Multiple sequence alignment - TraesCS6D01G245300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G245300 chr6D 100.000 5278 0 0 1 5278 347432395 347437672 0.000000e+00 9747.0
1 TraesCS6D01G245300 chr6D 95.702 349 14 1 3 350 296371450 296371102 1.280000e-155 560.0
2 TraesCS6D01G245300 chr6D 96.703 91 3 0 5187 5277 41907505 41907595 9.150000e-33 152.0
3 TraesCS6D01G245300 chr6D 94.624 93 4 1 5185 5277 447856590 447856681 5.510000e-30 143.0
4 TraesCS6D01G245300 chr6B 89.594 2883 121 63 351 3167 532904169 532901400 0.000000e+00 3496.0
5 TraesCS6D01G245300 chr6B 90.268 1788 81 34 3460 5188 532901096 532899343 0.000000e+00 2252.0
6 TraesCS6D01G245300 chr6B 94.366 142 8 0 3182 3323 532901416 532901275 8.900000e-53 219.0
7 TraesCS6D01G245300 chr6B 84.259 108 10 4 3352 3452 532901277 532901170 1.210000e-16 99.0
8 TraesCS6D01G245300 chr6A 91.131 1477 55 28 351 1770 496017734 496016277 0.000000e+00 1932.0
9 TraesCS6D01G245300 chr6A 88.904 1451 69 22 1765 3167 496016252 496014846 0.000000e+00 1703.0
10 TraesCS6D01G245300 chr6A 85.779 1547 120 51 3684 5188 496011295 496009807 0.000000e+00 1546.0
11 TraesCS6D01G245300 chr6A 94.505 91 5 0 5188 5278 53154202 53154112 1.980000e-29 141.0
12 TraesCS6D01G245300 chr6A 94.737 57 3 0 3188 3244 496014856 496014800 7.280000e-14 89.8
13 TraesCS6D01G245300 chr4D 95.989 349 13 1 3 350 64225844 64226192 2.760000e-157 566.0
14 TraesCS6D01G245300 chr4D 94.958 357 15 2 3 356 381437304 381437660 1.660000e-154 556.0
15 TraesCS6D01G245300 chr4D 95.402 348 15 1 3 350 444097351 444097005 2.150000e-153 553.0
16 TraesCS6D01G245300 chr2D 95.989 349 12 2 3 350 592372633 592372980 2.760000e-157 566.0
17 TraesCS6D01G245300 chr2D 90.576 191 17 1 1919 2109 546209779 546209968 8.770000e-63 252.0
18 TraesCS6D01G245300 chr2D 83.824 136 18 4 1954 2087 506941875 506941742 5.550000e-25 126.0
19 TraesCS6D01G245300 chr5D 95.702 349 14 1 3 350 532712478 532712826 1.280000e-155 560.0
20 TraesCS6D01G245300 chr5D 95.640 344 15 0 7 350 45862241 45862584 2.150000e-153 553.0
21 TraesCS6D01G245300 chr5D 95.604 91 4 0 5188 5278 98663471 98663561 4.260000e-31 147.0
22 TraesCS6D01G245300 chr5D 96.512 86 3 0 5193 5278 544617554 544617469 5.510000e-30 143.0
23 TraesCS6D01G245300 chr7D 94.460 361 17 2 3 360 611047473 611047833 2.150000e-153 553.0
24 TraesCS6D01G245300 chr7D 89.933 149 12 3 1941 2087 22588428 22588281 6.980000e-44 189.0
25 TraesCS6D01G245300 chr7D 94.505 91 5 0 5188 5278 126990755 126990665 1.980000e-29 141.0
26 TraesCS6D01G245300 chr1D 94.413 358 17 2 3 358 234862108 234861752 9.990000e-152 547.0
27 TraesCS6D01G245300 chr1D 96.512 86 3 0 5193 5278 446557900 446557815 5.510000e-30 143.0
28 TraesCS6D01G245300 chr2A 90.722 194 18 0 1919 2112 687050238 687050431 5.240000e-65 259.0
29 TraesCS6D01G245300 chr2A 90.506 158 15 0 1254 1411 687049230 687049387 5.360000e-50 209.0
30 TraesCS6D01G245300 chr2B 91.099 191 16 1 1919 2109 653017812 653018001 1.890000e-64 257.0
31 TraesCS6D01G245300 chr2B 89.412 170 18 0 1242 1411 653016778 653016947 1.150000e-51 215.0
32 TraesCS6D01G245300 chr4A 90.604 149 11 3 1941 2087 705512242 705512095 1.500000e-45 195.0
33 TraesCS6D01G245300 chr7A 89.262 149 13 3 1941 2087 22939736 22939589 3.250000e-42 183.0
34 TraesCS6D01G245300 chr3D 95.556 90 4 0 5188 5277 431339166 431339077 1.530000e-30 145.0
35 TraesCS6D01G245300 chr7B 93.684 95 5 1 5185 5278 568098437 568098343 1.980000e-29 141.0
36 TraesCS6D01G245300 chr1B 84.328 134 21 0 1274 1407 146428112 146427979 1.190000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G245300 chr6D 347432395 347437672 5277 False 9747.0 9747 100.00000 1 5278 1 chr6D.!!$F2 5277
1 TraesCS6D01G245300 chr6B 532899343 532904169 4826 True 1516.5 3496 89.62175 351 5188 4 chr6B.!!$R1 4837
2 TraesCS6D01G245300 chr6A 496009807 496017734 7927 True 1317.7 1932 90.13775 351 5188 4 chr6A.!!$R2 4837
3 TraesCS6D01G245300 chr2A 687049230 687050431 1201 False 234.0 259 90.61400 1254 2112 2 chr2A.!!$F1 858
4 TraesCS6D01G245300 chr2B 653016778 653018001 1223 False 236.0 257 90.25550 1242 2109 2 chr2B.!!$F1 867

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
543 564 0.031585 GCATTGCATCGCATCCACAT 59.968 50.0 3.15 0.0 38.76 3.21 F
1197 1276 0.036022 TCCATGGATGTTCGTGTGCA 59.964 50.0 11.44 0.0 0.00 4.57 F
2487 3126 0.109781 CTGCGTCCCATTTTGTTCGG 60.110 55.0 0.00 0.0 0.00 4.30 F
3914 7783 0.036306 AAACGACCTCATTCCCGCTT 59.964 50.0 0.00 0.0 0.00 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1772 1936 0.104120 AAACAAAAGGAACTGGCGGC 59.896 50.0 0.0 0.0 40.86 6.53 R
2693 3381 0.102120 CGCCAAAGCCAAGTGAACAA 59.898 50.0 0.0 0.0 34.57 2.83 R
3972 7841 0.101759 CTGTTGCTGCTGCTGTTGTT 59.898 50.0 17.0 0.0 40.48 2.83 R
5241 9179 0.250234 CATCTCCTCAAACCGGCTCA 59.750 55.0 0.0 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.686437 TAGGGTGGGGGTGGGGTG 62.686 72.222 0.00 0.00 0.00 4.61
25 26 2.859971 GGGTGGGGTGGGTGGTTA 60.860 66.667 0.00 0.00 0.00 2.85
26 27 2.761160 GGTGGGGTGGGTGGTTAG 59.239 66.667 0.00 0.00 0.00 2.34
27 28 2.035155 GTGGGGTGGGTGGTTAGC 59.965 66.667 0.00 0.00 0.00 3.09
28 29 2.121689 TGGGGTGGGTGGTTAGCT 60.122 61.111 0.00 0.00 0.00 3.32
29 30 2.355115 GGGGTGGGTGGTTAGCTG 59.645 66.667 0.00 0.00 0.00 4.24
30 31 2.535331 GGGGTGGGTGGTTAGCTGT 61.535 63.158 0.00 0.00 0.00 4.40
31 32 1.303317 GGGTGGGTGGTTAGCTGTG 60.303 63.158 0.00 0.00 0.00 3.66
32 33 1.303317 GGTGGGTGGTTAGCTGTGG 60.303 63.158 0.00 0.00 0.00 4.17
33 34 1.303317 GTGGGTGGTTAGCTGTGGG 60.303 63.158 0.00 0.00 0.00 4.61
34 35 1.462432 TGGGTGGTTAGCTGTGGGA 60.462 57.895 0.00 0.00 0.00 4.37
35 36 1.063070 TGGGTGGTTAGCTGTGGGAA 61.063 55.000 0.00 0.00 0.00 3.97
36 37 0.111639 GGGTGGTTAGCTGTGGGAAA 59.888 55.000 0.00 0.00 0.00 3.13
37 38 1.534729 GGTGGTTAGCTGTGGGAAAG 58.465 55.000 0.00 0.00 0.00 2.62
38 39 1.534729 GTGGTTAGCTGTGGGAAAGG 58.465 55.000 0.00 0.00 0.00 3.11
39 40 0.251165 TGGTTAGCTGTGGGAAAGGC 60.251 55.000 0.00 0.00 0.00 4.35
40 41 1.305930 GGTTAGCTGTGGGAAAGGCG 61.306 60.000 0.00 0.00 0.00 5.52
41 42 1.674322 TTAGCTGTGGGAAAGGCGC 60.674 57.895 0.00 0.00 0.00 6.53
42 43 2.124507 TTAGCTGTGGGAAAGGCGCT 62.125 55.000 7.64 0.00 0.00 5.92
43 44 1.261938 TAGCTGTGGGAAAGGCGCTA 61.262 55.000 7.64 0.00 0.00 4.26
44 45 2.109126 GCTGTGGGAAAGGCGCTAG 61.109 63.158 7.64 0.00 0.00 3.42
45 46 1.450312 CTGTGGGAAAGGCGCTAGG 60.450 63.158 7.64 0.00 0.00 3.02
46 47 2.124695 GTGGGAAAGGCGCTAGGG 60.125 66.667 7.64 1.65 0.00 3.53
47 48 2.285069 TGGGAAAGGCGCTAGGGA 60.285 61.111 11.61 0.00 0.00 4.20
48 49 1.692749 TGGGAAAGGCGCTAGGGAT 60.693 57.895 11.61 0.00 0.00 3.85
49 50 1.279025 TGGGAAAGGCGCTAGGGATT 61.279 55.000 11.61 1.37 0.00 3.01
50 51 0.106669 GGGAAAGGCGCTAGGGATTT 60.107 55.000 11.61 10.22 0.00 2.17
51 52 1.025041 GGAAAGGCGCTAGGGATTTG 58.975 55.000 11.61 0.00 0.00 2.32
52 53 0.382158 GAAAGGCGCTAGGGATTTGC 59.618 55.000 11.61 0.00 0.00 3.68
53 54 0.034089 AAAGGCGCTAGGGATTTGCT 60.034 50.000 11.61 0.00 0.00 3.91
54 55 0.464554 AAGGCGCTAGGGATTTGCTC 60.465 55.000 11.61 0.00 0.00 4.26
55 56 1.147153 GGCGCTAGGGATTTGCTCT 59.853 57.895 11.61 0.00 0.00 4.09
56 57 1.162800 GGCGCTAGGGATTTGCTCTG 61.163 60.000 11.61 0.00 0.00 3.35
57 58 1.162800 GCGCTAGGGATTTGCTCTGG 61.163 60.000 11.61 0.00 0.00 3.86
58 59 0.179000 CGCTAGGGATTTGCTCTGGT 59.821 55.000 0.00 0.00 0.00 4.00
59 60 1.407437 CGCTAGGGATTTGCTCTGGTT 60.407 52.381 0.00 0.00 0.00 3.67
60 61 2.019984 GCTAGGGATTTGCTCTGGTTG 58.980 52.381 0.00 0.00 0.00 3.77
61 62 2.019984 CTAGGGATTTGCTCTGGTTGC 58.980 52.381 0.00 0.00 0.00 4.17
62 63 0.613012 AGGGATTTGCTCTGGTTGCC 60.613 55.000 0.00 0.00 0.00 4.52
63 64 0.899717 GGGATTTGCTCTGGTTGCCA 60.900 55.000 0.00 0.00 0.00 4.92
64 65 1.188863 GGATTTGCTCTGGTTGCCAT 58.811 50.000 0.00 0.00 30.82 4.40
65 66 1.134907 GGATTTGCTCTGGTTGCCATG 60.135 52.381 0.00 0.00 30.82 3.66
66 67 0.899720 ATTTGCTCTGGTTGCCATGG 59.100 50.000 7.63 7.63 30.82 3.66
67 68 1.818959 TTTGCTCTGGTTGCCATGGC 61.819 55.000 30.54 30.54 42.35 4.40
77 78 4.421365 GCCATGGCAACCAGAGAA 57.579 55.556 32.08 0.00 36.75 2.87
78 79 2.187073 GCCATGGCAACCAGAGAAG 58.813 57.895 32.08 0.00 36.75 2.85
79 80 1.318158 GCCATGGCAACCAGAGAAGG 61.318 60.000 32.08 0.00 36.75 3.46
80 81 0.329261 CCATGGCAACCAGAGAAGGA 59.671 55.000 0.00 0.00 36.75 3.36
81 82 1.272092 CCATGGCAACCAGAGAAGGAA 60.272 52.381 0.00 0.00 36.75 3.36
82 83 2.089980 CATGGCAACCAGAGAAGGAAG 58.910 52.381 0.00 0.00 36.75 3.46
83 84 0.401738 TGGCAACCAGAGAAGGAAGG 59.598 55.000 0.00 0.00 0.00 3.46
84 85 0.962855 GGCAACCAGAGAAGGAAGGC 60.963 60.000 0.00 0.00 0.00 4.35
85 86 1.301677 GCAACCAGAGAAGGAAGGCG 61.302 60.000 0.00 0.00 0.00 5.52
86 87 0.321671 CAACCAGAGAAGGAAGGCGA 59.678 55.000 0.00 0.00 0.00 5.54
87 88 0.321996 AACCAGAGAAGGAAGGCGAC 59.678 55.000 0.00 0.00 0.00 5.19
88 89 1.153745 CCAGAGAAGGAAGGCGACG 60.154 63.158 0.00 0.00 0.00 5.12
89 90 1.153745 CAGAGAAGGAAGGCGACGG 60.154 63.158 0.00 0.00 0.00 4.79
90 91 1.304217 AGAGAAGGAAGGCGACGGA 60.304 57.895 0.00 0.00 0.00 4.69
91 92 1.139947 GAGAAGGAAGGCGACGGAG 59.860 63.158 0.00 0.00 0.00 4.63
92 93 2.184579 GAAGGAAGGCGACGGAGG 59.815 66.667 0.00 0.00 0.00 4.30
93 94 2.603776 AAGGAAGGCGACGGAGGT 60.604 61.111 0.00 0.00 0.00 3.85
94 95 1.304713 AAGGAAGGCGACGGAGGTA 60.305 57.895 0.00 0.00 0.00 3.08
95 96 1.321074 AAGGAAGGCGACGGAGGTAG 61.321 60.000 0.00 0.00 0.00 3.18
96 97 2.783288 GGAAGGCGACGGAGGTAGG 61.783 68.421 0.00 0.00 0.00 3.18
97 98 2.758737 AAGGCGACGGAGGTAGGG 60.759 66.667 0.00 0.00 0.00 3.53
98 99 4.835891 AGGCGACGGAGGTAGGGG 62.836 72.222 0.00 0.00 0.00 4.79
99 100 4.828296 GGCGACGGAGGTAGGGGA 62.828 72.222 0.00 0.00 0.00 4.81
100 101 2.521224 GCGACGGAGGTAGGGGAT 60.521 66.667 0.00 0.00 0.00 3.85
101 102 2.562876 GCGACGGAGGTAGGGGATC 61.563 68.421 0.00 0.00 0.00 3.36
102 103 2.259439 CGACGGAGGTAGGGGATCG 61.259 68.421 0.00 0.00 0.00 3.69
103 104 1.902432 GACGGAGGTAGGGGATCGG 60.902 68.421 0.00 0.00 0.00 4.18
104 105 2.600769 CGGAGGTAGGGGATCGGG 60.601 72.222 0.00 0.00 0.00 5.14
105 106 2.940951 GGAGGTAGGGGATCGGGA 59.059 66.667 0.00 0.00 0.00 5.14
106 107 1.228925 GGAGGTAGGGGATCGGGAG 60.229 68.421 0.00 0.00 0.00 4.30
107 108 1.727215 GGAGGTAGGGGATCGGGAGA 61.727 65.000 0.00 0.00 46.90 3.71
117 118 4.012138 TCGGGAGATGCGAGACAA 57.988 55.556 0.00 0.00 0.00 3.18
118 119 2.504920 TCGGGAGATGCGAGACAAT 58.495 52.632 0.00 0.00 0.00 2.71
119 120 0.103026 TCGGGAGATGCGAGACAATG 59.897 55.000 0.00 0.00 0.00 2.82
120 121 0.877649 CGGGAGATGCGAGACAATGG 60.878 60.000 0.00 0.00 0.00 3.16
121 122 1.162800 GGGAGATGCGAGACAATGGC 61.163 60.000 0.00 0.00 0.00 4.40
122 123 1.493950 GGAGATGCGAGACAATGGCG 61.494 60.000 0.00 0.00 34.93 5.69
123 124 1.493950 GAGATGCGAGACAATGGCGG 61.494 60.000 0.00 0.00 34.93 6.13
124 125 3.173390 GATGCGAGACAATGGCGGC 62.173 63.158 0.00 0.00 34.93 6.53
125 126 3.974835 ATGCGAGACAATGGCGGCA 62.975 57.895 16.34 16.34 34.93 5.69
126 127 3.869272 GCGAGACAATGGCGGCAG 61.869 66.667 19.29 7.31 0.00 4.85
127 128 3.197790 CGAGACAATGGCGGCAGG 61.198 66.667 19.29 14.73 0.00 4.85
128 129 2.825836 GAGACAATGGCGGCAGGG 60.826 66.667 19.29 14.35 0.00 4.45
154 155 3.930012 GGATCGGAAGGAGCCCGG 61.930 72.222 0.00 0.00 45.78 5.73
155 156 3.930012 GATCGGAAGGAGCCCGGG 61.930 72.222 19.09 19.09 46.47 5.73
156 157 4.475444 ATCGGAAGGAGCCCGGGA 62.475 66.667 29.31 0.00 46.47 5.14
159 160 3.787001 GGAAGGAGCCCGGGACAG 61.787 72.222 29.31 0.00 0.00 3.51
160 161 4.475135 GAAGGAGCCCGGGACAGC 62.475 72.222 29.31 8.88 0.00 4.40
175 176 4.731612 AGCTGGCGTGCTGAGTCG 62.732 66.667 4.02 0.00 42.33 4.18
177 178 3.108289 CTGGCGTGCTGAGTCGTG 61.108 66.667 0.00 0.00 0.00 4.35
206 207 4.974989 GTCGTTTGGCCCGGACGT 62.975 66.667 18.26 0.00 37.95 4.34
207 208 4.973055 TCGTTTGGCCCGGACGTG 62.973 66.667 18.26 0.00 37.95 4.49
209 210 3.656045 GTTTGGCCCGGACGTGTG 61.656 66.667 0.73 0.00 0.00 3.82
210 211 4.939368 TTTGGCCCGGACGTGTGG 62.939 66.667 0.73 0.00 0.00 4.17
218 219 2.903350 GGACGTGTGGGCGGTTTT 60.903 61.111 0.00 0.00 35.98 2.43
219 220 2.330041 GACGTGTGGGCGGTTTTG 59.670 61.111 0.00 0.00 35.98 2.44
220 221 3.817274 GACGTGTGGGCGGTTTTGC 62.817 63.158 0.00 0.00 35.98 3.68
228 229 2.279186 GCGGTTTTGCCACACACC 60.279 61.111 0.00 0.00 36.97 4.16
229 230 2.025441 CGGTTTTGCCACACACCG 59.975 61.111 3.79 3.79 45.75 4.94
230 231 2.415426 GGTTTTGCCACACACCGG 59.585 61.111 0.00 0.00 37.17 5.28
231 232 2.122167 GGTTTTGCCACACACCGGA 61.122 57.895 9.46 0.00 37.17 5.14
232 233 1.065109 GTTTTGCCACACACCGGAC 59.935 57.895 9.46 0.00 0.00 4.79
233 234 2.473760 TTTTGCCACACACCGGACG 61.474 57.895 9.46 0.00 0.00 4.79
234 235 3.683966 TTTGCCACACACCGGACGT 62.684 57.895 9.46 0.78 0.00 4.34
271 272 4.794439 GCCCGGATGCGGTTTTGC 62.794 66.667 24.84 16.42 0.00 3.68
272 273 4.474846 CCCGGATGCGGTTTTGCG 62.475 66.667 24.84 3.77 37.81 4.85
273 274 4.474846 CCGGATGCGGTTTTGCGG 62.475 66.667 18.74 0.00 40.46 5.69
274 275 4.474846 CGGATGCGGTTTTGCGGG 62.475 66.667 0.00 0.00 37.81 6.13
275 276 4.794439 GGATGCGGTTTTGCGGGC 62.794 66.667 0.00 0.00 37.81 6.13
280 281 3.656045 CGGTTTTGCGGGCGAGTT 61.656 61.111 0.00 0.00 0.00 3.01
281 282 2.254350 GGTTTTGCGGGCGAGTTC 59.746 61.111 0.00 0.00 0.00 3.01
282 283 2.258726 GGTTTTGCGGGCGAGTTCT 61.259 57.895 0.00 0.00 0.00 3.01
283 284 1.652563 GTTTTGCGGGCGAGTTCTT 59.347 52.632 0.00 0.00 0.00 2.52
284 285 0.385598 GTTTTGCGGGCGAGTTCTTC 60.386 55.000 0.00 0.00 0.00 2.87
285 286 0.534203 TTTTGCGGGCGAGTTCTTCT 60.534 50.000 0.00 0.00 0.00 2.85
286 287 0.949105 TTTGCGGGCGAGTTCTTCTC 60.949 55.000 0.00 0.00 39.62 2.87
287 288 2.509561 GCGGGCGAGTTCTTCTCC 60.510 66.667 0.00 0.00 39.84 3.71
288 289 2.970639 CGGGCGAGTTCTTCTCCA 59.029 61.111 0.00 0.00 39.84 3.86
289 290 1.517832 CGGGCGAGTTCTTCTCCAT 59.482 57.895 0.00 0.00 39.84 3.41
290 291 0.807667 CGGGCGAGTTCTTCTCCATG 60.808 60.000 0.00 0.00 39.84 3.66
291 292 1.092345 GGGCGAGTTCTTCTCCATGC 61.092 60.000 0.00 0.00 39.84 4.06
292 293 1.092345 GGCGAGTTCTTCTCCATGCC 61.092 60.000 0.00 0.00 38.99 4.40
293 294 0.391661 GCGAGTTCTTCTCCATGCCA 60.392 55.000 0.00 0.00 39.84 4.92
294 295 1.363744 CGAGTTCTTCTCCATGCCAC 58.636 55.000 0.00 0.00 39.84 5.01
295 296 1.338105 CGAGTTCTTCTCCATGCCACA 60.338 52.381 0.00 0.00 39.84 4.17
296 297 2.079925 GAGTTCTTCTCCATGCCACAC 58.920 52.381 0.00 0.00 37.22 3.82
297 298 0.798776 GTTCTTCTCCATGCCACACG 59.201 55.000 0.00 0.00 0.00 4.49
298 299 0.684535 TTCTTCTCCATGCCACACGA 59.315 50.000 0.00 0.00 0.00 4.35
299 300 0.247460 TCTTCTCCATGCCACACGAG 59.753 55.000 0.00 0.00 0.00 4.18
300 301 0.742281 CTTCTCCATGCCACACGAGG 60.742 60.000 0.00 0.00 0.00 4.63
322 323 2.266372 CGGCACAACCACCCGATA 59.734 61.111 0.00 0.00 44.55 2.92
323 324 2.104253 CGGCACAACCACCCGATAC 61.104 63.158 0.00 0.00 44.55 2.24
324 325 1.003112 GGCACAACCACCCGATACA 60.003 57.895 0.00 0.00 38.86 2.29
325 326 1.303091 GGCACAACCACCCGATACAC 61.303 60.000 0.00 0.00 38.86 2.90
326 327 1.303091 GCACAACCACCCGATACACC 61.303 60.000 0.00 0.00 0.00 4.16
327 328 0.035598 CACAACCACCCGATACACCA 59.964 55.000 0.00 0.00 0.00 4.17
328 329 0.035739 ACAACCACCCGATACACCAC 59.964 55.000 0.00 0.00 0.00 4.16
329 330 0.035598 CAACCACCCGATACACCACA 59.964 55.000 0.00 0.00 0.00 4.17
330 331 0.035739 AACCACCCGATACACCACAC 59.964 55.000 0.00 0.00 0.00 3.82
331 332 1.447140 CCACCCGATACACCACACG 60.447 63.158 0.00 0.00 0.00 4.49
332 333 1.290955 CACCCGATACACCACACGT 59.709 57.895 0.00 0.00 0.00 4.49
345 346 0.438445 CACACGTGTGGCAGTTATCG 59.562 55.000 35.65 10.61 42.10 2.92
346 347 0.669318 ACACGTGTGGCAGTTATCGG 60.669 55.000 22.71 0.00 34.19 4.18
347 348 0.669318 CACGTGTGGCAGTTATCGGT 60.669 55.000 7.58 0.00 0.00 4.69
348 349 0.669318 ACGTGTGGCAGTTATCGGTG 60.669 55.000 0.00 0.00 0.00 4.94
349 350 0.669318 CGTGTGGCAGTTATCGGTGT 60.669 55.000 0.00 0.00 0.00 4.16
463 464 1.669115 CAGACAGACGCACCCCAAG 60.669 63.158 0.00 0.00 0.00 3.61
464 465 3.050275 GACAGACGCACCCCAAGC 61.050 66.667 0.00 0.00 0.00 4.01
465 466 4.643387 ACAGACGCACCCCAAGCC 62.643 66.667 0.00 0.00 0.00 4.35
528 549 2.819595 CGCTACAGTGCCCGCATT 60.820 61.111 0.00 0.00 0.00 3.56
541 562 1.656263 CGCATTGCATCGCATCCAC 60.656 57.895 9.69 0.00 38.76 4.02
542 563 1.434287 GCATTGCATCGCATCCACA 59.566 52.632 3.15 0.00 38.76 4.17
543 564 0.031585 GCATTGCATCGCATCCACAT 59.968 50.000 3.15 0.00 38.76 3.21
544 565 1.929038 GCATTGCATCGCATCCACATC 60.929 52.381 3.15 0.00 38.76 3.06
545 566 0.956633 ATTGCATCGCATCCACATCC 59.043 50.000 0.00 0.00 38.76 3.51
546 567 0.394080 TTGCATCGCATCCACATCCA 60.394 50.000 0.00 0.00 38.76 3.41
547 568 0.179012 TGCATCGCATCCACATCCAT 60.179 50.000 0.00 0.00 31.71 3.41
548 569 1.072015 TGCATCGCATCCACATCCATA 59.928 47.619 0.00 0.00 31.71 2.74
549 570 2.290450 TGCATCGCATCCACATCCATAT 60.290 45.455 0.00 0.00 31.71 1.78
550 571 2.096980 GCATCGCATCCACATCCATATG 59.903 50.000 0.00 0.00 39.17 1.78
551 572 3.602483 CATCGCATCCACATCCATATGA 58.398 45.455 3.65 0.00 36.54 2.15
552 573 3.044235 TCGCATCCACATCCATATGAC 57.956 47.619 3.65 0.00 36.54 3.06
553 574 2.079158 CGCATCCACATCCATATGACC 58.921 52.381 3.65 0.00 36.54 4.02
554 575 2.550639 CGCATCCACATCCATATGACCA 60.551 50.000 3.65 0.00 36.54 4.02
579 600 2.359900 CATTCCTCCCCACGAGAAAAG 58.640 52.381 0.00 0.00 41.63 2.27
589 610 2.165437 CCACGAGAAAAGGAGAGAGAGG 59.835 54.545 0.00 0.00 0.00 3.69
616 637 2.537639 TACTAGTCGTCGTCGTCGTA 57.462 50.000 11.41 0.00 38.33 3.43
619 640 2.159558 ACTAGTCGTCGTCGTCGTAGTA 60.160 50.000 11.41 5.58 38.33 1.82
831 863 1.895231 GCCGGTAATAAAGGCGGGG 60.895 63.158 1.90 0.00 41.53 5.73
1109 1188 2.356780 CCCCCTTCTCCGCGTAAGT 61.357 63.158 4.92 0.00 41.68 2.24
1118 1197 1.611977 CTCCGCGTAAGTATCCATCCA 59.388 52.381 4.92 0.00 41.68 3.41
1125 1204 3.323691 CGTAAGTATCCATCCATCCACCA 59.676 47.826 0.00 0.00 0.00 4.17
1148 1227 0.390472 GGTTCTTGGCTCCTCACTCG 60.390 60.000 0.00 0.00 0.00 4.18
1165 1244 2.545946 ACTCGTCTTCTTTCTTGCTTGC 59.454 45.455 0.00 0.00 0.00 4.01
1191 1270 0.726827 CGTGGTTCCATGGATGTTCG 59.273 55.000 17.06 14.35 0.00 3.95
1197 1276 0.036022 TCCATGGATGTTCGTGTGCA 59.964 50.000 11.44 0.00 0.00 4.57
1198 1277 0.448990 CCATGGATGTTCGTGTGCAG 59.551 55.000 5.56 0.00 0.00 4.41
1199 1278 0.179181 CATGGATGTTCGTGTGCAGC 60.179 55.000 0.00 0.00 0.00 5.25
1200 1279 1.638388 ATGGATGTTCGTGTGCAGCG 61.638 55.000 4.41 4.41 0.00 5.18
1665 1815 7.417911 CCAGTGCTACTCTATCTTCATGGTTTA 60.418 40.741 0.00 0.00 0.00 2.01
1675 1825 9.547279 TCTATCTTCATGGTTTATATCAGGCTA 57.453 33.333 0.00 0.00 0.00 3.93
1748 1912 2.747822 GCAGCGTGCTCATGTCCAG 61.748 63.158 0.00 0.00 40.96 3.86
1756 1920 1.367659 GCTCATGTCCAGAACAGAGC 58.632 55.000 11.20 11.20 44.35 4.09
1770 1934 3.018423 ACAGAGCCTCCTTGTTTGTTT 57.982 42.857 0.00 0.00 0.00 2.83
1771 1935 3.365472 ACAGAGCCTCCTTGTTTGTTTT 58.635 40.909 0.00 0.00 0.00 2.43
1772 1936 3.131046 ACAGAGCCTCCTTGTTTGTTTTG 59.869 43.478 0.00 0.00 0.00 2.44
1773 1937 2.101415 AGAGCCTCCTTGTTTGTTTTGC 59.899 45.455 0.00 0.00 0.00 3.68
1774 1938 1.138859 AGCCTCCTTGTTTGTTTTGCC 59.861 47.619 0.00 0.00 0.00 4.52
1797 1988 4.676723 CGCCAGTTCCTTTTGTTTTTCTCA 60.677 41.667 0.00 0.00 0.00 3.27
1819 2010 4.807304 CAGTTGGATTAATGCTGCAAATCC 59.193 41.667 27.60 27.60 45.90 3.01
1863 2082 2.177173 GCTCGCCATTGTTTTTCGATC 58.823 47.619 0.00 0.00 0.00 3.69
1900 2303 2.299993 TCACCTTGCATCTGATCGAC 57.700 50.000 0.00 0.00 0.00 4.20
2280 2919 2.360726 TCAGCAGCACATGGGCAG 60.361 61.111 24.51 16.48 35.83 4.85
2344 2983 4.217118 ACATGCAAAGATTTCAGGTGAGTC 59.783 41.667 0.00 0.00 0.00 3.36
2380 3019 3.181457 ACATCTCTCCATGCCATACAGTG 60.181 47.826 0.00 0.00 0.00 3.66
2381 3020 2.470990 TCTCTCCATGCCATACAGTGT 58.529 47.619 0.00 0.00 0.00 3.55
2445 3084 1.471684 GAAGACAGCCAAGCCAAGATG 59.528 52.381 0.00 0.00 0.00 2.90
2486 3125 0.871722 TCTGCGTCCCATTTTGTTCG 59.128 50.000 0.00 0.00 0.00 3.95
2487 3126 0.109781 CTGCGTCCCATTTTGTTCGG 60.110 55.000 0.00 0.00 0.00 4.30
2500 3161 0.950555 TGTTCGGATGCACAGTGCTC 60.951 55.000 25.83 18.90 45.31 4.26
2501 3162 0.671781 GTTCGGATGCACAGTGCTCT 60.672 55.000 25.83 13.51 45.31 4.09
2502 3163 0.671472 TTCGGATGCACAGTGCTCTG 60.671 55.000 25.83 22.28 45.31 3.35
2504 3165 2.404995 GGATGCACAGTGCTCTGCC 61.405 63.158 25.83 16.71 45.31 4.85
2506 3167 3.541950 ATGCACAGTGCTCTGCCGT 62.542 57.895 25.83 5.91 45.31 5.68
2530 3191 0.583438 ACACTCGCGATATGCATTGC 59.417 50.000 10.36 6.34 46.97 3.56
2587 3254 3.163630 ACACATTTTCTGCTGCGTTTT 57.836 38.095 0.00 0.00 0.00 2.43
2606 3285 5.335191 CGTTTTGCCTTTAGATCTGCTTTCT 60.335 40.000 5.18 0.00 0.00 2.52
2632 3320 7.092264 TGGGATCAGATTTTAGATTGAGAACCT 60.092 37.037 0.00 0.00 0.00 3.50
2664 3352 3.718723 GGCCCCTATGATAGATCTCTGT 58.281 50.000 0.00 0.00 0.00 3.41
2675 3363 5.362143 TGATAGATCTCTGTTCAGGTGGAAG 59.638 44.000 0.00 0.00 35.82 3.46
2699 3387 2.124529 TGCGGTGCAGGTTGTTCA 60.125 55.556 0.00 0.00 33.32 3.18
2736 3424 4.510340 CAGGCTAAGTTTCAAACACGTACT 59.490 41.667 2.41 0.00 0.00 2.73
2737 3425 4.510340 AGGCTAAGTTTCAAACACGTACTG 59.490 41.667 2.41 0.00 0.00 2.74
2739 3427 5.429615 GCTAAGTTTCAAACACGTACTGTC 58.570 41.667 2.41 0.00 30.29 3.51
2740 3428 4.870221 AAGTTTCAAACACGTACTGTCC 57.130 40.909 2.41 0.00 30.29 4.02
2741 3429 3.864243 AGTTTCAAACACGTACTGTCCA 58.136 40.909 2.41 0.00 30.29 4.02
2742 3430 4.448210 AGTTTCAAACACGTACTGTCCAT 58.552 39.130 2.41 0.00 30.29 3.41
2743 3431 4.272504 AGTTTCAAACACGTACTGTCCATG 59.727 41.667 2.41 0.00 30.29 3.66
2744 3432 3.737032 TCAAACACGTACTGTCCATGA 57.263 42.857 0.00 0.00 30.29 3.07
2745 3433 4.265904 TCAAACACGTACTGTCCATGAT 57.734 40.909 0.00 0.00 30.29 2.45
2801 3489 1.579084 GGTCTGTCGTCGCAGAGTCT 61.579 60.000 16.29 0.00 45.03 3.24
2802 3490 0.179210 GTCTGTCGTCGCAGAGTCTC 60.179 60.000 16.29 0.00 45.03 3.36
2803 3491 1.225881 CTGTCGTCGCAGAGTCTCG 60.226 63.158 10.06 0.00 36.95 4.04
2804 3492 2.574736 GTCGTCGCAGAGTCTCGC 60.575 66.667 0.00 6.61 36.95 5.03
2805 3493 3.047877 TCGTCGCAGAGTCTCGCA 61.048 61.111 14.23 2.76 36.95 5.10
2806 3494 2.575525 CGTCGCAGAGTCTCGCAG 60.576 66.667 14.23 8.72 36.95 5.18
2807 3495 2.563942 GTCGCAGAGTCTCGCAGT 59.436 61.111 14.23 0.00 36.95 4.40
2808 3496 1.799519 GTCGCAGAGTCTCGCAGTG 60.800 63.158 14.23 7.16 36.95 3.66
2809 3497 3.177920 CGCAGAGTCTCGCAGTGC 61.178 66.667 4.58 4.58 0.00 4.40
2810 3498 2.261052 GCAGAGTCTCGCAGTGCT 59.739 61.111 14.33 0.00 0.00 4.40
2811 3499 1.373999 GCAGAGTCTCGCAGTGCTT 60.374 57.895 14.33 0.00 0.00 3.91
2812 3500 1.624865 GCAGAGTCTCGCAGTGCTTG 61.625 60.000 14.33 5.72 0.00 4.01
2813 3501 0.319383 CAGAGTCTCGCAGTGCTTGT 60.319 55.000 14.33 0.00 0.00 3.16
2814 3502 1.068264 CAGAGTCTCGCAGTGCTTGTA 60.068 52.381 14.33 0.00 0.00 2.41
2815 3503 1.201181 AGAGTCTCGCAGTGCTTGTAG 59.799 52.381 14.33 5.50 0.00 2.74
2816 3504 0.962489 AGTCTCGCAGTGCTTGTAGT 59.038 50.000 14.33 0.00 0.00 2.73
2817 3505 1.063806 GTCTCGCAGTGCTTGTAGTG 58.936 55.000 14.33 0.00 0.00 2.74
2818 3506 0.667487 TCTCGCAGTGCTTGTAGTGC 60.667 55.000 14.33 8.18 42.27 4.40
2819 3507 1.630244 CTCGCAGTGCTTGTAGTGCC 61.630 60.000 14.33 0.00 42.63 5.01
2820 3508 1.669115 CGCAGTGCTTGTAGTGCCT 60.669 57.895 14.33 0.00 42.63 4.75
2821 3509 1.871772 GCAGTGCTTGTAGTGCCTG 59.128 57.895 8.18 0.00 40.34 4.85
2822 3510 1.580845 GCAGTGCTTGTAGTGCCTGG 61.581 60.000 8.18 0.00 40.34 4.45
2823 3511 1.302832 AGTGCTTGTAGTGCCTGGC 60.303 57.895 12.87 12.87 0.00 4.85
2824 3512 2.034066 TGCTTGTAGTGCCTGGCC 59.966 61.111 17.53 7.66 0.00 5.36
2825 3513 2.352805 GCTTGTAGTGCCTGGCCT 59.647 61.111 17.53 14.91 0.00 5.19
2826 3514 1.746991 GCTTGTAGTGCCTGGCCTC 60.747 63.158 17.53 9.52 0.00 4.70
2841 3529 2.729028 GCCTCCCTTGCCATTTAGTA 57.271 50.000 0.00 0.00 0.00 1.82
2842 3530 2.298610 GCCTCCCTTGCCATTTAGTAC 58.701 52.381 0.00 0.00 0.00 2.73
2843 3531 2.356741 GCCTCCCTTGCCATTTAGTACA 60.357 50.000 0.00 0.00 0.00 2.90
2997 3689 2.460669 GAAGCCCCACCATTTTCATCT 58.539 47.619 0.00 0.00 0.00 2.90
3052 3744 3.250762 TGCAACTGTACAACTGCTTGATC 59.749 43.478 22.57 0.00 35.78 2.92
3060 3752 6.521162 TGTACAACTGCTTGATCTAACTTCA 58.479 36.000 0.00 0.00 0.00 3.02
3069 3761 6.203530 TGCTTGATCTAACTTCAGTGAACTTG 59.796 38.462 0.08 0.00 0.00 3.16
3145 3838 5.758296 CACTCTTTCCTGCTTAGTTGTGTTA 59.242 40.000 0.00 0.00 0.00 2.41
3161 3854 6.992715 AGTTGTGTTAGTTCAGTTTAGCATCT 59.007 34.615 0.00 0.00 0.00 2.90
3162 3855 7.171678 AGTTGTGTTAGTTCAGTTTAGCATCTC 59.828 37.037 0.00 0.00 0.00 2.75
3163 3856 6.521162 TGTGTTAGTTCAGTTTAGCATCTCA 58.479 36.000 0.00 0.00 0.00 3.27
3164 3857 6.989759 TGTGTTAGTTCAGTTTAGCATCTCAA 59.010 34.615 0.00 0.00 0.00 3.02
3165 3858 7.497579 TGTGTTAGTTCAGTTTAGCATCTCAAA 59.502 33.333 0.00 0.00 0.00 2.69
3166 3859 8.507249 GTGTTAGTTCAGTTTAGCATCTCAAAT 58.493 33.333 0.00 0.00 0.00 2.32
3167 3860 8.721478 TGTTAGTTCAGTTTAGCATCTCAAATC 58.279 33.333 0.00 0.00 0.00 2.17
3168 3861 6.749923 AGTTCAGTTTAGCATCTCAAATCC 57.250 37.500 0.00 0.00 0.00 3.01
3169 3862 6.479884 AGTTCAGTTTAGCATCTCAAATCCT 58.520 36.000 0.00 0.00 0.00 3.24
3170 3863 6.944862 AGTTCAGTTTAGCATCTCAAATCCTT 59.055 34.615 0.00 0.00 0.00 3.36
3171 3864 7.449704 AGTTCAGTTTAGCATCTCAAATCCTTT 59.550 33.333 0.00 0.00 0.00 3.11
3172 3865 7.765695 TCAGTTTAGCATCTCAAATCCTTTT 57.234 32.000 0.00 0.00 0.00 2.27
3173 3866 7.820648 TCAGTTTAGCATCTCAAATCCTTTTC 58.179 34.615 0.00 0.00 0.00 2.29
3174 3867 7.667219 TCAGTTTAGCATCTCAAATCCTTTTCT 59.333 33.333 0.00 0.00 0.00 2.52
3175 3868 8.950210 CAGTTTAGCATCTCAAATCCTTTTCTA 58.050 33.333 0.00 0.00 0.00 2.10
3176 3869 9.520515 AGTTTAGCATCTCAAATCCTTTTCTAA 57.479 29.630 0.00 0.00 0.00 2.10
3222 3915 1.244019 GGCCACCTCTGTTGCGATTT 61.244 55.000 0.00 0.00 34.06 2.17
3244 3937 4.637483 TTTTGCTTTCTTCTGTCACCAG 57.363 40.909 0.00 0.00 40.25 4.00
3257 3950 6.048732 TCTGTCACCAGCTGTTATATTTGA 57.951 37.500 13.81 0.66 38.66 2.69
3316 4009 6.422701 AGCAATGCTATTCTTACGCGTAAATA 59.577 34.615 29.58 22.99 36.99 1.40
3321 4014 8.800231 TGCTATTCTTACGCGTAAATATTACA 57.200 30.769 29.58 20.76 0.00 2.41
3332 6821 8.971321 ACGCGTAAATATTACATACCACTTTAG 58.029 33.333 11.67 0.00 0.00 1.85
3366 6855 6.517362 CGGTTATCTCCATGATTTGCTCTAGA 60.517 42.308 0.00 0.00 36.65 2.43
3367 6856 6.873076 GGTTATCTCCATGATTTGCTCTAGAG 59.127 42.308 15.85 15.85 36.65 2.43
3368 6857 7.441017 GTTATCTCCATGATTTGCTCTAGAGT 58.559 38.462 20.75 0.60 36.65 3.24
3369 6858 5.946942 TCTCCATGATTTGCTCTAGAGTT 57.053 39.130 20.75 4.20 0.00 3.01
3370 6859 7.609097 ATCTCCATGATTTGCTCTAGAGTTA 57.391 36.000 20.75 8.07 29.59 2.24
3371 6860 7.048629 TCTCCATGATTTGCTCTAGAGTTAG 57.951 40.000 20.75 0.00 0.00 2.34
3372 6861 6.609212 TCTCCATGATTTGCTCTAGAGTTAGT 59.391 38.462 20.75 6.32 0.00 2.24
3374 6863 8.306313 TCCATGATTTGCTCTAGAGTTAGTTA 57.694 34.615 20.75 5.16 0.00 2.24
3375 6864 8.198109 TCCATGATTTGCTCTAGAGTTAGTTAC 58.802 37.037 20.75 3.17 0.00 2.50
3376 6865 8.200792 CCATGATTTGCTCTAGAGTTAGTTACT 58.799 37.037 20.75 0.00 40.71 2.24
3392 6884 7.540299 GTTAGTTACTAACTCTCTCACAGCAT 58.460 38.462 23.41 0.00 41.93 3.79
3428 6924 3.753294 AAGTAGCACGGATGAATAGGG 57.247 47.619 0.00 0.00 0.00 3.53
3431 6927 2.622064 AGCACGGATGAATAGGGTTC 57.378 50.000 0.00 0.00 0.00 3.62
3482 6991 2.480224 TTAGGATTTACTCGGTCGCG 57.520 50.000 0.00 0.00 0.00 5.87
3532 7091 3.963665 TGTGCATGAGTAACTTTGCAAC 58.036 40.909 0.00 0.00 33.95 4.17
3714 7581 4.218852 ACTCGTGGAAGGACTCTTTTCTAG 59.781 45.833 0.00 0.00 32.52 2.43
3715 7582 4.150359 TCGTGGAAGGACTCTTTTCTAGT 58.850 43.478 0.00 0.00 32.52 2.57
3716 7583 5.319453 TCGTGGAAGGACTCTTTTCTAGTA 58.681 41.667 0.00 0.00 32.52 1.82
3726 7593 8.038351 AGGACTCTTTTCTAGTAATGCTTCTTC 58.962 37.037 0.00 0.00 0.00 2.87
3727 7594 7.819900 GGACTCTTTTCTAGTAATGCTTCTTCA 59.180 37.037 0.00 0.00 0.00 3.02
3748 7617 5.568482 TCAATGTTTGTACTTCATATGCGC 58.432 37.500 0.00 0.00 0.00 6.09
3782 7651 4.813296 ACTTTCGGTCTTTGACATGAAC 57.187 40.909 0.00 0.00 33.68 3.18
3914 7783 0.036306 AAACGACCTCATTCCCGCTT 59.964 50.000 0.00 0.00 0.00 4.68
3969 7838 1.318576 CCTGGGTCAGAACAACAACC 58.681 55.000 0.00 0.00 32.44 3.77
3970 7839 1.409521 CCTGGGTCAGAACAACAACCA 60.410 52.381 0.00 0.00 32.44 3.67
3971 7840 1.676006 CTGGGTCAGAACAACAACCAC 59.324 52.381 0.00 0.00 32.44 4.16
3972 7841 1.004862 TGGGTCAGAACAACAACCACA 59.995 47.619 0.00 0.00 33.27 4.17
3973 7842 2.096248 GGGTCAGAACAACAACCACAA 58.904 47.619 0.00 0.00 33.27 3.33
3974 7843 2.159296 GGGTCAGAACAACAACCACAAC 60.159 50.000 0.00 0.00 33.27 3.32
3975 7844 2.490115 GGTCAGAACAACAACCACAACA 59.510 45.455 0.00 0.00 0.00 3.33
3976 7845 3.057174 GGTCAGAACAACAACCACAACAA 60.057 43.478 0.00 0.00 0.00 2.83
4145 8026 3.324099 CTCGTGGTCGGACCTGACG 62.324 68.421 25.65 25.65 39.58 4.35
4282 8163 1.170919 GGCGAGATGTACTAGGCCGA 61.171 60.000 0.00 0.00 39.94 5.54
4299 8194 1.671379 GACAGCGTCAGTTTCCCCC 60.671 63.158 4.20 0.00 32.09 5.40
4326 8221 5.297029 TCTCCATAAGATGACAGACACTACG 59.703 44.000 0.00 0.00 0.00 3.51
4401 8301 1.098050 GGTGTGTGGATTGATCTGCC 58.902 55.000 0.00 0.00 0.00 4.85
4408 8308 3.173390 GATTGATCTGCCGGCGTGC 62.173 63.158 23.90 11.71 0.00 5.34
4431 8331 1.767692 GGTTCCTTCTTCTGGCCCA 59.232 57.895 0.00 0.00 0.00 5.36
4432 8332 0.609406 GGTTCCTTCTTCTGGCCCAC 60.609 60.000 0.00 0.00 0.00 4.61
4484 8397 6.820656 CACCTCAACCCTATATATGATTCTGC 59.179 42.308 0.00 0.00 0.00 4.26
4503 8419 7.994425 TTCTGCAATTTACCAGTATTTCTCA 57.006 32.000 0.00 0.00 0.00 3.27
4515 8431 5.504665 CCAGTATTTCTCATGTCGGATTTGC 60.505 44.000 0.00 0.00 0.00 3.68
4523 8439 3.505293 TCATGTCGGATTTGCATCAACAA 59.495 39.130 0.00 0.00 33.01 2.83
4526 8445 1.198867 TCGGATTTGCATCAACAACGG 59.801 47.619 0.00 0.00 0.00 4.44
4527 8446 1.198867 CGGATTTGCATCAACAACGGA 59.801 47.619 0.00 0.00 0.00 4.69
4535 8454 2.159627 GCATCAACAACGGATCGAAAGT 59.840 45.455 0.00 0.00 0.00 2.66
4540 8459 4.513692 TCAACAACGGATCGAAAGTTTCAT 59.486 37.500 15.67 8.07 0.00 2.57
4541 8460 5.697178 TCAACAACGGATCGAAAGTTTCATA 59.303 36.000 15.67 3.48 0.00 2.15
4542 8461 6.203145 TCAACAACGGATCGAAAGTTTCATAA 59.797 34.615 15.67 1.05 0.00 1.90
4543 8462 6.737254 ACAACGGATCGAAAGTTTCATAAT 57.263 33.333 15.67 5.75 0.00 1.28
4544 8463 6.772078 ACAACGGATCGAAAGTTTCATAATC 58.228 36.000 15.67 13.21 0.00 1.75
4545 8464 5.637104 ACGGATCGAAAGTTTCATAATCG 57.363 39.130 15.67 13.06 34.98 3.34
4546 8465 4.025979 ACGGATCGAAAGTTTCATAATCGC 60.026 41.667 15.67 8.07 33.76 4.58
4547 8466 4.446234 GGATCGAAAGTTTCATAATCGCG 58.554 43.478 15.67 0.00 33.76 5.87
4550 8469 6.128902 GGATCGAAAGTTTCATAATCGCGTAT 60.129 38.462 15.67 0.00 33.76 3.06
4580 8499 5.241949 TCATGCGTGTTTAATTAAACCCTGT 59.758 36.000 29.33 14.49 43.64 4.00
4598 8517 0.874390 GTTCTGTGCTGAAATCGCCA 59.126 50.000 0.00 0.00 0.00 5.69
4622 8541 0.025513 CTGACTAACGCGATGCTTGC 59.974 55.000 15.93 0.00 0.00 4.01
4835 8754 1.596752 TGCCGTGACAAGCGATGTT 60.597 52.632 0.00 0.00 44.12 2.71
4888 8811 1.133025 CCTCGCCCTTTTAACATGCTG 59.867 52.381 0.00 0.00 0.00 4.41
4890 8813 0.458370 CGCCCTTTTAACATGCTGGC 60.458 55.000 0.00 0.00 0.00 4.85
4899 8829 2.104928 CATGCTGGCATGCTGCTG 59.895 61.111 26.90 20.42 45.71 4.41
4918 8848 2.434359 GGGCTCCACTCCGTTTCG 60.434 66.667 0.00 0.00 0.00 3.46
4977 8907 3.004090 GGGGACATGGGTGGTACC 58.996 66.667 4.43 4.43 38.62 3.34
4988 8918 1.068127 GGGTGGTACCAGTACTATGCG 59.932 57.143 16.93 0.00 41.02 4.73
4994 8924 2.225068 ACCAGTACTATGCGTGCATC 57.775 50.000 11.16 0.00 37.82 3.91
5010 8940 0.813610 CATCGCGGGCTGATGGTTAA 60.814 55.000 6.13 0.00 39.61 2.01
5056 8986 2.291741 GGAAAGGGAGCAATAATCGCAG 59.708 50.000 0.00 0.00 32.38 5.18
5057 8987 1.312815 AAGGGAGCAATAATCGCAGC 58.687 50.000 0.00 0.00 32.38 5.25
5058 8988 0.882042 AGGGAGCAATAATCGCAGCG 60.882 55.000 9.06 9.06 32.38 5.18
5108 9046 3.200593 CGGCTGGATCTGCACTGC 61.201 66.667 11.94 0.00 0.00 4.40
5151 9089 4.908687 AACGACAGGCTGTGCGCA 62.909 61.111 27.45 5.66 41.67 6.09
5193 9131 3.384532 GCCACCACCTTGGGCATG 61.385 66.667 0.00 0.00 46.92 4.06
5194 9132 2.118076 CCACCACCTTGGGCATGT 59.882 61.111 0.00 0.00 43.37 3.21
5195 9133 1.533753 CCACCACCTTGGGCATGTT 60.534 57.895 0.00 0.00 43.37 2.71
5196 9134 1.120795 CCACCACCTTGGGCATGTTT 61.121 55.000 0.00 0.00 43.37 2.83
5197 9135 0.033781 CACCACCTTGGGCATGTTTG 59.966 55.000 0.00 0.00 43.37 2.93
5198 9136 1.120795 ACCACCTTGGGCATGTTTGG 61.121 55.000 0.00 0.00 43.37 3.28
5199 9137 1.120795 CCACCTTGGGCATGTTTGGT 61.121 55.000 0.00 0.00 32.67 3.67
5200 9138 0.758123 CACCTTGGGCATGTTTGGTT 59.242 50.000 0.00 0.00 0.00 3.67
5201 9139 1.967066 CACCTTGGGCATGTTTGGTTA 59.033 47.619 0.00 0.00 0.00 2.85
5202 9140 1.967779 ACCTTGGGCATGTTTGGTTAC 59.032 47.619 0.00 0.00 0.00 2.50
5203 9141 1.967066 CCTTGGGCATGTTTGGTTACA 59.033 47.619 0.00 0.00 0.00 2.41
5204 9142 2.566724 CCTTGGGCATGTTTGGTTACAT 59.433 45.455 0.00 0.00 39.27 2.29
5205 9143 3.007831 CCTTGGGCATGTTTGGTTACATT 59.992 43.478 0.00 0.00 36.64 2.71
5206 9144 3.674528 TGGGCATGTTTGGTTACATTG 57.325 42.857 0.00 0.00 36.64 2.82
5207 9145 2.289320 TGGGCATGTTTGGTTACATTGC 60.289 45.455 0.00 0.00 36.64 3.56
5208 9146 2.345876 GGCATGTTTGGTTACATTGCC 58.654 47.619 11.53 11.53 41.20 4.52
5209 9147 1.991965 GCATGTTTGGTTACATTGCCG 59.008 47.619 0.00 0.00 36.64 5.69
5210 9148 2.352225 GCATGTTTGGTTACATTGCCGA 60.352 45.455 0.00 0.00 36.64 5.54
5211 9149 3.675775 GCATGTTTGGTTACATTGCCGAT 60.676 43.478 0.00 0.00 36.64 4.18
5212 9150 4.493547 CATGTTTGGTTACATTGCCGATT 58.506 39.130 0.00 0.00 36.64 3.34
5213 9151 4.167554 TGTTTGGTTACATTGCCGATTC 57.832 40.909 0.00 0.00 0.00 2.52
5214 9152 3.570125 TGTTTGGTTACATTGCCGATTCA 59.430 39.130 0.00 0.00 0.00 2.57
5215 9153 4.165779 GTTTGGTTACATTGCCGATTCAG 58.834 43.478 0.00 0.00 0.00 3.02
5216 9154 1.742831 TGGTTACATTGCCGATTCAGC 59.257 47.619 0.00 0.00 0.00 4.26
5217 9155 1.065551 GGTTACATTGCCGATTCAGCC 59.934 52.381 0.00 0.00 0.00 4.85
5218 9156 2.017049 GTTACATTGCCGATTCAGCCT 58.983 47.619 0.00 0.00 0.00 4.58
5219 9157 1.667236 TACATTGCCGATTCAGCCTG 58.333 50.000 0.00 0.00 0.00 4.85
5220 9158 1.033746 ACATTGCCGATTCAGCCTGG 61.034 55.000 0.00 0.00 0.00 4.45
5237 9175 4.593864 GCCCGGCGATCCTGACTC 62.594 72.222 9.30 0.00 0.00 3.36
5238 9176 2.835431 CCCGGCGATCCTGACTCT 60.835 66.667 9.30 0.00 0.00 3.24
5239 9177 1.528542 CCCGGCGATCCTGACTCTA 60.529 63.158 9.30 0.00 0.00 2.43
5240 9178 0.896019 CCCGGCGATCCTGACTCTAT 60.896 60.000 9.30 0.00 0.00 1.98
5241 9179 0.962489 CCGGCGATCCTGACTCTATT 59.038 55.000 9.30 0.00 0.00 1.73
5242 9180 1.336332 CCGGCGATCCTGACTCTATTG 60.336 57.143 9.30 0.00 0.00 1.90
5243 9181 1.609072 CGGCGATCCTGACTCTATTGA 59.391 52.381 0.00 0.00 0.00 2.57
5244 9182 2.351253 CGGCGATCCTGACTCTATTGAG 60.351 54.545 0.00 2.37 45.43 3.02
5245 9183 2.609244 GGCGATCCTGACTCTATTGAGC 60.609 54.545 3.93 0.00 43.85 4.26
5246 9184 2.609244 GCGATCCTGACTCTATTGAGCC 60.609 54.545 3.93 0.00 43.85 4.70
5247 9185 2.351253 CGATCCTGACTCTATTGAGCCG 60.351 54.545 3.93 0.00 43.85 5.52
5248 9186 1.403814 TCCTGACTCTATTGAGCCGG 58.596 55.000 0.00 0.00 43.85 6.13
5249 9187 1.115467 CCTGACTCTATTGAGCCGGT 58.885 55.000 1.90 0.00 43.85 5.28
5250 9188 1.482593 CCTGACTCTATTGAGCCGGTT 59.517 52.381 1.90 0.00 43.85 4.44
5251 9189 2.093447 CCTGACTCTATTGAGCCGGTTT 60.093 50.000 1.90 0.00 43.85 3.27
5252 9190 2.932614 CTGACTCTATTGAGCCGGTTTG 59.067 50.000 1.90 0.00 43.85 2.93
5253 9191 2.565391 TGACTCTATTGAGCCGGTTTGA 59.435 45.455 1.90 0.00 43.85 2.69
5254 9192 3.190874 GACTCTATTGAGCCGGTTTGAG 58.809 50.000 1.90 4.21 43.85 3.02
5255 9193 2.093447 ACTCTATTGAGCCGGTTTGAGG 60.093 50.000 1.90 0.00 43.85 3.86
5256 9194 2.168521 CTCTATTGAGCCGGTTTGAGGA 59.831 50.000 1.90 0.00 33.12 3.71
5257 9195 2.168521 TCTATTGAGCCGGTTTGAGGAG 59.831 50.000 1.90 0.00 0.00 3.69
5258 9196 0.984230 ATTGAGCCGGTTTGAGGAGA 59.016 50.000 1.90 0.00 0.00 3.71
5259 9197 0.984230 TTGAGCCGGTTTGAGGAGAT 59.016 50.000 1.90 0.00 0.00 2.75
5260 9198 0.250234 TGAGCCGGTTTGAGGAGATG 59.750 55.000 1.90 0.00 0.00 2.90
5261 9199 1.078143 AGCCGGTTTGAGGAGATGC 60.078 57.895 1.90 0.00 0.00 3.91
5262 9200 1.377202 GCCGGTTTGAGGAGATGCA 60.377 57.895 1.90 0.00 0.00 3.96
5263 9201 1.372087 GCCGGTTTGAGGAGATGCAG 61.372 60.000 1.90 0.00 0.00 4.41
5264 9202 0.745845 CCGGTTTGAGGAGATGCAGG 60.746 60.000 0.00 0.00 0.00 4.85
5265 9203 1.372087 CGGTTTGAGGAGATGCAGGC 61.372 60.000 0.00 0.00 0.00 4.85
5266 9204 1.034292 GGTTTGAGGAGATGCAGGCC 61.034 60.000 0.00 0.00 0.00 5.19
5267 9205 0.322816 GTTTGAGGAGATGCAGGCCA 60.323 55.000 5.01 0.00 0.00 5.36
5268 9206 0.405198 TTTGAGGAGATGCAGGCCAA 59.595 50.000 5.01 0.00 0.00 4.52
5269 9207 0.405198 TTGAGGAGATGCAGGCCAAA 59.595 50.000 5.01 0.00 0.00 3.28
5270 9208 0.405198 TGAGGAGATGCAGGCCAAAA 59.595 50.000 5.01 0.00 0.00 2.44
5271 9209 1.203038 TGAGGAGATGCAGGCCAAAAA 60.203 47.619 5.01 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.859971 TAACCACCCACCCCACCC 60.860 66.667 0.00 0.00 0.00 4.61
9 10 2.761160 CTAACCACCCACCCCACC 59.239 66.667 0.00 0.00 0.00 4.61
10 11 2.035155 GCTAACCACCCACCCCAC 59.965 66.667 0.00 0.00 0.00 4.61
11 12 2.121689 AGCTAACCACCCACCCCA 60.122 61.111 0.00 0.00 0.00 4.96
12 13 2.355115 CAGCTAACCACCCACCCC 59.645 66.667 0.00 0.00 0.00 4.95
13 14 1.303317 CACAGCTAACCACCCACCC 60.303 63.158 0.00 0.00 0.00 4.61
14 15 1.303317 CCACAGCTAACCACCCACC 60.303 63.158 0.00 0.00 0.00 4.61
15 16 1.303317 CCCACAGCTAACCACCCAC 60.303 63.158 0.00 0.00 0.00 4.61
16 17 1.063070 TTCCCACAGCTAACCACCCA 61.063 55.000 0.00 0.00 0.00 4.51
17 18 0.111639 TTTCCCACAGCTAACCACCC 59.888 55.000 0.00 0.00 0.00 4.61
18 19 1.534729 CTTTCCCACAGCTAACCACC 58.465 55.000 0.00 0.00 0.00 4.61
19 20 1.534729 CCTTTCCCACAGCTAACCAC 58.465 55.000 0.00 0.00 0.00 4.16
20 21 0.251165 GCCTTTCCCACAGCTAACCA 60.251 55.000 0.00 0.00 0.00 3.67
21 22 1.305930 CGCCTTTCCCACAGCTAACC 61.306 60.000 0.00 0.00 0.00 2.85
22 23 1.923227 GCGCCTTTCCCACAGCTAAC 61.923 60.000 0.00 0.00 0.00 2.34
23 24 1.674322 GCGCCTTTCCCACAGCTAA 60.674 57.895 0.00 0.00 0.00 3.09
24 25 1.261938 TAGCGCCTTTCCCACAGCTA 61.262 55.000 2.29 0.00 36.30 3.32
25 26 2.527951 CTAGCGCCTTTCCCACAGCT 62.528 60.000 2.29 0.00 38.57 4.24
26 27 2.046314 TAGCGCCTTTCCCACAGC 60.046 61.111 2.29 0.00 0.00 4.40
27 28 1.450312 CCTAGCGCCTTTCCCACAG 60.450 63.158 2.29 0.00 0.00 3.66
28 29 2.668632 CCTAGCGCCTTTCCCACA 59.331 61.111 2.29 0.00 0.00 4.17
29 30 1.984288 ATCCCTAGCGCCTTTCCCAC 61.984 60.000 2.29 0.00 0.00 4.61
30 31 1.279025 AATCCCTAGCGCCTTTCCCA 61.279 55.000 2.29 0.00 0.00 4.37
31 32 0.106669 AAATCCCTAGCGCCTTTCCC 60.107 55.000 2.29 0.00 0.00 3.97
32 33 1.025041 CAAATCCCTAGCGCCTTTCC 58.975 55.000 2.29 0.00 0.00 3.13
33 34 0.382158 GCAAATCCCTAGCGCCTTTC 59.618 55.000 2.29 0.00 0.00 2.62
34 35 0.034089 AGCAAATCCCTAGCGCCTTT 60.034 50.000 2.29 0.00 0.00 3.11
35 36 0.464554 GAGCAAATCCCTAGCGCCTT 60.465 55.000 2.29 0.00 0.00 4.35
36 37 1.147153 GAGCAAATCCCTAGCGCCT 59.853 57.895 2.29 0.00 0.00 5.52
37 38 1.147153 AGAGCAAATCCCTAGCGCC 59.853 57.895 2.29 0.00 0.00 6.53
38 39 1.162800 CCAGAGCAAATCCCTAGCGC 61.163 60.000 0.00 0.00 0.00 5.92
39 40 0.179000 ACCAGAGCAAATCCCTAGCG 59.821 55.000 0.00 0.00 0.00 4.26
40 41 2.019984 CAACCAGAGCAAATCCCTAGC 58.980 52.381 0.00 0.00 0.00 3.42
41 42 2.019984 GCAACCAGAGCAAATCCCTAG 58.980 52.381 0.00 0.00 0.00 3.02
42 43 1.340991 GGCAACCAGAGCAAATCCCTA 60.341 52.381 0.00 0.00 0.00 3.53
43 44 0.613012 GGCAACCAGAGCAAATCCCT 60.613 55.000 0.00 0.00 0.00 4.20
44 45 0.899717 TGGCAACCAGAGCAAATCCC 60.900 55.000 0.00 0.00 0.00 3.85
45 46 1.134907 CATGGCAACCAGAGCAAATCC 60.135 52.381 0.00 0.00 36.75 3.01
46 47 1.134907 CCATGGCAACCAGAGCAAATC 60.135 52.381 0.00 0.00 36.75 2.17
47 48 0.899720 CCATGGCAACCAGAGCAAAT 59.100 50.000 0.00 0.00 36.75 2.32
48 49 1.818959 GCCATGGCAACCAGAGCAAA 61.819 55.000 32.08 0.00 36.75 3.68
49 50 2.277591 GCCATGGCAACCAGAGCAA 61.278 57.895 32.08 0.00 36.75 3.91
50 51 2.677524 GCCATGGCAACCAGAGCA 60.678 61.111 32.08 0.00 36.75 4.26
60 61 1.318158 CCTTCTCTGGTTGCCATGGC 61.318 60.000 30.54 30.54 42.35 4.40
61 62 0.329261 TCCTTCTCTGGTTGCCATGG 59.671 55.000 7.63 7.63 30.82 3.66
62 63 2.089980 CTTCCTTCTCTGGTTGCCATG 58.910 52.381 0.00 0.00 30.82 3.66
63 64 1.005215 CCTTCCTTCTCTGGTTGCCAT 59.995 52.381 0.00 0.00 30.82 4.40
64 65 0.401738 CCTTCCTTCTCTGGTTGCCA 59.598 55.000 0.00 0.00 0.00 4.92
65 66 0.962855 GCCTTCCTTCTCTGGTTGCC 60.963 60.000 0.00 0.00 0.00 4.52
66 67 1.301677 CGCCTTCCTTCTCTGGTTGC 61.302 60.000 0.00 0.00 0.00 4.17
67 68 0.321671 TCGCCTTCCTTCTCTGGTTG 59.678 55.000 0.00 0.00 0.00 3.77
68 69 0.321996 GTCGCCTTCCTTCTCTGGTT 59.678 55.000 0.00 0.00 0.00 3.67
69 70 1.878656 CGTCGCCTTCCTTCTCTGGT 61.879 60.000 0.00 0.00 0.00 4.00
70 71 1.153745 CGTCGCCTTCCTTCTCTGG 60.154 63.158 0.00 0.00 0.00 3.86
71 72 1.153745 CCGTCGCCTTCCTTCTCTG 60.154 63.158 0.00 0.00 0.00 3.35
72 73 1.304217 TCCGTCGCCTTCCTTCTCT 60.304 57.895 0.00 0.00 0.00 3.10
73 74 1.139947 CTCCGTCGCCTTCCTTCTC 59.860 63.158 0.00 0.00 0.00 2.87
74 75 2.352032 CCTCCGTCGCCTTCCTTCT 61.352 63.158 0.00 0.00 0.00 2.85
75 76 1.318158 TACCTCCGTCGCCTTCCTTC 61.318 60.000 0.00 0.00 0.00 3.46
76 77 1.304713 TACCTCCGTCGCCTTCCTT 60.305 57.895 0.00 0.00 0.00 3.36
77 78 1.753463 CTACCTCCGTCGCCTTCCT 60.753 63.158 0.00 0.00 0.00 3.36
78 79 2.783288 CCTACCTCCGTCGCCTTCC 61.783 68.421 0.00 0.00 0.00 3.46
79 80 2.783288 CCCTACCTCCGTCGCCTTC 61.783 68.421 0.00 0.00 0.00 3.46
80 81 2.758737 CCCTACCTCCGTCGCCTT 60.759 66.667 0.00 0.00 0.00 4.35
81 82 4.835891 CCCCTACCTCCGTCGCCT 62.836 72.222 0.00 0.00 0.00 5.52
82 83 4.828296 TCCCCTACCTCCGTCGCC 62.828 72.222 0.00 0.00 0.00 5.54
83 84 2.521224 ATCCCCTACCTCCGTCGC 60.521 66.667 0.00 0.00 0.00 5.19
84 85 2.259439 CGATCCCCTACCTCCGTCG 61.259 68.421 0.00 0.00 0.00 5.12
85 86 1.902432 CCGATCCCCTACCTCCGTC 60.902 68.421 0.00 0.00 0.00 4.79
86 87 2.197875 CCGATCCCCTACCTCCGT 59.802 66.667 0.00 0.00 0.00 4.69
87 88 2.600769 CCCGATCCCCTACCTCCG 60.601 72.222 0.00 0.00 0.00 4.63
88 89 1.228925 CTCCCGATCCCCTACCTCC 60.229 68.421 0.00 0.00 0.00 4.30
89 90 0.410270 ATCTCCCGATCCCCTACCTC 59.590 60.000 0.00 0.00 0.00 3.85
90 91 0.115349 CATCTCCCGATCCCCTACCT 59.885 60.000 0.00 0.00 0.00 3.08
91 92 1.545706 GCATCTCCCGATCCCCTACC 61.546 65.000 0.00 0.00 0.00 3.18
92 93 1.878656 CGCATCTCCCGATCCCCTAC 61.879 65.000 0.00 0.00 0.00 3.18
93 94 1.606601 CGCATCTCCCGATCCCCTA 60.607 63.158 0.00 0.00 0.00 3.53
94 95 2.919856 CGCATCTCCCGATCCCCT 60.920 66.667 0.00 0.00 0.00 4.79
95 96 2.917751 TCGCATCTCCCGATCCCC 60.918 66.667 0.00 0.00 0.00 4.81
96 97 1.903890 TCTCGCATCTCCCGATCCC 60.904 63.158 0.00 0.00 33.83 3.85
97 98 1.287503 GTCTCGCATCTCCCGATCC 59.712 63.158 0.00 0.00 33.83 3.36
98 99 0.385751 TTGTCTCGCATCTCCCGATC 59.614 55.000 0.00 0.00 33.83 3.69
99 100 1.043816 ATTGTCTCGCATCTCCCGAT 58.956 50.000 0.00 0.00 33.83 4.18
100 101 0.103026 CATTGTCTCGCATCTCCCGA 59.897 55.000 0.00 0.00 0.00 5.14
101 102 0.877649 CCATTGTCTCGCATCTCCCG 60.878 60.000 0.00 0.00 0.00 5.14
102 103 1.162800 GCCATTGTCTCGCATCTCCC 61.163 60.000 0.00 0.00 0.00 4.30
103 104 1.493950 CGCCATTGTCTCGCATCTCC 61.494 60.000 0.00 0.00 0.00 3.71
104 105 1.493950 CCGCCATTGTCTCGCATCTC 61.494 60.000 0.00 0.00 0.00 2.75
105 106 1.522355 CCGCCATTGTCTCGCATCT 60.522 57.895 0.00 0.00 0.00 2.90
106 107 3.017323 CCGCCATTGTCTCGCATC 58.983 61.111 0.00 0.00 0.00 3.91
107 108 3.204827 GCCGCCATTGTCTCGCAT 61.205 61.111 0.00 0.00 0.00 4.73
108 109 4.695993 TGCCGCCATTGTCTCGCA 62.696 61.111 0.00 0.00 0.00 5.10
109 110 3.869272 CTGCCGCCATTGTCTCGC 61.869 66.667 0.00 0.00 0.00 5.03
110 111 3.197790 CCTGCCGCCATTGTCTCG 61.198 66.667 0.00 0.00 0.00 4.04
111 112 2.825836 CCCTGCCGCCATTGTCTC 60.826 66.667 0.00 0.00 0.00 3.36
134 135 3.930012 GGCTCCTTCCGATCCCCG 61.930 72.222 0.00 0.00 38.18 5.73
135 136 3.561241 GGGCTCCTTCCGATCCCC 61.561 72.222 0.00 0.00 40.61 4.81
142 143 3.787001 CTGTCCCGGGCTCCTTCC 61.787 72.222 18.49 0.00 0.00 3.46
143 144 4.475135 GCTGTCCCGGGCTCCTTC 62.475 72.222 18.49 2.11 0.00 3.46
160 161 3.108289 CACGACTCAGCACGCCAG 61.108 66.667 0.00 0.00 0.00 4.85
189 190 4.974989 ACGTCCGGGCCAAACGAC 62.975 66.667 28.03 15.11 39.59 4.34
190 191 4.973055 CACGTCCGGGCCAAACGA 62.973 66.667 28.03 5.22 39.59 3.85
192 193 3.656045 CACACGTCCGGGCCAAAC 61.656 66.667 4.39 0.00 0.00 2.93
193 194 4.939368 CCACACGTCCGGGCCAAA 62.939 66.667 4.39 0.00 0.00 3.28
201 202 2.903350 AAAACCGCCCACACGTCC 60.903 61.111 0.00 0.00 0.00 4.79
202 203 2.330041 CAAAACCGCCCACACGTC 59.670 61.111 0.00 0.00 0.00 4.34
203 204 3.894947 GCAAAACCGCCCACACGT 61.895 61.111 0.00 0.00 0.00 4.49
213 214 2.122167 TCCGGTGTGTGGCAAAACC 61.122 57.895 0.00 0.00 39.84 3.27
214 215 1.065109 GTCCGGTGTGTGGCAAAAC 59.935 57.895 0.00 0.00 0.00 2.43
215 216 2.473760 CGTCCGGTGTGTGGCAAAA 61.474 57.895 0.00 0.00 0.00 2.44
216 217 2.897846 CGTCCGGTGTGTGGCAAA 60.898 61.111 0.00 0.00 0.00 3.68
217 218 4.164087 ACGTCCGGTGTGTGGCAA 62.164 61.111 0.00 0.00 0.00 4.52
218 219 4.901123 CACGTCCGGTGTGTGGCA 62.901 66.667 17.74 0.00 41.89 4.92
257 258 4.474846 CCCGCAAAACCGCATCCG 62.475 66.667 0.00 0.00 0.00 4.18
258 259 4.794439 GCCCGCAAAACCGCATCC 62.794 66.667 0.00 0.00 0.00 3.51
263 264 3.588891 GAACTCGCCCGCAAAACCG 62.589 63.158 0.00 0.00 0.00 4.44
264 265 1.792118 AAGAACTCGCCCGCAAAACC 61.792 55.000 0.00 0.00 0.00 3.27
265 266 0.385598 GAAGAACTCGCCCGCAAAAC 60.386 55.000 0.00 0.00 0.00 2.43
266 267 0.534203 AGAAGAACTCGCCCGCAAAA 60.534 50.000 0.00 0.00 0.00 2.44
267 268 0.949105 GAGAAGAACTCGCCCGCAAA 60.949 55.000 0.00 0.00 35.84 3.68
268 269 1.374252 GAGAAGAACTCGCCCGCAA 60.374 57.895 0.00 0.00 35.84 4.85
269 270 2.261671 GAGAAGAACTCGCCCGCA 59.738 61.111 0.00 0.00 35.84 5.69
270 271 2.509561 GGAGAAGAACTCGCCCGC 60.510 66.667 0.00 0.00 45.76 6.13
271 272 0.807667 CATGGAGAAGAACTCGCCCG 60.808 60.000 0.00 0.00 43.15 6.13
272 273 1.092345 GCATGGAGAAGAACTCGCCC 61.092 60.000 0.00 0.00 43.15 6.13
273 274 1.092345 GGCATGGAGAAGAACTCGCC 61.092 60.000 0.00 0.00 45.76 5.54
274 275 0.391661 TGGCATGGAGAAGAACTCGC 60.392 55.000 0.00 0.00 45.76 5.03
275 276 1.338105 TGTGGCATGGAGAAGAACTCG 60.338 52.381 0.00 0.00 45.76 4.18
276 277 2.079925 GTGTGGCATGGAGAAGAACTC 58.920 52.381 0.00 0.00 44.24 3.01
277 278 1.609061 CGTGTGGCATGGAGAAGAACT 60.609 52.381 0.00 0.00 0.00 3.01
278 279 0.798776 CGTGTGGCATGGAGAAGAAC 59.201 55.000 0.00 0.00 0.00 3.01
279 280 0.684535 TCGTGTGGCATGGAGAAGAA 59.315 50.000 0.00 0.00 0.00 2.52
280 281 0.247460 CTCGTGTGGCATGGAGAAGA 59.753 55.000 6.57 0.00 0.00 2.87
281 282 0.742281 CCTCGTGTGGCATGGAGAAG 60.742 60.000 12.23 0.00 0.00 2.85
282 283 1.296392 CCTCGTGTGGCATGGAGAA 59.704 57.895 12.23 0.00 0.00 2.87
283 284 2.981302 CCTCGTGTGGCATGGAGA 59.019 61.111 12.23 0.62 0.00 3.71
304 305 3.961838 TATCGGGTGGTTGTGCCGC 62.962 63.158 0.00 0.00 46.78 6.53
305 306 2.104253 GTATCGGGTGGTTGTGCCG 61.104 63.158 0.00 0.00 41.21 5.69
306 307 1.003112 TGTATCGGGTGGTTGTGCC 60.003 57.895 0.00 0.00 37.90 5.01
307 308 1.303091 GGTGTATCGGGTGGTTGTGC 61.303 60.000 0.00 0.00 0.00 4.57
308 309 0.035598 TGGTGTATCGGGTGGTTGTG 59.964 55.000 0.00 0.00 0.00 3.33
309 310 0.035739 GTGGTGTATCGGGTGGTTGT 59.964 55.000 0.00 0.00 0.00 3.32
310 311 0.035598 TGTGGTGTATCGGGTGGTTG 59.964 55.000 0.00 0.00 0.00 3.77
311 312 0.035739 GTGTGGTGTATCGGGTGGTT 59.964 55.000 0.00 0.00 0.00 3.67
312 313 1.675219 GTGTGGTGTATCGGGTGGT 59.325 57.895 0.00 0.00 0.00 4.16
313 314 1.447140 CGTGTGGTGTATCGGGTGG 60.447 63.158 0.00 0.00 0.00 4.61
314 315 1.011968 CACGTGTGGTGTATCGGGTG 61.012 60.000 7.58 0.00 41.89 4.61
315 316 1.290955 CACGTGTGGTGTATCGGGT 59.709 57.895 7.58 0.00 41.89 5.28
316 317 4.178861 CACGTGTGGTGTATCGGG 57.821 61.111 7.58 0.00 41.89 5.14
326 327 0.438445 CGATAACTGCCACACGTGTG 59.562 55.000 36.13 36.13 45.23 3.82
327 328 0.669318 CCGATAACTGCCACACGTGT 60.669 55.000 17.22 17.22 0.00 4.49
328 329 0.669318 ACCGATAACTGCCACACGTG 60.669 55.000 15.48 15.48 0.00 4.49
329 330 0.669318 CACCGATAACTGCCACACGT 60.669 55.000 0.00 0.00 0.00 4.49
330 331 0.669318 ACACCGATAACTGCCACACG 60.669 55.000 0.00 0.00 0.00 4.49
331 332 1.519408 AACACCGATAACTGCCACAC 58.481 50.000 0.00 0.00 0.00 3.82
332 333 3.404224 TTAACACCGATAACTGCCACA 57.596 42.857 0.00 0.00 0.00 4.17
333 334 4.752661 TTTTAACACCGATAACTGCCAC 57.247 40.909 0.00 0.00 0.00 5.01
365 366 1.358759 CCGTTTGCGCCACTTTTCT 59.641 52.632 4.18 0.00 36.67 2.52
463 464 4.327680 GGAAGAGAGAGATAGAGAGAGGC 58.672 52.174 0.00 0.00 0.00 4.70
464 465 4.350816 TGGGAAGAGAGAGATAGAGAGAGG 59.649 50.000 0.00 0.00 0.00 3.69
465 466 5.567037 TGGGAAGAGAGAGATAGAGAGAG 57.433 47.826 0.00 0.00 0.00 3.20
528 549 0.179012 ATGGATGTGGATGCGATGCA 60.179 50.000 0.00 0.00 44.86 3.96
541 562 6.907961 AGGAATGGATATGGTCATATGGATG 58.092 40.000 8.07 0.00 34.36 3.51
542 563 6.102321 GGAGGAATGGATATGGTCATATGGAT 59.898 42.308 8.07 0.00 34.36 3.41
543 564 5.429762 GGAGGAATGGATATGGTCATATGGA 59.570 44.000 8.07 0.00 34.36 3.41
544 565 5.398353 GGGAGGAATGGATATGGTCATATGG 60.398 48.000 8.07 0.00 34.36 2.74
545 566 5.398353 GGGGAGGAATGGATATGGTCATATG 60.398 48.000 8.07 0.00 34.36 1.78
546 567 4.728860 GGGGAGGAATGGATATGGTCATAT 59.271 45.833 3.37 3.37 36.75 1.78
547 568 4.111577 GGGGAGGAATGGATATGGTCATA 58.888 47.826 0.00 0.00 0.00 2.15
548 569 2.922283 GGGGAGGAATGGATATGGTCAT 59.078 50.000 0.00 0.00 0.00 3.06
549 570 2.348472 GGGGAGGAATGGATATGGTCA 58.652 52.381 0.00 0.00 0.00 4.02
550 571 2.040412 GTGGGGAGGAATGGATATGGTC 59.960 54.545 0.00 0.00 0.00 4.02
551 572 2.065799 GTGGGGAGGAATGGATATGGT 58.934 52.381 0.00 0.00 0.00 3.55
552 573 1.003580 CGTGGGGAGGAATGGATATGG 59.996 57.143 0.00 0.00 0.00 2.74
553 574 1.977854 TCGTGGGGAGGAATGGATATG 59.022 52.381 0.00 0.00 0.00 1.78
554 575 2.158158 TCTCGTGGGGAGGAATGGATAT 60.158 50.000 0.00 0.00 43.34 1.63
579 600 4.193240 AGTATTTCTCCCCTCTCTCTCC 57.807 50.000 0.00 0.00 0.00 3.71
589 610 3.303001 CGACGACGACTAGTATTTCTCCC 60.303 52.174 0.00 0.00 42.66 4.30
616 637 1.012841 GCGTAGACGTACCAGCTACT 58.987 55.000 3.73 0.00 42.22 2.57
619 640 1.134580 TCTAGCGTAGACGTACCAGCT 60.135 52.381 11.74 11.74 42.22 4.24
1109 1188 1.444933 GGGTGGTGGATGGATGGATA 58.555 55.000 0.00 0.00 0.00 2.59
1125 1204 2.529389 AGGAGCCAAGAACCGGGT 60.529 61.111 6.32 0.00 36.82 5.28
1440 1520 3.627395 TGCGGTAATGATGAAGAAGGT 57.373 42.857 0.00 0.00 0.00 3.50
1614 1764 7.415229 GTTGGGATTACTAAAATAAGCGGAAG 58.585 38.462 0.00 0.00 0.00 3.46
1615 1765 6.319405 GGTTGGGATTACTAAAATAAGCGGAA 59.681 38.462 0.00 0.00 0.00 4.30
1616 1766 5.824097 GGTTGGGATTACTAAAATAAGCGGA 59.176 40.000 0.00 0.00 0.00 5.54
1617 1767 5.591067 TGGTTGGGATTACTAAAATAAGCGG 59.409 40.000 0.00 0.00 0.00 5.52
1618 1768 6.317893 ACTGGTTGGGATTACTAAAATAAGCG 59.682 38.462 0.00 0.00 0.00 4.68
1619 1769 7.480810 CACTGGTTGGGATTACTAAAATAAGC 58.519 38.462 0.00 0.00 0.00 3.09
1665 1815 3.260269 TGGTGCCTAGTAGCCTGATAT 57.740 47.619 0.00 0.00 0.00 1.63
1675 1825 1.204146 ACGAATCCATGGTGCCTAGT 58.796 50.000 12.58 3.22 0.00 2.57
1748 1912 2.576615 ACAAACAAGGAGGCTCTGTTC 58.423 47.619 18.85 1.90 0.00 3.18
1756 1920 1.851658 CGGCAAAACAAACAAGGAGG 58.148 50.000 0.00 0.00 0.00 4.30
1770 1934 1.040339 ACAAAAGGAACTGGCGGCAA 61.040 50.000 14.48 0.00 40.86 4.52
1771 1935 1.040339 AACAAAAGGAACTGGCGGCA 61.040 50.000 12.58 12.58 40.86 5.69
1772 1936 0.104120 AAACAAAAGGAACTGGCGGC 59.896 50.000 0.00 0.00 40.86 6.53
1773 1937 2.595124 AAAACAAAAGGAACTGGCGG 57.405 45.000 0.00 0.00 40.86 6.13
1774 1938 3.780902 AGAAAAACAAAAGGAACTGGCG 58.219 40.909 0.00 0.00 40.86 5.69
1797 1988 5.014808 GGATTTGCAGCATTAATCCAACT 57.985 39.130 25.17 0.00 44.30 3.16
1819 2010 4.837567 GCGATAAGCTGTTCCATTAGTTG 58.162 43.478 0.00 0.00 44.04 3.16
1863 2082 4.396166 AGGTGAAGTTGCAAATATCCTTCG 59.604 41.667 17.12 0.00 35.43 3.79
1900 2303 0.529555 CACAAAGCCAACAAACCCGG 60.530 55.000 0.00 0.00 0.00 5.73
1942 2578 1.604378 CGGATCCACCTTCTTGCCT 59.396 57.895 13.41 0.00 36.31 4.75
2026 2662 1.366111 GGCGCTCGCAATACTTGGAA 61.366 55.000 16.36 0.00 44.11 3.53
2234 2873 4.421479 CGCGGAGGAGAACGTGCT 62.421 66.667 0.00 0.00 33.69 4.40
2280 2919 3.106986 TAGGGAGAGGCGGCATTGC 62.107 63.158 13.08 0.00 0.00 3.56
2344 2983 0.461516 AGATGTCATGAGCAGTGCGG 60.462 55.000 10.00 1.01 0.00 5.69
2445 3084 6.768381 CAGAAATTAGAGGACCAAAGGTATCC 59.232 42.308 0.00 0.00 35.25 2.59
2504 3165 0.645355 ATATCGCGAGTGTTGCAACG 59.355 50.000 23.79 13.47 0.00 4.10
2506 3167 0.373370 GCATATCGCGAGTGTTGCAA 59.627 50.000 22.41 0.00 0.00 4.08
2587 3254 3.614092 CCAGAAAGCAGATCTAAAGGCA 58.386 45.455 0.00 0.00 0.00 4.75
2606 3285 7.056635 GGTTCTCAATCTAAAATCTGATCCCA 58.943 38.462 0.00 0.00 0.00 4.37
2626 3314 1.913762 CCGACTGTCCCCAGGTTCT 60.914 63.158 1.55 0.00 43.36 3.01
2664 3352 1.476833 GCAGTTCCACTTCCACCTGAA 60.477 52.381 0.00 0.00 0.00 3.02
2693 3381 0.102120 CGCCAAAGCCAAGTGAACAA 59.898 50.000 0.00 0.00 34.57 2.83
2699 3387 3.297620 CCTGCGCCAAAGCCAAGT 61.298 61.111 4.18 0.00 36.02 3.16
2801 3489 1.667830 GGCACTACAAGCACTGCGA 60.668 57.895 0.00 0.00 0.00 5.10
2802 3490 1.669115 AGGCACTACAAGCACTGCG 60.669 57.895 0.00 0.00 36.02 5.18
2803 3491 1.580845 CCAGGCACTACAAGCACTGC 61.581 60.000 0.00 0.00 36.02 4.40
2804 3492 1.580845 GCCAGGCACTACAAGCACTG 61.581 60.000 6.55 0.00 36.02 3.66
2805 3493 1.302832 GCCAGGCACTACAAGCACT 60.303 57.895 6.55 0.00 36.02 4.40
2806 3494 2.335712 GGCCAGGCACTACAAGCAC 61.336 63.158 15.19 0.00 36.02 4.40
2807 3495 2.034066 GGCCAGGCACTACAAGCA 59.966 61.111 15.19 0.00 36.02 3.91
2808 3496 1.746991 GAGGCCAGGCACTACAAGC 60.747 63.158 15.19 0.00 36.02 4.01
2809 3497 1.078143 GGAGGCCAGGCACTACAAG 60.078 63.158 15.19 0.00 36.02 3.16
2810 3498 2.602676 GGGAGGCCAGGCACTACAA 61.603 63.158 15.19 0.00 36.02 2.41
2811 3499 3.009115 GGGAGGCCAGGCACTACA 61.009 66.667 15.19 0.00 36.02 2.74
2812 3500 2.301738 AAGGGAGGCCAGGCACTAC 61.302 63.158 15.19 8.72 36.02 2.73
2813 3501 2.124996 AAGGGAGGCCAGGCACTA 59.875 61.111 15.19 0.00 36.02 2.74
2814 3502 3.655211 CAAGGGAGGCCAGGCACT 61.655 66.667 15.19 8.06 43.88 4.40
2822 3510 2.298610 GTACTAAATGGCAAGGGAGGC 58.701 52.381 0.00 0.00 0.00 4.70
2823 3511 3.279434 GTGTACTAAATGGCAAGGGAGG 58.721 50.000 0.00 0.00 0.00 4.30
2824 3512 3.279434 GGTGTACTAAATGGCAAGGGAG 58.721 50.000 0.00 0.00 0.00 4.30
2825 3513 2.355310 CGGTGTACTAAATGGCAAGGGA 60.355 50.000 0.00 0.00 0.00 4.20
2826 3514 2.014128 CGGTGTACTAAATGGCAAGGG 58.986 52.381 0.00 0.00 0.00 3.95
2839 3527 6.810182 TGTAGAAGAATAAAGAAGCGGTGTAC 59.190 38.462 0.00 0.00 0.00 2.90
2841 3529 5.790593 TGTAGAAGAATAAAGAAGCGGTGT 58.209 37.500 0.00 0.00 0.00 4.16
2842 3530 5.220491 GCTGTAGAAGAATAAAGAAGCGGTG 60.220 44.000 0.00 0.00 0.00 4.94
2843 3531 4.870991 GCTGTAGAAGAATAAAGAAGCGGT 59.129 41.667 0.00 0.00 0.00 5.68
3023 3715 4.213270 GCAGTTGTACAGTTGCAGTGATAA 59.787 41.667 21.75 0.00 36.59 1.75
3029 3721 2.613595 TCAAGCAGTTGTACAGTTGCAG 59.386 45.455 25.85 19.84 38.97 4.41
3052 3744 5.354234 ACACCAACAAGTTCACTGAAGTTAG 59.646 40.000 10.87 8.61 33.99 2.34
3060 3752 5.319140 GGTTTTACACCAACAAGTTCACT 57.681 39.130 0.00 0.00 46.42 3.41
3145 3838 6.479884 AGGATTTGAGATGCTAAACTGAACT 58.520 36.000 0.00 0.00 0.00 3.01
3184 3877 8.510630 AGGTGGCCTATTAATTTGAGATGCAAA 61.511 37.037 3.32 0.00 40.64 3.68
3185 3878 5.068987 GGTGGCCTATTAATTTGAGATGCAA 59.931 40.000 3.32 0.00 33.88 4.08
3186 3879 4.584325 GGTGGCCTATTAATTTGAGATGCA 59.416 41.667 3.32 0.00 0.00 3.96
3187 3880 4.829492 AGGTGGCCTATTAATTTGAGATGC 59.171 41.667 3.32 0.00 28.47 3.91
3188 3881 6.206243 CAGAGGTGGCCTATTAATTTGAGATG 59.794 42.308 3.32 0.00 31.76 2.90
3189 3882 6.126361 ACAGAGGTGGCCTATTAATTTGAGAT 60.126 38.462 3.32 0.00 31.76 2.75
3190 3883 5.191722 ACAGAGGTGGCCTATTAATTTGAGA 59.808 40.000 3.32 0.00 31.76 3.27
3191 3884 5.440610 ACAGAGGTGGCCTATTAATTTGAG 58.559 41.667 3.32 0.00 31.76 3.02
3244 3937 8.713271 GCATACCTAGAGTTCAAATATAACAGC 58.287 37.037 0.00 0.00 0.00 4.40
3257 3950 4.104831 AGGAACCAAGCATACCTAGAGTT 58.895 43.478 0.00 0.00 0.00 3.01
3319 4012 7.219322 ACCGTTTCTAAACTAAAGTGGTATGT 58.781 34.615 4.24 0.00 36.77 2.29
3321 4014 9.948964 ATAACCGTTTCTAAACTAAAGTGGTAT 57.051 29.630 4.24 0.00 36.77 2.73
3323 4016 8.152898 AGATAACCGTTTCTAAACTAAAGTGGT 58.847 33.333 4.24 0.52 36.77 4.16
3325 4018 8.654215 GGAGATAACCGTTTCTAAACTAAAGTG 58.346 37.037 4.24 0.00 36.77 3.16
3332 6821 7.787725 ATCATGGAGATAACCGTTTCTAAAC 57.212 36.000 0.00 0.00 34.43 2.01
3334 6823 7.201696 GCAAATCATGGAGATAACCGTTTCTAA 60.202 37.037 0.00 0.00 35.39 2.10
3337 6826 5.066505 AGCAAATCATGGAGATAACCGTTTC 59.933 40.000 0.00 0.00 35.39 2.78
3338 6827 4.949856 AGCAAATCATGGAGATAACCGTTT 59.050 37.500 0.00 0.00 35.39 3.60
3367 6856 6.910995 TGCTGTGAGAGAGTTAGTAACTAAC 58.089 40.000 15.52 12.00 44.52 2.34
3368 6857 7.176865 ACATGCTGTGAGAGAGTTAGTAACTAA 59.823 37.037 15.52 0.00 43.03 2.24
3369 6858 6.659668 ACATGCTGTGAGAGAGTTAGTAACTA 59.340 38.462 15.52 0.00 43.03 2.24
3370 6859 5.478679 ACATGCTGTGAGAGAGTTAGTAACT 59.521 40.000 15.48 15.48 46.38 2.24
3371 6860 5.715070 ACATGCTGTGAGAGAGTTAGTAAC 58.285 41.667 4.78 4.78 0.00 2.50
3372 6861 5.984695 ACATGCTGTGAGAGAGTTAGTAA 57.015 39.130 0.00 0.00 0.00 2.24
3390 6882 8.953990 GTGCTACTTTTACAAAGTTTACACATG 58.046 33.333 7.17 0.00 31.89 3.21
3392 6884 7.181418 CGTGCTACTTTTACAAAGTTTACACA 58.819 34.615 18.81 7.23 31.89 3.72
3532 7091 5.013236 CGGTCGTAACGAAATGAAGAATTG 58.987 41.667 0.00 0.00 37.72 2.32
3714 7581 9.118236 GAAGTACAAACATTGAAGAAGCATTAC 57.882 33.333 0.00 0.00 0.00 1.89
3715 7582 8.845227 TGAAGTACAAACATTGAAGAAGCATTA 58.155 29.630 0.00 0.00 0.00 1.90
3716 7583 7.715657 TGAAGTACAAACATTGAAGAAGCATT 58.284 30.769 0.00 0.00 0.00 3.56
3726 7593 5.331098 TGCGCATATGAAGTACAAACATTG 58.669 37.500 5.66 1.59 0.00 2.82
3727 7594 5.559427 TGCGCATATGAAGTACAAACATT 57.441 34.783 5.66 0.00 0.00 2.71
3782 7651 4.801330 TCCATATGCGGTATACCTGAAG 57.199 45.455 19.68 5.31 0.00 3.02
3969 7838 0.179132 TTGCTGCTGCTGTTGTTGTG 60.179 50.000 17.00 0.00 40.48 3.33
3970 7839 0.179129 GTTGCTGCTGCTGTTGTTGT 60.179 50.000 17.00 0.00 40.48 3.32
3971 7840 0.179132 TGTTGCTGCTGCTGTTGTTG 60.179 50.000 17.00 0.00 40.48 3.33
3972 7841 0.101759 CTGTTGCTGCTGCTGTTGTT 59.898 50.000 17.00 0.00 40.48 2.83
3973 7842 1.033746 ACTGTTGCTGCTGCTGTTGT 61.034 50.000 17.00 7.87 40.48 3.32
3974 7843 0.594028 CACTGTTGCTGCTGCTGTTG 60.594 55.000 17.00 7.29 40.48 3.33
3975 7844 1.731700 CACTGTTGCTGCTGCTGTT 59.268 52.632 17.00 0.00 40.48 3.16
3976 7845 2.842256 GCACTGTTGCTGCTGCTGT 61.842 57.895 17.00 7.54 46.17 4.40
4145 8026 1.079750 GAGGCTGGAGTTGTCGTCC 60.080 63.158 0.00 0.00 34.31 4.79
4282 8163 2.430367 GGGGGAAACTGACGCTGT 59.570 61.111 0.00 0.00 0.00 4.40
4299 8194 4.800993 GTGTCTGTCATCTTATGGAGAACG 59.199 45.833 0.00 0.00 38.06 3.95
4408 8308 1.884067 GCCAGAAGAAGGAACCCACAG 60.884 57.143 0.00 0.00 0.00 3.66
4431 8331 4.293648 TACTGCTGCACGCACGGT 62.294 61.111 0.00 7.29 45.47 4.83
4432 8332 3.481903 CTACTGCTGCACGCACGG 61.482 66.667 0.00 2.32 45.47 4.94
4484 8397 7.279981 TCCGACATGAGAAATACTGGTAAATTG 59.720 37.037 0.00 0.00 0.00 2.32
4503 8419 3.670359 CGTTGTTGATGCAAATCCGACAT 60.670 43.478 0.00 0.00 0.00 3.06
4515 8431 4.404507 AACTTTCGATCCGTTGTTGATG 57.595 40.909 0.00 0.00 0.00 3.07
4523 8439 4.025979 GCGATTATGAAACTTTCGATCCGT 60.026 41.667 0.00 0.00 31.74 4.69
4526 8445 5.067021 ACGCGATTATGAAACTTTCGATC 57.933 39.130 15.93 1.16 31.74 3.69
4527 8446 6.764877 ATACGCGATTATGAAACTTTCGAT 57.235 33.333 15.93 0.00 31.74 3.59
4574 8493 2.508526 GATTTCAGCACAGAACAGGGT 58.491 47.619 0.00 0.00 0.00 4.34
4580 8499 0.874390 GTGGCGATTTCAGCACAGAA 59.126 50.000 0.00 0.00 36.08 3.02
4598 8517 1.732732 GCATCGCGTTAGTCAGTCAGT 60.733 52.381 5.77 0.00 0.00 3.41
4677 8596 0.944311 ACAGCTTAGTTGCCACGTCG 60.944 55.000 0.00 0.00 0.00 5.12
4680 8599 1.726791 CAGTACAGCTTAGTTGCCACG 59.273 52.381 0.00 0.00 0.00 4.94
4803 8722 4.468689 GGCACGGGTAGGCTCCAC 62.469 72.222 0.00 0.00 0.00 4.02
4899 8829 3.623703 GAAACGGAGTGGAGCCCCC 62.624 68.421 0.00 0.00 45.00 5.40
4914 8844 0.871722 CAACCATCAAGGACGCGAAA 59.128 50.000 15.93 0.00 41.22 3.46
4918 8848 1.468054 GCAATCAACCATCAAGGACGC 60.468 52.381 0.00 0.00 41.22 5.19
4988 8918 3.945434 CATCAGCCCGCGATGCAC 61.945 66.667 20.09 0.11 34.32 4.57
4994 8924 2.180204 CCTTAACCATCAGCCCGCG 61.180 63.158 0.00 0.00 0.00 6.46
5004 8934 1.543871 GCTTTCGTCCACCCTTAACCA 60.544 52.381 0.00 0.00 0.00 3.67
5010 8940 1.073199 CCAAGCTTTCGTCCACCCT 59.927 57.895 0.00 0.00 0.00 4.34
5057 8987 3.716006 CAACCACGACTGCTGCCG 61.716 66.667 0.00 0.00 0.00 5.69
5058 8988 2.591715 ACAACCACGACTGCTGCC 60.592 61.111 0.00 0.00 0.00 4.85
5108 9046 1.207593 CAAGTTTGGAAGCTCGGCG 59.792 57.895 0.00 0.00 0.00 6.46
5151 9089 3.411517 CCATTCTCGGGTGGCCCT 61.412 66.667 0.00 0.00 42.67 5.19
5164 9102 4.740822 GGTGGCGGTGGCTCCATT 62.741 66.667 6.39 0.00 39.81 3.16
5185 9123 3.805108 GCAATGTAACCAAACATGCCCAA 60.805 43.478 0.00 0.00 39.98 4.12
5188 9126 2.345876 GGCAATGTAACCAAACATGCC 58.654 47.619 11.75 11.75 41.90 4.40
5189 9127 1.991965 CGGCAATGTAACCAAACATGC 59.008 47.619 0.00 0.00 39.98 4.06
5190 9128 3.567576 TCGGCAATGTAACCAAACATG 57.432 42.857 0.00 0.00 39.98 3.21
5191 9129 4.219507 TGAATCGGCAATGTAACCAAACAT 59.780 37.500 0.00 0.00 41.87 2.71
5192 9130 3.570125 TGAATCGGCAATGTAACCAAACA 59.430 39.130 0.00 0.00 0.00 2.83
5193 9131 4.165779 CTGAATCGGCAATGTAACCAAAC 58.834 43.478 0.00 0.00 0.00 2.93
5194 9132 3.366883 GCTGAATCGGCAATGTAACCAAA 60.367 43.478 9.52 0.00 35.55 3.28
5195 9133 2.163412 GCTGAATCGGCAATGTAACCAA 59.837 45.455 9.52 0.00 35.55 3.67
5196 9134 1.742831 GCTGAATCGGCAATGTAACCA 59.257 47.619 9.52 0.00 35.55 3.67
5197 9135 1.065551 GGCTGAATCGGCAATGTAACC 59.934 52.381 16.63 0.00 37.51 2.85
5198 9136 2.017049 AGGCTGAATCGGCAATGTAAC 58.983 47.619 16.63 0.00 37.51 2.50
5199 9137 2.016318 CAGGCTGAATCGGCAATGTAA 58.984 47.619 16.63 0.00 37.51 2.41
5200 9138 1.667236 CAGGCTGAATCGGCAATGTA 58.333 50.000 16.63 0.00 37.51 2.29
5201 9139 1.033746 CCAGGCTGAATCGGCAATGT 61.034 55.000 17.94 0.00 37.51 2.71
5202 9140 1.731700 CCAGGCTGAATCGGCAATG 59.268 57.895 17.94 13.12 37.51 2.82
5203 9141 2.123428 GCCAGGCTGAATCGGCAAT 61.123 57.895 17.94 0.47 44.25 3.56
5204 9142 2.751436 GCCAGGCTGAATCGGCAA 60.751 61.111 17.94 0.00 44.25 4.52
5205 9143 4.802051 GGCCAGGCTGAATCGGCA 62.802 66.667 17.94 0.00 46.75 5.69
5220 9158 4.593864 GAGTCAGGATCGCCGGGC 62.594 72.222 9.54 9.54 39.96 6.13
5221 9159 0.896019 ATAGAGTCAGGATCGCCGGG 60.896 60.000 2.18 0.00 39.96 5.73
5222 9160 0.962489 AATAGAGTCAGGATCGCCGG 59.038 55.000 0.00 0.00 39.96 6.13
5223 9161 1.609072 TCAATAGAGTCAGGATCGCCG 59.391 52.381 0.00 0.00 39.96 6.46
5224 9162 2.609244 GCTCAATAGAGTCAGGATCGCC 60.609 54.545 0.00 0.00 44.00 5.54
5225 9163 2.609244 GGCTCAATAGAGTCAGGATCGC 60.609 54.545 0.00 0.00 45.86 4.58
5226 9164 2.351253 CGGCTCAATAGAGTCAGGATCG 60.351 54.545 0.00 0.00 46.95 3.69
5227 9165 2.029470 CCGGCTCAATAGAGTCAGGATC 60.029 54.545 0.00 0.00 46.95 3.36
5228 9166 1.967066 CCGGCTCAATAGAGTCAGGAT 59.033 52.381 0.00 0.00 46.95 3.24
5229 9167 1.342076 ACCGGCTCAATAGAGTCAGGA 60.342 52.381 0.00 0.00 46.95 3.86
5230 9168 1.115467 ACCGGCTCAATAGAGTCAGG 58.885 55.000 0.00 0.00 46.95 3.86
5231 9169 2.932614 CAAACCGGCTCAATAGAGTCAG 59.067 50.000 0.00 0.00 46.95 3.51
5232 9170 2.565391 TCAAACCGGCTCAATAGAGTCA 59.435 45.455 0.00 0.00 46.95 3.41
5233 9171 3.190874 CTCAAACCGGCTCAATAGAGTC 58.809 50.000 0.00 0.00 44.00 3.36
5234 9172 2.093447 CCTCAAACCGGCTCAATAGAGT 60.093 50.000 0.00 0.00 44.00 3.24
5235 9173 2.168521 TCCTCAAACCGGCTCAATAGAG 59.831 50.000 0.00 0.00 44.96 2.43
5236 9174 2.168521 CTCCTCAAACCGGCTCAATAGA 59.831 50.000 0.00 0.00 0.00 1.98
5237 9175 2.168521 TCTCCTCAAACCGGCTCAATAG 59.831 50.000 0.00 0.00 0.00 1.73
5238 9176 2.184533 TCTCCTCAAACCGGCTCAATA 58.815 47.619 0.00 0.00 0.00 1.90
5239 9177 0.984230 TCTCCTCAAACCGGCTCAAT 59.016 50.000 0.00 0.00 0.00 2.57
5240 9178 0.984230 ATCTCCTCAAACCGGCTCAA 59.016 50.000 0.00 0.00 0.00 3.02
5241 9179 0.250234 CATCTCCTCAAACCGGCTCA 59.750 55.000 0.00 0.00 0.00 4.26
5242 9180 1.092345 GCATCTCCTCAAACCGGCTC 61.092 60.000 0.00 0.00 0.00 4.70
5243 9181 1.078143 GCATCTCCTCAAACCGGCT 60.078 57.895 0.00 0.00 0.00 5.52
5244 9182 1.372087 CTGCATCTCCTCAAACCGGC 61.372 60.000 0.00 0.00 0.00 6.13
5245 9183 0.745845 CCTGCATCTCCTCAAACCGG 60.746 60.000 0.00 0.00 0.00 5.28
5246 9184 1.372087 GCCTGCATCTCCTCAAACCG 61.372 60.000 0.00 0.00 0.00 4.44
5247 9185 1.034292 GGCCTGCATCTCCTCAAACC 61.034 60.000 0.00 0.00 0.00 3.27
5248 9186 0.322816 TGGCCTGCATCTCCTCAAAC 60.323 55.000 3.32 0.00 0.00 2.93
5249 9187 0.405198 TTGGCCTGCATCTCCTCAAA 59.595 50.000 3.32 0.00 0.00 2.69
5250 9188 0.405198 TTTGGCCTGCATCTCCTCAA 59.595 50.000 3.32 0.00 0.00 3.02
5251 9189 0.405198 TTTTGGCCTGCATCTCCTCA 59.595 50.000 3.32 0.00 0.00 3.86
5252 9190 1.549203 TTTTTGGCCTGCATCTCCTC 58.451 50.000 3.32 0.00 0.00 3.71
5253 9191 3.772096 TTTTTGGCCTGCATCTCCT 57.228 47.368 3.32 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.