Multiple sequence alignment - TraesCS6D01G246500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G246500 chr6D 100.000 4239 0 0 1 4239 349029803 349034041 0.000000e+00 7829.0
1 TraesCS6D01G246500 chr6D 92.778 3240 121 21 64 3268 348859846 348863007 0.000000e+00 4582.0
2 TraesCS6D01G246500 chr6D 95.156 1342 63 2 1931 3271 350204794 350203454 0.000000e+00 2117.0
3 TraesCS6D01G246500 chr6D 93.012 1388 79 11 1397 2782 350084151 350082780 0.000000e+00 2010.0
4 TraesCS6D01G246500 chr6D 92.201 1077 57 12 2755 3806 348994618 348995692 0.000000e+00 1498.0
5 TraesCS6D01G246500 chr6D 90.472 1081 48 10 2751 3802 349175691 349176745 0.000000e+00 1375.0
6 TraesCS6D01G246500 chr6D 98.498 466 7 0 2775 3240 350063445 350062980 0.000000e+00 822.0
7 TraesCS6D01G246500 chr6D 94.670 469 23 2 3341 3807 348863144 348863612 0.000000e+00 726.0
8 TraesCS6D01G246500 chr6D 91.648 455 33 5 3341 3791 348839172 348839625 3.600000e-175 625.0
9 TraesCS6D01G246500 chr6D 86.068 323 22 7 3341 3660 349215332 349215634 4.090000e-85 326.0
10 TraesCS6D01G246500 chr6D 81.122 196 18 14 867 1051 350084388 350084201 5.720000e-29 139.0
11 TraesCS6D01G246500 chr6A 90.561 3528 158 62 74 3504 495155592 495152143 0.000000e+00 4508.0
12 TraesCS6D01G246500 chr6A 89.978 2305 160 43 985 3268 493755700 493757954 0.000000e+00 2911.0
13 TraesCS6D01G246500 chr6A 94.441 1853 88 12 1394 3244 494046784 494048623 0.000000e+00 2837.0
14 TraesCS6D01G246500 chr6A 93.906 1838 85 14 1435 3268 493842324 493844138 0.000000e+00 2748.0
15 TraesCS6D01G246500 chr6A 88.619 659 54 14 935 1591 494881269 494880630 0.000000e+00 782.0
16 TraesCS6D01G246500 chr6A 82.885 707 31 24 77 760 494881931 494881292 1.720000e-153 553.0
17 TraesCS6D01G246500 chr6A 84.742 426 13 19 3131 3504 494878443 494878018 3.090000e-101 379.0
18 TraesCS6D01G246500 chr6A 90.099 202 17 3 3607 3806 494870782 494870582 4.200000e-65 259.0
19 TraesCS6D01G246500 chr6A 90.050 201 18 2 3608 3806 495144913 495144713 4.200000e-65 259.0
20 TraesCS6D01G246500 chr6A 97.248 109 3 0 3501 3609 494872969 494872861 7.240000e-43 185.0
21 TraesCS6D01G246500 chr6A 97.248 109 3 0 3501 3609 495147073 495146965 7.240000e-43 185.0
22 TraesCS6D01G246500 chr6A 92.537 67 5 0 986 1052 494046678 494046744 3.490000e-16 97.1
23 TraesCS6D01G246500 chr6A 83.908 87 5 2 3259 3336 494048663 494048749 1.630000e-09 75.0
24 TraesCS6D01G246500 chr6A 93.478 46 2 1 3807 3851 234091387 234091342 2.740000e-07 67.6
25 TraesCS6D01G246500 chr6B 94.427 2494 104 17 1339 3802 530852476 530849988 0.000000e+00 3803.0
26 TraesCS6D01G246500 chr6B 93.912 1889 104 6 1386 3268 529773811 529775694 0.000000e+00 2841.0
27 TraesCS6D01G246500 chr6B 97.057 1665 48 1 1605 3268 529889858 529891522 0.000000e+00 2802.0
28 TraesCS6D01G246500 chr6B 81.914 1620 239 33 1643 3241 52086465 52088051 0.000000e+00 1319.0
29 TraesCS6D01G246500 chr6B 86.859 799 40 27 1 780 530853803 530853051 0.000000e+00 833.0
30 TraesCS6D01G246500 chr6B 86.200 529 36 21 778 1281 530853015 530852499 4.820000e-149 538.0
31 TraesCS6D01G246500 chr6B 88.194 144 4 6 3340 3471 564063467 564063325 4.390000e-35 159.0
32 TraesCS6D01G246500 chr6B 78.571 224 26 15 833 1050 529889383 529889590 1.240000e-25 128.0
33 TraesCS6D01G246500 chr5B 80.672 238 34 5 3797 4023 673942984 673942748 1.570000e-39 174.0
34 TraesCS6D01G246500 chr1B 81.250 224 32 3 3807 4020 337152218 337152441 5.630000e-39 172.0
35 TraesCS6D01G246500 chr1B 90.196 51 0 4 3804 3849 549379279 549379329 1.270000e-05 62.1
36 TraesCS6D01G246500 chr4A 95.349 43 1 1 3801 3842 537997501 537997459 2.740000e-07 67.6
37 TraesCS6D01G246500 chr2B 95.238 42 2 0 3806 3847 630769083 630769042 2.740000e-07 67.6
38 TraesCS6D01G246500 chr2B 94.872 39 2 0 3802 3840 182034005 182034043 1.270000e-05 62.1
39 TraesCS6D01G246500 chr2B 92.857 42 3 0 3807 3848 762246959 762246918 1.270000e-05 62.1
40 TraesCS6D01G246500 chr4B 90.698 43 2 2 3807 3847 637422410 637422368 5.920000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G246500 chr6D 349029803 349034041 4238 False 7829.000000 7829 100.000000 1 4239 1 chr6D.!!$F3 4238
1 TraesCS6D01G246500 chr6D 348859846 348863612 3766 False 2654.000000 4582 93.724000 64 3807 2 chr6D.!!$F6 3743
2 TraesCS6D01G246500 chr6D 350203454 350204794 1340 True 2117.000000 2117 95.156000 1931 3271 1 chr6D.!!$R2 1340
3 TraesCS6D01G246500 chr6D 348994618 348995692 1074 False 1498.000000 1498 92.201000 2755 3806 1 chr6D.!!$F2 1051
4 TraesCS6D01G246500 chr6D 349175691 349176745 1054 False 1375.000000 1375 90.472000 2751 3802 1 chr6D.!!$F4 1051
5 TraesCS6D01G246500 chr6D 350082780 350084388 1608 True 1074.500000 2010 87.067000 867 2782 2 chr6D.!!$R3 1915
6 TraesCS6D01G246500 chr6A 495152143 495155592 3449 True 4508.000000 4508 90.561000 74 3504 1 chr6A.!!$R2 3430
7 TraesCS6D01G246500 chr6A 493755700 493757954 2254 False 2911.000000 2911 89.978000 985 3268 1 chr6A.!!$F1 2283
8 TraesCS6D01G246500 chr6A 493842324 493844138 1814 False 2748.000000 2748 93.906000 1435 3268 1 chr6A.!!$F2 1833
9 TraesCS6D01G246500 chr6A 494046678 494048749 2071 False 1003.033333 2837 90.295333 986 3336 3 chr6A.!!$F3 2350
10 TraesCS6D01G246500 chr6A 494878018 494881931 3913 True 571.333333 782 85.415333 77 3504 3 chr6A.!!$R4 3427
11 TraesCS6D01G246500 chr6A 494870582 494872969 2387 True 222.000000 259 93.673500 3501 3806 2 chr6A.!!$R3 305
12 TraesCS6D01G246500 chr6A 495144713 495147073 2360 True 222.000000 259 93.649000 3501 3806 2 chr6A.!!$R5 305
13 TraesCS6D01G246500 chr6B 529773811 529775694 1883 False 2841.000000 2841 93.912000 1386 3268 1 chr6B.!!$F2 1882
14 TraesCS6D01G246500 chr6B 530849988 530853803 3815 True 1724.666667 3803 89.162000 1 3802 3 chr6B.!!$R2 3801
15 TraesCS6D01G246500 chr6B 529889383 529891522 2139 False 1465.000000 2802 87.814000 833 3268 2 chr6B.!!$F3 2435
16 TraesCS6D01G246500 chr6B 52086465 52088051 1586 False 1319.000000 1319 81.914000 1643 3241 1 chr6B.!!$F1 1598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 419 0.030908 CCTACCATCGTTCTCTCCGC 59.969 60.000 0.00 0.00 0.00 5.54 F
449 488 0.176449 CGCCACTGGATGAGACATCA 59.824 55.000 12.66 0.00 40.50 3.07 F
545 588 1.335872 GCAAATCACCACGTTTCTGGG 60.336 52.381 0.00 0.00 35.34 4.45 F
1663 1959 1.522668 CAGTGTTCGAATGCCTGGAA 58.477 50.000 0.00 0.00 0.00 3.53 F
2863 3178 0.605319 TCGTGGAAATGAAGCGGCTT 60.605 50.000 16.36 16.36 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1281 1491 0.120377 TAGGAAAGGAAGGGGCCTGA 59.880 55.000 0.84 0.0 38.58 3.86 R
1309 1519 0.599991 GACTGTGACGTGGATGTGCA 60.600 55.000 0.00 0.0 0.00 4.57 R
1715 2011 2.351276 GTTGGTGCCGTGGAGGAT 59.649 61.111 0.00 0.0 45.00 3.24 R
3235 4287 2.182842 GCCCTTTGCGAGCGATCAT 61.183 57.895 0.00 0.0 0.00 2.45 R
4011 7257 0.032952 TATACATCGGTCGGCTTGGC 59.967 55.000 0.00 0.0 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.003480 GGAACGTCTGAATGAAGGAAGG 58.997 50.000 0.00 0.00 0.00 3.46
24 25 3.306780 GGAACGTCTGAATGAAGGAAGGA 60.307 47.826 0.00 0.00 0.00 3.36
25 26 4.315803 GAACGTCTGAATGAAGGAAGGAA 58.684 43.478 0.00 0.00 0.00 3.36
26 27 3.931578 ACGTCTGAATGAAGGAAGGAAG 58.068 45.455 0.00 0.00 0.00 3.46
52 53 1.233019 CAGCCTGACTGTGTTTGGAG 58.767 55.000 0.00 0.00 41.86 3.86
59 60 5.123227 CCTGACTGTGTTTGGAGACTTTTA 58.877 41.667 0.00 0.00 0.00 1.52
80 89 3.275617 AGTGTGTAGGTGCTCAACAAA 57.724 42.857 0.00 0.00 0.00 2.83
134 145 1.274728 CCTTAGAGCTGGGATCATCGG 59.725 57.143 0.00 0.00 0.00 4.18
188 217 1.278127 CGAGGGGGTCAAATACACTGT 59.722 52.381 0.00 0.00 0.00 3.55
219 248 4.329392 TCAGCACACATTGATTGACTGAT 58.671 39.130 0.00 0.00 30.79 2.90
288 319 3.669251 ACAGTTCAGAAGCTCACCTAC 57.331 47.619 0.00 0.00 0.00 3.18
301 332 3.437049 GCTCACCTACAAACTGAATGGAC 59.563 47.826 0.00 0.00 0.00 4.02
323 354 6.749118 GGACACGAAAATACTAGTACACGATT 59.251 38.462 19.15 4.90 0.00 3.34
384 419 0.030908 CCTACCATCGTTCTCTCCGC 59.969 60.000 0.00 0.00 0.00 5.54
449 488 0.176449 CGCCACTGGATGAGACATCA 59.824 55.000 12.66 0.00 40.50 3.07
543 586 3.044986 CAAGCAAATCACCACGTTTCTG 58.955 45.455 0.00 0.00 0.00 3.02
544 587 1.608590 AGCAAATCACCACGTTTCTGG 59.391 47.619 0.00 0.00 37.33 3.86
545 588 1.335872 GCAAATCACCACGTTTCTGGG 60.336 52.381 0.00 0.00 35.34 4.45
547 590 2.185004 AATCACCACGTTTCTGGGAG 57.815 50.000 0.00 0.00 35.34 4.30
549 592 1.707106 TCACCACGTTTCTGGGAGTA 58.293 50.000 0.00 0.00 35.34 2.59
550 593 2.253610 TCACCACGTTTCTGGGAGTAT 58.746 47.619 0.00 0.00 35.34 2.12
551 594 2.635915 TCACCACGTTTCTGGGAGTATT 59.364 45.455 0.00 0.00 35.34 1.89
552 595 3.833650 TCACCACGTTTCTGGGAGTATTA 59.166 43.478 0.00 0.00 35.34 0.98
553 596 4.468510 TCACCACGTTTCTGGGAGTATTAT 59.531 41.667 0.00 0.00 35.34 1.28
554 597 5.657745 TCACCACGTTTCTGGGAGTATTATA 59.342 40.000 0.00 0.00 35.34 0.98
555 598 5.751990 CACCACGTTTCTGGGAGTATTATAC 59.248 44.000 0.00 0.00 35.34 1.47
556 599 4.980434 CCACGTTTCTGGGAGTATTATACG 59.020 45.833 0.00 0.00 0.00 3.06
557 600 5.450965 CCACGTTTCTGGGAGTATTATACGT 60.451 44.000 0.00 0.00 39.91 3.57
558 601 6.238731 CCACGTTTCTGGGAGTATTATACGTA 60.239 42.308 0.00 0.00 37.58 3.57
559 602 6.634436 CACGTTTCTGGGAGTATTATACGTAC 59.366 42.308 0.00 0.00 37.58 3.67
560 603 6.543831 ACGTTTCTGGGAGTATTATACGTACT 59.456 38.462 0.00 0.00 37.86 2.73
561 604 7.067494 ACGTTTCTGGGAGTATTATACGTACTT 59.933 37.037 0.00 0.00 37.86 2.24
562 605 8.559536 CGTTTCTGGGAGTATTATACGTACTTA 58.440 37.037 0.00 0.00 32.77 2.24
563 606 9.670719 GTTTCTGGGAGTATTATACGTACTTAC 57.329 37.037 0.00 0.37 32.77 2.34
642 685 2.993264 AGTGGCTGCATGCAACCC 60.993 61.111 31.90 27.44 46.65 4.11
973 1115 3.181506 GGATTAGCTCAAACTTCCGCTTG 60.182 47.826 0.00 0.00 34.14 4.01
1089 1250 2.440430 TCCTCTTCCTCCTCCGCG 60.440 66.667 0.00 0.00 0.00 6.46
1090 1251 4.214327 CCTCTTCCTCCTCCGCGC 62.214 72.222 0.00 0.00 0.00 6.86
1209 1400 2.379972 CACCTCCATTAGACCGAGTCT 58.620 52.381 10.71 10.71 45.54 3.24
1227 1418 6.921857 CCGAGTCTTAACTTACAAGAACAGAA 59.078 38.462 0.00 0.00 35.28 3.02
1281 1491 7.148154 ACACGTGGTTAATACAACATGCATATT 60.148 33.333 21.57 0.00 24.01 1.28
1309 1519 4.166919 CCCCTTCCTTTCCTAATCAGACAT 59.833 45.833 0.00 0.00 0.00 3.06
1320 1542 1.660167 ATCAGACATGCACATCCACG 58.340 50.000 0.00 0.00 0.00 4.94
1359 1582 4.100035 AGCATCATATCCAGAACTCGTCAA 59.900 41.667 0.00 0.00 0.00 3.18
1430 1653 7.228308 GCTAACAATTCCTGCAATCTATCTCTT 59.772 37.037 0.00 0.00 0.00 2.85
1447 1670 3.942829 CTCTTTTACAGAGTCATGGCCA 58.057 45.455 8.56 8.56 43.96 5.36
1566 1789 7.452880 AAGCAAAGCTACATGTTCATCTAAA 57.547 32.000 2.30 0.00 38.25 1.85
1573 1796 9.846248 AAGCTACATGTTCATCTAAATGTTTTC 57.154 29.630 2.30 0.00 35.07 2.29
1582 1870 8.573035 GTTCATCTAAATGTTTTCCCAGTTACA 58.427 33.333 0.00 0.00 34.32 2.41
1663 1959 1.522668 CAGTGTTCGAATGCCTGGAA 58.477 50.000 0.00 0.00 0.00 3.53
1715 2011 0.834687 GGTGGTGTACCTGGAGACCA 60.835 60.000 0.00 5.89 46.51 4.02
2164 2461 1.111116 TCTCCGGTGTGTTCCTCGTT 61.111 55.000 0.00 0.00 0.00 3.85
2407 2704 4.344865 GACTCGCCCCAGCCCAAA 62.345 66.667 0.00 0.00 34.57 3.28
2863 3178 0.605319 TCGTGGAAATGAAGCGGCTT 60.605 50.000 16.36 16.36 0.00 4.35
3235 4287 0.532573 GGCTCAAGACGGTCATCTCA 59.467 55.000 11.27 0.00 0.00 3.27
3307 4430 5.646360 GGTGAACAGTAAATAGCTTAGCCAA 59.354 40.000 0.00 0.00 0.00 4.52
3337 4470 9.464714 CATATATACACAAGACACAGTAGGAAC 57.535 37.037 0.00 0.00 0.00 3.62
3339 4472 4.689612 ACACAAGACACAGTAGGAACAT 57.310 40.909 0.00 0.00 0.00 2.71
3473 4631 6.372659 GTGCTTCTCTTGTATTTCAATCCAGA 59.627 38.462 0.00 0.00 35.35 3.86
3480 4638 7.099764 TCTTGTATTTCAATCCAGAGACAGAC 58.900 38.462 0.00 0.00 35.35 3.51
3557 4716 9.875691 ATTCAGGTGCCTAAATATTTTTCTTTC 57.124 29.630 5.91 0.00 0.00 2.62
3699 6942 1.719780 GTCCTTTTCTATATCCGCGCG 59.280 52.381 25.67 25.67 0.00 6.86
3775 7021 7.961325 TCCCTAAATTTTCATTTGAAGTTGC 57.039 32.000 0.00 0.00 34.29 4.17
3776 7022 6.934083 TCCCTAAATTTTCATTTGAAGTTGCC 59.066 34.615 0.00 0.00 34.29 4.52
3783 7029 5.713792 TTCATTTGAAGTTGCCCGAATAA 57.286 34.783 0.00 0.00 0.00 1.40
3807 7053 8.523523 AAGTGGCCGTTTTTATTGTTATTTAC 57.476 30.769 0.00 0.00 0.00 2.01
3808 7054 7.888424 AGTGGCCGTTTTTATTGTTATTTACT 58.112 30.769 0.00 0.00 0.00 2.24
3809 7055 9.012161 AGTGGCCGTTTTTATTGTTATTTACTA 57.988 29.630 0.00 0.00 0.00 1.82
3810 7056 9.281075 GTGGCCGTTTTTATTGTTATTTACTAG 57.719 33.333 0.00 0.00 0.00 2.57
3811 7057 7.969508 TGGCCGTTTTTATTGTTATTTACTAGC 59.030 33.333 0.00 0.00 0.00 3.42
3812 7058 7.969508 GGCCGTTTTTATTGTTATTTACTAGCA 59.030 33.333 0.00 0.00 0.00 3.49
3813 7059 9.344309 GCCGTTTTTATTGTTATTTACTAGCAA 57.656 29.630 0.00 0.00 35.37 3.91
3822 7068 7.542534 TGTTATTTACTAGCAAACATACCCG 57.457 36.000 0.00 0.00 0.00 5.28
3823 7069 7.104939 TGTTATTTACTAGCAAACATACCCGT 58.895 34.615 0.00 0.00 0.00 5.28
3824 7070 7.064847 TGTTATTTACTAGCAAACATACCCGTG 59.935 37.037 0.00 0.00 0.00 4.94
3825 7071 1.734163 ACTAGCAAACATACCCGTGC 58.266 50.000 0.00 0.00 37.26 5.34
3826 7072 0.650512 CTAGCAAACATACCCGTGCG 59.349 55.000 0.00 0.00 41.90 5.34
3827 7073 0.037139 TAGCAAACATACCCGTGCGT 60.037 50.000 0.00 0.00 41.90 5.24
3828 7074 0.887387 AGCAAACATACCCGTGCGTT 60.887 50.000 0.00 0.00 41.90 4.84
3829 7075 0.727793 GCAAACATACCCGTGCGTTG 60.728 55.000 0.00 0.00 0.00 4.10
3830 7076 0.727793 CAAACATACCCGTGCGTTGC 60.728 55.000 0.00 0.00 0.00 4.17
3831 7077 1.167155 AAACATACCCGTGCGTTGCA 61.167 50.000 0.00 0.00 35.60 4.08
3832 7078 1.167155 AACATACCCGTGCGTTGCAA 61.167 50.000 0.00 0.00 41.47 4.08
3833 7079 1.154301 CATACCCGTGCGTTGCAAC 60.154 57.895 19.89 19.89 41.47 4.17
3865 7111 6.670695 AAAATATCAGATGGCATTAACCCC 57.329 37.500 0.00 0.00 0.00 4.95
3866 7112 2.276732 ATCAGATGGCATTAACCCCG 57.723 50.000 0.00 0.00 0.00 5.73
3867 7113 0.916086 TCAGATGGCATTAACCCCGT 59.084 50.000 0.00 0.00 0.00 5.28
3868 7114 2.120312 TCAGATGGCATTAACCCCGTA 58.880 47.619 0.00 0.00 0.00 4.02
3869 7115 2.506231 TCAGATGGCATTAACCCCGTAA 59.494 45.455 0.00 0.00 0.00 3.18
3870 7116 2.878406 CAGATGGCATTAACCCCGTAAG 59.122 50.000 0.00 0.00 0.00 2.34
3884 7130 1.997669 CGTAAGGCTGACTCAAGACC 58.002 55.000 0.00 0.00 0.00 3.85
3885 7131 1.404315 CGTAAGGCTGACTCAAGACCC 60.404 57.143 0.00 0.00 0.00 4.46
3886 7132 1.903183 GTAAGGCTGACTCAAGACCCT 59.097 52.381 0.00 0.00 0.00 4.34
3887 7133 2.327325 AAGGCTGACTCAAGACCCTA 57.673 50.000 0.00 0.00 0.00 3.53
3888 7134 2.559381 AGGCTGACTCAAGACCCTAT 57.441 50.000 0.00 0.00 0.00 2.57
3889 7135 3.689872 AGGCTGACTCAAGACCCTATA 57.310 47.619 0.00 0.00 0.00 1.31
3890 7136 3.995636 AGGCTGACTCAAGACCCTATAA 58.004 45.455 0.00 0.00 0.00 0.98
3891 7137 4.362677 AGGCTGACTCAAGACCCTATAAA 58.637 43.478 0.00 0.00 0.00 1.40
3892 7138 4.162509 AGGCTGACTCAAGACCCTATAAAC 59.837 45.833 0.00 0.00 0.00 2.01
3893 7139 4.443621 GCTGACTCAAGACCCTATAAACC 58.556 47.826 0.00 0.00 0.00 3.27
3894 7140 4.683671 GCTGACTCAAGACCCTATAAACCC 60.684 50.000 0.00 0.00 0.00 4.11
3895 7141 4.431378 TGACTCAAGACCCTATAAACCCA 58.569 43.478 0.00 0.00 0.00 4.51
3896 7142 5.036916 TGACTCAAGACCCTATAAACCCAT 58.963 41.667 0.00 0.00 0.00 4.00
3897 7143 5.104527 TGACTCAAGACCCTATAAACCCATG 60.105 44.000 0.00 0.00 0.00 3.66
3898 7144 4.137543 CTCAAGACCCTATAAACCCATGC 58.862 47.826 0.00 0.00 0.00 4.06
3899 7145 3.117663 TCAAGACCCTATAAACCCATGCC 60.118 47.826 0.00 0.00 0.00 4.40
3900 7146 2.498441 AGACCCTATAAACCCATGCCA 58.502 47.619 0.00 0.00 0.00 4.92
3901 7147 3.063650 AGACCCTATAAACCCATGCCAT 58.936 45.455 0.00 0.00 0.00 4.40
3902 7148 3.074538 AGACCCTATAAACCCATGCCATC 59.925 47.826 0.00 0.00 0.00 3.51
3903 7149 3.063650 ACCCTATAAACCCATGCCATCT 58.936 45.455 0.00 0.00 0.00 2.90
3904 7150 4.247814 ACCCTATAAACCCATGCCATCTA 58.752 43.478 0.00 0.00 0.00 1.98
3905 7151 4.857933 ACCCTATAAACCCATGCCATCTAT 59.142 41.667 0.00 0.00 0.00 1.98
3906 7152 5.044846 ACCCTATAAACCCATGCCATCTATC 60.045 44.000 0.00 0.00 0.00 2.08
3907 7153 5.192522 CCCTATAAACCCATGCCATCTATCT 59.807 44.000 0.00 0.00 0.00 1.98
3908 7154 6.352516 CCTATAAACCCATGCCATCTATCTC 58.647 44.000 0.00 0.00 0.00 2.75
3909 7155 5.848286 ATAAACCCATGCCATCTATCTCA 57.152 39.130 0.00 0.00 0.00 3.27
3910 7156 4.524802 AAACCCATGCCATCTATCTCAA 57.475 40.909 0.00 0.00 0.00 3.02
3911 7157 4.736611 AACCCATGCCATCTATCTCAAT 57.263 40.909 0.00 0.00 0.00 2.57
3912 7158 5.848286 AACCCATGCCATCTATCTCAATA 57.152 39.130 0.00 0.00 0.00 1.90
3913 7159 6.398655 AACCCATGCCATCTATCTCAATAT 57.601 37.500 0.00 0.00 0.00 1.28
3914 7160 6.398655 ACCCATGCCATCTATCTCAATATT 57.601 37.500 0.00 0.00 0.00 1.28
3915 7161 6.185511 ACCCATGCCATCTATCTCAATATTG 58.814 40.000 9.29 9.29 0.00 1.90
3916 7162 6.185511 CCCATGCCATCTATCTCAATATTGT 58.814 40.000 14.97 0.00 0.00 2.71
3917 7163 6.095021 CCCATGCCATCTATCTCAATATTGTG 59.905 42.308 14.97 12.69 0.00 3.33
3918 7164 6.404403 CCATGCCATCTATCTCAATATTGTGC 60.404 42.308 14.97 6.18 0.00 4.57
3919 7165 5.872963 TGCCATCTATCTCAATATTGTGCT 58.127 37.500 14.97 7.16 0.00 4.40
3920 7166 6.301486 TGCCATCTATCTCAATATTGTGCTT 58.699 36.000 14.97 6.67 0.00 3.91
3921 7167 6.429078 TGCCATCTATCTCAATATTGTGCTTC 59.571 38.462 14.97 0.00 0.00 3.86
3922 7168 6.429078 GCCATCTATCTCAATATTGTGCTTCA 59.571 38.462 14.97 0.00 0.00 3.02
3923 7169 7.120873 GCCATCTATCTCAATATTGTGCTTCAT 59.879 37.037 14.97 5.28 0.00 2.57
3924 7170 9.011095 CCATCTATCTCAATATTGTGCTTCATT 57.989 33.333 14.97 0.00 0.00 2.57
3926 7172 8.302965 TCTATCTCAATATTGTGCTTCATTCG 57.697 34.615 14.97 0.00 0.00 3.34
3927 7173 6.932356 ATCTCAATATTGTGCTTCATTCGT 57.068 33.333 14.97 0.00 0.00 3.85
3928 7174 6.110543 TCTCAATATTGTGCTTCATTCGTG 57.889 37.500 14.97 0.00 0.00 4.35
3929 7175 5.643348 TCTCAATATTGTGCTTCATTCGTGT 59.357 36.000 14.97 0.00 0.00 4.49
3930 7176 6.149308 TCTCAATATTGTGCTTCATTCGTGTT 59.851 34.615 14.97 0.00 0.00 3.32
3931 7177 6.314018 TCAATATTGTGCTTCATTCGTGTTC 58.686 36.000 14.97 0.00 0.00 3.18
3932 7178 6.149308 TCAATATTGTGCTTCATTCGTGTTCT 59.851 34.615 14.97 0.00 0.00 3.01
3933 7179 3.878086 TTGTGCTTCATTCGTGTTCTC 57.122 42.857 0.00 0.00 0.00 2.87
3934 7180 3.111853 TGTGCTTCATTCGTGTTCTCT 57.888 42.857 0.00 0.00 0.00 3.10
3935 7181 3.466836 TGTGCTTCATTCGTGTTCTCTT 58.533 40.909 0.00 0.00 0.00 2.85
3936 7182 3.248363 TGTGCTTCATTCGTGTTCTCTTG 59.752 43.478 0.00 0.00 0.00 3.02
3937 7183 2.224079 TGCTTCATTCGTGTTCTCTTGC 59.776 45.455 0.00 0.00 0.00 4.01
3938 7184 2.413371 GCTTCATTCGTGTTCTCTTGCC 60.413 50.000 0.00 0.00 0.00 4.52
3939 7185 2.542020 TCATTCGTGTTCTCTTGCCA 57.458 45.000 0.00 0.00 0.00 4.92
3940 7186 2.143122 TCATTCGTGTTCTCTTGCCAC 58.857 47.619 0.00 0.00 0.00 5.01
3941 7187 2.146342 CATTCGTGTTCTCTTGCCACT 58.854 47.619 0.00 0.00 0.00 4.00
3942 7188 1.865865 TTCGTGTTCTCTTGCCACTC 58.134 50.000 0.00 0.00 0.00 3.51
3943 7189 0.750249 TCGTGTTCTCTTGCCACTCA 59.250 50.000 0.00 0.00 0.00 3.41
3944 7190 1.138069 TCGTGTTCTCTTGCCACTCAA 59.862 47.619 0.00 0.00 0.00 3.02
3951 7197 2.427320 TTGCCACTCAAGAGCGCT 59.573 55.556 11.27 11.27 0.00 5.92
3952 7198 1.669115 TTGCCACTCAAGAGCGCTC 60.669 57.895 30.01 30.01 0.00 5.03
3953 7199 2.817396 GCCACTCAAGAGCGCTCC 60.817 66.667 32.94 15.76 0.00 4.70
3954 7200 2.977178 CCACTCAAGAGCGCTCCT 59.023 61.111 32.94 19.32 0.00 3.69
3955 7201 1.153667 CCACTCAAGAGCGCTCCTC 60.154 63.158 32.94 10.72 41.07 3.71
3956 7202 1.515952 CACTCAAGAGCGCTCCTCG 60.516 63.158 32.94 21.19 45.54 4.63
3976 7222 4.976996 GCTAAGCCTAGCCGCTAG 57.023 61.111 19.03 19.03 44.22 3.42
3977 7223 1.373622 GCTAAGCCTAGCCGCTAGC 60.374 63.158 20.33 15.48 44.22 3.42
3986 7232 3.929389 GCCGCTAGCTCGATCTTG 58.071 61.111 13.93 0.00 38.99 3.02
3987 7233 2.306581 GCCGCTAGCTCGATCTTGC 61.307 63.158 13.93 11.84 38.99 4.01
3988 7234 1.663074 CCGCTAGCTCGATCTTGCC 60.663 63.158 13.93 0.94 32.50 4.52
3989 7235 1.066422 CGCTAGCTCGATCTTGCCA 59.934 57.895 13.93 0.00 32.50 4.92
3990 7236 0.319383 CGCTAGCTCGATCTTGCCAT 60.319 55.000 13.93 0.00 32.50 4.40
3991 7237 1.068264 CGCTAGCTCGATCTTGCCATA 60.068 52.381 13.93 0.00 32.50 2.74
3992 7238 2.605030 GCTAGCTCGATCTTGCCATAG 58.395 52.381 7.70 0.06 0.00 2.23
3993 7239 2.029470 GCTAGCTCGATCTTGCCATAGT 60.029 50.000 7.70 0.00 0.00 2.12
3994 7240 2.522836 AGCTCGATCTTGCCATAGTG 57.477 50.000 3.65 0.00 0.00 2.74
3995 7241 1.759445 AGCTCGATCTTGCCATAGTGT 59.241 47.619 3.65 0.00 0.00 3.55
3996 7242 2.169352 AGCTCGATCTTGCCATAGTGTT 59.831 45.455 3.65 0.00 0.00 3.32
3997 7243 3.384789 AGCTCGATCTTGCCATAGTGTTA 59.615 43.478 3.65 0.00 0.00 2.41
3998 7244 3.738282 GCTCGATCTTGCCATAGTGTTAG 59.262 47.826 0.00 0.00 0.00 2.34
3999 7245 3.717707 TCGATCTTGCCATAGTGTTAGC 58.282 45.455 0.00 0.00 0.00 3.09
4000 7246 2.472861 CGATCTTGCCATAGTGTTAGCG 59.527 50.000 0.00 0.00 0.00 4.26
4001 7247 3.458189 GATCTTGCCATAGTGTTAGCGT 58.542 45.455 0.00 0.00 0.00 5.07
4002 7248 3.328382 TCTTGCCATAGTGTTAGCGTT 57.672 42.857 0.00 0.00 0.00 4.84
4003 7249 3.000041 TCTTGCCATAGTGTTAGCGTTG 59.000 45.455 0.00 0.00 0.00 4.10
4004 7250 2.465860 TGCCATAGTGTTAGCGTTGT 57.534 45.000 0.00 0.00 0.00 3.32
4005 7251 2.073056 TGCCATAGTGTTAGCGTTGTG 58.927 47.619 0.00 0.00 0.00 3.33
4006 7252 1.202031 GCCATAGTGTTAGCGTTGTGC 60.202 52.381 0.00 0.00 46.98 4.57
4015 7261 3.898509 GCGTTGTGCACTGGCCAA 61.899 61.111 19.41 0.00 45.45 4.52
4016 7262 2.332514 CGTTGTGCACTGGCCAAG 59.667 61.111 19.41 3.21 40.13 3.61
4017 7263 2.028043 GTTGTGCACTGGCCAAGC 59.972 61.111 19.41 20.05 40.13 4.01
4027 7273 4.778143 GGCCAAGCCGACCGATGT 62.778 66.667 0.00 0.00 39.62 3.06
4028 7274 2.185867 GCCAAGCCGACCGATGTA 59.814 61.111 0.00 0.00 0.00 2.29
4029 7275 1.227556 GCCAAGCCGACCGATGTAT 60.228 57.895 0.00 0.00 0.00 2.29
4030 7276 0.032952 GCCAAGCCGACCGATGTATA 59.967 55.000 0.00 0.00 0.00 1.47
4031 7277 1.337823 GCCAAGCCGACCGATGTATAT 60.338 52.381 0.00 0.00 0.00 0.86
4032 7278 2.337583 CCAAGCCGACCGATGTATATG 58.662 52.381 0.00 0.00 0.00 1.78
4033 7279 1.726791 CAAGCCGACCGATGTATATGC 59.273 52.381 0.00 0.00 0.00 3.14
4034 7280 1.257743 AGCCGACCGATGTATATGCT 58.742 50.000 0.00 0.00 0.00 3.79
4035 7281 1.618837 AGCCGACCGATGTATATGCTT 59.381 47.619 0.00 0.00 0.00 3.91
4036 7282 1.993370 GCCGACCGATGTATATGCTTC 59.007 52.381 0.00 0.00 0.00 3.86
4037 7283 2.352814 GCCGACCGATGTATATGCTTCT 60.353 50.000 5.40 0.00 0.00 2.85
4038 7284 3.861131 GCCGACCGATGTATATGCTTCTT 60.861 47.826 5.40 0.00 0.00 2.52
4039 7285 3.921021 CCGACCGATGTATATGCTTCTTC 59.079 47.826 5.40 1.84 0.00 2.87
4040 7286 3.921021 CGACCGATGTATATGCTTCTTCC 59.079 47.826 5.40 0.00 0.00 3.46
4041 7287 4.321304 CGACCGATGTATATGCTTCTTCCT 60.321 45.833 5.40 0.00 0.00 3.36
4042 7288 5.106277 CGACCGATGTATATGCTTCTTCCTA 60.106 44.000 5.40 0.00 0.00 2.94
4043 7289 6.569801 CGACCGATGTATATGCTTCTTCCTAA 60.570 42.308 5.40 0.00 0.00 2.69
4044 7290 7.062749 ACCGATGTATATGCTTCTTCCTAAA 57.937 36.000 5.40 0.00 0.00 1.85
4045 7291 7.680730 ACCGATGTATATGCTTCTTCCTAAAT 58.319 34.615 5.40 0.00 0.00 1.40
4046 7292 8.812972 ACCGATGTATATGCTTCTTCCTAAATA 58.187 33.333 5.40 0.00 0.00 1.40
4047 7293 9.653287 CCGATGTATATGCTTCTTCCTAAATAA 57.347 33.333 5.40 0.00 0.00 1.40
4113 7359 8.920509 TTCGAGTGTCTTTTATCAAATATCGA 57.079 30.769 0.00 0.00 33.05 3.59
4114 7360 8.336498 TCGAGTGTCTTTTATCAAATATCGAC 57.664 34.615 0.00 0.00 30.26 4.20
4115 7361 8.188799 TCGAGTGTCTTTTATCAAATATCGACT 58.811 33.333 0.00 0.00 30.26 4.18
4116 7362 8.808529 CGAGTGTCTTTTATCAAATATCGACTT 58.191 33.333 0.00 0.00 0.00 3.01
4117 7363 9.907576 GAGTGTCTTTTATCAAATATCGACTTG 57.092 33.333 0.00 0.00 0.00 3.16
4118 7364 9.653287 AGTGTCTTTTATCAAATATCGACTTGA 57.347 29.630 8.40 8.40 36.08 3.02
4127 7373 7.905604 TCAAATATCGACTTGAAGTTGATGT 57.094 32.000 29.50 23.18 46.16 3.06
4128 7374 8.322906 TCAAATATCGACTTGAAGTTGATGTT 57.677 30.769 29.50 26.51 46.11 2.71
4129 7375 9.430623 TCAAATATCGACTTGAAGTTGATGTTA 57.569 29.630 29.50 16.71 44.53 2.41
4133 7379 7.730364 ATCGACTTGAAGTTGATGTTAAAGT 57.270 32.000 23.59 1.78 45.26 2.66
4134 7380 7.173863 TCGACTTGAAGTTGATGTTAAAGTC 57.826 36.000 11.14 0.00 40.18 3.01
4135 7381 6.759356 TCGACTTGAAGTTGATGTTAAAGTCA 59.241 34.615 11.14 0.16 42.31 3.41
4136 7382 7.441157 TCGACTTGAAGTTGATGTTAAAGTCAT 59.559 33.333 11.14 0.00 42.31 3.06
4137 7383 8.070171 CGACTTGAAGTTGATGTTAAAGTCATT 58.930 33.333 6.74 0.00 42.31 2.57
4138 7384 9.736023 GACTTGAAGTTGATGTTAAAGTCATTT 57.264 29.630 0.00 0.00 41.99 2.32
4178 7424 9.710900 AAATTCAACTCAAATAATTTCTCCACC 57.289 29.630 0.00 0.00 28.00 4.61
4179 7425 7.831691 TTCAACTCAAATAATTTCTCCACCA 57.168 32.000 0.00 0.00 0.00 4.17
4180 7426 8.421249 TTCAACTCAAATAATTTCTCCACCAT 57.579 30.769 0.00 0.00 0.00 3.55
4181 7427 7.829725 TCAACTCAAATAATTTCTCCACCATG 58.170 34.615 0.00 0.00 0.00 3.66
4182 7428 7.451255 TCAACTCAAATAATTTCTCCACCATGT 59.549 33.333 0.00 0.00 0.00 3.21
4183 7429 8.739039 CAACTCAAATAATTTCTCCACCATGTA 58.261 33.333 0.00 0.00 0.00 2.29
4184 7430 8.877864 ACTCAAATAATTTCTCCACCATGTAA 57.122 30.769 0.00 0.00 0.00 2.41
4185 7431 9.308000 ACTCAAATAATTTCTCCACCATGTAAA 57.692 29.630 0.00 0.00 0.00 2.01
4186 7432 9.573133 CTCAAATAATTTCTCCACCATGTAAAC 57.427 33.333 0.00 0.00 0.00 2.01
4187 7433 9.308000 TCAAATAATTTCTCCACCATGTAAACT 57.692 29.630 0.00 0.00 0.00 2.66
4188 7434 9.573133 CAAATAATTTCTCCACCATGTAAACTC 57.427 33.333 0.00 0.00 0.00 3.01
4189 7435 9.533831 AAATAATTTCTCCACCATGTAAACTCT 57.466 29.630 0.00 0.00 0.00 3.24
4190 7436 6.824305 AATTTCTCCACCATGTAAACTCTG 57.176 37.500 0.00 0.00 0.00 3.35
4191 7437 5.560722 TTTCTCCACCATGTAAACTCTGA 57.439 39.130 0.00 0.00 0.00 3.27
4192 7438 5.560722 TTCTCCACCATGTAAACTCTGAA 57.439 39.130 0.00 0.00 0.00 3.02
4193 7439 5.560722 TCTCCACCATGTAAACTCTGAAA 57.439 39.130 0.00 0.00 0.00 2.69
4194 7440 5.305585 TCTCCACCATGTAAACTCTGAAAC 58.694 41.667 0.00 0.00 0.00 2.78
4195 7441 4.062293 TCCACCATGTAAACTCTGAAACG 58.938 43.478 0.00 0.00 0.00 3.60
4196 7442 4.062293 CCACCATGTAAACTCTGAAACGA 58.938 43.478 0.00 0.00 0.00 3.85
4197 7443 4.513692 CCACCATGTAAACTCTGAAACGAA 59.486 41.667 0.00 0.00 0.00 3.85
4198 7444 5.181245 CCACCATGTAAACTCTGAAACGAAT 59.819 40.000 0.00 0.00 0.00 3.34
4199 7445 6.079763 CACCATGTAAACTCTGAAACGAATG 58.920 40.000 0.00 0.00 0.00 2.67
4200 7446 5.763204 ACCATGTAAACTCTGAAACGAATGT 59.237 36.000 0.00 0.00 0.00 2.71
4201 7447 6.262273 ACCATGTAAACTCTGAAACGAATGTT 59.738 34.615 0.00 0.00 40.98 2.71
4202 7448 6.797033 CCATGTAAACTCTGAAACGAATGTTC 59.203 38.462 0.00 0.00 37.31 3.18
4203 7449 7.307989 CCATGTAAACTCTGAAACGAATGTTCT 60.308 37.037 0.00 0.00 37.31 3.01
4204 7450 8.708742 CATGTAAACTCTGAAACGAATGTTCTA 58.291 33.333 0.00 0.00 37.31 2.10
4205 7451 8.651391 TGTAAACTCTGAAACGAATGTTCTAA 57.349 30.769 0.00 0.00 37.31 2.10
4206 7452 9.100554 TGTAAACTCTGAAACGAATGTTCTAAA 57.899 29.630 0.00 0.00 37.31 1.85
4210 7456 9.665264 AACTCTGAAACGAATGTTCTAAATTTC 57.335 29.630 0.00 0.00 37.31 2.17
4211 7457 8.290325 ACTCTGAAACGAATGTTCTAAATTTCC 58.710 33.333 0.00 0.00 37.31 3.13
4212 7458 8.160521 TCTGAAACGAATGTTCTAAATTTCCA 57.839 30.769 0.00 0.00 37.31 3.53
4213 7459 8.073768 TCTGAAACGAATGTTCTAAATTTCCAC 58.926 33.333 0.00 0.00 37.31 4.02
4214 7460 7.936584 TGAAACGAATGTTCTAAATTTCCACT 58.063 30.769 0.00 0.00 37.31 4.00
4215 7461 8.410141 TGAAACGAATGTTCTAAATTTCCACTT 58.590 29.630 0.00 0.00 37.31 3.16
4216 7462 9.244799 GAAACGAATGTTCTAAATTTCCACTTT 57.755 29.630 0.00 0.00 37.31 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.193826 TCTTCCTTCCTTCATTCAGACG 57.806 45.455 0.00 0.00 0.00 4.18
23 24 2.075338 CAGTCAGGCTGCTCTTTCTTC 58.925 52.381 10.34 0.00 38.52 2.87
24 25 2.181954 CAGTCAGGCTGCTCTTTCTT 57.818 50.000 10.34 0.00 38.52 2.52
25 26 3.931768 CAGTCAGGCTGCTCTTTCT 57.068 52.632 10.34 0.00 38.52 2.52
45 46 6.541278 ACCTACACACTTAAAAGTCTCCAAAC 59.459 38.462 0.00 0.00 37.08 2.93
46 47 6.540914 CACCTACACACTTAAAAGTCTCCAAA 59.459 38.462 0.00 0.00 37.08 3.28
49 50 4.451435 GCACCTACACACTTAAAAGTCTCC 59.549 45.833 0.00 0.00 37.08 3.71
52 53 5.054477 TGAGCACCTACACACTTAAAAGTC 58.946 41.667 0.00 0.00 37.08 3.01
59 60 3.275617 TTGTTGAGCACCTACACACTT 57.724 42.857 0.00 0.00 30.54 3.16
134 145 1.734465 GTCTGTATGCACCTTGCTGAC 59.266 52.381 0.00 0.00 45.31 3.51
188 217 1.971481 ATGTGTGCTGAAGAGTGCAA 58.029 45.000 0.00 0.00 41.10 4.08
234 265 0.389391 GGAGGATGCGATCGGAAAGA 59.611 55.000 14.89 0.00 0.00 2.52
240 271 1.869774 TGATTTGGAGGATGCGATCG 58.130 50.000 11.69 11.69 0.00 3.69
241 272 2.551459 CCTTGATTTGGAGGATGCGATC 59.449 50.000 0.00 0.00 34.91 3.69
288 319 6.668323 AGTATTTTCGTGTCCATTCAGTTTG 58.332 36.000 0.00 0.00 0.00 2.93
301 332 7.381079 CACAATCGTGTACTAGTATTTTCGTG 58.619 38.462 5.75 4.97 38.41 4.35
384 419 4.512198 GGATGATGAGCTGATTCTGTCAAG 59.488 45.833 0.00 0.00 36.14 3.02
449 488 1.046204 AAACGGAGAGAAGTCGGGTT 58.954 50.000 0.00 0.00 0.00 4.11
561 604 8.551205 CGGATTGTTTATCTAGTGTAGTACGTA 58.449 37.037 0.00 0.00 33.53 3.57
562 605 7.280876 TCGGATTGTTTATCTAGTGTAGTACGT 59.719 37.037 0.00 0.00 33.53 3.57
563 606 7.585573 GTCGGATTGTTTATCTAGTGTAGTACG 59.414 40.741 0.00 0.00 33.53 3.67
564 607 8.400947 TGTCGGATTGTTTATCTAGTGTAGTAC 58.599 37.037 0.00 0.00 33.53 2.73
565 608 8.510243 TGTCGGATTGTTTATCTAGTGTAGTA 57.490 34.615 0.00 0.00 33.53 1.82
566 609 7.400599 TGTCGGATTGTTTATCTAGTGTAGT 57.599 36.000 0.00 0.00 33.53 2.73
567 610 7.382488 CCATGTCGGATTGTTTATCTAGTGTAG 59.618 40.741 0.00 0.00 36.56 2.74
568 611 7.207383 CCATGTCGGATTGTTTATCTAGTGTA 58.793 38.462 0.00 0.00 36.56 2.90
569 612 6.049149 CCATGTCGGATTGTTTATCTAGTGT 58.951 40.000 0.00 0.00 36.56 3.55
570 613 5.050091 GCCATGTCGGATTGTTTATCTAGTG 60.050 44.000 0.00 0.00 36.56 2.74
727 773 2.222596 CGCATACGAGTTTGTTCTCAGC 60.223 50.000 0.00 0.00 43.93 4.26
973 1115 2.155194 CGAGCTGTGTGTCTAGCGC 61.155 63.158 0.00 0.00 44.43 5.92
1089 1250 4.699522 AGAACGAACAGGGCGGGC 62.700 66.667 0.00 0.00 0.00 6.13
1090 1251 2.742372 CAGAACGAACAGGGCGGG 60.742 66.667 0.00 0.00 0.00 6.13
1093 1256 0.955919 CCTTCCAGAACGAACAGGGC 60.956 60.000 0.00 0.00 0.00 5.19
1227 1418 9.725019 AAAGAACATTTGGTCTCTTTTCTTTTT 57.275 25.926 0.00 0.00 42.17 1.94
1237 1428 5.907391 CACGTGTTAAAGAACATTTGGTCTC 59.093 40.000 7.58 0.00 46.98 3.36
1281 1491 0.120377 TAGGAAAGGAAGGGGCCTGA 59.880 55.000 0.84 0.00 38.58 3.86
1309 1519 0.599991 GACTGTGACGTGGATGTGCA 60.600 55.000 0.00 0.00 0.00 4.57
1430 1653 3.826157 CCTTTTGGCCATGACTCTGTAAA 59.174 43.478 6.09 0.00 0.00 2.01
1447 1670 3.118371 ACTGTCGTCCTCTTGAACCTTTT 60.118 43.478 0.00 0.00 0.00 2.27
1566 1789 7.209475 CACATTTTCTGTAACTGGGAAAACAT 58.791 34.615 0.00 0.00 40.27 2.71
1573 1796 5.982890 AATCCACATTTTCTGTAACTGGG 57.017 39.130 0.00 0.00 35.91 4.45
1582 1870 7.413446 TCCTCTCCATTTAATCCACATTTTCT 58.587 34.615 0.00 0.00 0.00 2.52
1663 1959 3.645975 CCGTTGAACGCCGTGCTT 61.646 61.111 12.95 0.00 40.91 3.91
1715 2011 2.351276 GTTGGTGCCGTGGAGGAT 59.649 61.111 0.00 0.00 45.00 3.24
2164 2461 2.942752 GCTGATGTTCTGCTGGATCCAA 60.943 50.000 17.00 0.10 38.17 3.53
3235 4287 2.182842 GCCCTTTGCGAGCGATCAT 61.183 57.895 0.00 0.00 0.00 2.45
3337 4470 5.345741 CACTACGGCCATGAAAAGAAAAATG 59.654 40.000 2.24 0.00 0.00 2.32
3339 4472 4.339814 ACACTACGGCCATGAAAAGAAAAA 59.660 37.500 2.24 0.00 0.00 1.94
3473 4631 7.243487 CGCATGTTAAATGTAAATGTCTGTCT 58.757 34.615 0.00 0.00 0.00 3.41
3480 4638 6.188871 TCTACGCGCATGTTAAATGTAAATG 58.811 36.000 5.73 0.00 0.00 2.32
3699 6942 9.620660 ATGATTACGTATTTGAAAACTCCAAAC 57.379 29.630 0.00 0.00 36.48 2.93
3775 7021 1.170442 AAAACGGCCACTTATTCGGG 58.830 50.000 2.24 0.00 0.00 5.14
3776 7022 4.625972 ATAAAAACGGCCACTTATTCGG 57.374 40.909 2.24 0.00 0.00 4.30
3783 7029 7.888424 AGTAAATAACAATAAAAACGGCCACT 58.112 30.769 2.24 0.00 0.00 4.00
3807 7053 0.650512 CGCACGGGTATGTTTGCTAG 59.349 55.000 0.00 0.00 32.56 3.42
3808 7054 0.037139 ACGCACGGGTATGTTTGCTA 60.037 50.000 0.00 0.00 32.56 3.49
3809 7055 0.887387 AACGCACGGGTATGTTTGCT 60.887 50.000 0.00 0.00 32.56 3.91
3810 7056 0.727793 CAACGCACGGGTATGTTTGC 60.728 55.000 0.00 0.00 0.00 3.68
3811 7057 0.727793 GCAACGCACGGGTATGTTTG 60.728 55.000 0.00 0.00 0.00 2.93
3812 7058 1.167155 TGCAACGCACGGGTATGTTT 61.167 50.000 0.00 0.00 31.71 2.83
3813 7059 1.167155 TTGCAACGCACGGGTATGTT 61.167 50.000 0.00 0.00 38.71 2.71
3814 7060 1.598407 TTGCAACGCACGGGTATGT 60.598 52.632 0.00 0.00 38.71 2.29
3815 7061 1.154301 GTTGCAACGCACGGGTATG 60.154 57.895 14.90 0.00 38.71 2.39
3816 7062 2.673114 CGTTGCAACGCACGGGTAT 61.673 57.895 35.89 0.00 46.06 2.73
3817 7063 3.339464 CGTTGCAACGCACGGGTA 61.339 61.111 35.89 0.00 46.06 3.69
3841 7087 6.239289 CGGGGTTAATGCCATCTGATATTTTT 60.239 38.462 0.00 0.00 0.00 1.94
3842 7088 5.243730 CGGGGTTAATGCCATCTGATATTTT 59.756 40.000 0.00 0.00 0.00 1.82
3843 7089 4.766891 CGGGGTTAATGCCATCTGATATTT 59.233 41.667 0.00 0.00 0.00 1.40
3844 7090 4.202567 ACGGGGTTAATGCCATCTGATATT 60.203 41.667 0.00 0.00 0.00 1.28
3845 7091 3.330701 ACGGGGTTAATGCCATCTGATAT 59.669 43.478 0.00 0.00 0.00 1.63
3846 7092 2.708861 ACGGGGTTAATGCCATCTGATA 59.291 45.455 0.00 0.00 0.00 2.15
3847 7093 1.494721 ACGGGGTTAATGCCATCTGAT 59.505 47.619 0.00 0.00 0.00 2.90
3848 7094 0.916086 ACGGGGTTAATGCCATCTGA 59.084 50.000 0.00 0.00 0.00 3.27
3849 7095 2.631160 TACGGGGTTAATGCCATCTG 57.369 50.000 0.00 0.00 0.00 2.90
3850 7096 2.158667 CCTTACGGGGTTAATGCCATCT 60.159 50.000 0.00 0.00 0.00 2.90
3851 7097 2.227194 CCTTACGGGGTTAATGCCATC 58.773 52.381 0.00 0.00 0.00 3.51
3852 7098 1.752788 GCCTTACGGGGTTAATGCCAT 60.753 52.381 0.00 0.00 35.12 4.40
3853 7099 0.394625 GCCTTACGGGGTTAATGCCA 60.395 55.000 0.00 0.00 35.12 4.92
3854 7100 0.106868 AGCCTTACGGGGTTAATGCC 60.107 55.000 0.00 0.00 44.41 4.40
3855 7101 1.021968 CAGCCTTACGGGGTTAATGC 58.978 55.000 0.00 0.00 44.41 3.56
3856 7102 2.093128 AGTCAGCCTTACGGGGTTAATG 60.093 50.000 0.00 0.00 44.41 1.90
3857 7103 2.169978 GAGTCAGCCTTACGGGGTTAAT 59.830 50.000 0.00 0.00 44.41 1.40
3858 7104 1.551883 GAGTCAGCCTTACGGGGTTAA 59.448 52.381 0.00 0.00 44.41 2.01
3859 7105 1.188863 GAGTCAGCCTTACGGGGTTA 58.811 55.000 0.00 0.00 44.41 2.85
3860 7106 0.834687 TGAGTCAGCCTTACGGGGTT 60.835 55.000 0.00 0.00 44.41 4.11
3862 7108 0.108138 CTTGAGTCAGCCTTACGGGG 60.108 60.000 0.00 0.00 35.12 5.73
3863 7109 0.895530 TCTTGAGTCAGCCTTACGGG 59.104 55.000 0.00 0.00 38.36 5.28
3864 7110 1.404315 GGTCTTGAGTCAGCCTTACGG 60.404 57.143 0.00 0.00 0.00 4.02
3865 7111 1.404315 GGGTCTTGAGTCAGCCTTACG 60.404 57.143 9.38 0.00 0.00 3.18
3866 7112 1.903183 AGGGTCTTGAGTCAGCCTTAC 59.097 52.381 9.38 0.00 37.19 2.34
3867 7113 2.327325 AGGGTCTTGAGTCAGCCTTA 57.673 50.000 9.38 0.00 37.19 2.69
3868 7114 2.327325 TAGGGTCTTGAGTCAGCCTT 57.673 50.000 5.14 3.36 40.98 4.35
3869 7115 2.559381 ATAGGGTCTTGAGTCAGCCT 57.441 50.000 5.18 5.18 43.16 4.58
3870 7116 4.443621 GTTTATAGGGTCTTGAGTCAGCC 58.556 47.826 0.00 0.00 0.00 4.85
3871 7117 4.443621 GGTTTATAGGGTCTTGAGTCAGC 58.556 47.826 0.00 0.00 0.00 4.26
3872 7118 4.469945 TGGGTTTATAGGGTCTTGAGTCAG 59.530 45.833 0.00 0.00 0.00 3.51
3873 7119 4.431378 TGGGTTTATAGGGTCTTGAGTCA 58.569 43.478 0.00 0.00 0.00 3.41
3874 7120 5.368989 CATGGGTTTATAGGGTCTTGAGTC 58.631 45.833 0.00 0.00 0.00 3.36
3875 7121 4.385310 GCATGGGTTTATAGGGTCTTGAGT 60.385 45.833 0.00 0.00 0.00 3.41
3876 7122 4.137543 GCATGGGTTTATAGGGTCTTGAG 58.862 47.826 0.00 0.00 0.00 3.02
3877 7123 3.117663 GGCATGGGTTTATAGGGTCTTGA 60.118 47.826 0.00 0.00 0.00 3.02
3878 7124 3.222603 GGCATGGGTTTATAGGGTCTTG 58.777 50.000 0.00 0.00 0.00 3.02
3879 7125 2.856231 TGGCATGGGTTTATAGGGTCTT 59.144 45.455 0.00 0.00 0.00 3.01
3880 7126 2.498441 TGGCATGGGTTTATAGGGTCT 58.502 47.619 0.00 0.00 0.00 3.85
3881 7127 3.074538 AGATGGCATGGGTTTATAGGGTC 59.925 47.826 3.81 0.00 0.00 4.46
3882 7128 3.063650 AGATGGCATGGGTTTATAGGGT 58.936 45.455 3.81 0.00 0.00 4.34
3883 7129 3.814504 AGATGGCATGGGTTTATAGGG 57.185 47.619 3.81 0.00 0.00 3.53
3884 7130 6.070021 TGAGATAGATGGCATGGGTTTATAGG 60.070 42.308 3.81 0.00 0.00 2.57
3885 7131 6.950842 TGAGATAGATGGCATGGGTTTATAG 58.049 40.000 3.81 0.00 0.00 1.31
3886 7132 6.950860 TGAGATAGATGGCATGGGTTTATA 57.049 37.500 3.81 0.00 0.00 0.98
3887 7133 5.848286 TGAGATAGATGGCATGGGTTTAT 57.152 39.130 3.81 0.00 0.00 1.40
3888 7134 5.645056 TTGAGATAGATGGCATGGGTTTA 57.355 39.130 3.81 0.00 0.00 2.01
3889 7135 4.524802 TTGAGATAGATGGCATGGGTTT 57.475 40.909 3.81 0.00 0.00 3.27
3890 7136 4.736611 ATTGAGATAGATGGCATGGGTT 57.263 40.909 3.81 0.00 0.00 4.11
3891 7137 6.185511 CAATATTGAGATAGATGGCATGGGT 58.814 40.000 10.04 0.00 0.00 4.51
3892 7138 6.095021 CACAATATTGAGATAGATGGCATGGG 59.905 42.308 22.16 0.00 0.00 4.00
3893 7139 6.404403 GCACAATATTGAGATAGATGGCATGG 60.404 42.308 22.16 0.00 0.00 3.66
3894 7140 6.374613 AGCACAATATTGAGATAGATGGCATG 59.625 38.462 22.16 6.04 0.00 4.06
3895 7141 6.482524 AGCACAATATTGAGATAGATGGCAT 58.517 36.000 22.16 0.00 0.00 4.40
3896 7142 5.872963 AGCACAATATTGAGATAGATGGCA 58.127 37.500 22.16 0.00 0.00 4.92
3897 7143 6.429078 TGAAGCACAATATTGAGATAGATGGC 59.571 38.462 22.16 10.01 0.00 4.40
3898 7144 7.974482 TGAAGCACAATATTGAGATAGATGG 57.026 36.000 22.16 1.60 0.00 3.51
3900 7146 8.933807 CGAATGAAGCACAATATTGAGATAGAT 58.066 33.333 22.16 5.84 0.00 1.98
3901 7147 7.928167 ACGAATGAAGCACAATATTGAGATAGA 59.072 33.333 22.16 3.75 0.00 1.98
3902 7148 8.008279 CACGAATGAAGCACAATATTGAGATAG 58.992 37.037 22.16 7.22 0.00 2.08
3903 7149 7.495606 ACACGAATGAAGCACAATATTGAGATA 59.504 33.333 22.16 0.00 0.00 1.98
3904 7150 6.317140 ACACGAATGAAGCACAATATTGAGAT 59.683 34.615 22.16 10.21 0.00 2.75
3905 7151 5.643348 ACACGAATGAAGCACAATATTGAGA 59.357 36.000 22.16 0.00 0.00 3.27
3906 7152 5.872635 ACACGAATGAAGCACAATATTGAG 58.127 37.500 22.16 15.05 0.00 3.02
3907 7153 5.878332 ACACGAATGAAGCACAATATTGA 57.122 34.783 22.16 0.00 0.00 2.57
3908 7154 6.317088 AGAACACGAATGAAGCACAATATTG 58.683 36.000 14.01 14.01 0.00 1.90
3909 7155 6.372659 AGAGAACACGAATGAAGCACAATATT 59.627 34.615 0.00 0.00 0.00 1.28
3910 7156 5.877012 AGAGAACACGAATGAAGCACAATAT 59.123 36.000 0.00 0.00 0.00 1.28
3911 7157 5.237815 AGAGAACACGAATGAAGCACAATA 58.762 37.500 0.00 0.00 0.00 1.90
3912 7158 4.067896 AGAGAACACGAATGAAGCACAAT 58.932 39.130 0.00 0.00 0.00 2.71
3913 7159 3.466836 AGAGAACACGAATGAAGCACAA 58.533 40.909 0.00 0.00 0.00 3.33
3914 7160 3.111853 AGAGAACACGAATGAAGCACA 57.888 42.857 0.00 0.00 0.00 4.57
3915 7161 3.803555 CAAGAGAACACGAATGAAGCAC 58.196 45.455 0.00 0.00 0.00 4.40
3916 7162 2.224079 GCAAGAGAACACGAATGAAGCA 59.776 45.455 0.00 0.00 0.00 3.91
3917 7163 2.413371 GGCAAGAGAACACGAATGAAGC 60.413 50.000 0.00 0.00 0.00 3.86
3918 7164 2.807967 TGGCAAGAGAACACGAATGAAG 59.192 45.455 0.00 0.00 0.00 3.02
3919 7165 2.548057 GTGGCAAGAGAACACGAATGAA 59.452 45.455 0.00 0.00 0.00 2.57
3920 7166 2.143122 GTGGCAAGAGAACACGAATGA 58.857 47.619 0.00 0.00 0.00 2.57
3921 7167 2.146342 AGTGGCAAGAGAACACGAATG 58.854 47.619 0.00 0.00 39.95 2.67
3922 7168 2.224281 TGAGTGGCAAGAGAACACGAAT 60.224 45.455 0.00 0.00 39.95 3.34
3923 7169 1.138069 TGAGTGGCAAGAGAACACGAA 59.862 47.619 0.00 0.00 39.95 3.85
3924 7170 0.750249 TGAGTGGCAAGAGAACACGA 59.250 50.000 0.00 0.00 39.95 4.35
3925 7171 1.581934 TTGAGTGGCAAGAGAACACG 58.418 50.000 0.00 0.00 39.95 4.49
3934 7180 1.669115 GAGCGCTCTTGAGTGGCAA 60.669 57.895 29.88 0.00 34.73 4.52
3935 7181 2.047844 GAGCGCTCTTGAGTGGCA 60.048 61.111 29.88 0.00 0.00 4.92
3936 7182 2.817396 GGAGCGCTCTTGAGTGGC 60.817 66.667 34.46 13.48 0.00 5.01
3937 7183 1.153667 GAGGAGCGCTCTTGAGTGG 60.154 63.158 34.46 0.92 0.00 4.00
3938 7184 1.515952 CGAGGAGCGCTCTTGAGTG 60.516 63.158 34.46 15.98 0.00 3.51
3939 7185 2.881389 CGAGGAGCGCTCTTGAGT 59.119 61.111 34.46 15.66 0.00 3.41
3960 7206 4.976996 GCTAGCGGCTAGGCTTAG 57.023 61.111 31.86 13.96 41.39 2.18
3969 7215 2.306581 GCAAGATCGAGCTAGCGGC 61.307 63.158 2.34 1.96 42.19 6.53
3970 7216 1.663074 GGCAAGATCGAGCTAGCGG 60.663 63.158 2.34 5.74 0.00 5.52
3971 7217 0.319383 ATGGCAAGATCGAGCTAGCG 60.319 55.000 2.34 0.00 0.00 4.26
3972 7218 2.029470 ACTATGGCAAGATCGAGCTAGC 60.029 50.000 2.34 6.62 0.00 3.42
3973 7219 3.005261 ACACTATGGCAAGATCGAGCTAG 59.995 47.826 2.34 0.00 0.00 3.42
3974 7220 2.959030 ACACTATGGCAAGATCGAGCTA 59.041 45.455 2.34 6.66 0.00 3.32
3975 7221 1.759445 ACACTATGGCAAGATCGAGCT 59.241 47.619 0.00 0.00 0.00 4.09
3976 7222 2.231215 ACACTATGGCAAGATCGAGC 57.769 50.000 0.00 0.00 0.00 5.03
3977 7223 3.738282 GCTAACACTATGGCAAGATCGAG 59.262 47.826 0.00 0.00 0.00 4.04
3978 7224 3.717707 GCTAACACTATGGCAAGATCGA 58.282 45.455 0.00 0.00 0.00 3.59
3979 7225 2.472861 CGCTAACACTATGGCAAGATCG 59.527 50.000 0.00 0.00 0.00 3.69
3980 7226 3.458189 ACGCTAACACTATGGCAAGATC 58.542 45.455 0.00 0.00 0.00 2.75
3981 7227 3.543680 ACGCTAACACTATGGCAAGAT 57.456 42.857 0.00 0.00 0.00 2.40
3982 7228 3.000041 CAACGCTAACACTATGGCAAGA 59.000 45.455 0.00 0.00 0.00 3.02
3983 7229 2.742053 ACAACGCTAACACTATGGCAAG 59.258 45.455 0.00 0.00 0.00 4.01
3984 7230 2.482336 CACAACGCTAACACTATGGCAA 59.518 45.455 0.00 0.00 0.00 4.52
3985 7231 2.073056 CACAACGCTAACACTATGGCA 58.927 47.619 0.00 0.00 0.00 4.92
3986 7232 1.202031 GCACAACGCTAACACTATGGC 60.202 52.381 0.00 0.00 37.77 4.40
3987 7233 2.073056 TGCACAACGCTAACACTATGG 58.927 47.619 0.00 0.00 43.06 2.74
3988 7234 2.736721 AGTGCACAACGCTAACACTATG 59.263 45.455 21.04 0.00 39.69 2.23
3989 7235 2.736721 CAGTGCACAACGCTAACACTAT 59.263 45.455 21.04 0.00 39.48 2.12
3990 7236 2.131972 CAGTGCACAACGCTAACACTA 58.868 47.619 21.04 0.00 39.48 2.74
3991 7237 0.937304 CAGTGCACAACGCTAACACT 59.063 50.000 21.04 0.00 42.09 3.55
3992 7238 0.041312 CCAGTGCACAACGCTAACAC 60.041 55.000 21.04 0.00 43.06 3.32
3993 7239 1.781025 GCCAGTGCACAACGCTAACA 61.781 55.000 21.04 0.00 43.06 2.41
3994 7240 1.082104 GCCAGTGCACAACGCTAAC 60.082 57.895 21.04 0.00 43.06 2.34
3995 7241 2.258013 GGCCAGTGCACAACGCTAA 61.258 57.895 21.04 0.00 43.06 3.09
3996 7242 2.668212 GGCCAGTGCACAACGCTA 60.668 61.111 21.04 0.00 43.06 4.26
3997 7243 4.873810 TGGCCAGTGCACAACGCT 62.874 61.111 21.04 0.00 43.06 5.07
3998 7244 3.829272 CTTGGCCAGTGCACAACGC 62.829 63.158 21.04 16.26 40.13 4.84
3999 7245 2.332514 CTTGGCCAGTGCACAACG 59.667 61.111 21.04 6.79 40.13 4.10
4000 7246 2.028043 GCTTGGCCAGTGCACAAC 59.972 61.111 21.04 7.44 40.13 3.32
4010 7256 2.660258 ATACATCGGTCGGCTTGGCC 62.660 60.000 0.00 0.00 46.75 5.36
4011 7257 0.032952 TATACATCGGTCGGCTTGGC 59.967 55.000 0.00 0.00 0.00 4.52
4012 7258 2.337583 CATATACATCGGTCGGCTTGG 58.662 52.381 0.00 0.00 0.00 3.61
4013 7259 1.726791 GCATATACATCGGTCGGCTTG 59.273 52.381 0.00 0.00 0.00 4.01
4014 7260 1.618837 AGCATATACATCGGTCGGCTT 59.381 47.619 0.00 0.00 0.00 4.35
4015 7261 1.257743 AGCATATACATCGGTCGGCT 58.742 50.000 0.00 0.00 0.00 5.52
4016 7262 1.993370 GAAGCATATACATCGGTCGGC 59.007 52.381 0.00 0.00 0.00 5.54
4017 7263 3.577649 AGAAGCATATACATCGGTCGG 57.422 47.619 0.00 0.00 0.00 4.79
4018 7264 3.921021 GGAAGAAGCATATACATCGGTCG 59.079 47.826 0.00 0.00 0.00 4.79
4019 7265 5.140747 AGGAAGAAGCATATACATCGGTC 57.859 43.478 0.00 0.00 0.00 4.79
4020 7266 6.665992 TTAGGAAGAAGCATATACATCGGT 57.334 37.500 0.00 0.00 0.00 4.69
4021 7267 9.653287 TTATTTAGGAAGAAGCATATACATCGG 57.347 33.333 0.00 0.00 0.00 4.18
4087 7333 9.361315 TCGATATTTGATAAAAGACACTCGAAA 57.639 29.630 0.00 0.00 0.00 3.46
4088 7334 8.804743 GTCGATATTTGATAAAAGACACTCGAA 58.195 33.333 0.00 0.00 32.83 3.71
4089 7335 8.188799 AGTCGATATTTGATAAAAGACACTCGA 58.811 33.333 0.00 0.00 0.00 4.04
4090 7336 8.341477 AGTCGATATTTGATAAAAGACACTCG 57.659 34.615 0.00 0.00 0.00 4.18
4091 7337 9.907576 CAAGTCGATATTTGATAAAAGACACTC 57.092 33.333 0.00 0.00 0.00 3.51
4092 7338 9.653287 TCAAGTCGATATTTGATAAAAGACACT 57.347 29.630 6.04 0.00 0.00 3.55
4101 7347 9.599866 ACATCAACTTCAAGTCGATATTTGATA 57.400 29.630 9.73 3.18 32.12 2.15
4102 7348 8.498054 ACATCAACTTCAAGTCGATATTTGAT 57.502 30.769 9.73 0.00 32.12 2.57
4103 7349 7.905604 ACATCAACTTCAAGTCGATATTTGA 57.094 32.000 0.00 6.04 30.24 2.69
4107 7353 9.436957 ACTTTAACATCAACTTCAAGTCGATAT 57.563 29.630 0.00 0.00 0.00 1.63
4108 7354 8.827177 ACTTTAACATCAACTTCAAGTCGATA 57.173 30.769 0.00 0.00 0.00 2.92
4109 7355 7.441157 TGACTTTAACATCAACTTCAAGTCGAT 59.559 33.333 0.00 0.00 40.94 3.59
4110 7356 6.759356 TGACTTTAACATCAACTTCAAGTCGA 59.241 34.615 0.00 0.00 40.94 4.20
4111 7357 6.943981 TGACTTTAACATCAACTTCAAGTCG 58.056 36.000 0.00 0.00 40.94 4.18
4112 7358 9.736023 AAATGACTTTAACATCAACTTCAAGTC 57.264 29.630 0.00 0.00 39.31 3.01
4152 7398 9.710900 GGTGGAGAAATTATTTGAGTTGAATTT 57.289 29.630 0.00 0.00 34.91 1.82
4153 7399 8.869109 TGGTGGAGAAATTATTTGAGTTGAATT 58.131 29.630 0.00 0.00 0.00 2.17
4154 7400 8.421249 TGGTGGAGAAATTATTTGAGTTGAAT 57.579 30.769 0.00 0.00 0.00 2.57
4155 7401 7.831691 TGGTGGAGAAATTATTTGAGTTGAA 57.168 32.000 0.00 0.00 0.00 2.69
4156 7402 7.451255 ACATGGTGGAGAAATTATTTGAGTTGA 59.549 33.333 0.00 0.00 0.00 3.18
4157 7403 7.605449 ACATGGTGGAGAAATTATTTGAGTTG 58.395 34.615 0.00 0.00 0.00 3.16
4158 7404 7.781324 ACATGGTGGAGAAATTATTTGAGTT 57.219 32.000 0.00 0.00 0.00 3.01
4159 7405 8.877864 TTACATGGTGGAGAAATTATTTGAGT 57.122 30.769 0.00 0.00 0.00 3.41
4160 7406 9.573133 GTTTACATGGTGGAGAAATTATTTGAG 57.427 33.333 0.00 0.00 0.00 3.02
4161 7407 9.308000 AGTTTACATGGTGGAGAAATTATTTGA 57.692 29.630 0.00 0.00 0.00 2.69
4162 7408 9.573133 GAGTTTACATGGTGGAGAAATTATTTG 57.427 33.333 0.00 0.00 0.00 2.32
4163 7409 9.533831 AGAGTTTACATGGTGGAGAAATTATTT 57.466 29.630 0.00 0.00 0.00 1.40
4164 7410 8.960591 CAGAGTTTACATGGTGGAGAAATTATT 58.039 33.333 0.00 0.00 0.00 1.40
4165 7411 8.328758 TCAGAGTTTACATGGTGGAGAAATTAT 58.671 33.333 0.00 0.00 0.00 1.28
4166 7412 7.685481 TCAGAGTTTACATGGTGGAGAAATTA 58.315 34.615 0.00 0.00 0.00 1.40
4167 7413 6.542821 TCAGAGTTTACATGGTGGAGAAATT 58.457 36.000 0.00 0.00 0.00 1.82
4168 7414 6.126863 TCAGAGTTTACATGGTGGAGAAAT 57.873 37.500 0.00 0.00 0.00 2.17
4169 7415 5.560722 TCAGAGTTTACATGGTGGAGAAA 57.439 39.130 0.00 0.00 0.00 2.52
4170 7416 5.560722 TTCAGAGTTTACATGGTGGAGAA 57.439 39.130 0.00 0.00 0.00 2.87
4171 7417 5.305585 GTTTCAGAGTTTACATGGTGGAGA 58.694 41.667 0.00 0.00 0.00 3.71
4172 7418 4.152402 CGTTTCAGAGTTTACATGGTGGAG 59.848 45.833 0.00 0.00 0.00 3.86
4173 7419 4.062293 CGTTTCAGAGTTTACATGGTGGA 58.938 43.478 0.00 0.00 0.00 4.02
4174 7420 4.062293 TCGTTTCAGAGTTTACATGGTGG 58.938 43.478 0.00 0.00 0.00 4.61
4175 7421 5.666969 TTCGTTTCAGAGTTTACATGGTG 57.333 39.130 0.00 0.00 0.00 4.17
4176 7422 5.763204 ACATTCGTTTCAGAGTTTACATGGT 59.237 36.000 0.00 0.00 0.00 3.55
4177 7423 6.241207 ACATTCGTTTCAGAGTTTACATGG 57.759 37.500 0.00 0.00 0.00 3.66
4178 7424 7.576236 AGAACATTCGTTTCAGAGTTTACATG 58.424 34.615 0.00 0.00 34.75 3.21
4179 7425 7.730364 AGAACATTCGTTTCAGAGTTTACAT 57.270 32.000 0.00 0.00 34.75 2.29
4180 7426 8.651391 TTAGAACATTCGTTTCAGAGTTTACA 57.349 30.769 0.00 0.00 34.75 2.41
4184 7430 9.665264 GAAATTTAGAACATTCGTTTCAGAGTT 57.335 29.630 0.00 0.00 34.75 3.01
4185 7431 8.290325 GGAAATTTAGAACATTCGTTTCAGAGT 58.710 33.333 0.00 0.00 34.75 3.24
4186 7432 8.289618 TGGAAATTTAGAACATTCGTTTCAGAG 58.710 33.333 0.00 0.00 34.75 3.35
4187 7433 8.073768 GTGGAAATTTAGAACATTCGTTTCAGA 58.926 33.333 0.00 0.00 34.75 3.27
4188 7434 8.076178 AGTGGAAATTTAGAACATTCGTTTCAG 58.924 33.333 0.00 0.00 34.75 3.02
4189 7435 7.936584 AGTGGAAATTTAGAACATTCGTTTCA 58.063 30.769 0.00 0.00 34.75 2.69
4190 7436 8.797266 AAGTGGAAATTTAGAACATTCGTTTC 57.203 30.769 0.00 0.00 34.75 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.