.308 0.00 0.00 35.20 3.97
4584 5537 5.082425 TCGGTTATAGGAGATTAGTTCCCC 58.918 45.833 0.00 0.00 35.20 4.81
4585 5538 5.085219 CGGTTATAGGAGATTAGTTCCCCT 58.915 45.833 0.00 0.00 35.20 4.79
4630 5583 2.365635 CCGTGGGGGATGACTCCT 60.366 66.667 0.00 0.00 41.74 3.69
4647 5600 1.757118 TCCTTGTCACGATCTCCCATC 59.243 52.381 0.00 0.00 0.00 3.51
4662 5615 0.534203 CCATCCGATTAACCCCACGG 60.534 60.000 0.00 0.00 45.61 4.94
4716 5670 1.689273 ACAGGAGAGAAACGAAGCTGT 59.311 47.619 0.00 0.00 0.00 4.40
4721 5675 4.273724 AGGAGAGAAACGAAGCTGTTTTTC 59.726 41.667 10.53 10.53 41.89 2.29
4723 5677 3.945285 AGAGAAACGAAGCTGTTTTTCCA 59.055 39.130 13.44 0.00 41.41 3.53
4724 5678 4.028852 AGAAACGAAGCTGTTTTTCCAC 57.971 40.909 3.90 0.00 41.89 4.02
4728 5682 1.029681 GAAGCTGTTTTTCCACGGGT 58.970 50.000 0.00 0.00 35.18 5.28
4773 5740 1.051556 TGGTTTTGAGGGGTTTGGGC 61.052 55.000 0.00 0.00 0.00 5.36
4788 5755 2.358619 GGCTGGGGTACATTGCCA 59.641 61.111 11.72 0.00 42.79 4.92
4789 5756 1.304879 GGCTGGGGTACATTGCCAA 60.305 57.895 11.72 0.00 42.79 4.52
4790 5757 0.902516 GGCTGGGGTACATTGCCAAA 60.903 55.000 11.72 0.00 42.79 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.620416 GCCACTTCACACAATACATAAATATCA 58.380 33.333 0.00 0.00 0.00 2.15
27 28 7.798516 CGCCACTTCACACAATACATAAATATC 59.201 37.037 0.00 0.00 0.00 1.63
28 29 7.497579 TCGCCACTTCACACAATACATAAATAT 59.502 33.333 0.00 0.00 0.00 1.28
29 30 6.819146 TCGCCACTTCACACAATACATAAATA 59.181 34.615 0.00 0.00 0.00 1.40
30 31 5.645929 TCGCCACTTCACACAATACATAAAT 59.354 36.000 0.00 0.00 0.00 1.40
31 32 4.998033 TCGCCACTTCACACAATACATAAA 59.002 37.500 0.00 0.00 0.00 1.40
32 33 4.570930 TCGCCACTTCACACAATACATAA 58.429 39.130 0.00 0.00 0.00 1.90
33 34 4.195225 TCGCCACTTCACACAATACATA 57.805 40.909 0.00 0.00 0.00 2.29
34 35 3.052455 TCGCCACTTCACACAATACAT 57.948 42.857 0.00 0.00 0.00 2.29
35 36 2.535012 TCGCCACTTCACACAATACA 57.465 45.000 0.00 0.00 0.00 2.29
36 37 3.188460 ACAATCGCCACTTCACACAATAC 59.812 43.478 0.00 0.00 0.00 1.89
37 38 3.407698 ACAATCGCCACTTCACACAATA 58.592 40.909 0.00 0.00 0.00 1.90
38 39 2.229792 ACAATCGCCACTTCACACAAT 58.770 42.857 0.00 0.00 0.00 2.71
39 40 1.674359 ACAATCGCCACTTCACACAA 58.326 45.000 0.00 0.00 0.00 3.33
40 41 2.535012 TACAATCGCCACTTCACACA 57.465 45.000 0.00 0.00 0.00 3.72
41 42 2.412847 GCTTACAATCGCCACTTCACAC 60.413 50.000 0.00 0.00 0.00 3.82
42 43 1.804151 GCTTACAATCGCCACTTCACA 59.196 47.619 0.00 0.00 0.00 3.58
43 44 1.130561 GGCTTACAATCGCCACTTCAC 59.869 52.381 0.00 0.00 45.59 3.18
44 45 1.448985 GGCTTACAATCGCCACTTCA 58.551 50.000 0.00 0.00 45.59 3.02
50 51 1.739067 AGAGTTGGCTTACAATCGCC 58.261 50.000 0.00 0.00 46.46 5.54
51 52 3.831715 AAAGAGTTGGCTTACAATCGC 57.168 42.857 0.00 0.00 41.95 4.58
52 53 5.007724 GGGATAAAGAGTTGGCTTACAATCG 59.992 44.000 0.00 0.00 41.95 3.34
53 54 5.885912 TGGGATAAAGAGTTGGCTTACAATC 59.114 40.000 0.00 0.00 41.95 2.67
54 55 5.826643 TGGGATAAAGAGTTGGCTTACAAT 58.173 37.500 0.00 0.00 41.95 2.71
55 56 5.249780 TGGGATAAAGAGTTGGCTTACAA 57.750 39.130 0.00 0.00 36.54 2.41
56 57 4.919774 TGGGATAAAGAGTTGGCTTACA 57.080 40.909 0.00 0.00 0.00 2.41
57 58 6.122964 AGAATGGGATAAAGAGTTGGCTTAC 58.877 40.000 0.00 0.00 0.00 2.34
58 59 6.327386 AGAATGGGATAAAGAGTTGGCTTA 57.673 37.500 0.00 0.00 0.00 3.09
59 60 5.198602 AGAATGGGATAAAGAGTTGGCTT 57.801 39.130 0.00 0.00 0.00 4.35
60 61 4.870021 AGAATGGGATAAAGAGTTGGCT 57.130 40.909 0.00 0.00 0.00 4.75
61 62 4.706962 ACAAGAATGGGATAAAGAGTTGGC 59.293 41.667 0.00 0.00 0.00 4.52
62 63 6.660949 AGAACAAGAATGGGATAAAGAGTTGG 59.339 38.462 0.00 0.00 0.00 3.77
63 64 7.693969 AGAACAAGAATGGGATAAAGAGTTG 57.306 36.000 0.00 0.00 0.00 3.16
64 65 8.712228 AAAGAACAAGAATGGGATAAAGAGTT 57.288 30.769 0.00 0.00 0.00 3.01
65 66 9.232473 GTAAAGAACAAGAATGGGATAAAGAGT 57.768 33.333 0.00 0.00 0.00 3.24
66 67 9.231297 TGTAAAGAACAAGAATGGGATAAAGAG 57.769 33.333 0.00 0.00 34.29 2.85
67 68 9.753674 ATGTAAAGAACAAGAATGGGATAAAGA 57.246 29.630 0.00 0.00 42.70 2.52
68 69 9.793252 CATGTAAAGAACAAGAATGGGATAAAG 57.207 33.333 0.00 0.00 42.70 1.85
69 70 8.748412 CCATGTAAAGAACAAGAATGGGATAAA 58.252 33.333 0.00 0.00 42.70 1.40
70 71 8.292444 CCATGTAAAGAACAAGAATGGGATAA 57.708 34.615 0.00 0.00 42.70 1.75
71 72 7.880160 CCATGTAAAGAACAAGAATGGGATA 57.120 36.000 0.00 0.00 42.70 2.59
72 73 6.780457 CCATGTAAAGAACAAGAATGGGAT 57.220 37.500 0.00 0.00 42.70 3.85
74 75 5.329035 CCCATGTAAAGAACAAGAATGGG 57.671 43.478 3.55 3.55 44.43 4.00
75 76 6.780457 ATCCCATGTAAAGAACAAGAATGG 57.220 37.500 0.00 0.00 42.70 3.16
76 77 7.543172 CACAATCCCATGTAAAGAACAAGAATG 59.457 37.037 0.00 0.00 42.70 2.67
77 78 7.233348 ACACAATCCCATGTAAAGAACAAGAAT 59.767 33.333 0.00 0.00 42.70 2.40
78 79 6.549364 ACACAATCCCATGTAAAGAACAAGAA 59.451 34.615 0.00 0.00 42.70 2.52
79 80 6.016360 CACACAATCCCATGTAAAGAACAAGA 60.016 38.462 0.00 0.00 42.70 3.02
80 81 6.016360 TCACACAATCCCATGTAAAGAACAAG 60.016 38.462 0.00 0.00 42.70 3.16
81 82 5.830457 TCACACAATCCCATGTAAAGAACAA 59.170 36.000 0.00 0.00 42.70 2.83
82 83 5.380900 TCACACAATCCCATGTAAAGAACA 58.619 37.500 0.00 0.00 43.86 3.18
83 84 5.957842 TCACACAATCCCATGTAAAGAAC 57.042 39.130 0.00 0.00 30.84 3.01
84 85 6.303054 TCTTCACACAATCCCATGTAAAGAA 58.697 36.000 0.00 0.00 29.77 2.52
85 86 5.875224 TCTTCACACAATCCCATGTAAAGA 58.125 37.500 0.00 0.00 30.84 2.52
86 87 6.375174 TCATCTTCACACAATCCCATGTAAAG 59.625 38.462 0.00 0.00 30.84 1.85
87 88 6.150976 GTCATCTTCACACAATCCCATGTAAA 59.849 38.462 0.00 0.00 30.84 2.01
88 89 5.647658 GTCATCTTCACACAATCCCATGTAA 59.352 40.000 0.00 0.00 30.84 2.41
89 90 5.185454 GTCATCTTCACACAATCCCATGTA 58.815 41.667 0.00 0.00 30.84 2.29
90 91 4.012374 GTCATCTTCACACAATCCCATGT 58.988 43.478 0.00 0.00 0.00 3.21
91 92 3.379372 GGTCATCTTCACACAATCCCATG 59.621 47.826 0.00 0.00 0.00 3.66
92 93 3.624777 GGTCATCTTCACACAATCCCAT 58.375 45.455 0.00 0.00 0.00 4.00
93 94 2.290896 GGGTCATCTTCACACAATCCCA 60.291 50.000 0.00 0.00 33.33 4.37
94 95 2.025887 AGGGTCATCTTCACACAATCCC 60.026 50.000 0.00 0.00 0.00 3.85
95 96 3.356529 AGGGTCATCTTCACACAATCC 57.643 47.619 0.00 0.00 0.00 3.01
96 97 4.583871 AGAAGGGTCATCTTCACACAATC 58.416 43.478 7.26 0.00 44.01 2.67
97 98 4.647564 AGAAGGGTCATCTTCACACAAT 57.352 40.909 7.26 0.00 44.01 2.71
98 99 4.136796 CAAGAAGGGTCATCTTCACACAA 58.863 43.478 7.26 0.00 44.01 3.33
99 100 3.743521 CAAGAAGGGTCATCTTCACACA 58.256 45.455 7.26 0.00 44.01 3.72
100 101 2.485814 GCAAGAAGGGTCATCTTCACAC 59.514 50.000 7.26 0.00 44.01 3.82
101 102 2.783135 GCAAGAAGGGTCATCTTCACA 58.217 47.619 7.26 0.00 44.01 3.58
102 103 1.734465 CGCAAGAAGGGTCATCTTCAC 59.266 52.381 7.26 0.00 44.01 3.18
103 104 2.099141 CGCAAGAAGGGTCATCTTCA 57.901 50.000 7.26 0.00 44.01 3.02
117 118 2.584791 GCATAGTGGTTTTGTCGCAAG 58.415 47.619 0.00 0.00 0.00 4.01
118 119 1.069568 CGCATAGTGGTTTTGTCGCAA 60.070 47.619 0.00 0.00 0.00 4.85
119 120 0.515127 CGCATAGTGGTTTTGTCGCA 59.485 50.000 0.00 0.00 0.00 5.10
120 121 0.179200 CCGCATAGTGGTTTTGTCGC 60.179 55.000 0.00 0.00 0.00 5.19
121 122 1.153353 ACCGCATAGTGGTTTTGTCG 58.847 50.000 0.00 0.00 44.78 4.35
129 130 1.070758 AGAGCCATAACCGCATAGTGG 59.929 52.381 0.00 0.00 39.41 4.00
130 131 2.533266 AGAGCCATAACCGCATAGTG 57.467 50.000 0.00 0.00 0.00 2.74
131 132 4.682778 TTTAGAGCCATAACCGCATAGT 57.317 40.909 0.00 0.00 0.00 2.12
132 133 4.327357 CGATTTAGAGCCATAACCGCATAG 59.673 45.833 0.00 0.00 0.00 2.23
133 134 4.242475 CGATTTAGAGCCATAACCGCATA 58.758 43.478 0.00 0.00 0.00 3.14
134 135 3.067106 CGATTTAGAGCCATAACCGCAT 58.933 45.455 0.00 0.00 0.00 4.73
135 136 2.159014 ACGATTTAGAGCCATAACCGCA 60.159 45.455 0.00 0.00 0.00 5.69
136 137 2.221055 CACGATTTAGAGCCATAACCGC 59.779 50.000 0.00 0.00 0.00 5.68
137 138 2.221055 GCACGATTTAGAGCCATAACCG 59.779 50.000 0.00 0.00 0.00 4.44
138 139 2.548480 GGCACGATTTAGAGCCATAACC 59.452 50.000 0.00 0.00 45.33 2.85
139 140 3.879932 GGCACGATTTAGAGCCATAAC 57.120 47.619 0.00 0.00 45.33 1.89
144 145 0.102481 TCGAGGCACGATTTAGAGCC 59.898 55.000 2.07 0.00 46.45 4.70
145 146 3.642901 TCGAGGCACGATTTAGAGC 57.357 52.632 2.07 0.00 46.45 4.09
155 156 3.916392 CTCCCACGTGTCGAGGCAC 62.916 68.421 15.65 0.00 36.35 5.01
156 157 3.680786 CTCCCACGTGTCGAGGCA 61.681 66.667 15.65 0.00 36.35 4.75
157 158 1.381928 TATCTCCCACGTGTCGAGGC 61.382 60.000 22.62 0.00 36.35 4.70
158 159 1.319541 ATATCTCCCACGTGTCGAGG 58.680 55.000 22.62 14.20 37.35 4.63
159 160 2.095668 GCTATATCTCCCACGTGTCGAG 60.096 54.545 15.65 17.66 0.00 4.04
160 161 1.878088 GCTATATCTCCCACGTGTCGA 59.122 52.381 15.65 8.55 0.00 4.20
161 162 1.068472 GGCTATATCTCCCACGTGTCG 60.068 57.143 15.65 4.04 0.00 4.35
162 163 1.068472 CGGCTATATCTCCCACGTGTC 60.068 57.143 15.65 0.00 0.00 3.67
163 164 0.959553 CGGCTATATCTCCCACGTGT 59.040 55.000 15.65 0.00 0.00 4.49
164 165 0.388649 GCGGCTATATCTCCCACGTG 60.389 60.000 9.08 9.08 0.00 4.49
165 166 0.826256 TGCGGCTATATCTCCCACGT 60.826 55.000 0.00 0.00 0.00 4.49
166 167 0.532573 ATGCGGCTATATCTCCCACG 59.467 55.000 0.00 0.00 0.00 4.94
167 168 1.469940 CGATGCGGCTATATCTCCCAC 60.470 57.143 0.00 0.00 0.00 4.61
168 169 0.817654 CGATGCGGCTATATCTCCCA 59.182 55.000 0.00 0.00 0.00 4.37
169 170 0.818296 ACGATGCGGCTATATCTCCC 59.182 55.000 0.00 0.00 0.00 4.30
170 171 1.469940 CCACGATGCGGCTATATCTCC 60.470 57.143 0.00 0.00 0.00 3.71
171 172 1.472878 TCCACGATGCGGCTATATCTC 59.527 52.381 0.00 0.00 0.00 2.75
172 173 1.202582 GTCCACGATGCGGCTATATCT 59.797 52.381 0.00 0.00 0.00 1.98
173 174 1.630148 GTCCACGATGCGGCTATATC 58.370 55.000 0.00 0.00 0.00 1.63
174 175 0.109272 CGTCCACGATGCGGCTATAT 60.109 55.000 0.00 0.00 43.02 0.86
175 176 1.284715 CGTCCACGATGCGGCTATA 59.715 57.895 0.00 0.00 43.02 1.31
176 177 2.027605 CGTCCACGATGCGGCTAT 59.972 61.111 0.00 0.00 43.02 2.97
177 178 1.655885 TAACGTCCACGATGCGGCTA 61.656 55.000 6.03 0.00 43.02 3.93
178 179 2.997075 TAACGTCCACGATGCGGCT 61.997 57.895 6.03 0.00 43.02 5.52
179 180 2.507547 TAACGTCCACGATGCGGC 60.508 61.111 6.03 0.00 43.02 6.53
180 181 0.804544 ATGTAACGTCCACGATGCGG 60.805 55.000 6.03 0.00 43.02 5.69
181 182 0.996462 AATGTAACGTCCACGATGCG 59.004 50.000 6.03 0.00 43.02 4.73
182 183 3.160545 CAAAATGTAACGTCCACGATGC 58.839 45.455 6.03 0.00 43.02 3.91
183 184 3.120338 AGCAAAATGTAACGTCCACGATG 60.120 43.478 6.03 0.00 43.02 3.84
184 185 3.071479 AGCAAAATGTAACGTCCACGAT 58.929 40.909 6.03 0.00 43.02 3.73
185 186 2.485903 AGCAAAATGTAACGTCCACGA 58.514 42.857 6.03 0.00 43.02 4.35
186 187 2.961522 AGCAAAATGTAACGTCCACG 57.038 45.000 0.00 0.00 46.33 4.94
187 188 6.432107 TCTTAAAGCAAAATGTAACGTCCAC 58.568 36.000 0.00 0.00 0.00 4.02
188 189 6.621316 TCTTAAAGCAAAATGTAACGTCCA 57.379 33.333 0.00 0.00 0.00 4.02
189 190 7.593644 ACATTCTTAAAGCAAAATGTAACGTCC 59.406 33.333 0.00 0.00 39.78 4.79
190 191 8.502161 ACATTCTTAAAGCAAAATGTAACGTC 57.498 30.769 0.00 0.00 39.78 4.34
191 192 7.593644 GGACATTCTTAAAGCAAAATGTAACGT 59.406 33.333 0.00 0.00 41.18 3.99
192 193 7.593273 TGGACATTCTTAAAGCAAAATGTAACG 59.407 33.333 0.00 0.00 41.18 3.18
193 194 8.810652 TGGACATTCTTAAAGCAAAATGTAAC 57.189 30.769 0.00 0.00 41.18 2.50
194 195 9.255304 GTTGGACATTCTTAAAGCAAAATGTAA 57.745 29.630 0.00 0.00 41.18 2.41
195 196 7.870445 GGTTGGACATTCTTAAAGCAAAATGTA 59.130 33.333 0.00 0.00 41.18 2.29
196 197 6.705825 GGTTGGACATTCTTAAAGCAAAATGT 59.294 34.615 0.00 0.00 43.15 2.71
197 198 6.705381 TGGTTGGACATTCTTAAAGCAAAATG 59.295 34.615 0.00 0.00 35.68 2.32
233 234 4.335037 GTGGAGAATCTTTCATGCTCCTTC 59.665 45.833 9.62 0.95 44.23 3.46
290 291 6.409120 GGGGTGTTGGCCATCATTAATATTTT 60.409 38.462 19.23 0.00 0.00 1.82
291 292 5.071653 GGGGTGTTGGCCATCATTAATATTT 59.928 40.000 19.23 0.00 0.00 1.40
293 294 4.140710 AGGGGTGTTGGCCATCATTAATAT 60.141 41.667 19.23 2.22 0.00 1.28
305 306 3.636764 CCTAAAATCATAGGGGTGTTGGC 59.363 47.826 0.00 0.00 39.07 4.52
318 319 6.588719 AACTTATGTGCAAGCCTAAAATCA 57.411 33.333 0.00 0.00 0.00 2.57
349 350 2.027625 CCGGTCGCTTTGAGTGGTC 61.028 63.158 0.00 0.00 0.00 4.02
357 358 2.668550 GGAGCAACCGGTCGCTTT 60.669 61.111 23.34 0.00 40.71 3.51
426 430 4.425577 AAGATTAAGCGCAACTTGAAGG 57.574 40.909 11.47 0.00 39.58 3.46
538 721 2.158928 GCTGCAAGAGATCAGAGGTGAT 60.159 50.000 0.00 0.00 41.12 3.06
546 729 0.975556 TACCGGGCTGCAAGAGATCA 60.976 55.000 6.32 0.00 34.07 2.92
593 776 4.148348 GTCGAACGATATACTACGTACGGT 59.852 45.833 21.06 11.23 41.87 4.83
599 782 5.254088 GGCTATGTCGAACGATATACTACG 58.746 45.833 8.99 0.00 0.00 3.51
600 783 5.254088 CGGCTATGTCGAACGATATACTAC 58.746 45.833 8.99 3.68 29.41 2.73
601 784 4.330894 CCGGCTATGTCGAACGATATACTA 59.669 45.833 8.99 0.00 29.41 1.82
602 785 3.126514 CCGGCTATGTCGAACGATATACT 59.873 47.826 8.99 0.00 29.41 2.12
603 786 3.423571 CCGGCTATGTCGAACGATATAC 58.576 50.000 8.99 7.07 29.41 1.47
604 787 2.159476 GCCGGCTATGTCGAACGATATA 60.159 50.000 22.15 11.69 29.41 0.86
605 788 1.402456 GCCGGCTATGTCGAACGATAT 60.402 52.381 22.15 10.74 29.41 1.63
614 797 4.175337 TGGCTGGCCGGCTATGTC 62.175 66.667 34.76 18.93 39.42 3.06
882 1066 3.900784 AAGTCGTCGTCGTCGTCGC 62.901 63.158 15.28 11.00 44.86 5.19
1075 1263 7.202195 GGGAGGGTGTTTTCCTATCTAACATAT 60.202 40.741 0.00 0.00 34.63 1.78
1078 1266 4.226620 GGGAGGGTGTTTTCCTATCTAACA 59.773 45.833 0.00 0.00 34.21 2.41
1079 1267 4.384978 GGGGAGGGTGTTTTCCTATCTAAC 60.385 50.000 0.00 0.00 34.21 2.34
1082 1270 2.206223 GGGGAGGGTGTTTTCCTATCT 58.794 52.381 0.00 0.00 34.21 1.98
1085 1273 2.143231 AAGGGGAGGGTGTTTTCCTA 57.857 50.000 0.00 0.00 34.21 2.94
1087 1275 2.097110 AAAAGGGGAGGGTGTTTTCC 57.903 50.000 0.00 0.00 0.00 3.13
1088 1276 3.035363 TCAAAAAGGGGAGGGTGTTTTC 58.965 45.455 0.00 0.00 0.00 2.29
1089 1277 3.123392 TCAAAAAGGGGAGGGTGTTTT 57.877 42.857 0.00 0.00 0.00 2.43
1090 1278 2.858787 TCAAAAAGGGGAGGGTGTTT 57.141 45.000 0.00 0.00 0.00 2.83
1091 1279 2.608623 CATCAAAAAGGGGAGGGTGTT 58.391 47.619 0.00 0.00 0.00 3.32
1092 1280 1.827245 GCATCAAAAAGGGGAGGGTGT 60.827 52.381 0.00 0.00 0.00 4.16
1097 1285 2.025510 AGAGGAGCATCAAAAAGGGGAG 60.026 50.000 0.00 0.00 36.25 4.30
1119 1307 1.150567 GATACAGCACGGCAGCTCTG 61.151 60.000 0.00 4.81 44.54 3.35
1161 1357 3.621268 CCAGAACGGAAGCGATTAAATGA 59.379 43.478 0.00 0.00 36.56 2.57
1170 1366 2.030562 ACCACCAGAACGGAAGCG 59.969 61.111 0.00 0.00 38.63 4.68
1175 1371 2.507110 ATCGAGCACCACCAGAACGG 62.507 60.000 0.00 0.00 42.50 4.44
1331 1535 8.903820 GCCTTGATATAACTTCAGTTAACCAAT 58.096 33.333 0.88 0.00 42.93 3.16
1402 1626 5.700402 ATTCCTCTACTACCAACAGCAAT 57.300 39.130 0.00 0.00 0.00 3.56
1478 1705 5.594317 AGAGTGTTCAGCTAACCACATTTTT 59.406 36.000 10.36 0.00 37.27 1.94
1479 1706 5.009010 CAGAGTGTTCAGCTAACCACATTTT 59.991 40.000 10.36 0.00 37.27 1.82
1642 1946 8.410912 AGTTCCTTTTTCAACTAAACCACATAC 58.589 33.333 0.00 0.00 30.80 2.39
1700 2012 4.715534 TCTCAACATTGAACCCTGGTAA 57.284 40.909 0.00 0.00 36.64 2.85
1704 2016 5.067674 TGAACTTTCTCAACATTGAACCCTG 59.932 40.000 0.00 0.00 36.64 4.45
1896 2209 7.552458 AAATTTCATTTGAAAGGTCAACCAC 57.448 32.000 11.07 0.00 45.87 4.16
2133 2483 3.261354 CTGGGTTTGGGTCCCTGT 58.739 61.111 10.00 0.00 44.84 4.00
2156 2506 5.754890 GCACCTTAATTTTTGCCATCATAGG 59.245 40.000 0.00 0.00 0.00 2.57
2157 2507 6.833342 GCACCTTAATTTTTGCCATCATAG 57.167 37.500 0.00 0.00 0.00 2.23
2190 2549 3.138304 TGCGCTGAAGAACTAAATGTGT 58.862 40.909 9.73 0.00 0.00 3.72
2191 2550 3.811722 TGCGCTGAAGAACTAAATGTG 57.188 42.857 9.73 0.00 0.00 3.21
2192 2551 5.178797 ACTATGCGCTGAAGAACTAAATGT 58.821 37.500 9.73 0.00 0.00 2.71
2981 3457 2.026356 TGAGTGGGGTGGATGTACAATG 60.026 50.000 0.00 0.00 0.00 2.82
3448 3928 6.560003 TCATTCACCTACAGTCCATAACAT 57.440 37.500 0.00 0.00 0.00 2.71
3528 4008 6.406177 GGTTCTCGTATACTATCACAACCCAA 60.406 42.308 0.56 0.00 0.00 4.12
3638 4118 2.511218 TCAAATCATAGAGGCCAAGGCT 59.489 45.455 5.01 0.00 42.48 4.58
3853 4333 6.226787 TCTTCTTTCTTTCTGGTGTCATCTC 58.773 40.000 0.00 0.00 0.00 2.75
3886 4367 3.585289 TGTGGCTATAAGGTGTTCCTCAA 59.415 43.478 0.00 0.00 44.35 3.02
3909 4390 4.052159 AGCTTATCACGAGAACTGGATG 57.948 45.455 0.00 0.00 0.00 3.51
3918 4399 2.279582 ACACCGAAGCTTATCACGAG 57.720 50.000 0.00 0.00 0.00 4.18
4176 4657 4.179599 GAGAGGGGAGGGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
4177 4658 2.201734 AAAGAGAGGGGAGGGGGAGG 62.202 65.000 0.00 0.00 0.00 4.30
4178 4659 0.253394 AAAAGAGAGGGGAGGGGGAG 60.253 60.000 0.00 0.00 0.00 4.30
4179 4660 0.550147 CAAAAGAGAGGGGAGGGGGA 60.550 60.000 0.00 0.00 0.00 4.81
4180 4661 0.846870 ACAAAAGAGAGGGGAGGGGG 60.847 60.000 0.00 0.00 0.00 5.40
4181 4662 0.621082 GACAAAAGAGAGGGGAGGGG 59.379 60.000 0.00 0.00 0.00 4.79
4182 4663 0.250513 CGACAAAAGAGAGGGGAGGG 59.749 60.000 0.00 0.00 0.00 4.30
4183 4664 0.977395 ACGACAAAAGAGAGGGGAGG 59.023 55.000 0.00 0.00 0.00 4.30
4184 4665 2.826725 ACTACGACAAAAGAGAGGGGAG 59.173 50.000 0.00 0.00 0.00 4.30
4185 4666 2.885616 ACTACGACAAAAGAGAGGGGA 58.114 47.619 0.00 0.00 0.00 4.81
4186 4667 3.006537 TCAACTACGACAAAAGAGAGGGG 59.993 47.826 0.00 0.00 0.00 4.79
4187 4668 3.988517 GTCAACTACGACAAAAGAGAGGG 59.011 47.826 0.00 0.00 35.88 4.30
4188 4669 4.681942 CAGTCAACTACGACAAAAGAGAGG 59.318 45.833 0.00 0.00 38.43 3.69
4189 4670 5.282510 ACAGTCAACTACGACAAAAGAGAG 58.717 41.667 0.00 0.00 38.43 3.20
4190 4671 5.258456 ACAGTCAACTACGACAAAAGAGA 57.742 39.130 0.00 0.00 38.43 3.10
4191 4672 5.968387 AACAGTCAACTACGACAAAAGAG 57.032 39.130 0.00 0.00 38.43 2.85
4192 4673 5.064198 CCAAACAGTCAACTACGACAAAAGA 59.936 40.000 0.00 0.00 38.43 2.52
4193 4674 5.163794 ACCAAACAGTCAACTACGACAAAAG 60.164 40.000 0.00 0.00 38.43 2.27
4194 4675 4.696402 ACCAAACAGTCAACTACGACAAAA 59.304 37.500 0.00 0.00 38.43 2.44
4195 4676 4.255301 ACCAAACAGTCAACTACGACAAA 58.745 39.130 0.00 0.00 38.43 2.83
4196 4677 3.864243 ACCAAACAGTCAACTACGACAA 58.136 40.909 0.00 0.00 38.43 3.18
4197 4678 3.530265 ACCAAACAGTCAACTACGACA 57.470 42.857 0.00 0.00 38.43 4.35
4198 4679 4.569564 AGAAACCAAACAGTCAACTACGAC 59.430 41.667 0.00 0.00 36.08 4.34
4199 4680 4.569162 CAGAAACCAAACAGTCAACTACGA 59.431 41.667 0.00 0.00 0.00 3.43
4200 4681 4.260620 CCAGAAACCAAACAGTCAACTACG 60.261 45.833 0.00 0.00 0.00 3.51
4232 4913 1.486726 GCTAGGGACACCAGCTGTAAT 59.513 52.381 13.81 0.00 40.13 1.89
4235 4916 2.294078 GGCTAGGGACACCAGCTGT 61.294 63.158 13.81 0.00 39.41 4.40
4236 4917 1.965754 GAGGCTAGGGACACCAGCTG 61.966 65.000 6.78 6.78 39.41 4.24
4237 4918 1.687493 GAGGCTAGGGACACCAGCT 60.687 63.158 0.00 0.00 39.41 4.24
4239 4920 1.965754 GCAGAGGCTAGGGACACCAG 61.966 65.000 0.00 0.00 36.65 4.00
4240 4921 1.990060 GCAGAGGCTAGGGACACCA 60.990 63.158 0.00 0.00 36.65 4.17
4269 4958 2.770802 AGAGAAGACCATACATGCTGCT 59.229 45.455 0.00 0.00 0.00 4.24
4299 4989 1.341877 CCATAACCCAGTGGAATGCCA 60.342 52.381 11.95 0.00 43.47 4.92
4300 4990 1.402787 CCATAACCCAGTGGAATGCC 58.597 55.000 11.95 0.00 37.72 4.40
4301 4991 0.746659 GCCATAACCCAGTGGAATGC 59.253 55.000 11.95 0.42 37.72 3.56
4302 4992 2.142356 TGCCATAACCCAGTGGAATG 57.858 50.000 11.95 11.04 37.72 2.67
4303 4993 4.747265 ATATGCCATAACCCAGTGGAAT 57.253 40.909 11.95 0.74 37.52 3.01
4304 4994 4.079500 TGAATATGCCATAACCCAGTGGAA 60.080 41.667 11.95 0.00 37.72 3.53
4305 4995 3.461458 TGAATATGCCATAACCCAGTGGA 59.539 43.478 11.95 0.00 37.72 4.02
4306 4996 3.822735 CTGAATATGCCATAACCCAGTGG 59.177 47.826 0.63 0.63 38.55 4.00
4323 5270 2.293677 TGAATGTAGACGCGCTGAAT 57.706 45.000 5.73 0.16 0.00 2.57
4328 5275 6.076040 CGTTATCTATATGAATGTAGACGCGC 60.076 42.308 5.73 0.00 34.10 6.86
4345 5292 8.635328 TGCCAAGTTATCTATGTTCGTTATCTA 58.365 33.333 0.00 0.00 0.00 1.98
4352 5299 5.696270 TGCTATGCCAAGTTATCTATGTTCG 59.304 40.000 0.00 0.00 0.00 3.95
4367 5314 2.280119 GGCGTCGATGCTATGCCA 60.280 61.111 27.56 0.00 46.42 4.92
4371 5318 2.162608 GTCTCATAGGCGTCGATGCTAT 59.837 50.000 27.56 19.10 34.52 2.97
4393 5346 6.937465 GGATCAGAGGGAGTATTATTTTCCAC 59.063 42.308 0.00 0.00 32.50 4.02
4413 5366 8.125978 ACAAGAAAAATTCAAGCTATGGATCA 57.874 30.769 0.00 0.00 0.00 2.92
4414 5367 8.992835 AACAAGAAAAATTCAAGCTATGGATC 57.007 30.769 0.00 0.00 0.00 3.36
4417 5370 9.912634 TTCTAACAAGAAAAATTCAAGCTATGG 57.087 29.630 0.00 0.00 0.00 2.74
4521 5474 1.512926 ACTGCTCAATCAACACGTCC 58.487 50.000 0.00 0.00 0.00 4.79
4533 5486 3.807209 GCCTAGGTGAGAAAAACTGCTCA 60.807 47.826 11.31 0.00 38.72 4.26
4537 5490 3.425162 AGGCCTAGGTGAGAAAAACTG 57.575 47.619 1.29 0.00 0.00 3.16
4553 5506 2.433239 TCTCCTATAACCGAACAAGGCC 59.567 50.000 0.00 0.00 33.69 5.19
4555 5508 7.052142 ACTAATCTCCTATAACCGAACAAGG 57.948 40.000 0.00 0.00 37.30 3.61
4560 5513 5.541484 GGGGAACTAATCTCCTATAACCGAA 59.459 44.000 0.00 0.00 46.27 4.30
4561 5514 5.082425 GGGGAACTAATCTCCTATAACCGA 58.918 45.833 0.00 0.00 46.27 4.69
4562 5515 5.402997 GGGGAACTAATCTCCTATAACCG 57.597 47.826 0.00 0.00 46.27 4.44
4582 5535 0.103930 TGATCCCCCAATCCCTAGGG 60.104 60.000 23.22 23.22 45.04 3.53
4583 5536 1.425448 GTTGATCCCCCAATCCCTAGG 59.575 57.143 0.06 0.06 0.00 3.02
4584 5537 2.135189 TGTTGATCCCCCAATCCCTAG 58.865 52.381 0.00 0.00 0.00 3.02
4585 5538 1.850345 GTGTTGATCCCCCAATCCCTA 59.150 52.381 0.00 0.00 0.00 3.53
4596 5549 0.676782 CGGGGTTCAGGTGTTGATCC 60.677 60.000 0.00 0.00 42.58 3.36
4630 5583 0.459899 CGGATGGGAGATCGTGACAA 59.540 55.000 0.00 0.00 0.00 3.18
4636 5589 2.353803 GGGTTAATCGGATGGGAGATCG 60.354 54.545 0.00 0.00 0.00 3.69
4647 5600 2.893404 CGCCGTGGGGTTAATCGG 60.893 66.667 0.00 0.00 44.86 4.18
4723 5677 2.531483 ATCAGCTCCTACCCACCCGT 62.531 60.000 0.00 0.00 0.00 5.28
4724 5678 1.338136 AATCAGCTCCTACCCACCCG 61.338 60.000 0.00 0.00 0.00 5.28
4749 5715 1.788229 AACCCCTCAAAACCACAAGG 58.212 50.000 0.00 0.00 42.21 3.61
4751 5717 1.834263 CCAAACCCCTCAAAACCACAA 59.166 47.619 0.00 0.00 0.00 3.33
4752 5718 1.490574 CCAAACCCCTCAAAACCACA 58.509 50.000 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.