Multiple sequence alignment - TraesCS6D01G245500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G245500 chr6D 100.000 5094 0 0 1 5094 347688540 347683447 0.000000e+00 9407
1 TraesCS6D01G245500 chr6D 88.372 172 19 1 4923 5094 347683180 347683350 6.690000e-49 206
2 TraesCS6D01G245500 chr6B 95.850 4289 141 23 573 4842 532338128 532342398 0.000000e+00 6900
3 TraesCS6D01G245500 chr6B 87.981 624 19 8 1 572 532337428 532338047 0.000000e+00 686
4 TraesCS6D01G245500 chr6B 96.000 125 5 0 4804 4928 532342397 532342521 2.400000e-48 204
5 TraesCS6D01G245500 chr6A 96.648 3640 82 10 906 4538 495685750 495689356 0.000000e+00 6010
6 TraesCS6D01G245500 chr6A 91.833 600 17 11 1 572 495684713 495685308 0.000000e+00 808
7 TraesCS6D01G245500 chr6A 95.297 404 13 3 573 975 495685388 495685786 2.000000e-178 636
8 TraesCS6D01G245500 chr6A 82.402 358 35 9 4536 4882 495689382 495689722 2.320000e-73 287
9 TraesCS6D01G245500 chr3A 90.184 163 14 1 4932 5094 719192538 719192698 1.440000e-50 211
10 TraesCS6D01G245500 chr5D 87.500 168 20 1 4928 5094 426400854 426400687 5.200000e-45 193
11 TraesCS6D01G245500 chr5D 84.756 164 23 2 4932 5094 214097343 214097505 4.080000e-36 163
12 TraesCS6D01G245500 chr2D 88.608 158 18 0 4932 5089 447837321 447837478 5.200000e-45 193
13 TraesCS6D01G245500 chr1A 86.503 163 20 2 4932 5093 538787831 538787992 1.460000e-40 178
14 TraesCS6D01G245500 chr4A 84.756 164 22 3 4932 5094 736937491 736937652 1.470000e-35 161
15 TraesCS6D01G245500 chr4D 84.663 163 22 3 4932 5093 12968658 12968498 5.280000e-35 159
16 TraesCS6D01G245500 chr3B 84.242 165 25 1 4931 5094 764496648 764496484 5.280000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G245500 chr6D 347683447 347688540 5093 True 9407.000000 9407 100.000 1 5094 1 chr6D.!!$R1 5093
1 TraesCS6D01G245500 chr6B 532337428 532342521 5093 False 2596.666667 6900 93.277 1 4928 3 chr6B.!!$F1 4927
2 TraesCS6D01G245500 chr6A 495684713 495689722 5009 False 1935.250000 6010 91.545 1 4882 4 chr6A.!!$F1 4881

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
816 951 1.177401 GGAGGCCCACTGTTCAATTC 58.823 55.000 0.00 0.0 0.00 2.17 F
1659 1830 1.673033 CCTTTCGCGGAGTCAGATGTT 60.673 52.381 6.13 0.0 0.00 2.71 F
2081 2252 1.685224 CATAGCCCCACCACACAGT 59.315 57.895 0.00 0.0 0.00 3.55 F
3773 3951 2.887152 GCCCAGGCAAGTTTCCTATATG 59.113 50.000 3.12 0.0 41.49 1.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2151 2322 1.818642 AAGCAGATGACTGGAGCAAC 58.181 50.000 0.00 0.0 43.62 4.17 R
2994 3169 1.329906 GTTGATTGCCTCTGATCTGCG 59.670 52.381 0.00 0.0 0.00 5.18 R
3776 3954 1.327303 TGGAAATTCCGCAAAGCAGT 58.673 45.000 7.60 0.0 40.17 4.40 R
4965 5217 0.111446 TTGAATTTGGAGCACCGGGA 59.889 50.000 6.32 0.0 39.42 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 3.006940 TCCAAATGGTTCTATGTCGCAC 58.993 45.455 0.00 0.00 36.34 5.34
128 155 5.550290 TGGCATACACTATACCATGTCATG 58.450 41.667 5.79 5.79 28.54 3.07
179 206 9.459640 CCACATCATTCTGATTCAAATACATTC 57.540 33.333 0.00 0.00 34.28 2.67
197 224 6.762702 ACATTCATTGTATCAGATTGCACA 57.237 33.333 0.00 0.00 36.57 4.57
227 254 6.035112 GTGATCTTAGGAGCTTAAAGTGTTCG 59.965 42.308 0.00 0.00 0.00 3.95
502 557 6.695429 TCTCTATTTATCAGCGCATCATCTT 58.305 36.000 11.47 0.00 0.00 2.40
519 574 8.977505 GCATCATCTTCAGAGTAACTTCTTATC 58.022 37.037 0.00 0.00 0.00 1.75
538 593 8.289939 TCTTATCGTAGTCAAATCCAGTAGTT 57.710 34.615 0.00 0.00 0.00 2.24
561 616 3.354948 TGCTGATCATGTAAACTGGCT 57.645 42.857 0.00 0.00 0.00 4.75
688 823 5.417580 CCCTAGTTAGTTGCCATTTGCTTTA 59.582 40.000 0.00 0.00 42.00 1.85
693 828 3.981211 AGTTGCCATTTGCTTTACTGTG 58.019 40.909 0.00 0.00 42.00 3.66
816 951 1.177401 GGAGGCCCACTGTTCAATTC 58.823 55.000 0.00 0.00 0.00 2.17
827 962 5.353956 CCACTGTTCAATTCACGGATCATAA 59.646 40.000 0.00 0.00 0.00 1.90
841 976 3.059597 GGATCATAAATCTGTTCGTGCGG 60.060 47.826 0.00 0.00 0.00 5.69
854 989 1.749063 TCGTGCGGACTGATAGACAAT 59.251 47.619 5.27 0.00 0.00 2.71
921 1090 8.698973 TGTTGATTTTTCTTGATACCTGGTTA 57.301 30.769 3.84 0.00 0.00 2.85
943 1112 3.230976 TCCCAAAGGAAAAGGCTTCTTC 58.769 45.455 0.00 6.89 40.08 2.87
993 1162 6.660949 AGCTTCTATCAGGCAACAAAATTACT 59.339 34.615 0.00 0.00 41.41 2.24
1028 1197 9.865321 GGATAGGTAACCCTTTTTGTATTTTTC 57.135 33.333 0.00 0.00 42.66 2.29
1069 1239 3.442273 TGTATTGAATTCCTGTTTCGGGC 59.558 43.478 2.27 0.00 0.00 6.13
1399 1569 8.150945 TGATGTTCTCTAGCATATTACTTTCCC 58.849 37.037 0.00 0.00 0.00 3.97
1659 1830 1.673033 CCTTTCGCGGAGTCAGATGTT 60.673 52.381 6.13 0.00 0.00 2.71
1858 2029 6.098409 TGTTAAAGCCTTCTAGCAGCTATAGT 59.902 38.462 1.54 0.00 35.30 2.12
1882 2053 5.471797 TCGTTCCAATTTTGCAGATCAACTA 59.528 36.000 0.00 0.00 33.73 2.24
2081 2252 1.685224 CATAGCCCCACCACACAGT 59.315 57.895 0.00 0.00 0.00 3.55
2151 2322 3.463527 TAGGTACCGAGCACCTGAAGTG 61.464 54.545 6.18 0.00 46.08 3.16
2246 2417 6.127366 ACACATGCTTCCAACTAATAAATGGG 60.127 38.462 0.00 0.00 34.89 4.00
2370 2541 7.603180 ACCATATCTTCTGCTATTGTGACTA 57.397 36.000 0.00 0.00 0.00 2.59
2815 2987 4.819630 TGTGTAGCCTTCACACCTTTTTAG 59.180 41.667 0.00 0.00 44.58 1.85
2818 2991 3.222603 AGCCTTCACACCTTTTTAGTGG 58.777 45.455 0.00 0.00 39.63 4.00
2994 3169 8.747538 ATAATCTTGGGTGGTTCTTTGTATAC 57.252 34.615 0.00 0.00 0.00 1.47
3100 3275 9.300681 TCAAATCTTTTGTCCTAGATGACATTT 57.699 29.630 3.09 0.00 44.27 2.32
3542 3717 7.013655 CCTGCTGCAAACATATCTATAAAACCT 59.986 37.037 3.02 0.00 0.00 3.50
3773 3951 2.887152 GCCCAGGCAAGTTTCCTATATG 59.113 50.000 3.12 0.00 41.49 1.78
3776 3954 5.200483 CCCAGGCAAGTTTCCTATATGAAA 58.800 41.667 0.00 0.00 31.52 2.69
3787 3965 3.876914 TCCTATATGAAACTGCTTTGCGG 59.123 43.478 0.00 0.00 41.29 5.69
3794 3972 2.438868 AACTGCTTTGCGGAATTTCC 57.561 45.000 5.28 5.28 38.46 3.13
4430 4609 4.256110 TGTCCTGTTCATGTGCAATCTAG 58.744 43.478 0.00 0.00 0.00 2.43
4538 4717 6.149308 CCTCCCTGGTCAAATTTTAAATTTGC 59.851 38.462 28.32 23.42 38.50 3.68
4539 4718 6.595682 TCCCTGGTCAAATTTTAAATTTGCA 58.404 32.000 28.32 22.02 38.50 4.08
4540 4719 6.484977 TCCCTGGTCAAATTTTAAATTTGCAC 59.515 34.615 28.32 24.95 38.50 4.57
4541 4720 6.293900 CCCTGGTCAAATTTTAAATTTGCACC 60.294 38.462 30.61 30.61 38.50 5.01
4542 4721 6.261826 CCTGGTCAAATTTTAAATTTGCACCA 59.738 34.615 33.38 33.38 41.34 4.17
4544 4723 7.646314 TGGTCAAATTTTAAATTTGCACCATG 58.354 30.769 32.93 18.36 40.25 3.66
4545 4724 7.500227 TGGTCAAATTTTAAATTTGCACCATGA 59.500 29.630 32.93 23.33 40.25 3.07
4546 4725 7.802720 GGTCAAATTTTAAATTTGCACCATGAC 59.197 33.333 31.32 24.41 38.11 3.06
4547 4726 8.341173 GTCAAATTTTAAATTTGCACCATGACA 58.659 29.630 28.32 12.44 38.50 3.58
4548 4727 8.557864 TCAAATTTTAAATTTGCACCATGACAG 58.442 29.630 28.32 9.29 38.50 3.51
4578 4786 8.357402 TCTCCCTTACATTTTCAAAGCTTTTAC 58.643 33.333 9.53 0.00 0.00 2.01
4588 4796 7.556733 TTTCAAAGCTTTTACGGTCTCTTTA 57.443 32.000 9.53 0.00 0.00 1.85
4597 4805 7.486802 TTTTACGGTCTCTTTAGTTTGAAGG 57.513 36.000 0.00 0.00 0.00 3.46
4631 4839 4.819769 TCCCTTTGAAATGCATTTGCTAC 58.180 39.130 28.67 14.59 42.66 3.58
4689 4897 6.884295 AGTCAATTTTTAGTCCATTCGATCCA 59.116 34.615 0.00 0.00 0.00 3.41
4728 4938 7.255942 GGGGTTCCACTATCAAATGATAATTGG 60.256 40.741 17.29 17.29 39.42 3.16
4729 4939 7.147976 GGTTCCACTATCAAATGATAATTGGC 58.852 38.462 18.01 10.23 38.70 4.52
4730 4940 7.201902 GGTTCCACTATCAAATGATAATTGGCA 60.202 37.037 18.01 10.29 38.70 4.92
4731 4941 7.275888 TCCACTATCAAATGATAATTGGCAC 57.724 36.000 18.01 0.00 38.70 5.01
4733 4943 7.341512 TCCACTATCAAATGATAATTGGCACAA 59.658 33.333 18.01 6.11 39.05 3.33
4734 4944 7.650504 CCACTATCAAATGATAATTGGCACAAG 59.349 37.037 13.72 1.39 39.05 3.16
4735 4945 7.650504 CACTATCAAATGATAATTGGCACAAGG 59.349 37.037 4.78 0.00 39.05 3.61
4737 4947 5.104859 ATCAAATGATAATTGGCACAAGGCA 60.105 36.000 0.00 0.00 39.85 4.75
4765 4975 2.040544 GCACCCCTCATTCACACCG 61.041 63.158 0.00 0.00 0.00 4.94
4774 4984 1.374252 ATTCACACCGCGTCCTCAC 60.374 57.895 4.92 0.00 0.00 3.51
4775 4985 2.781595 ATTCACACCGCGTCCTCACC 62.782 60.000 4.92 0.00 0.00 4.02
4792 5002 3.292460 TCACCGAAAAATTGGAAGGTGT 58.708 40.909 17.39 0.00 46.50 4.16
4799 5009 5.183140 CGAAAAATTGGAAGGTGTATGAGGT 59.817 40.000 0.00 0.00 0.00 3.85
4801 5011 6.994421 AAAATTGGAAGGTGTATGAGGTTT 57.006 33.333 0.00 0.00 0.00 3.27
4842 5094 8.157476 TGGATCTATAAAATTAAGCTCTCCCAC 58.843 37.037 0.00 0.00 0.00 4.61
4860 5112 0.250513 ACGATTTCTCCTGGGCTCAC 59.749 55.000 0.00 0.00 0.00 3.51
4905 5157 2.544685 CTCACCGAGGATGACATTGTC 58.455 52.381 9.93 9.93 0.00 3.18
4928 5180 7.337436 TGTCTGAAAGCATACAAATGATGATCA 59.663 33.333 0.00 0.00 34.84 2.92
4929 5181 8.350722 GTCTGAAAGCATACAAATGATGATCAT 58.649 33.333 8.25 8.25 39.09 2.45
4931 5183 8.865590 TGAAAGCATACAAATGATGATCATTG 57.134 30.769 20.30 15.84 45.57 2.82
4932 5184 7.923878 TGAAAGCATACAAATGATGATCATTGG 59.076 33.333 20.30 19.41 45.57 3.16
4933 5185 6.340962 AGCATACAAATGATGATCATTGGG 57.659 37.500 22.74 18.48 45.57 4.12
4934 5186 6.072649 AGCATACAAATGATGATCATTGGGA 58.927 36.000 22.74 17.00 45.57 4.37
4935 5187 6.551975 AGCATACAAATGATGATCATTGGGAA 59.448 34.615 22.74 12.97 45.57 3.97
4936 5188 7.070198 AGCATACAAATGATGATCATTGGGAAA 59.930 33.333 22.74 10.89 45.57 3.13
4937 5189 7.384115 GCATACAAATGATGATCATTGGGAAAG 59.616 37.037 22.74 14.20 45.57 2.62
4938 5190 6.862469 ACAAATGATGATCATTGGGAAAGT 57.138 33.333 22.74 11.93 45.57 2.66
4939 5191 7.959658 ACAAATGATGATCATTGGGAAAGTA 57.040 32.000 22.74 0.00 45.57 2.24
4940 5192 8.543293 ACAAATGATGATCATTGGGAAAGTAT 57.457 30.769 22.74 3.03 45.57 2.12
4941 5193 8.636213 ACAAATGATGATCATTGGGAAAGTATC 58.364 33.333 22.74 0.00 45.57 2.24
4942 5194 8.635328 CAAATGATGATCATTGGGAAAGTATCA 58.365 33.333 20.30 0.00 45.57 2.15
4943 5195 7.997773 ATGATGATCATTGGGAAAGTATCAG 57.002 36.000 10.14 0.00 32.13 2.90
4944 5196 6.301486 TGATGATCATTGGGAAAGTATCAGG 58.699 40.000 10.14 0.00 0.00 3.86
4945 5197 5.715439 TGATCATTGGGAAAGTATCAGGT 57.285 39.130 0.00 0.00 0.00 4.00
4946 5198 6.823286 TGATCATTGGGAAAGTATCAGGTA 57.177 37.500 0.00 0.00 0.00 3.08
4947 5199 6.591935 TGATCATTGGGAAAGTATCAGGTAC 58.408 40.000 0.00 0.00 0.00 3.34
4948 5200 6.386927 TGATCATTGGGAAAGTATCAGGTACT 59.613 38.462 0.00 0.00 45.56 2.73
4949 5201 6.235231 TCATTGGGAAAGTATCAGGTACTC 57.765 41.667 0.00 0.00 42.83 2.59
4950 5202 5.130477 TCATTGGGAAAGTATCAGGTACTCC 59.870 44.000 0.00 0.00 42.83 3.85
4951 5203 3.381335 TGGGAAAGTATCAGGTACTCCC 58.619 50.000 10.23 10.23 42.83 4.30
4952 5204 3.381335 GGGAAAGTATCAGGTACTCCCA 58.619 50.000 11.77 0.00 42.96 4.37
4953 5205 3.974642 GGGAAAGTATCAGGTACTCCCAT 59.025 47.826 11.77 0.00 42.96 4.00
4954 5206 4.040584 GGGAAAGTATCAGGTACTCCCATC 59.959 50.000 11.77 1.80 42.96 3.51
4955 5207 4.040584 GGAAAGTATCAGGTACTCCCATCC 59.959 50.000 0.00 0.00 42.83 3.51
4956 5208 4.561254 AAGTATCAGGTACTCCCATCCT 57.439 45.455 0.00 0.00 42.83 3.24
4957 5209 4.561254 AGTATCAGGTACTCCCATCCTT 57.439 45.455 0.00 0.00 39.46 3.36
4958 5210 4.227197 AGTATCAGGTACTCCCATCCTTG 58.773 47.826 0.00 0.00 39.46 3.61
4959 5211 1.879575 TCAGGTACTCCCATCCTTGG 58.120 55.000 0.00 0.00 39.04 3.61
4976 5228 3.139565 GGATACTCCCGGTGCTCC 58.860 66.667 0.00 0.00 0.00 4.70
4977 5229 1.760875 GGATACTCCCGGTGCTCCA 60.761 63.158 0.00 0.00 33.77 3.86
4978 5230 1.335132 GGATACTCCCGGTGCTCCAA 61.335 60.000 0.00 0.00 33.77 3.53
4979 5231 0.539986 GATACTCCCGGTGCTCCAAA 59.460 55.000 0.00 0.00 0.00 3.28
4980 5232 1.141053 GATACTCCCGGTGCTCCAAAT 59.859 52.381 0.00 0.00 0.00 2.32
4981 5233 0.988832 TACTCCCGGTGCTCCAAATT 59.011 50.000 0.00 0.00 0.00 1.82
4982 5234 0.322546 ACTCCCGGTGCTCCAAATTC 60.323 55.000 0.00 0.00 0.00 2.17
4983 5235 0.322456 CTCCCGGTGCTCCAAATTCA 60.322 55.000 0.00 0.00 0.00 2.57
4984 5236 0.111446 TCCCGGTGCTCCAAATTCAA 59.889 50.000 0.00 0.00 0.00 2.69
4985 5237 0.965439 CCCGGTGCTCCAAATTCAAA 59.035 50.000 0.00 0.00 0.00 2.69
4986 5238 1.342819 CCCGGTGCTCCAAATTCAAAA 59.657 47.619 0.00 0.00 0.00 2.44
4987 5239 2.403259 CCGGTGCTCCAAATTCAAAAC 58.597 47.619 5.52 0.00 0.00 2.43
4988 5240 2.223923 CCGGTGCTCCAAATTCAAAACA 60.224 45.455 5.52 0.00 0.00 2.83
4989 5241 2.794350 CGGTGCTCCAAATTCAAAACAC 59.206 45.455 5.52 0.00 0.00 3.32
4990 5242 3.130633 GGTGCTCCAAATTCAAAACACC 58.869 45.455 0.00 0.00 39.52 4.16
4991 5243 3.431486 GGTGCTCCAAATTCAAAACACCA 60.431 43.478 12.51 0.00 44.50 4.17
4992 5244 4.379652 GTGCTCCAAATTCAAAACACCAT 58.620 39.130 0.00 0.00 0.00 3.55
4993 5245 4.815846 GTGCTCCAAATTCAAAACACCATT 59.184 37.500 0.00 0.00 0.00 3.16
4994 5246 5.050159 GTGCTCCAAATTCAAAACACCATTC 60.050 40.000 0.00 0.00 0.00 2.67
4995 5247 5.163322 TGCTCCAAATTCAAAACACCATTCT 60.163 36.000 0.00 0.00 0.00 2.40
4996 5248 5.759763 GCTCCAAATTCAAAACACCATTCTT 59.240 36.000 0.00 0.00 0.00 2.52
4997 5249 6.928492 GCTCCAAATTCAAAACACCATTCTTA 59.072 34.615 0.00 0.00 0.00 2.10
4998 5250 7.440856 GCTCCAAATTCAAAACACCATTCTTAA 59.559 33.333 0.00 0.00 0.00 1.85
4999 5251 9.323985 CTCCAAATTCAAAACACCATTCTTAAA 57.676 29.630 0.00 0.00 0.00 1.52
5000 5252 9.844257 TCCAAATTCAAAACACCATTCTTAAAT 57.156 25.926 0.00 0.00 0.00 1.40
5001 5253 9.881529 CCAAATTCAAAACACCATTCTTAAATG 57.118 29.630 0.00 0.00 41.69 2.32
5050 5302 7.765695 ATGAATGTTTACAAGGAATGTGACT 57.234 32.000 0.00 0.00 43.77 3.41
5051 5303 8.862325 ATGAATGTTTACAAGGAATGTGACTA 57.138 30.769 0.00 0.00 43.77 2.59
5052 5304 8.094798 TGAATGTTTACAAGGAATGTGACTAC 57.905 34.615 0.00 0.00 43.77 2.73
5053 5305 7.717436 TGAATGTTTACAAGGAATGTGACTACA 59.283 33.333 0.00 0.00 43.77 2.74
5054 5306 8.458573 AATGTTTACAAGGAATGTGACTACAA 57.541 30.769 0.00 0.00 43.77 2.41
5055 5307 7.254227 TGTTTACAAGGAATGTGACTACAAC 57.746 36.000 0.00 0.00 43.77 3.32
5056 5308 7.051623 TGTTTACAAGGAATGTGACTACAACT 58.948 34.615 0.00 0.00 43.77 3.16
5057 5309 7.225931 TGTTTACAAGGAATGTGACTACAACTC 59.774 37.037 0.00 0.00 43.77 3.01
5058 5310 4.642429 ACAAGGAATGTGACTACAACTCC 58.358 43.478 0.00 0.00 41.93 3.85
5059 5311 4.348168 ACAAGGAATGTGACTACAACTCCT 59.652 41.667 8.02 8.02 46.85 3.69
5060 5312 5.542635 ACAAGGAATGTGACTACAACTCCTA 59.457 40.000 12.20 0.00 45.41 2.94
5061 5313 6.042781 ACAAGGAATGTGACTACAACTCCTAA 59.957 38.462 12.20 0.00 45.41 2.69
5062 5314 6.681729 AGGAATGTGACTACAACTCCTAAA 57.318 37.500 10.84 0.00 44.83 1.85
5063 5315 7.074653 AGGAATGTGACTACAACTCCTAAAA 57.925 36.000 10.84 0.00 44.83 1.52
5064 5316 7.514721 AGGAATGTGACTACAACTCCTAAAAA 58.485 34.615 10.84 0.00 44.83 1.94
5065 5317 8.164070 AGGAATGTGACTACAACTCCTAAAAAT 58.836 33.333 10.84 0.00 44.83 1.82
5066 5318 8.793592 GGAATGTGACTACAACTCCTAAAAATT 58.206 33.333 0.00 0.00 40.84 1.82
5068 5320 9.965824 AATGTGACTACAACTCCTAAAAATTTG 57.034 29.630 0.00 0.00 40.84 2.32
5069 5321 8.740123 TGTGACTACAACTCCTAAAAATTTGA 57.260 30.769 0.00 0.00 32.88 2.69
5070 5322 8.836413 TGTGACTACAACTCCTAAAAATTTGAG 58.164 33.333 0.00 0.00 32.88 3.02
5071 5323 9.052759 GTGACTACAACTCCTAAAAATTTGAGA 57.947 33.333 9.54 0.00 0.00 3.27
5072 5324 9.793259 TGACTACAACTCCTAAAAATTTGAGAT 57.207 29.630 9.54 0.00 0.00 2.75
5074 5326 9.232473 ACTACAACTCCTAAAAATTTGAGATCC 57.768 33.333 9.54 0.00 0.00 3.36
5075 5327 9.231297 CTACAACTCCTAAAAATTTGAGATCCA 57.769 33.333 9.54 0.00 0.00 3.41
5076 5328 8.477419 ACAACTCCTAAAAATTTGAGATCCAA 57.523 30.769 9.54 0.00 0.00 3.53
5078 5330 9.196552 CAACTCCTAAAAATTTGAGATCCAAAC 57.803 33.333 9.54 0.00 46.41 2.93
5079 5331 8.712228 ACTCCTAAAAATTTGAGATCCAAACT 57.288 30.769 9.54 0.00 46.41 2.66
5080 5332 8.797438 ACTCCTAAAAATTTGAGATCCAAACTC 58.203 33.333 9.54 0.00 46.41 3.01
5081 5333 8.122472 TCCTAAAAATTTGAGATCCAAACTCC 57.878 34.615 10.37 0.00 46.41 3.85
5082 5334 7.728083 TCCTAAAAATTTGAGATCCAAACTCCA 59.272 33.333 10.37 0.00 46.41 3.86
5083 5335 8.367156 CCTAAAAATTTGAGATCCAAACTCCAA 58.633 33.333 10.37 0.00 46.41 3.53
5084 5336 9.762933 CTAAAAATTTGAGATCCAAACTCCAAA 57.237 29.630 10.37 0.00 46.41 3.28
5086 5338 8.611654 AAAATTTGAGATCCAAACTCCAAATG 57.388 30.769 10.37 0.00 46.41 2.32
5087 5339 4.789012 TTGAGATCCAAACTCCAAATGC 57.211 40.909 0.00 0.00 33.95 3.56
5088 5340 3.765381 TGAGATCCAAACTCCAAATGCA 58.235 40.909 0.00 0.00 33.95 3.96
5089 5341 3.507233 TGAGATCCAAACTCCAAATGCAC 59.493 43.478 0.00 0.00 33.95 4.57
5090 5342 3.499338 AGATCCAAACTCCAAATGCACA 58.501 40.909 0.00 0.00 0.00 4.57
5091 5343 4.091549 AGATCCAAACTCCAAATGCACAT 58.908 39.130 0.00 0.00 0.00 3.21
5092 5344 4.529377 AGATCCAAACTCCAAATGCACATT 59.471 37.500 0.00 0.00 0.00 2.71
5093 5345 3.992643 TCCAAACTCCAAATGCACATTG 58.007 40.909 7.01 7.01 0.00 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 2.291365 TCCATGAAGCATGAACATCGG 58.709 47.619 8.87 3.75 43.81 4.18
128 155 6.021704 GTCGATTATAAAACTTTTTGCGCTCC 60.022 38.462 9.73 0.00 0.00 4.70
197 224 5.683876 TTAAGCTCCTAAGATCACTGCTT 57.316 39.130 0.00 0.00 41.32 3.91
210 237 3.746045 TGACGAACACTTTAAGCTCCT 57.254 42.857 0.00 0.00 0.00 3.69
227 254 3.636764 ACCACTTTTCCCATGTCTTTGAC 59.363 43.478 0.00 0.00 0.00 3.18
502 557 8.557592 TTGACTACGATAAGAAGTTACTCTGA 57.442 34.615 0.00 0.00 0.00 3.27
519 574 5.005779 GCATCAACTACTGGATTTGACTACG 59.994 44.000 0.00 0.00 32.21 3.51
538 593 3.628942 GCCAGTTTACATGATCAGCATCA 59.371 43.478 0.00 0.00 43.45 3.07
561 616 6.438186 TCAAGAGATATGGGCACATCATTA 57.562 37.500 3.67 0.00 38.53 1.90
693 828 1.834263 AGCCTTGACCTCAGATGGTAC 59.166 52.381 0.00 0.00 41.00 3.34
776 911 2.031682 CACTAGTTTGTGCTGTCTTGGC 60.032 50.000 0.00 0.00 0.00 4.52
816 951 4.550831 GCACGAACAGATTTATGATCCGTG 60.551 45.833 0.00 0.00 33.78 4.94
827 962 0.317160 TCAGTCCGCACGAACAGATT 59.683 50.000 0.00 0.00 0.00 2.40
841 976 7.316640 AGCGACCAATATATTGTCTATCAGTC 58.683 38.462 21.20 17.16 36.06 3.51
854 989 7.820386 TGTTTCAAAGTCTAAGCGACCAATATA 59.180 33.333 0.00 0.00 43.91 0.86
921 1090 3.549898 AGAAGCCTTTTCCTTTGGGAT 57.450 42.857 0.00 0.00 41.87 3.85
1028 1197 7.232330 TCAATACAACTGATATCCAGAGGAGAG 59.768 40.741 0.00 0.00 45.78 3.20
1042 1212 6.072728 CCGAAACAGGAATTCAATACAACTGA 60.073 38.462 7.93 0.00 0.00 3.41
1069 1239 3.119708 AGGCGCTCTAAGAAAAATGCAAG 60.120 43.478 7.64 0.00 0.00 4.01
1220 1390 5.918011 TCAACTTTGTTGTTTCACAGTTCAC 59.082 36.000 9.78 0.00 36.57 3.18
1236 1406 8.506140 AATATGAAACATTGACGTCAACTTTG 57.494 30.769 31.87 26.56 38.86 2.77
1561 1732 6.867816 TGGACAATATTCAACAAAAGCATGAC 59.132 34.615 0.00 0.00 0.00 3.06
1659 1830 5.957842 AAATCTGAAAGCACCAATTACGA 57.042 34.783 0.00 0.00 0.00 3.43
1858 2029 4.278170 AGTTGATCTGCAAAATTGGAACGA 59.722 37.500 0.00 0.00 38.44 3.85
2005 2176 3.081061 TGTATGGTGGTGCAGATGAAAC 58.919 45.455 0.00 0.00 0.00 2.78
2109 2280 2.528564 AGACATTGAAACACATGGGGG 58.471 47.619 0.00 0.00 0.00 5.40
2151 2322 1.818642 AAGCAGATGACTGGAGCAAC 58.181 50.000 0.00 0.00 43.62 4.17
2246 2417 7.934120 ACATATCTACCAAGTTATGAAGAAGGC 59.066 37.037 9.39 0.00 37.49 4.35
2597 2768 4.700213 CCCGGAGAATCACAACAAAAGTAT 59.300 41.667 0.73 0.00 36.25 2.12
2976 3151 2.038689 TGCGTATACAAAGAACCACCCA 59.961 45.455 3.32 0.00 0.00 4.51
2994 3169 1.329906 GTTGATTGCCTCTGATCTGCG 59.670 52.381 0.00 0.00 0.00 5.18
3100 3275 5.429681 TTAGGAAATCCAATGAGTTCGGA 57.570 39.130 1.67 0.00 44.46 4.55
3542 3717 7.704578 ATTACCGATCTTAGATAAGCTGCTA 57.295 36.000 0.90 0.00 33.40 3.49
3773 3951 2.731451 GGAAATTCCGCAAAGCAGTTTC 59.269 45.455 0.00 0.00 0.00 2.78
3776 3954 1.327303 TGGAAATTCCGCAAAGCAGT 58.673 45.000 7.60 0.00 40.17 4.40
3787 3965 4.248058 CACAAGCTTTGGGATGGAAATTC 58.752 43.478 0.00 0.00 35.62 2.17
3794 3972 1.542915 CAGACCACAAGCTTTGGGATG 59.457 52.381 23.11 18.33 38.59 3.51
3843 4021 1.527380 GCGTTCCCTGTGGTTCCAA 60.527 57.895 0.00 0.00 0.00 3.53
4430 4609 0.534203 TTGGAGGGTTTGTCGACTGC 60.534 55.000 17.92 6.58 0.00 4.40
4488 4667 9.903682 GGATACACTAACGTGCTCTATTAAATA 57.096 33.333 0.00 0.00 45.10 1.40
4516 4695 6.293900 GGTGCAAATTTAAAATTTGACCAGGG 60.294 38.462 18.90 0.00 40.42 4.45
4538 4717 4.970860 AAGGGAGATATCTGTCATGGTG 57.029 45.455 10.74 0.00 0.00 4.17
4539 4718 5.467738 TGTAAGGGAGATATCTGTCATGGT 58.532 41.667 10.74 0.00 0.00 3.55
4540 4719 6.617782 ATGTAAGGGAGATATCTGTCATGG 57.382 41.667 10.74 0.00 0.00 3.66
4541 4720 8.915057 AAAATGTAAGGGAGATATCTGTCATG 57.085 34.615 10.74 0.00 0.00 3.07
4542 4721 8.717717 TGAAAATGTAAGGGAGATATCTGTCAT 58.282 33.333 10.74 0.00 0.00 3.06
4544 4723 8.964476 TTGAAAATGTAAGGGAGATATCTGTC 57.036 34.615 10.74 2.02 0.00 3.51
4545 4724 9.401058 CTTTGAAAATGTAAGGGAGATATCTGT 57.599 33.333 10.74 0.00 0.00 3.41
4546 4725 8.348507 GCTTTGAAAATGTAAGGGAGATATCTG 58.651 37.037 10.74 0.00 0.00 2.90
4547 4726 8.277918 AGCTTTGAAAATGTAAGGGAGATATCT 58.722 33.333 4.47 4.47 0.00 1.98
4548 4727 8.457238 AGCTTTGAAAATGTAAGGGAGATATC 57.543 34.615 0.00 0.00 0.00 1.63
4578 4786 6.373186 AAAACCTTCAAACTAAAGAGACCG 57.627 37.500 0.00 0.00 0.00 4.79
4603 4811 6.238703 GCAAATGCATTTCAAAGGGAAGAAAA 60.239 34.615 21.70 0.00 41.59 2.29
4607 4815 4.320870 AGCAAATGCATTTCAAAGGGAAG 58.679 39.130 21.70 8.62 45.16 3.46
4608 4816 4.354893 AGCAAATGCATTTCAAAGGGAA 57.645 36.364 21.70 0.00 45.16 3.97
4610 4818 4.628333 CAGTAGCAAATGCATTTCAAAGGG 59.372 41.667 21.70 10.70 45.16 3.95
4611 4819 4.628333 CCAGTAGCAAATGCATTTCAAAGG 59.372 41.667 21.70 14.26 45.16 3.11
4612 4820 5.119588 CACCAGTAGCAAATGCATTTCAAAG 59.880 40.000 21.70 11.76 45.16 2.77
4613 4821 4.989797 CACCAGTAGCAAATGCATTTCAAA 59.010 37.500 21.70 7.18 45.16 2.69
4614 4822 4.280425 TCACCAGTAGCAAATGCATTTCAA 59.720 37.500 21.70 7.53 45.16 2.69
4615 4823 3.825585 TCACCAGTAGCAAATGCATTTCA 59.174 39.130 21.70 7.54 45.16 2.69
4616 4824 4.082571 ACTCACCAGTAGCAAATGCATTTC 60.083 41.667 21.70 15.64 45.16 2.17
4617 4825 3.828451 ACTCACCAGTAGCAAATGCATTT 59.172 39.130 18.99 18.99 45.16 2.32
4618 4826 3.424703 ACTCACCAGTAGCAAATGCATT 58.575 40.909 5.99 5.99 45.16 3.56
4619 4827 3.077484 ACTCACCAGTAGCAAATGCAT 57.923 42.857 8.28 0.00 45.16 3.96
4631 4839 4.053295 CAATTTTCAGGCAAACTCACCAG 58.947 43.478 0.00 0.00 0.00 4.00
4728 4938 2.543641 GCAATATCCTTTGCCTTGTGC 58.456 47.619 0.00 0.00 44.94 4.57
4737 4947 3.979501 ATGAGGGGTGCAATATCCTTT 57.020 42.857 0.00 0.00 0.00 3.11
4765 4975 1.401018 CCAATTTTTCGGTGAGGACGC 60.401 52.381 0.00 0.00 0.00 5.19
4774 4984 5.393027 CCTCATACACCTTCCAATTTTTCGG 60.393 44.000 0.00 0.00 0.00 4.30
4775 4985 5.183140 ACCTCATACACCTTCCAATTTTTCG 59.817 40.000 0.00 0.00 0.00 3.46
4792 5002 6.916360 AGCATTTTCCTTGAAAACCTCATA 57.084 33.333 4.28 0.00 42.98 2.15
4799 5009 6.423776 AGATCCAAGCATTTTCCTTGAAAA 57.576 33.333 4.64 4.64 44.04 2.29
4801 5011 8.821686 TTATAGATCCAAGCATTTTCCTTGAA 57.178 30.769 2.93 0.00 41.64 2.69
4842 5094 0.250234 TGTGAGCCCAGGAGAAATCG 59.750 55.000 0.00 0.00 0.00 3.34
4860 5112 2.346803 AGGTCAACGAAATCACCGATG 58.653 47.619 0.00 0.00 33.78 3.84
4869 5121 2.557317 GTGAGGTCAAGGTCAACGAAA 58.443 47.619 0.00 0.00 0.00 3.46
4905 5157 8.968242 CAATGATCATCATTTGTATGCTTTCAG 58.032 33.333 10.38 0.00 44.03 3.02
4928 5180 4.412528 GGGAGTACCTGATACTTTCCCAAT 59.587 45.833 2.34 0.00 44.64 3.16
4929 5181 3.778629 GGGAGTACCTGATACTTTCCCAA 59.221 47.826 2.34 0.00 44.64 4.12
4930 5182 3.381335 GGGAGTACCTGATACTTTCCCA 58.619 50.000 2.34 0.00 44.64 4.37
4931 5183 3.381335 TGGGAGTACCTGATACTTTCCC 58.619 50.000 0.44 0.44 44.64 3.97
4932 5184 4.040584 GGATGGGAGTACCTGATACTTTCC 59.959 50.000 0.00 0.00 44.64 3.13
4933 5185 4.902448 AGGATGGGAGTACCTGATACTTTC 59.098 45.833 0.00 0.00 44.64 2.62
4934 5186 4.897051 AGGATGGGAGTACCTGATACTTT 58.103 43.478 0.00 0.00 44.64 2.66
4935 5187 4.561254 AGGATGGGAGTACCTGATACTT 57.439 45.455 0.00 0.00 44.64 2.24
4936 5188 4.941793 CCAAGGATGGGAGTACCTGATACT 60.942 50.000 0.00 0.00 41.58 2.12
4937 5189 3.325135 CCAAGGATGGGAGTACCTGATAC 59.675 52.174 0.00 0.00 43.51 2.24
4938 5190 3.587498 CCAAGGATGGGAGTACCTGATA 58.413 50.000 0.00 0.00 43.51 2.15
4939 5191 2.412591 CCAAGGATGGGAGTACCTGAT 58.587 52.381 0.00 0.00 43.51 2.90
4940 5192 1.879575 CCAAGGATGGGAGTACCTGA 58.120 55.000 0.00 0.00 43.51 3.86
4960 5212 0.539986 TTTGGAGCACCGGGAGTATC 59.460 55.000 6.32 0.81 39.42 2.24
4961 5213 1.213296 ATTTGGAGCACCGGGAGTAT 58.787 50.000 6.32 0.00 39.42 2.12
4962 5214 0.988832 AATTTGGAGCACCGGGAGTA 59.011 50.000 6.32 0.00 39.42 2.59
4963 5215 0.322546 GAATTTGGAGCACCGGGAGT 60.323 55.000 6.32 0.00 39.42 3.85
4964 5216 0.322456 TGAATTTGGAGCACCGGGAG 60.322 55.000 6.32 0.00 39.42 4.30
4965 5217 0.111446 TTGAATTTGGAGCACCGGGA 59.889 50.000 6.32 0.00 39.42 5.14
4966 5218 0.965439 TTTGAATTTGGAGCACCGGG 59.035 50.000 6.32 0.00 39.42 5.73
4967 5219 2.223923 TGTTTTGAATTTGGAGCACCGG 60.224 45.455 0.00 0.00 39.42 5.28
4968 5220 2.794350 GTGTTTTGAATTTGGAGCACCG 59.206 45.455 0.00 0.00 39.42 4.94
4969 5221 3.130633 GGTGTTTTGAATTTGGAGCACC 58.869 45.455 0.00 0.00 38.37 5.01
4970 5222 3.791245 TGGTGTTTTGAATTTGGAGCAC 58.209 40.909 0.00 0.00 0.00 4.40
4971 5223 4.686191 ATGGTGTTTTGAATTTGGAGCA 57.314 36.364 0.00 0.00 0.00 4.26
4972 5224 5.299949 AGAATGGTGTTTTGAATTTGGAGC 58.700 37.500 0.00 0.00 0.00 4.70
4973 5225 8.885494 TTAAGAATGGTGTTTTGAATTTGGAG 57.115 30.769 0.00 0.00 0.00 3.86
4974 5226 9.844257 ATTTAAGAATGGTGTTTTGAATTTGGA 57.156 25.926 0.00 0.00 0.00 3.53
4975 5227 9.881529 CATTTAAGAATGGTGTTTTGAATTTGG 57.118 29.630 0.00 0.00 39.17 3.28
5024 5276 9.466497 AGTCACATTCCTTGTAAACATTCATAT 57.534 29.630 0.00 0.00 36.57 1.78
5025 5277 8.862325 AGTCACATTCCTTGTAAACATTCATA 57.138 30.769 0.00 0.00 36.57 2.15
5026 5278 7.765695 AGTCACATTCCTTGTAAACATTCAT 57.234 32.000 0.00 0.00 36.57 2.57
5027 5279 7.717436 TGTAGTCACATTCCTTGTAAACATTCA 59.283 33.333 0.00 0.00 36.57 2.57
5028 5280 8.094798 TGTAGTCACATTCCTTGTAAACATTC 57.905 34.615 0.00 0.00 36.57 2.67
5029 5281 8.349983 GTTGTAGTCACATTCCTTGTAAACATT 58.650 33.333 0.00 0.00 36.57 2.71
5030 5282 7.719633 AGTTGTAGTCACATTCCTTGTAAACAT 59.280 33.333 0.00 0.00 36.57 2.71
5031 5283 7.051623 AGTTGTAGTCACATTCCTTGTAAACA 58.948 34.615 0.00 0.00 36.57 2.83
5032 5284 7.307811 GGAGTTGTAGTCACATTCCTTGTAAAC 60.308 40.741 0.00 0.00 36.57 2.01
5033 5285 6.708949 GGAGTTGTAGTCACATTCCTTGTAAA 59.291 38.462 0.00 0.00 36.57 2.01
5034 5286 6.042781 AGGAGTTGTAGTCACATTCCTTGTAA 59.957 38.462 5.84 0.00 42.26 2.41
5035 5287 5.542635 AGGAGTTGTAGTCACATTCCTTGTA 59.457 40.000 5.84 0.00 42.26 2.41
5036 5288 4.348168 AGGAGTTGTAGTCACATTCCTTGT 59.652 41.667 5.84 0.00 42.26 3.16
5037 5289 4.899502 AGGAGTTGTAGTCACATTCCTTG 58.100 43.478 5.84 0.00 42.26 3.61
5038 5290 6.681729 TTAGGAGTTGTAGTCACATTCCTT 57.318 37.500 13.34 3.30 42.26 3.36
5039 5291 6.681729 TTTAGGAGTTGTAGTCACATTCCT 57.318 37.500 12.92 12.92 44.76 3.36
5040 5292 7.739498 TTTTTAGGAGTTGTAGTCACATTCC 57.261 36.000 0.00 0.00 38.31 3.01
5042 5294 9.965824 CAAATTTTTAGGAGTTGTAGTCACATT 57.034 29.630 0.00 0.00 33.76 2.71
5043 5295 9.349713 TCAAATTTTTAGGAGTTGTAGTCACAT 57.650 29.630 0.00 0.00 33.76 3.21
5044 5296 8.740123 TCAAATTTTTAGGAGTTGTAGTCACA 57.260 30.769 0.00 0.00 0.00 3.58
5045 5297 9.052759 TCTCAAATTTTTAGGAGTTGTAGTCAC 57.947 33.333 3.88 0.00 0.00 3.67
5046 5298 9.793259 ATCTCAAATTTTTAGGAGTTGTAGTCA 57.207 29.630 3.88 0.00 0.00 3.41
5048 5300 9.232473 GGATCTCAAATTTTTAGGAGTTGTAGT 57.768 33.333 0.00 0.00 0.00 2.73
5049 5301 9.231297 TGGATCTCAAATTTTTAGGAGTTGTAG 57.769 33.333 0.00 0.00 0.00 2.74
5050 5302 9.581289 TTGGATCTCAAATTTTTAGGAGTTGTA 57.419 29.630 0.00 0.00 31.46 2.41
5051 5303 8.477419 TTGGATCTCAAATTTTTAGGAGTTGT 57.523 30.769 0.00 0.00 31.46 3.32
5052 5304 9.196552 GTTTGGATCTCAAATTTTTAGGAGTTG 57.803 33.333 11.07 0.00 45.79 3.16
5053 5305 9.147732 AGTTTGGATCTCAAATTTTTAGGAGTT 57.852 29.630 11.07 0.00 45.79 3.01
5054 5306 8.712228 AGTTTGGATCTCAAATTTTTAGGAGT 57.288 30.769 11.07 0.00 45.79 3.85
5055 5307 8.246871 GGAGTTTGGATCTCAAATTTTTAGGAG 58.753 37.037 11.07 0.00 45.79 3.69
5056 5308 7.728083 TGGAGTTTGGATCTCAAATTTTTAGGA 59.272 33.333 11.07 0.00 45.79 2.94
5057 5309 7.895759 TGGAGTTTGGATCTCAAATTTTTAGG 58.104 34.615 11.07 0.00 45.79 2.69
5058 5310 9.762933 TTTGGAGTTTGGATCTCAAATTTTTAG 57.237 29.630 11.07 0.00 45.79 1.85
5060 5312 9.059260 CATTTGGAGTTTGGATCTCAAATTTTT 57.941 29.630 11.07 1.51 45.79 1.94
5061 5313 7.173735 GCATTTGGAGTTTGGATCTCAAATTTT 59.826 33.333 11.07 3.31 45.79 1.82
5062 5314 6.652062 GCATTTGGAGTTTGGATCTCAAATTT 59.348 34.615 11.07 0.00 45.79 1.82
5063 5315 6.168389 GCATTTGGAGTTTGGATCTCAAATT 58.832 36.000 11.07 8.01 45.79 1.82
5064 5316 5.246656 TGCATTTGGAGTTTGGATCTCAAAT 59.753 36.000 11.07 0.00 45.79 2.32
5065 5317 4.588106 TGCATTTGGAGTTTGGATCTCAAA 59.412 37.500 5.55 5.55 42.50 2.69
5066 5318 4.022068 GTGCATTTGGAGTTTGGATCTCAA 60.022 41.667 0.00 0.00 34.04 3.02
5067 5319 3.507233 GTGCATTTGGAGTTTGGATCTCA 59.493 43.478 0.00 0.00 34.04 3.27
5068 5320 3.507233 TGTGCATTTGGAGTTTGGATCTC 59.493 43.478 0.00 0.00 0.00 2.75
5069 5321 3.499338 TGTGCATTTGGAGTTTGGATCT 58.501 40.909 0.00 0.00 0.00 2.75
5070 5322 3.940209 TGTGCATTTGGAGTTTGGATC 57.060 42.857 0.00 0.00 0.00 3.36
5071 5323 4.571919 CAATGTGCATTTGGAGTTTGGAT 58.428 39.130 0.00 0.00 0.00 3.41
5072 5324 3.992643 CAATGTGCATTTGGAGTTTGGA 58.007 40.909 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.