Multiple sequence alignment - TraesCS6D01G244700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G244700 chr6D 100.000 4633 0 0 1 4633 346839763 346835131 0.000000e+00 8556.0
1 TraesCS6D01G244700 chr6D 79.084 808 103 36 1001 1760 346703311 346702522 3.220000e-136 496.0
2 TraesCS6D01G244700 chr6D 90.343 321 26 3 1832 2149 346702314 346701996 2.580000e-112 416.0
3 TraesCS6D01G244700 chr6D 90.116 172 6 5 355 515 328505362 328505533 3.630000e-51 213.0
4 TraesCS6D01G244700 chr6D 90.116 172 6 5 355 515 334031074 334030903 3.630000e-51 213.0
5 TraesCS6D01G244700 chr6D 81.548 168 26 5 3232 3396 346700298 346700133 2.910000e-27 134.0
6 TraesCS6D01G244700 chr6D 100.000 30 0 0 487 516 839589 839618 6.480000e-04 56.5
7 TraesCS6D01G244700 chr6A 89.208 2020 114 53 513 2474 496572527 496574500 0.000000e+00 2427.0
8 TraesCS6D01G244700 chr6A 88.452 1983 133 35 2672 4633 496575035 496576942 0.000000e+00 2305.0
9 TraesCS6D01G244700 chr6A 87.387 333 37 4 1820 2149 496831507 496831837 1.220000e-100 377.0
10 TraesCS6D01G244700 chr6A 78.221 652 83 32 1001 1606 496830447 496831085 3.410000e-96 363.0
11 TraesCS6D01G244700 chr6A 74.187 984 146 70 2675 3603 496832706 496833636 1.250000e-80 311.0
12 TraesCS6D01G244700 chr6A 95.455 132 4 2 355 484 420654564 420654433 4.700000e-50 209.0
13 TraesCS6D01G244700 chr6A 89.256 121 7 3 2476 2592 496574922 496575040 3.740000e-31 147.0
14 TraesCS6D01G244700 chr6A 88.991 109 11 1 1642 1750 496831150 496831257 2.910000e-27 134.0
15 TraesCS6D01G244700 chr6B 88.428 1979 161 25 2669 4630 534229594 534231521 0.000000e+00 2324.0
16 TraesCS6D01G244700 chr6B 92.300 1013 41 12 701 1700 534227921 534228909 0.000000e+00 1404.0
17 TraesCS6D01G244700 chr6B 89.911 337 27 3 1820 2149 534511397 534511733 1.190000e-115 427.0
18 TraesCS6D01G244700 chr6B 80.961 562 69 30 1001 1539 534510504 534511050 1.200000e-110 411.0
19 TraesCS6D01G244700 chr6B 92.746 193 2 2 521 713 534226363 534226543 7.640000e-68 268.0
20 TraesCS6D01G244700 chr6B 91.515 165 12 2 2312 2474 534228913 534229077 4.660000e-55 226.0
21 TraesCS6D01G244700 chr6B 82.822 163 18 2 364 516 102081146 102081308 2.250000e-28 137.0
22 TraesCS6D01G244700 chr6B 81.928 166 23 6 3229 3391 534514056 534514217 2.910000e-27 134.0
23 TraesCS6D01G244700 chr6B 86.508 126 6 2 2469 2594 534229490 534229604 1.350000e-25 128.0
24 TraesCS6D01G244700 chr3D 96.893 354 10 1 1 354 606140534 606140182 3.990000e-165 592.0
25 TraesCS6D01G244700 chr3D 91.617 167 8 4 355 515 269732044 269731878 4.660000e-55 226.0
26 TraesCS6D01G244700 chr3D 90.116 172 6 5 355 515 299266687 299266516 3.630000e-51 213.0
27 TraesCS6D01G244700 chr3D 86.842 76 8 2 2595 2669 590445367 590445293 2.970000e-12 84.2
28 TraesCS6D01G244700 chr2D 96.639 357 9 3 1 356 112310336 112309982 1.440000e-164 590.0
29 TraesCS6D01G244700 chr2D 80.689 668 105 17 3982 4631 575827116 575827777 8.950000e-137 497.0
30 TraesCS6D01G244700 chr2D 91.111 360 23 5 1 355 11497989 11497634 3.240000e-131 479.0
31 TraesCS6D01G244700 chr5D 96.078 357 11 2 1 356 520506874 520506520 3.110000e-161 579.0
32 TraesCS6D01G244700 chr5D 88.462 78 6 3 2594 2668 66760373 66760296 1.780000e-14 91.6
33 TraesCS6D01G244700 chr4D 94.199 362 13 4 1 356 73420802 73421161 3.150000e-151 545.0
34 TraesCS6D01G244700 chr5B 79.881 671 109 19 3982 4633 538045538 538044875 7.020000e-128 468.0
35 TraesCS6D01G244700 chr5B 82.391 460 66 10 4179 4631 614364772 614364321 2.020000e-103 387.0
36 TraesCS6D01G244700 chr5B 85.205 365 41 10 1 356 396823803 396824163 3.410000e-96 363.0
37 TraesCS6D01G244700 chr1A 90.265 339 27 4 1 337 405547440 405547774 5.500000e-119 438.0
38 TraesCS6D01G244700 chr1A 94.697 132 5 2 355 484 243246284 243246153 2.190000e-48 204.0
39 TraesCS6D01G244700 chr1A 97.297 37 0 1 3812 3847 516590073 516590109 1.390000e-05 62.1
40 TraesCS6D01G244700 chr7B 78.947 646 104 18 3983 4608 553328554 553329187 1.200000e-110 411.0
41 TraesCS6D01G244700 chr7B 82.789 459 66 8 4179 4631 742247071 742246620 9.340000e-107 398.0
42 TraesCS6D01G244700 chr7B 82.819 454 64 9 4181 4628 237483315 237483760 1.210000e-105 394.0
43 TraesCS6D01G244700 chr7A 87.569 362 36 8 2 357 78848692 78849050 1.200000e-110 411.0
44 TraesCS6D01G244700 chr7A 88.485 165 14 5 355 516 718285588 718285426 1.320000e-45 195.0
45 TraesCS6D01G244700 chr7A 88.485 165 14 5 355 516 718289777 718289615 1.320000e-45 195.0
46 TraesCS6D01G244700 chr1B 83.043 460 63 10 4179 4631 532153926 532153475 2.010000e-108 403.0
47 TraesCS6D01G244700 chr1B 85.095 369 42 13 1 360 362879366 362879730 9.470000e-97 364.0
48 TraesCS6D01G244700 chr1B 75.862 174 31 4 355 517 5176523 5176696 1.380000e-10 78.7
49 TraesCS6D01G244700 chr2B 82.599 454 65 9 4181 4628 651134124 651134569 5.620000e-104 388.0
50 TraesCS6D01G244700 chr2B 87.912 182 13 6 341 513 164334209 164334390 6.080000e-49 206.0
51 TraesCS6D01G244700 chr4A 76.805 651 119 17 3981 4608 140988627 140989268 2.070000e-88 337.0
52 TraesCS6D01G244700 chr2A 95.679 162 5 1 1944 2105 34661756 34661597 4.600000e-65 259.0
53 TraesCS6D01G244700 chr2A 83.908 174 17 3 354 516 1882169 1882342 6.210000e-34 156.0
54 TraesCS6D01G244700 chr3B 72.810 548 126 18 3983 4517 806266546 806266009 1.030000e-36 165.0
55 TraesCS6D01G244700 chr3B 89.796 49 4 1 2602 2649 30232700 30232652 1.390000e-05 62.1
56 TraesCS6D01G244700 chr4B 97.619 42 1 0 1707 1748 620943437 620943478 6.430000e-09 73.1
57 TraesCS6D01G244700 chr1D 100.000 30 0 0 487 516 209110288 209110259 6.480000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G244700 chr6D 346835131 346839763 4632 True 8556.000000 8556 100.000000 1 4633 1 chr6D.!!$R2 4632
1 TraesCS6D01G244700 chr6D 346700133 346703311 3178 True 348.666667 496 83.658333 1001 3396 3 chr6D.!!$R3 2395
2 TraesCS6D01G244700 chr6A 496572527 496576942 4415 False 1626.333333 2427 88.972000 513 4633 3 chr6A.!!$F1 4120
3 TraesCS6D01G244700 chr6A 496830447 496833636 3189 False 296.250000 377 82.196500 1001 3603 4 chr6A.!!$F2 2602
4 TraesCS6D01G244700 chr6B 534226363 534231521 5158 False 870.000000 2324 90.299400 521 4630 5 chr6B.!!$F2 4109
5 TraesCS6D01G244700 chr6B 534510504 534514217 3713 False 324.000000 427 84.266667 1001 3391 3 chr6B.!!$F3 2390
6 TraesCS6D01G244700 chr2D 575827116 575827777 661 False 497.000000 497 80.689000 3982 4631 1 chr2D.!!$F1 649
7 TraesCS6D01G244700 chr5B 538044875 538045538 663 True 468.000000 468 79.881000 3982 4633 1 chr5B.!!$R1 651
8 TraesCS6D01G244700 chr7B 553328554 553329187 633 False 411.000000 411 78.947000 3983 4608 1 chr7B.!!$F2 625
9 TraesCS6D01G244700 chr4A 140988627 140989268 641 False 337.000000 337 76.805000 3981 4608 1 chr4A.!!$F1 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.026803 GCGACGTGGAGAATTGATGC 59.973 55.000 0.11 0.0 0.00 3.91 F
287 288 0.102300 GGCGCTGTGAAAAACTGGTT 59.898 50.000 7.64 0.0 0.00 3.67 F
890 2292 0.255318 GGTCTCCCTCCTCGTCACTA 59.745 60.000 0.00 0.0 0.00 2.74 F
1760 3278 0.543277 TGAGCCCATACTCCAAGCTG 59.457 55.000 0.00 0.0 35.72 4.24 F
2310 5453 1.004044 AGGAAGGACATTGCTGGAGTG 59.996 52.381 0.00 0.0 38.30 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1304 2771 0.316772 CTATACGTGCTCCGGTGTCG 60.317 60.0 16.82 16.82 42.24 4.35 R
1330 2804 0.674581 CTGAGCGTTCCTTGGCATGA 60.675 55.0 0.00 0.00 0.00 3.07 R
1997 3728 1.188863 GCCTGCCACATCCTTGAAAT 58.811 50.0 0.00 0.00 0.00 2.17 R
3006 7626 0.108756 GGCACGTGGAAGTAGAGACC 60.109 60.0 18.88 1.44 0.00 3.85 R
3643 8289 0.248539 CAGTAGTACGAAGCGAGGCC 60.249 60.0 0.00 0.00 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.341176 GCAACCCTGCTGCAAAGG 59.659 61.111 14.92 14.92 45.74 3.11
30 31 2.501602 GCAACCCTGCTGCAAAGGT 61.502 57.895 16.09 16.09 45.74 3.50
31 32 1.364901 CAACCCTGCTGCAAAGGTG 59.635 57.895 20.91 12.40 32.45 4.00
45 46 3.658398 AGGTGCATCCTTCTGTTGG 57.342 52.632 0.00 0.00 45.67 3.77
46 47 1.067295 AGGTGCATCCTTCTGTTGGA 58.933 50.000 0.00 0.00 45.67 3.53
47 48 1.168714 GGTGCATCCTTCTGTTGGAC 58.831 55.000 0.00 0.00 36.30 4.02
48 49 1.545428 GGTGCATCCTTCTGTTGGACA 60.545 52.381 0.00 0.00 36.90 4.02
49 50 2.229792 GTGCATCCTTCTGTTGGACAA 58.770 47.619 0.00 0.00 35.68 3.18
50 51 2.227388 GTGCATCCTTCTGTTGGACAAG 59.773 50.000 0.00 0.00 35.68 3.16
51 52 1.200948 GCATCCTTCTGTTGGACAAGC 59.799 52.381 0.00 0.00 36.30 4.01
52 53 1.466167 CATCCTTCTGTTGGACAAGCG 59.534 52.381 0.00 0.00 36.30 4.68
53 54 0.756294 TCCTTCTGTTGGACAAGCGA 59.244 50.000 0.00 0.00 0.00 4.93
54 55 0.868406 CCTTCTGTTGGACAAGCGAC 59.132 55.000 0.00 0.00 0.00 5.19
55 56 0.508641 CTTCTGTTGGACAAGCGACG 59.491 55.000 0.00 0.00 0.00 5.12
56 57 0.179094 TTCTGTTGGACAAGCGACGT 60.179 50.000 0.00 0.00 0.00 4.34
57 58 0.874175 TCTGTTGGACAAGCGACGTG 60.874 55.000 0.00 0.00 0.00 4.49
58 59 1.831389 CTGTTGGACAAGCGACGTGG 61.831 60.000 0.00 0.00 0.00 4.94
59 60 1.593209 GTTGGACAAGCGACGTGGA 60.593 57.895 0.11 0.00 0.00 4.02
60 61 1.300620 TTGGACAAGCGACGTGGAG 60.301 57.895 0.11 0.00 0.00 3.86
61 62 1.740332 TTGGACAAGCGACGTGGAGA 61.740 55.000 0.11 0.00 0.00 3.71
62 63 1.006571 GGACAAGCGACGTGGAGAA 60.007 57.895 0.11 0.00 0.00 2.87
63 64 0.389948 GGACAAGCGACGTGGAGAAT 60.390 55.000 0.11 0.00 0.00 2.40
64 65 1.429463 GACAAGCGACGTGGAGAATT 58.571 50.000 0.11 0.00 0.00 2.17
65 66 1.126846 GACAAGCGACGTGGAGAATTG 59.873 52.381 0.11 3.02 0.00 2.32
66 67 1.270094 ACAAGCGACGTGGAGAATTGA 60.270 47.619 0.11 0.00 0.00 2.57
67 68 2.002586 CAAGCGACGTGGAGAATTGAT 58.997 47.619 0.11 0.00 0.00 2.57
68 69 1.645034 AGCGACGTGGAGAATTGATG 58.355 50.000 0.11 0.00 0.00 3.07
69 70 0.026803 GCGACGTGGAGAATTGATGC 59.973 55.000 0.11 0.00 0.00 3.91
70 71 0.298707 CGACGTGGAGAATTGATGCG 59.701 55.000 0.00 0.00 0.00 4.73
71 72 0.652592 GACGTGGAGAATTGATGCGG 59.347 55.000 0.00 0.00 0.00 5.69
72 73 0.249120 ACGTGGAGAATTGATGCGGA 59.751 50.000 0.00 0.00 0.00 5.54
73 74 1.134401 ACGTGGAGAATTGATGCGGAT 60.134 47.619 0.00 0.00 0.00 4.18
74 75 1.528586 CGTGGAGAATTGATGCGGATC 59.471 52.381 10.37 10.37 0.00 3.36
75 76 1.528586 GTGGAGAATTGATGCGGATCG 59.471 52.381 12.54 0.00 0.00 3.69
86 87 2.892640 CGGATCGCCTGGAAGTGA 59.107 61.111 0.00 0.00 0.00 3.41
87 88 1.227089 CGGATCGCCTGGAAGTGAG 60.227 63.158 0.00 0.00 0.00 3.51
88 89 1.144936 GGATCGCCTGGAAGTGAGG 59.855 63.158 0.00 0.00 0.00 3.86
89 90 1.617947 GGATCGCCTGGAAGTGAGGT 61.618 60.000 0.00 0.00 32.60 3.85
90 91 0.460987 GATCGCCTGGAAGTGAGGTG 60.461 60.000 0.00 0.00 41.72 4.00
91 92 1.194781 ATCGCCTGGAAGTGAGGTGT 61.195 55.000 0.00 0.00 41.22 4.16
92 93 1.669115 CGCCTGGAAGTGAGGTGTG 60.669 63.158 0.00 0.00 36.50 3.82
93 94 1.302832 GCCTGGAAGTGAGGTGTGG 60.303 63.158 0.00 0.00 32.60 4.17
94 95 1.376466 CCTGGAAGTGAGGTGTGGG 59.624 63.158 0.00 0.00 0.00 4.61
95 96 1.127567 CCTGGAAGTGAGGTGTGGGA 61.128 60.000 0.00 0.00 0.00 4.37
96 97 0.322975 CTGGAAGTGAGGTGTGGGAG 59.677 60.000 0.00 0.00 0.00 4.30
97 98 1.127567 TGGAAGTGAGGTGTGGGAGG 61.128 60.000 0.00 0.00 0.00 4.30
98 99 1.679898 GAAGTGAGGTGTGGGAGGG 59.320 63.158 0.00 0.00 0.00 4.30
99 100 1.842381 GAAGTGAGGTGTGGGAGGGG 61.842 65.000 0.00 0.00 0.00 4.79
100 101 2.203938 GTGAGGTGTGGGAGGGGA 60.204 66.667 0.00 0.00 0.00 4.81
101 102 2.122729 TGAGGTGTGGGAGGGGAG 59.877 66.667 0.00 0.00 0.00 4.30
102 103 3.403558 GAGGTGTGGGAGGGGAGC 61.404 72.222 0.00 0.00 0.00 4.70
103 104 4.270153 AGGTGTGGGAGGGGAGCA 62.270 66.667 0.00 0.00 0.00 4.26
104 105 3.017581 GGTGTGGGAGGGGAGCAT 61.018 66.667 0.00 0.00 0.00 3.79
105 106 2.273449 GTGTGGGAGGGGAGCATG 59.727 66.667 0.00 0.00 0.00 4.06
106 107 2.124768 TGTGGGAGGGGAGCATGA 59.875 61.111 0.00 0.00 0.00 3.07
107 108 1.997311 TGTGGGAGGGGAGCATGAG 60.997 63.158 0.00 0.00 0.00 2.90
108 109 2.367377 TGGGAGGGGAGCATGAGG 60.367 66.667 0.00 0.00 0.00 3.86
109 110 3.174265 GGGAGGGGAGCATGAGGG 61.174 72.222 0.00 0.00 0.00 4.30
110 111 3.174265 GGAGGGGAGCATGAGGGG 61.174 72.222 0.00 0.00 0.00 4.79
111 112 3.174265 GAGGGGAGCATGAGGGGG 61.174 72.222 0.00 0.00 0.00 5.40
130 131 1.534729 GGCGACCAGTGGAAAAATCT 58.465 50.000 18.40 0.00 0.00 2.40
131 132 2.706890 GGCGACCAGTGGAAAAATCTA 58.293 47.619 18.40 0.00 0.00 1.98
132 133 3.279434 GGCGACCAGTGGAAAAATCTAT 58.721 45.455 18.40 0.00 0.00 1.98
133 134 3.312697 GGCGACCAGTGGAAAAATCTATC 59.687 47.826 18.40 0.00 0.00 2.08
134 135 3.001330 GCGACCAGTGGAAAAATCTATCG 59.999 47.826 18.40 12.27 0.00 2.92
135 136 4.181578 CGACCAGTGGAAAAATCTATCGT 58.818 43.478 18.40 0.00 0.00 3.73
136 137 4.630069 CGACCAGTGGAAAAATCTATCGTT 59.370 41.667 18.40 0.00 0.00 3.85
137 138 5.445939 CGACCAGTGGAAAAATCTATCGTTG 60.446 44.000 18.40 0.00 0.00 4.10
138 139 5.313712 ACCAGTGGAAAAATCTATCGTTGT 58.686 37.500 18.40 0.00 0.00 3.32
139 140 5.768164 ACCAGTGGAAAAATCTATCGTTGTT 59.232 36.000 18.40 0.00 0.00 2.83
140 141 6.072673 ACCAGTGGAAAAATCTATCGTTGTTC 60.073 38.462 18.40 0.00 0.00 3.18
141 142 6.314784 CAGTGGAAAAATCTATCGTTGTTCC 58.685 40.000 1.69 1.69 34.83 3.62
142 143 5.414765 AGTGGAAAAATCTATCGTTGTTCCC 59.585 40.000 5.59 0.00 33.58 3.97
143 144 5.414765 GTGGAAAAATCTATCGTTGTTCCCT 59.585 40.000 5.59 0.00 33.58 4.20
144 145 6.007703 TGGAAAAATCTATCGTTGTTCCCTT 58.992 36.000 5.59 0.00 33.58 3.95
145 146 6.492087 TGGAAAAATCTATCGTTGTTCCCTTT 59.508 34.615 5.59 0.00 33.58 3.11
146 147 7.027760 GGAAAAATCTATCGTTGTTCCCTTTC 58.972 38.462 0.00 0.00 0.00 2.62
147 148 6.510879 AAAATCTATCGTTGTTCCCTTTCC 57.489 37.500 0.00 0.00 0.00 3.13
148 149 5.437191 AATCTATCGTTGTTCCCTTTCCT 57.563 39.130 0.00 0.00 0.00 3.36
149 150 4.903045 TCTATCGTTGTTCCCTTTCCTT 57.097 40.909 0.00 0.00 0.00 3.36
150 151 4.828829 TCTATCGTTGTTCCCTTTCCTTC 58.171 43.478 0.00 0.00 0.00 3.46
151 152 3.790089 ATCGTTGTTCCCTTTCCTTCT 57.210 42.857 0.00 0.00 0.00 2.85
152 153 2.846193 TCGTTGTTCCCTTTCCTTCTG 58.154 47.619 0.00 0.00 0.00 3.02
153 154 2.436542 TCGTTGTTCCCTTTCCTTCTGA 59.563 45.455 0.00 0.00 0.00 3.27
154 155 3.072476 TCGTTGTTCCCTTTCCTTCTGAT 59.928 43.478 0.00 0.00 0.00 2.90
155 156 3.189287 CGTTGTTCCCTTTCCTTCTGATG 59.811 47.826 0.00 0.00 0.00 3.07
156 157 4.145052 GTTGTTCCCTTTCCTTCTGATGT 58.855 43.478 0.00 0.00 0.00 3.06
157 158 3.754965 TGTTCCCTTTCCTTCTGATGTG 58.245 45.455 0.00 0.00 0.00 3.21
158 159 3.084786 GTTCCCTTTCCTTCTGATGTGG 58.915 50.000 0.00 0.00 0.00 4.17
159 160 1.004745 TCCCTTTCCTTCTGATGTGGC 59.995 52.381 0.00 0.00 0.00 5.01
160 161 1.005215 CCCTTTCCTTCTGATGTGGCT 59.995 52.381 0.00 0.00 0.00 4.75
161 162 2.239654 CCCTTTCCTTCTGATGTGGCTA 59.760 50.000 0.00 0.00 0.00 3.93
162 163 3.117738 CCCTTTCCTTCTGATGTGGCTAT 60.118 47.826 0.00 0.00 0.00 2.97
163 164 3.881688 CCTTTCCTTCTGATGTGGCTATG 59.118 47.826 0.00 0.00 0.00 2.23
164 165 4.521146 CTTTCCTTCTGATGTGGCTATGT 58.479 43.478 0.00 0.00 0.00 2.29
165 166 5.396772 CCTTTCCTTCTGATGTGGCTATGTA 60.397 44.000 0.00 0.00 0.00 2.29
166 167 5.692115 TTCCTTCTGATGTGGCTATGTAA 57.308 39.130 0.00 0.00 0.00 2.41
167 168 5.894298 TCCTTCTGATGTGGCTATGTAAT 57.106 39.130 0.00 0.00 0.00 1.89
168 169 6.994421 TCCTTCTGATGTGGCTATGTAATA 57.006 37.500 0.00 0.00 0.00 0.98
169 170 7.373617 TCCTTCTGATGTGGCTATGTAATAA 57.626 36.000 0.00 0.00 0.00 1.40
170 171 7.977818 TCCTTCTGATGTGGCTATGTAATAAT 58.022 34.615 0.00 0.00 0.00 1.28
171 172 9.100197 TCCTTCTGATGTGGCTATGTAATAATA 57.900 33.333 0.00 0.00 0.00 0.98
172 173 9.725019 CCTTCTGATGTGGCTATGTAATAATAA 57.275 33.333 0.00 0.00 0.00 1.40
197 198 9.751542 AAGTATCTAGATTTCGTTCCTGTTATG 57.248 33.333 11.25 0.00 0.00 1.90
198 199 8.915036 AGTATCTAGATTTCGTTCCTGTTATGT 58.085 33.333 11.25 0.00 0.00 2.29
199 200 9.530633 GTATCTAGATTTCGTTCCTGTTATGTT 57.469 33.333 11.25 0.00 0.00 2.71
200 201 7.827819 TCTAGATTTCGTTCCTGTTATGTTG 57.172 36.000 0.00 0.00 0.00 3.33
201 202 5.880054 AGATTTCGTTCCTGTTATGTTGG 57.120 39.130 0.00 0.00 0.00 3.77
202 203 5.556915 AGATTTCGTTCCTGTTATGTTGGA 58.443 37.500 0.00 0.00 0.00 3.53
203 204 5.643777 AGATTTCGTTCCTGTTATGTTGGAG 59.356 40.000 0.00 0.00 0.00 3.86
204 205 4.610605 TTCGTTCCTGTTATGTTGGAGA 57.389 40.909 0.00 0.00 0.00 3.71
205 206 4.188247 TCGTTCCTGTTATGTTGGAGAG 57.812 45.455 0.00 0.00 0.00 3.20
206 207 3.830178 TCGTTCCTGTTATGTTGGAGAGA 59.170 43.478 0.00 0.00 0.00 3.10
207 208 4.282449 TCGTTCCTGTTATGTTGGAGAGAA 59.718 41.667 0.00 0.00 0.00 2.87
208 209 4.389077 CGTTCCTGTTATGTTGGAGAGAAC 59.611 45.833 0.00 0.00 0.00 3.01
209 210 5.552178 GTTCCTGTTATGTTGGAGAGAACT 58.448 41.667 0.00 0.00 0.00 3.01
210 211 5.825593 TCCTGTTATGTTGGAGAGAACTT 57.174 39.130 0.00 0.00 0.00 2.66
211 212 5.794894 TCCTGTTATGTTGGAGAGAACTTC 58.205 41.667 0.00 0.00 0.00 3.01
212 213 5.544176 TCCTGTTATGTTGGAGAGAACTTCT 59.456 40.000 0.00 0.00 39.43 2.85
213 214 5.641209 CCTGTTATGTTGGAGAGAACTTCTG 59.359 44.000 0.00 0.00 35.87 3.02
214 215 4.997395 TGTTATGTTGGAGAGAACTTCTGC 59.003 41.667 0.00 0.00 43.97 4.26
215 216 5.221722 TGTTATGTTGGAGAGAACTTCTGCT 60.222 40.000 0.00 0.00 44.03 4.24
216 217 3.393089 TGTTGGAGAGAACTTCTGCTC 57.607 47.619 0.00 3.40 44.03 4.26
217 218 2.968574 TGTTGGAGAGAACTTCTGCTCT 59.031 45.455 0.00 0.00 44.03 4.09
221 222 3.405170 GAGAGAACTTCTGCTCTCGAG 57.595 52.381 5.93 5.93 45.21 4.04
222 223 2.747446 GAGAGAACTTCTGCTCTCGAGT 59.253 50.000 13.13 0.00 45.21 4.18
223 224 3.153919 AGAGAACTTCTGCTCTCGAGTT 58.846 45.455 13.13 0.00 42.46 3.01
224 225 3.190535 AGAGAACTTCTGCTCTCGAGTTC 59.809 47.826 13.13 7.04 45.11 3.01
225 226 3.569250 GAACTTCTGCTCTCGAGTTCT 57.431 47.619 13.13 0.00 42.78 3.01
226 227 4.688511 GAACTTCTGCTCTCGAGTTCTA 57.311 45.455 13.13 0.00 42.78 2.10
227 228 4.658071 GAACTTCTGCTCTCGAGTTCTAG 58.342 47.826 13.13 3.22 42.78 2.43
228 229 3.013921 ACTTCTGCTCTCGAGTTCTAGG 58.986 50.000 13.13 1.82 0.00 3.02
229 230 2.791347 TCTGCTCTCGAGTTCTAGGT 57.209 50.000 13.13 0.00 0.00 3.08
230 231 3.908643 TCTGCTCTCGAGTTCTAGGTA 57.091 47.619 13.13 0.00 0.00 3.08
231 232 3.799366 TCTGCTCTCGAGTTCTAGGTAG 58.201 50.000 13.13 0.44 0.00 3.18
232 233 2.289547 CTGCTCTCGAGTTCTAGGTAGC 59.710 54.545 13.13 11.64 0.00 3.58
233 234 1.262151 GCTCTCGAGTTCTAGGTAGCG 59.738 57.143 13.13 0.00 0.00 4.26
234 235 2.553086 CTCTCGAGTTCTAGGTAGCGT 58.447 52.381 13.13 0.00 0.00 5.07
235 236 3.715495 CTCTCGAGTTCTAGGTAGCGTA 58.285 50.000 13.13 0.00 0.00 4.42
236 237 3.715495 TCTCGAGTTCTAGGTAGCGTAG 58.285 50.000 13.13 0.00 0.00 3.51
237 238 3.131933 TCTCGAGTTCTAGGTAGCGTAGT 59.868 47.826 13.13 0.00 0.00 2.73
238 239 3.452474 TCGAGTTCTAGGTAGCGTAGTC 58.548 50.000 0.00 0.00 0.00 2.59
239 240 3.131933 TCGAGTTCTAGGTAGCGTAGTCT 59.868 47.826 0.00 0.00 0.00 3.24
240 241 3.490526 CGAGTTCTAGGTAGCGTAGTCTC 59.509 52.174 0.00 0.00 0.00 3.36
241 242 4.440880 GAGTTCTAGGTAGCGTAGTCTCA 58.559 47.826 0.00 0.00 31.83 3.27
242 243 5.038651 AGTTCTAGGTAGCGTAGTCTCAT 57.961 43.478 0.00 0.00 0.00 2.90
243 244 4.817464 AGTTCTAGGTAGCGTAGTCTCATG 59.183 45.833 0.00 0.00 0.00 3.07
244 245 3.741249 TCTAGGTAGCGTAGTCTCATGG 58.259 50.000 0.00 0.00 0.00 3.66
245 246 2.730934 AGGTAGCGTAGTCTCATGGA 57.269 50.000 0.00 0.00 0.00 3.41
246 247 2.577700 AGGTAGCGTAGTCTCATGGAG 58.422 52.381 0.00 0.00 0.00 3.86
247 248 2.172930 AGGTAGCGTAGTCTCATGGAGA 59.827 50.000 0.00 0.00 36.22 3.71
248 249 2.550606 GGTAGCGTAGTCTCATGGAGAG 59.449 54.545 0.00 0.00 46.14 3.20
249 250 2.428544 AGCGTAGTCTCATGGAGAGT 57.571 50.000 8.50 8.50 44.98 3.24
250 251 3.562343 AGCGTAGTCTCATGGAGAGTA 57.438 47.619 6.69 6.69 44.98 2.59
251 252 3.472652 AGCGTAGTCTCATGGAGAGTAG 58.527 50.000 10.29 6.96 42.84 2.57
252 253 3.118186 AGCGTAGTCTCATGGAGAGTAGT 60.118 47.826 10.29 0.00 42.84 2.73
253 254 3.628487 GCGTAGTCTCATGGAGAGTAGTT 59.372 47.826 10.29 0.00 42.84 2.24
254 255 4.096682 GCGTAGTCTCATGGAGAGTAGTTT 59.903 45.833 10.29 0.00 42.84 2.66
255 256 5.393243 GCGTAGTCTCATGGAGAGTAGTTTT 60.393 44.000 10.29 0.00 42.84 2.43
256 257 6.183360 GCGTAGTCTCATGGAGAGTAGTTTTA 60.183 42.308 10.29 0.00 42.84 1.52
257 258 7.468906 GCGTAGTCTCATGGAGAGTAGTTTTAT 60.469 40.741 10.29 0.00 42.84 1.40
258 259 8.407064 CGTAGTCTCATGGAGAGTAGTTTTATT 58.593 37.037 10.29 0.00 42.84 1.40
259 260 9.738832 GTAGTCTCATGGAGAGTAGTTTTATTC 57.261 37.037 10.29 0.00 42.84 1.75
260 261 7.787028 AGTCTCATGGAGAGTAGTTTTATTCC 58.213 38.462 1.83 0.00 44.98 3.01
261 262 6.987404 GTCTCATGGAGAGTAGTTTTATTCCC 59.013 42.308 0.00 0.00 44.98 3.97
262 263 6.903534 TCTCATGGAGAGTAGTTTTATTCCCT 59.096 38.462 0.00 0.00 44.98 4.20
263 264 8.065627 TCTCATGGAGAGTAGTTTTATTCCCTA 58.934 37.037 0.00 0.00 44.98 3.53
264 265 8.019656 TCATGGAGAGTAGTTTTATTCCCTAC 57.980 38.462 0.00 0.00 32.96 3.18
265 266 7.844779 TCATGGAGAGTAGTTTTATTCCCTACT 59.155 37.037 0.00 0.00 43.00 2.57
266 267 8.487028 CATGGAGAGTAGTTTTATTCCCTACTT 58.513 37.037 0.00 0.00 41.00 2.24
267 268 9.725206 ATGGAGAGTAGTTTTATTCCCTACTTA 57.275 33.333 0.00 0.00 41.00 2.24
268 269 9.198475 TGGAGAGTAGTTTTATTCCCTACTTAG 57.802 37.037 0.00 0.00 41.00 2.18
269 270 8.640651 GGAGAGTAGTTTTATTCCCTACTTAGG 58.359 40.741 0.00 0.00 41.00 2.69
270 271 8.020777 AGAGTAGTTTTATTCCCTACTTAGGC 57.979 38.462 0.00 0.00 41.00 3.93
271 272 6.814043 AGTAGTTTTATTCCCTACTTAGGCG 58.186 40.000 0.00 0.00 42.26 5.52
272 273 4.449131 AGTTTTATTCCCTACTTAGGCGC 58.551 43.478 0.00 0.00 42.26 6.53
273 274 4.163649 AGTTTTATTCCCTACTTAGGCGCT 59.836 41.667 7.64 0.00 42.26 5.92
274 275 3.746045 TTATTCCCTACTTAGGCGCTG 57.254 47.619 7.64 0.00 42.26 5.18
275 276 1.497161 ATTCCCTACTTAGGCGCTGT 58.503 50.000 7.64 4.22 42.26 4.40
276 277 0.535335 TTCCCTACTTAGGCGCTGTG 59.465 55.000 7.64 0.00 42.26 3.66
277 278 0.323999 TCCCTACTTAGGCGCTGTGA 60.324 55.000 7.64 0.00 42.26 3.58
278 279 0.535335 CCCTACTTAGGCGCTGTGAA 59.465 55.000 7.64 0.00 42.26 3.18
279 280 1.066430 CCCTACTTAGGCGCTGTGAAA 60.066 52.381 7.64 0.00 42.26 2.69
280 281 2.614481 CCCTACTTAGGCGCTGTGAAAA 60.614 50.000 7.64 0.00 42.26 2.29
281 282 3.071479 CCTACTTAGGCGCTGTGAAAAA 58.929 45.455 7.64 0.00 36.53 1.94
282 283 3.120304 CCTACTTAGGCGCTGTGAAAAAC 60.120 47.826 7.64 0.00 36.53 2.43
283 284 2.572290 ACTTAGGCGCTGTGAAAAACT 58.428 42.857 7.64 0.00 0.00 2.66
284 285 2.290641 ACTTAGGCGCTGTGAAAAACTG 59.709 45.455 7.64 0.00 0.00 3.16
285 286 1.234821 TAGGCGCTGTGAAAAACTGG 58.765 50.000 7.64 0.00 0.00 4.00
286 287 0.751643 AGGCGCTGTGAAAAACTGGT 60.752 50.000 7.64 0.00 0.00 4.00
287 288 0.102300 GGCGCTGTGAAAAACTGGTT 59.898 50.000 7.64 0.00 0.00 3.67
288 289 1.199624 GCGCTGTGAAAAACTGGTTG 58.800 50.000 0.00 0.00 0.00 3.77
289 290 1.469079 GCGCTGTGAAAAACTGGTTGT 60.469 47.619 0.00 0.00 0.00 3.32
290 291 2.184448 CGCTGTGAAAAACTGGTTGTG 58.816 47.619 0.00 0.00 0.00 3.33
291 292 2.159448 CGCTGTGAAAAACTGGTTGTGA 60.159 45.455 0.00 0.00 0.00 3.58
292 293 3.179048 GCTGTGAAAAACTGGTTGTGAC 58.821 45.455 0.00 0.00 0.00 3.67
293 294 3.119495 GCTGTGAAAAACTGGTTGTGACT 60.119 43.478 0.00 0.00 0.00 3.41
294 295 4.414852 CTGTGAAAAACTGGTTGTGACTG 58.585 43.478 0.00 0.00 0.00 3.51
295 296 3.179048 GTGAAAAACTGGTTGTGACTGC 58.821 45.455 0.00 0.00 0.00 4.40
296 297 3.088532 TGAAAAACTGGTTGTGACTGCT 58.911 40.909 0.00 0.00 0.00 4.24
297 298 3.509575 TGAAAAACTGGTTGTGACTGCTT 59.490 39.130 0.00 0.00 0.00 3.91
298 299 4.021544 TGAAAAACTGGTTGTGACTGCTTT 60.022 37.500 0.00 0.00 0.00 3.51
299 300 5.184096 TGAAAAACTGGTTGTGACTGCTTTA 59.816 36.000 0.00 0.00 0.00 1.85
300 301 5.852282 AAAACTGGTTGTGACTGCTTTAT 57.148 34.783 0.00 0.00 0.00 1.40
301 302 5.438761 AAACTGGTTGTGACTGCTTTATC 57.561 39.130 0.00 0.00 0.00 1.75
302 303 4.357918 ACTGGTTGTGACTGCTTTATCT 57.642 40.909 0.00 0.00 0.00 1.98
303 304 4.067896 ACTGGTTGTGACTGCTTTATCTG 58.932 43.478 0.00 0.00 0.00 2.90
304 305 2.813754 TGGTTGTGACTGCTTTATCTGC 59.186 45.455 0.00 0.00 0.00 4.26
305 306 3.077359 GGTTGTGACTGCTTTATCTGCT 58.923 45.455 0.00 0.00 0.00 4.24
306 307 3.503748 GGTTGTGACTGCTTTATCTGCTT 59.496 43.478 0.00 0.00 0.00 3.91
307 308 4.378874 GGTTGTGACTGCTTTATCTGCTTC 60.379 45.833 0.00 0.00 0.00 3.86
308 309 2.995939 TGTGACTGCTTTATCTGCTTCG 59.004 45.455 0.00 0.00 0.00 3.79
309 310 3.254060 GTGACTGCTTTATCTGCTTCGA 58.746 45.455 0.00 0.00 0.00 3.71
310 311 3.868077 GTGACTGCTTTATCTGCTTCGAT 59.132 43.478 0.00 0.00 0.00 3.59
311 312 4.026145 GTGACTGCTTTATCTGCTTCGATC 60.026 45.833 0.00 0.00 0.00 3.69
312 313 4.142071 TGACTGCTTTATCTGCTTCGATCT 60.142 41.667 0.00 0.00 0.00 2.75
313 314 5.067805 TGACTGCTTTATCTGCTTCGATCTA 59.932 40.000 0.00 0.00 0.00 1.98
314 315 6.095432 ACTGCTTTATCTGCTTCGATCTAT 57.905 37.500 0.00 0.00 0.00 1.98
315 316 7.040409 TGACTGCTTTATCTGCTTCGATCTATA 60.040 37.037 0.00 0.00 0.00 1.31
316 317 7.661968 ACTGCTTTATCTGCTTCGATCTATAA 58.338 34.615 0.00 0.00 0.00 0.98
317 318 8.144478 ACTGCTTTATCTGCTTCGATCTATAAA 58.856 33.333 0.00 0.00 0.00 1.40
318 319 8.887036 TGCTTTATCTGCTTCGATCTATAAAA 57.113 30.769 0.00 0.00 0.00 1.52
319 320 9.494271 TGCTTTATCTGCTTCGATCTATAAAAT 57.506 29.630 0.00 0.00 0.00 1.82
323 324 7.678947 ATCTGCTTCGATCTATAAAATTGGG 57.321 36.000 0.00 0.00 0.00 4.12
324 325 5.997746 TCTGCTTCGATCTATAAAATTGGGG 59.002 40.000 0.00 0.00 0.00 4.96
325 326 4.518970 TGCTTCGATCTATAAAATTGGGGC 59.481 41.667 0.00 0.00 0.00 5.80
326 327 4.518970 GCTTCGATCTATAAAATTGGGGCA 59.481 41.667 0.00 0.00 0.00 5.36
327 328 5.335191 GCTTCGATCTATAAAATTGGGGCAG 60.335 44.000 0.00 0.00 0.00 4.85
328 329 4.651778 TCGATCTATAAAATTGGGGCAGG 58.348 43.478 0.00 0.00 0.00 4.85
329 330 3.758554 CGATCTATAAAATTGGGGCAGGG 59.241 47.826 0.00 0.00 0.00 4.45
330 331 3.611025 TCTATAAAATTGGGGCAGGGG 57.389 47.619 0.00 0.00 0.00 4.79
331 332 2.178984 TCTATAAAATTGGGGCAGGGGG 59.821 50.000 0.00 0.00 0.00 5.40
491 492 3.904136 AGTTTGACTTTGAAGATGCGG 57.096 42.857 0.00 0.00 0.00 5.69
492 493 3.476552 AGTTTGACTTTGAAGATGCGGA 58.523 40.909 0.00 0.00 0.00 5.54
493 494 3.499918 AGTTTGACTTTGAAGATGCGGAG 59.500 43.478 0.00 0.00 0.00 4.63
494 495 2.839486 TGACTTTGAAGATGCGGAGT 57.161 45.000 0.00 0.00 0.00 3.85
495 496 3.953712 TGACTTTGAAGATGCGGAGTA 57.046 42.857 0.00 0.00 0.00 2.59
496 497 4.265904 TGACTTTGAAGATGCGGAGTAA 57.734 40.909 0.00 0.00 0.00 2.24
497 498 4.637276 TGACTTTGAAGATGCGGAGTAAA 58.363 39.130 0.00 0.00 0.00 2.01
498 499 5.245531 TGACTTTGAAGATGCGGAGTAAAT 58.754 37.500 0.00 0.00 0.00 1.40
499 500 6.403049 TGACTTTGAAGATGCGGAGTAAATA 58.597 36.000 0.00 0.00 0.00 1.40
500 501 6.876789 TGACTTTGAAGATGCGGAGTAAATAA 59.123 34.615 0.00 0.00 0.00 1.40
501 502 7.389330 TGACTTTGAAGATGCGGAGTAAATAAA 59.611 33.333 0.00 0.00 0.00 1.40
502 503 8.106247 ACTTTGAAGATGCGGAGTAAATAAAA 57.894 30.769 0.00 0.00 0.00 1.52
503 504 8.573035 ACTTTGAAGATGCGGAGTAAATAAAAA 58.427 29.630 0.00 0.00 0.00 1.94
504 505 8.736751 TTTGAAGATGCGGAGTAAATAAAAAC 57.263 30.769 0.00 0.00 0.00 2.43
505 506 7.441890 TGAAGATGCGGAGTAAATAAAAACA 57.558 32.000 0.00 0.00 0.00 2.83
506 507 7.526608 TGAAGATGCGGAGTAAATAAAAACAG 58.473 34.615 0.00 0.00 0.00 3.16
507 508 7.389330 TGAAGATGCGGAGTAAATAAAAACAGA 59.611 33.333 0.00 0.00 0.00 3.41
508 509 7.308782 AGATGCGGAGTAAATAAAAACAGAG 57.691 36.000 0.00 0.00 0.00 3.35
509 510 7.103641 AGATGCGGAGTAAATAAAAACAGAGA 58.896 34.615 0.00 0.00 0.00 3.10
510 511 6.721571 TGCGGAGTAAATAAAAACAGAGAG 57.278 37.500 0.00 0.00 0.00 3.20
511 512 6.460781 TGCGGAGTAAATAAAAACAGAGAGA 58.539 36.000 0.00 0.00 0.00 3.10
696 701 3.667282 GCACAGGCACAGGCACAG 61.667 66.667 0.00 0.00 43.71 3.66
697 702 3.667282 CACAGGCACAGGCACAGC 61.667 66.667 0.00 0.00 43.71 4.40
698 703 4.193893 ACAGGCACAGGCACAGCA 62.194 61.111 0.00 0.00 43.71 4.41
699 704 3.362797 CAGGCACAGGCACAGCAG 61.363 66.667 0.00 0.00 43.71 4.24
785 2174 0.380378 GCTCGTAGCTGTCTCTCCTG 59.620 60.000 0.00 0.00 38.45 3.86
810 2199 1.984570 CGCACAAGAGGGAGGGAGA 60.985 63.158 0.00 0.00 0.00 3.71
811 2200 1.904032 GCACAAGAGGGAGGGAGAG 59.096 63.158 0.00 0.00 0.00 3.20
812 2201 1.621672 GCACAAGAGGGAGGGAGAGG 61.622 65.000 0.00 0.00 0.00 3.69
813 2202 1.306568 ACAAGAGGGAGGGAGAGGC 60.307 63.158 0.00 0.00 0.00 4.70
814 2203 2.069430 CAAGAGGGAGGGAGAGGCC 61.069 68.421 0.00 0.00 0.00 5.19
833 2227 1.072159 GCCCTGGCTGCGAGATTAT 59.928 57.895 13.55 0.00 38.26 1.28
840 2234 1.413382 GCTGCGAGATTATCACGAGG 58.587 55.000 15.54 7.95 32.24 4.63
890 2292 0.255318 GGTCTCCCTCCTCGTCACTA 59.745 60.000 0.00 0.00 0.00 2.74
982 2411 3.693578 CCATTTCTTCCTTCTCTTGCTCC 59.306 47.826 0.00 0.00 0.00 4.70
1296 2763 8.739972 GGTTCATTTTGAGGTCAGTTATACAAT 58.260 33.333 0.00 0.00 0.00 2.71
1299 2766 8.106462 TCATTTTGAGGTCAGTTATACAATCCA 58.894 33.333 0.00 0.00 0.00 3.41
1302 2769 6.222038 TGAGGTCAGTTATACAATCCACTC 57.778 41.667 0.00 0.00 0.00 3.51
1304 2771 4.409247 AGGTCAGTTATACAATCCACTCCC 59.591 45.833 0.00 0.00 0.00 4.30
1305 2772 4.369182 GTCAGTTATACAATCCACTCCCG 58.631 47.826 0.00 0.00 0.00 5.14
1306 2773 4.098960 GTCAGTTATACAATCCACTCCCGA 59.901 45.833 0.00 0.00 0.00 5.14
1307 2774 4.098960 TCAGTTATACAATCCACTCCCGAC 59.901 45.833 0.00 0.00 0.00 4.79
1308 2775 4.028131 AGTTATACAATCCACTCCCGACA 58.972 43.478 0.00 0.00 0.00 4.35
1330 2804 3.887716 ACCGGAGCACGTATAGAATAGTT 59.112 43.478 9.46 0.00 42.24 2.24
1352 2830 1.968540 GCCAAGGAACGCTCAGCTT 60.969 57.895 0.00 0.00 0.00 3.74
1531 3012 4.019591 AGGTATACTTCAGTTTCACCACCC 60.020 45.833 2.25 0.00 0.00 4.61
1545 3026 0.819259 CCACCCGGCCATCACATAAG 60.819 60.000 2.24 0.00 0.00 1.73
1656 3174 3.488310 GTGCACTGCAATTTGACAAAGAG 59.512 43.478 10.32 2.74 41.47 2.85
1700 3218 3.524606 CGGGTCCGGTACTGCGAT 61.525 66.667 0.00 0.00 35.56 4.58
1719 3237 2.357034 GCTCGTCTTTCACCGGCA 60.357 61.111 0.00 0.00 0.00 5.69
1760 3278 0.543277 TGAGCCCATACTCCAAGCTG 59.457 55.000 0.00 0.00 35.72 4.24
1811 3331 1.468914 GCCGGTCTGAATTGAGGTTTC 59.531 52.381 1.90 0.00 0.00 2.78
1815 3335 3.187227 CGGTCTGAATTGAGGTTTCTGTG 59.813 47.826 0.00 0.00 0.00 3.66
1817 3337 4.023707 GGTCTGAATTGAGGTTTCTGTGTG 60.024 45.833 0.00 0.00 0.00 3.82
1969 3700 2.019249 CCTGTGGCATGTGACTAATGG 58.981 52.381 0.00 0.00 0.00 3.16
1994 3725 4.226168 ACTGTAGCAGGCTCTAATTTCCTT 59.774 41.667 0.00 0.00 35.51 3.36
1997 3728 5.661312 TGTAGCAGGCTCTAATTTCCTTCTA 59.339 40.000 0.00 0.00 0.00 2.10
2000 3731 6.667661 AGCAGGCTCTAATTTCCTTCTATTT 58.332 36.000 0.00 0.00 0.00 1.40
2145 3876 6.012658 TGGTTTCTTCATCAATGTGTAAGC 57.987 37.500 0.00 0.00 0.00 3.09
2150 3881 4.696877 TCTTCATCAATGTGTAAGCCAGTG 59.303 41.667 0.00 0.00 0.00 3.66
2201 4650 7.179076 AGGAAAATCATGCTATCTGCTTTTT 57.821 32.000 0.00 0.00 43.37 1.94
2272 5415 9.449719 AATTAGTCCCTTATCTAACACTTTGTG 57.550 33.333 0.00 0.00 39.75 3.33
2310 5453 1.004044 AGGAAGGACATTGCTGGAGTG 59.996 52.381 0.00 0.00 38.30 3.51
2391 5539 7.672983 TTTTACTGCTCTTTCTACCTGATTG 57.327 36.000 0.00 0.00 0.00 2.67
2396 5544 3.126000 GCTCTTTCTACCTGATTGTGTGC 59.874 47.826 0.00 0.00 0.00 4.57
2421 6481 9.045223 GCACATAACTATGAACTATGACATGAA 57.955 33.333 0.00 0.00 37.15 2.57
2594 7163 7.951591 AGTTATGCTGTTTTGAATTGTACCTT 58.048 30.769 0.00 0.00 0.00 3.50
2596 7165 9.040939 GTTATGCTGTTTTGAATTGTACCTTTT 57.959 29.630 0.00 0.00 0.00 2.27
2597 7166 9.606631 TTATGCTGTTTTGAATTGTACCTTTTT 57.393 25.926 0.00 0.00 0.00 1.94
2620 7189 7.668525 TTTTTAAAAAGAGATCGTCCTCTCC 57.331 36.000 9.31 0.00 42.31 3.71
2621 7190 3.512033 AAAAAGAGATCGTCCTCTCCG 57.488 47.619 9.14 0.00 42.31 4.63
2622 7191 2.421751 AAAGAGATCGTCCTCTCCGA 57.578 50.000 9.14 0.00 42.31 4.55
2623 7192 2.649531 AAGAGATCGTCCTCTCCGAT 57.350 50.000 9.14 0.00 46.91 4.18
2624 7193 2.649531 AGAGATCGTCCTCTCCGATT 57.350 50.000 8.21 0.00 44.48 3.34
2625 7194 2.938838 AGAGATCGTCCTCTCCGATTT 58.061 47.619 8.21 0.00 44.48 2.17
2626 7195 2.882137 AGAGATCGTCCTCTCCGATTTC 59.118 50.000 5.50 5.50 44.48 2.17
2627 7196 1.957877 AGATCGTCCTCTCCGATTTCC 59.042 52.381 0.00 0.00 44.48 3.13
2628 7197 1.681793 GATCGTCCTCTCCGATTTCCA 59.318 52.381 0.00 0.00 44.48 3.53
2629 7198 1.776662 TCGTCCTCTCCGATTTCCAT 58.223 50.000 0.00 0.00 0.00 3.41
2630 7199 2.940158 TCGTCCTCTCCGATTTCCATA 58.060 47.619 0.00 0.00 0.00 2.74
2631 7200 3.497332 TCGTCCTCTCCGATTTCCATAT 58.503 45.455 0.00 0.00 0.00 1.78
2632 7201 4.659115 TCGTCCTCTCCGATTTCCATATA 58.341 43.478 0.00 0.00 0.00 0.86
2633 7202 5.262009 TCGTCCTCTCCGATTTCCATATAT 58.738 41.667 0.00 0.00 0.00 0.86
2634 7203 5.357314 TCGTCCTCTCCGATTTCCATATATC 59.643 44.000 0.00 0.00 0.00 1.63
2635 7204 5.125578 CGTCCTCTCCGATTTCCATATATCA 59.874 44.000 0.00 0.00 0.00 2.15
2636 7205 6.568869 GTCCTCTCCGATTTCCATATATCAG 58.431 44.000 0.00 0.00 0.00 2.90
2637 7206 6.378564 GTCCTCTCCGATTTCCATATATCAGA 59.621 42.308 0.00 0.00 0.00 3.27
2638 7207 6.954102 TCCTCTCCGATTTCCATATATCAGAA 59.046 38.462 0.00 0.00 0.00 3.02
2639 7208 7.454694 TCCTCTCCGATTTCCATATATCAGAAA 59.545 37.037 9.00 9.00 34.26 2.52
2640 7209 7.547370 CCTCTCCGATTTCCATATATCAGAAAC 59.453 40.741 8.82 4.58 32.67 2.78
2641 7210 7.386851 TCTCCGATTTCCATATATCAGAAACC 58.613 38.462 8.82 0.97 32.67 3.27
2642 7211 7.016170 TCTCCGATTTCCATATATCAGAAACCA 59.984 37.037 8.82 0.00 32.67 3.67
2643 7212 6.934645 TCCGATTTCCATATATCAGAAACCAC 59.065 38.462 8.82 4.95 32.67 4.16
2644 7213 6.710295 CCGATTTCCATATATCAGAAACCACA 59.290 38.462 8.82 0.00 32.67 4.17
2645 7214 7.095060 CCGATTTCCATATATCAGAAACCACAG 60.095 40.741 8.82 2.22 32.67 3.66
2646 7215 7.442364 CGATTTCCATATATCAGAAACCACAGT 59.558 37.037 8.82 0.00 32.67 3.55
2647 7216 7.864108 TTTCCATATATCAGAAACCACAGTG 57.136 36.000 0.00 0.00 0.00 3.66
2648 7217 6.560003 TCCATATATCAGAAACCACAGTGT 57.440 37.500 0.00 0.00 0.00 3.55
2649 7218 6.582636 TCCATATATCAGAAACCACAGTGTC 58.417 40.000 0.00 0.00 0.00 3.67
2650 7219 5.760253 CCATATATCAGAAACCACAGTGTCC 59.240 44.000 0.00 0.00 29.43 4.02
2651 7220 6.408548 CCATATATCAGAAACCACAGTGTCCT 60.409 42.308 0.00 0.00 29.43 3.85
2652 7221 2.620251 TCAGAAACCACAGTGTCCTG 57.380 50.000 0.00 1.68 44.68 3.86
2666 7235 6.570672 CAGTGTCCTGTAACAACTACTAGA 57.429 41.667 0.00 0.00 33.80 2.43
2667 7236 6.978338 CAGTGTCCTGTAACAACTACTAGAA 58.022 40.000 0.00 0.00 33.80 2.10
2668 7237 7.085116 CAGTGTCCTGTAACAACTACTAGAAG 58.915 42.308 0.00 0.00 33.80 2.85
2669 7238 7.002879 AGTGTCCTGTAACAACTACTAGAAGA 58.997 38.462 0.00 0.00 0.00 2.87
2670 7239 7.504911 AGTGTCCTGTAACAACTACTAGAAGAA 59.495 37.037 0.00 0.00 0.00 2.52
2700 7269 5.637810 CCTGATCGTGTTGTGTACAAATACT 59.362 40.000 0.00 0.00 38.80 2.12
2712 7285 2.185387 ACAAATACTGTAGGGCTCGGT 58.815 47.619 0.00 0.00 36.10 4.69
2811 7395 4.040217 ACATCTAGGGATCAGATTGCACTC 59.960 45.833 0.00 0.00 30.18 3.51
2820 7404 2.237143 TCAGATTGCACTCCCCTTACAG 59.763 50.000 0.00 0.00 0.00 2.74
2981 7589 2.029380 TGACAGTTGACACTACCATCCG 60.029 50.000 0.00 0.00 0.00 4.18
2983 7591 2.832129 ACAGTTGACACTACCATCCGAT 59.168 45.455 0.00 0.00 0.00 4.18
2984 7592 3.119101 ACAGTTGACACTACCATCCGATC 60.119 47.826 0.00 0.00 0.00 3.69
2985 7593 3.096852 AGTTGACACTACCATCCGATCA 58.903 45.455 0.00 0.00 0.00 2.92
2986 7594 3.706594 AGTTGACACTACCATCCGATCAT 59.293 43.478 0.00 0.00 0.00 2.45
2987 7595 4.051922 GTTGACACTACCATCCGATCATC 58.948 47.826 0.00 0.00 0.00 2.92
3006 7626 5.128205 TCATCCATCAAGGCACTAATCTTG 58.872 41.667 0.00 0.00 38.49 3.02
3014 7634 5.105310 TCAAGGCACTAATCTTGGTCTCTAC 60.105 44.000 0.00 0.00 38.49 2.59
3174 7803 2.695666 TGACAGGCTAGCTATGAACCTC 59.304 50.000 22.05 12.23 0.00 3.85
3176 7805 2.697751 ACAGGCTAGCTATGAACCTCTG 59.302 50.000 22.05 15.83 0.00 3.35
3177 7806 2.697751 CAGGCTAGCTATGAACCTCTGT 59.302 50.000 15.72 0.00 0.00 3.41
3178 7807 2.697751 AGGCTAGCTATGAACCTCTGTG 59.302 50.000 15.72 0.00 0.00 3.66
3179 7808 2.432510 GGCTAGCTATGAACCTCTGTGT 59.567 50.000 15.72 0.00 0.00 3.72
3180 7809 3.452474 GCTAGCTATGAACCTCTGTGTG 58.548 50.000 7.70 0.00 0.00 3.82
3181 7810 3.118956 GCTAGCTATGAACCTCTGTGTGT 60.119 47.826 7.70 0.00 0.00 3.72
3182 7811 4.621747 GCTAGCTATGAACCTCTGTGTGTT 60.622 45.833 7.70 0.00 0.00 3.32
3183 7812 5.394224 GCTAGCTATGAACCTCTGTGTGTTA 60.394 44.000 7.70 0.00 0.00 2.41
3184 7813 5.683876 AGCTATGAACCTCTGTGTGTTAT 57.316 39.130 0.00 0.00 0.00 1.89
3224 7870 3.632604 CCTGTGTATACTCACCGACAGAT 59.367 47.826 16.37 0.00 37.51 2.90
3272 7918 1.078214 CCTGGAAGCAATCGAGGCA 60.078 57.895 13.53 0.00 45.59 4.75
3410 8056 1.261238 CCCTCGCCCTCTTCTCTTGT 61.261 60.000 0.00 0.00 0.00 3.16
3426 8072 2.734606 TCTTGTACCGCTGAATTTCGTG 59.265 45.455 0.00 0.00 0.00 4.35
3504 8150 2.446435 GAGAGCTCCTTCTGTCTCACT 58.554 52.381 10.93 0.00 36.29 3.41
3505 8151 2.423538 GAGAGCTCCTTCTGTCTCACTC 59.576 54.545 10.93 0.00 36.29 3.51
3536 8182 1.366111 GAATAGCAAGCGCGGTTGGA 61.366 55.000 41.23 15.89 45.49 3.53
3558 8204 2.047560 GGTTCTACGGCCGCAGTT 60.048 61.111 28.58 8.43 0.00 3.16
3643 8289 2.310233 ACACGTAGCAAGTGCAGCG 61.310 57.895 14.78 14.78 45.16 5.18
3665 8311 2.783333 CCTCGCTTCGTACTACTGTTC 58.217 52.381 0.00 0.00 0.00 3.18
3942 8604 4.542075 GCTAAGCTAGCCACACCC 57.458 61.111 12.13 0.00 45.95 4.61
4105 8768 2.702898 TGCACAAATGAACACCATCG 57.297 45.000 0.00 0.00 33.53 3.84
4146 8809 3.953542 AGACCAAAGAAACCCTTGAGT 57.046 42.857 0.00 0.00 34.79 3.41
4148 8811 4.207955 AGACCAAAGAAACCCTTGAGTTC 58.792 43.478 0.00 0.00 34.79 3.01
4157 8820 1.286553 ACCCTTGAGTTCCACACCAAA 59.713 47.619 0.00 0.00 0.00 3.28
4161 8824 1.282875 GAGTTCCACACCAAAGCGC 59.717 57.895 0.00 0.00 0.00 5.92
4162 8825 1.444119 GAGTTCCACACCAAAGCGCA 61.444 55.000 11.47 0.00 0.00 6.09
4213 8888 3.721087 AAATTGACGGATCACCTCCTT 57.279 42.857 0.00 0.00 42.47 3.36
4256 8931 6.512297 TCTATCGTTGATATGCAGCTTTACA 58.488 36.000 0.00 0.00 0.00 2.41
4269 8944 4.700213 GCAGCTTTACAAACCTCCAAGATA 59.300 41.667 0.00 0.00 0.00 1.98
4279 8957 7.177878 ACAAACCTCCAAGATAACTCATCAAT 58.822 34.615 0.00 0.00 35.96 2.57
4298 8976 1.212751 GGTGAAGCCATTGCCGTTC 59.787 57.895 0.00 0.00 38.69 3.95
4305 8983 1.001745 GCCATTGCCGTTCAACGAAC 61.002 55.000 12.68 3.54 46.05 3.95
4314 8992 0.249573 GTTCAACGAACCAGACCGGA 60.250 55.000 9.46 0.00 36.65 5.14
4322 9000 2.738521 CCAGACCGGAGCAACACG 60.739 66.667 9.46 0.00 36.56 4.49
4435 9117 2.627515 ACATGATCCACCATCTTCCG 57.372 50.000 0.00 0.00 31.92 4.30
4466 9148 3.679025 CGTTGCATACCACAATTTGCATT 59.321 39.130 1.33 0.00 43.91 3.56
4467 9149 4.152045 CGTTGCATACCACAATTTGCATTT 59.848 37.500 1.33 0.00 43.91 2.32
4469 9151 4.639334 TGCATACCACAATTTGCATTTGT 58.361 34.783 9.16 9.16 39.98 2.83
4470 9152 5.061853 TGCATACCACAATTTGCATTTGTT 58.938 33.333 11.64 3.54 39.98 2.83
4471 9153 5.178996 TGCATACCACAATTTGCATTTGTTC 59.821 36.000 11.64 1.42 39.98 3.18
4602 9285 3.131046 CCTTGCTTGAACAGACTGGTTTT 59.869 43.478 7.51 0.00 0.00 2.43
4612 9295 7.555087 TGAACAGACTGGTTTTCAAATTCATT 58.445 30.769 7.51 0.00 0.00 2.57
4616 9299 4.881920 ACTGGTTTTCAAATTCATTCCCG 58.118 39.130 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.364901 CACCTTTGCAGCAGGGTTG 59.635 57.895 16.59 10.33 35.46 3.77
14 15 3.860681 CACCTTTGCAGCAGGGTT 58.139 55.556 16.59 3.58 35.46 4.11
28 29 1.168714 GTCCAACAGAAGGATGCACC 58.831 55.000 0.00 0.00 37.52 5.01
29 30 1.896220 TGTCCAACAGAAGGATGCAC 58.104 50.000 0.00 0.00 37.52 4.57
30 31 2.507484 CTTGTCCAACAGAAGGATGCA 58.493 47.619 0.00 0.00 37.52 3.96
31 32 1.200948 GCTTGTCCAACAGAAGGATGC 59.799 52.381 0.00 0.00 37.52 3.91
32 33 1.466167 CGCTTGTCCAACAGAAGGATG 59.534 52.381 0.00 0.00 37.52 3.51
33 34 1.347707 TCGCTTGTCCAACAGAAGGAT 59.652 47.619 0.00 0.00 37.52 3.24
34 35 0.756294 TCGCTTGTCCAACAGAAGGA 59.244 50.000 0.00 0.00 0.00 3.36
35 36 0.868406 GTCGCTTGTCCAACAGAAGG 59.132 55.000 0.00 0.00 0.00 3.46
36 37 0.508641 CGTCGCTTGTCCAACAGAAG 59.491 55.000 0.00 0.00 0.00 2.85
37 38 0.179094 ACGTCGCTTGTCCAACAGAA 60.179 50.000 0.00 0.00 0.00 3.02
38 39 0.874175 CACGTCGCTTGTCCAACAGA 60.874 55.000 0.00 0.00 0.00 3.41
39 40 1.564622 CACGTCGCTTGTCCAACAG 59.435 57.895 0.00 0.00 0.00 3.16
40 41 1.885388 CCACGTCGCTTGTCCAACA 60.885 57.895 0.00 0.00 0.00 3.33
41 42 1.557443 CTCCACGTCGCTTGTCCAAC 61.557 60.000 0.00 0.00 0.00 3.77
42 43 1.300620 CTCCACGTCGCTTGTCCAA 60.301 57.895 0.00 0.00 0.00 3.53
43 44 1.740332 TTCTCCACGTCGCTTGTCCA 61.740 55.000 0.00 0.00 0.00 4.02
44 45 0.389948 ATTCTCCACGTCGCTTGTCC 60.390 55.000 0.00 0.00 0.00 4.02
45 46 1.126846 CAATTCTCCACGTCGCTTGTC 59.873 52.381 0.00 0.00 0.00 3.18
46 47 1.148310 CAATTCTCCACGTCGCTTGT 58.852 50.000 0.00 0.00 0.00 3.16
47 48 1.428448 TCAATTCTCCACGTCGCTTG 58.572 50.000 0.00 0.00 0.00 4.01
48 49 2.002586 CATCAATTCTCCACGTCGCTT 58.997 47.619 0.00 0.00 0.00 4.68
49 50 1.645034 CATCAATTCTCCACGTCGCT 58.355 50.000 0.00 0.00 0.00 4.93
50 51 0.026803 GCATCAATTCTCCACGTCGC 59.973 55.000 0.00 0.00 0.00 5.19
51 52 0.298707 CGCATCAATTCTCCACGTCG 59.701 55.000 0.00 0.00 0.00 5.12
52 53 0.652592 CCGCATCAATTCTCCACGTC 59.347 55.000 0.00 0.00 0.00 4.34
53 54 0.249120 TCCGCATCAATTCTCCACGT 59.751 50.000 0.00 0.00 0.00 4.49
54 55 1.528586 GATCCGCATCAATTCTCCACG 59.471 52.381 0.00 0.00 0.00 4.94
55 56 1.528586 CGATCCGCATCAATTCTCCAC 59.471 52.381 0.00 0.00 0.00 4.02
56 57 1.869774 CGATCCGCATCAATTCTCCA 58.130 50.000 0.00 0.00 0.00 3.86
69 70 1.227089 CTCACTTCCAGGCGATCCG 60.227 63.158 0.00 0.00 37.47 4.18
70 71 1.144936 CCTCACTTCCAGGCGATCC 59.855 63.158 0.00 0.00 0.00 3.36
71 72 0.460987 CACCTCACTTCCAGGCGATC 60.461 60.000 0.00 0.00 33.84 3.69
72 73 1.194781 ACACCTCACTTCCAGGCGAT 61.195 55.000 0.00 0.00 33.84 4.58
73 74 1.837051 ACACCTCACTTCCAGGCGA 60.837 57.895 0.00 0.00 33.84 5.54
74 75 1.669115 CACACCTCACTTCCAGGCG 60.669 63.158 0.00 0.00 33.84 5.52
75 76 1.302832 CCACACCTCACTTCCAGGC 60.303 63.158 0.00 0.00 33.84 4.85
76 77 1.127567 TCCCACACCTCACTTCCAGG 61.128 60.000 0.00 0.00 37.03 4.45
77 78 0.322975 CTCCCACACCTCACTTCCAG 59.677 60.000 0.00 0.00 0.00 3.86
78 79 1.127567 CCTCCCACACCTCACTTCCA 61.128 60.000 0.00 0.00 0.00 3.53
79 80 1.679898 CCTCCCACACCTCACTTCC 59.320 63.158 0.00 0.00 0.00 3.46
80 81 1.679898 CCCTCCCACACCTCACTTC 59.320 63.158 0.00 0.00 0.00 3.01
81 82 1.847968 CCCCTCCCACACCTCACTT 60.848 63.158 0.00 0.00 0.00 3.16
82 83 2.203998 CCCCTCCCACACCTCACT 60.204 66.667 0.00 0.00 0.00 3.41
83 84 2.203938 TCCCCTCCCACACCTCAC 60.204 66.667 0.00 0.00 0.00 3.51
84 85 2.122729 CTCCCCTCCCACACCTCA 59.877 66.667 0.00 0.00 0.00 3.86
85 86 3.403558 GCTCCCCTCCCACACCTC 61.404 72.222 0.00 0.00 0.00 3.85
86 87 3.586225 ATGCTCCCCTCCCACACCT 62.586 63.158 0.00 0.00 0.00 4.00
87 88 3.017581 ATGCTCCCCTCCCACACC 61.018 66.667 0.00 0.00 0.00 4.16
88 89 2.262774 CTCATGCTCCCCTCCCACAC 62.263 65.000 0.00 0.00 0.00 3.82
89 90 1.997311 CTCATGCTCCCCTCCCACA 60.997 63.158 0.00 0.00 0.00 4.17
90 91 2.750657 CCTCATGCTCCCCTCCCAC 61.751 68.421 0.00 0.00 0.00 4.61
91 92 2.367377 CCTCATGCTCCCCTCCCA 60.367 66.667 0.00 0.00 0.00 4.37
92 93 3.174265 CCCTCATGCTCCCCTCCC 61.174 72.222 0.00 0.00 0.00 4.30
93 94 3.174265 CCCCTCATGCTCCCCTCC 61.174 72.222 0.00 0.00 0.00 4.30
94 95 3.174265 CCCCCTCATGCTCCCCTC 61.174 72.222 0.00 0.00 0.00 4.30
108 109 2.987355 TTTTTCCACTGGTCGCCCCC 62.987 60.000 0.00 0.00 0.00 5.40
109 110 0.898326 ATTTTTCCACTGGTCGCCCC 60.898 55.000 0.00 0.00 0.00 5.80
110 111 0.526211 GATTTTTCCACTGGTCGCCC 59.474 55.000 0.00 0.00 0.00 6.13
111 112 1.534729 AGATTTTTCCACTGGTCGCC 58.465 50.000 0.00 0.00 0.00 5.54
112 113 3.001330 CGATAGATTTTTCCACTGGTCGC 59.999 47.826 0.00 0.00 39.76 5.19
113 114 4.181578 ACGATAGATTTTTCCACTGGTCG 58.818 43.478 0.00 0.00 41.38 4.79
114 115 5.411669 ACAACGATAGATTTTTCCACTGGTC 59.588 40.000 0.00 0.00 41.38 4.02
115 116 5.313712 ACAACGATAGATTTTTCCACTGGT 58.686 37.500 0.00 0.00 41.38 4.00
116 117 5.880054 ACAACGATAGATTTTTCCACTGG 57.120 39.130 0.00 0.00 41.38 4.00
117 118 6.314784 GGAACAACGATAGATTTTTCCACTG 58.685 40.000 0.00 0.00 36.67 3.66
118 119 5.414765 GGGAACAACGATAGATTTTTCCACT 59.585 40.000 5.34 0.00 37.52 4.00
119 120 5.414765 AGGGAACAACGATAGATTTTTCCAC 59.585 40.000 5.34 0.00 37.52 4.02
120 121 5.566469 AGGGAACAACGATAGATTTTTCCA 58.434 37.500 5.34 0.00 37.52 3.53
121 122 6.510879 AAGGGAACAACGATAGATTTTTCC 57.489 37.500 0.00 0.00 36.30 3.13
122 123 7.027760 GGAAAGGGAACAACGATAGATTTTTC 58.972 38.462 0.00 0.00 41.38 2.29
123 124 6.719829 AGGAAAGGGAACAACGATAGATTTTT 59.280 34.615 0.00 0.00 41.38 1.94
124 125 6.246163 AGGAAAGGGAACAACGATAGATTTT 58.754 36.000 0.00 0.00 41.38 1.82
125 126 5.816682 AGGAAAGGGAACAACGATAGATTT 58.183 37.500 0.00 0.00 41.38 2.17
126 127 5.437191 AGGAAAGGGAACAACGATAGATT 57.563 39.130 0.00 0.00 41.38 2.40
127 128 5.189934 AGAAGGAAAGGGAACAACGATAGAT 59.810 40.000 0.00 0.00 41.38 1.98
128 129 4.530946 AGAAGGAAAGGGAACAACGATAGA 59.469 41.667 0.00 0.00 41.38 1.98
129 130 4.631813 CAGAAGGAAAGGGAACAACGATAG 59.368 45.833 0.00 0.00 46.19 2.08
130 131 4.285003 TCAGAAGGAAAGGGAACAACGATA 59.715 41.667 0.00 0.00 0.00 2.92
131 132 3.072476 TCAGAAGGAAAGGGAACAACGAT 59.928 43.478 0.00 0.00 0.00 3.73
132 133 2.436542 TCAGAAGGAAAGGGAACAACGA 59.563 45.455 0.00 0.00 0.00 3.85
133 134 2.846193 TCAGAAGGAAAGGGAACAACG 58.154 47.619 0.00 0.00 0.00 4.10
134 135 4.022849 CACATCAGAAGGAAAGGGAACAAC 60.023 45.833 0.00 0.00 0.00 3.32
135 136 4.144297 CACATCAGAAGGAAAGGGAACAA 58.856 43.478 0.00 0.00 0.00 2.83
136 137 3.498481 CCACATCAGAAGGAAAGGGAACA 60.498 47.826 0.00 0.00 0.00 3.18
137 138 3.084786 CCACATCAGAAGGAAAGGGAAC 58.915 50.000 0.00 0.00 0.00 3.62
138 139 2.555227 GCCACATCAGAAGGAAAGGGAA 60.555 50.000 0.00 0.00 0.00 3.97
139 140 1.004745 GCCACATCAGAAGGAAAGGGA 59.995 52.381 0.00 0.00 0.00 4.20
140 141 1.005215 AGCCACATCAGAAGGAAAGGG 59.995 52.381 0.00 0.00 0.00 3.95
141 142 2.503895 AGCCACATCAGAAGGAAAGG 57.496 50.000 0.00 0.00 0.00 3.11
142 143 4.521146 ACATAGCCACATCAGAAGGAAAG 58.479 43.478 0.00 0.00 0.00 2.62
143 144 4.574674 ACATAGCCACATCAGAAGGAAA 57.425 40.909 0.00 0.00 0.00 3.13
144 145 5.692115 TTACATAGCCACATCAGAAGGAA 57.308 39.130 0.00 0.00 0.00 3.36
145 146 5.894298 ATTACATAGCCACATCAGAAGGA 57.106 39.130 0.00 0.00 0.00 3.36
146 147 9.725019 TTATTATTACATAGCCACATCAGAAGG 57.275 33.333 0.00 0.00 0.00 3.46
171 172 9.751542 CATAACAGGAACGAAATCTAGATACTT 57.248 33.333 5.46 0.00 0.00 2.24
172 173 8.915036 ACATAACAGGAACGAAATCTAGATACT 58.085 33.333 5.46 0.00 0.00 2.12
173 174 9.530633 AACATAACAGGAACGAAATCTAGATAC 57.469 33.333 5.46 2.89 0.00 2.24
174 175 9.529325 CAACATAACAGGAACGAAATCTAGATA 57.471 33.333 5.46 0.00 0.00 1.98
175 176 7.495934 CCAACATAACAGGAACGAAATCTAGAT 59.504 37.037 0.00 0.00 0.00 1.98
176 177 6.816640 CCAACATAACAGGAACGAAATCTAGA 59.183 38.462 0.00 0.00 0.00 2.43
177 178 6.816640 TCCAACATAACAGGAACGAAATCTAG 59.183 38.462 0.00 0.00 0.00 2.43
178 179 6.703319 TCCAACATAACAGGAACGAAATCTA 58.297 36.000 0.00 0.00 0.00 1.98
179 180 5.556915 TCCAACATAACAGGAACGAAATCT 58.443 37.500 0.00 0.00 0.00 2.40
180 181 5.642063 TCTCCAACATAACAGGAACGAAATC 59.358 40.000 0.00 0.00 0.00 2.17
181 182 5.556915 TCTCCAACATAACAGGAACGAAAT 58.443 37.500 0.00 0.00 0.00 2.17
182 183 4.963373 TCTCCAACATAACAGGAACGAAA 58.037 39.130 0.00 0.00 0.00 3.46
183 184 4.282449 TCTCTCCAACATAACAGGAACGAA 59.718 41.667 0.00 0.00 0.00 3.85
184 185 3.830178 TCTCTCCAACATAACAGGAACGA 59.170 43.478 0.00 0.00 0.00 3.85
185 186 4.188247 TCTCTCCAACATAACAGGAACG 57.812 45.455 0.00 0.00 0.00 3.95
186 187 5.552178 AGTTCTCTCCAACATAACAGGAAC 58.448 41.667 0.00 0.00 0.00 3.62
187 188 5.825593 AGTTCTCTCCAACATAACAGGAA 57.174 39.130 0.00 0.00 0.00 3.36
188 189 5.544176 AGAAGTTCTCTCCAACATAACAGGA 59.456 40.000 0.00 0.00 0.00 3.86
189 190 5.641209 CAGAAGTTCTCTCCAACATAACAGG 59.359 44.000 1.26 0.00 29.07 4.00
190 191 5.121454 GCAGAAGTTCTCTCCAACATAACAG 59.879 44.000 1.26 0.00 29.07 3.16
191 192 4.997395 GCAGAAGTTCTCTCCAACATAACA 59.003 41.667 1.26 0.00 29.07 2.41
192 193 5.241662 AGCAGAAGTTCTCTCCAACATAAC 58.758 41.667 1.26 0.00 29.07 1.89
193 194 5.247110 AGAGCAGAAGTTCTCTCCAACATAA 59.753 40.000 19.93 0.00 34.83 1.90
194 195 4.774726 AGAGCAGAAGTTCTCTCCAACATA 59.225 41.667 19.93 0.00 34.83 2.29
195 196 3.582208 AGAGCAGAAGTTCTCTCCAACAT 59.418 43.478 19.93 6.84 34.83 2.71
196 197 2.968574 AGAGCAGAAGTTCTCTCCAACA 59.031 45.455 19.93 0.00 34.83 3.33
197 198 3.584834 GAGAGCAGAAGTTCTCTCCAAC 58.415 50.000 19.93 12.70 45.46 3.77
198 199 3.951775 GAGAGCAGAAGTTCTCTCCAA 57.048 47.619 19.93 0.00 45.46 3.53
201 202 2.747446 ACTCGAGAGCAGAAGTTCTCTC 59.253 50.000 21.68 17.65 46.37 3.20
202 203 2.790433 ACTCGAGAGCAGAAGTTCTCT 58.210 47.619 21.68 3.57 46.37 3.10
203 204 3.190535 AGAACTCGAGAGCAGAAGTTCTC 59.809 47.826 21.68 0.00 45.46 2.87
204 205 3.153919 AGAACTCGAGAGCAGAAGTTCT 58.846 45.455 21.68 12.71 40.44 3.01
205 206 3.569250 AGAACTCGAGAGCAGAAGTTC 57.431 47.619 21.68 10.50 36.77 3.01
206 207 3.442273 CCTAGAACTCGAGAGCAGAAGTT 59.558 47.826 21.68 0.00 0.00 2.66
207 208 3.013921 CCTAGAACTCGAGAGCAGAAGT 58.986 50.000 21.68 0.00 0.00 3.01
208 209 3.013921 ACCTAGAACTCGAGAGCAGAAG 58.986 50.000 21.68 8.19 0.00 2.85
209 210 3.074675 ACCTAGAACTCGAGAGCAGAA 57.925 47.619 21.68 0.00 0.00 3.02
210 211 2.791347 ACCTAGAACTCGAGAGCAGA 57.209 50.000 21.68 0.00 0.00 4.26
211 212 2.289547 GCTACCTAGAACTCGAGAGCAG 59.710 54.545 21.68 9.95 0.00 4.24
212 213 2.290464 GCTACCTAGAACTCGAGAGCA 58.710 52.381 21.68 0.00 0.00 4.26
213 214 1.262151 CGCTACCTAGAACTCGAGAGC 59.738 57.143 21.68 13.66 0.00 4.09
214 215 2.553086 ACGCTACCTAGAACTCGAGAG 58.447 52.381 21.68 5.58 0.00 3.20
215 216 2.687700 ACGCTACCTAGAACTCGAGA 57.312 50.000 21.68 0.00 0.00 4.04
216 217 3.456280 ACTACGCTACCTAGAACTCGAG 58.544 50.000 11.84 11.84 0.00 4.04
217 218 3.131933 AGACTACGCTACCTAGAACTCGA 59.868 47.826 0.00 0.00 0.00 4.04
218 219 3.456280 AGACTACGCTACCTAGAACTCG 58.544 50.000 0.00 0.00 0.00 4.18
219 220 4.440880 TGAGACTACGCTACCTAGAACTC 58.559 47.826 0.00 0.00 0.00 3.01
220 221 4.484537 TGAGACTACGCTACCTAGAACT 57.515 45.455 0.00 0.00 0.00 3.01
221 222 4.023878 CCATGAGACTACGCTACCTAGAAC 60.024 50.000 0.00 0.00 0.00 3.01
222 223 4.135306 CCATGAGACTACGCTACCTAGAA 58.865 47.826 0.00 0.00 0.00 2.10
223 224 3.390311 TCCATGAGACTACGCTACCTAGA 59.610 47.826 0.00 0.00 0.00 2.43
224 225 3.741249 TCCATGAGACTACGCTACCTAG 58.259 50.000 0.00 0.00 0.00 3.02
225 226 3.390311 TCTCCATGAGACTACGCTACCTA 59.610 47.826 0.00 0.00 33.35 3.08
226 227 2.172930 TCTCCATGAGACTACGCTACCT 59.827 50.000 0.00 0.00 33.35 3.08
227 228 2.550606 CTCTCCATGAGACTACGCTACC 59.449 54.545 0.00 0.00 45.39 3.18
228 229 3.207778 ACTCTCCATGAGACTACGCTAC 58.792 50.000 0.00 0.00 45.39 3.58
229 230 3.562343 ACTCTCCATGAGACTACGCTA 57.438 47.619 0.00 0.00 45.39 4.26
230 231 2.428544 ACTCTCCATGAGACTACGCT 57.571 50.000 0.00 0.00 45.39 5.07
231 232 3.207778 ACTACTCTCCATGAGACTACGC 58.792 50.000 0.00 0.00 45.39 4.42
232 233 5.821516 AAACTACTCTCCATGAGACTACG 57.178 43.478 0.00 0.00 45.39 3.51
233 234 9.738832 GAATAAAACTACTCTCCATGAGACTAC 57.261 37.037 0.00 0.00 45.39 2.73
234 235 8.915036 GGAATAAAACTACTCTCCATGAGACTA 58.085 37.037 0.00 0.00 45.39 2.59
235 236 7.147637 GGGAATAAAACTACTCTCCATGAGACT 60.148 40.741 0.00 0.00 45.39 3.24
236 237 6.987404 GGGAATAAAACTACTCTCCATGAGAC 59.013 42.308 0.00 0.00 45.39 3.36
237 238 6.903534 AGGGAATAAAACTACTCTCCATGAGA 59.096 38.462 0.00 0.00 45.39 3.27
239 240 7.844779 AGTAGGGAATAAAACTACTCTCCATGA 59.155 37.037 0.00 0.00 42.65 3.07
240 241 8.024145 AGTAGGGAATAAAACTACTCTCCATG 57.976 38.462 0.00 0.00 42.65 3.66
241 242 8.625467 AAGTAGGGAATAAAACTACTCTCCAT 57.375 34.615 0.00 0.00 44.76 3.41
242 243 9.198475 CTAAGTAGGGAATAAAACTACTCTCCA 57.802 37.037 0.00 0.00 44.76 3.86
243 244 8.640651 CCTAAGTAGGGAATAAAACTACTCTCC 58.359 40.741 0.00 0.00 44.76 3.71
244 245 8.143193 GCCTAAGTAGGGAATAAAACTACTCTC 58.857 40.741 6.51 0.00 44.76 3.20
245 246 7.201893 CGCCTAAGTAGGGAATAAAACTACTCT 60.202 40.741 6.51 0.00 44.76 3.24
246 247 6.922407 CGCCTAAGTAGGGAATAAAACTACTC 59.078 42.308 6.51 0.00 44.76 2.59
247 248 6.684865 GCGCCTAAGTAGGGAATAAAACTACT 60.685 42.308 6.51 0.00 46.78 2.57
248 249 5.464722 GCGCCTAAGTAGGGAATAAAACTAC 59.535 44.000 6.51 0.00 43.82 2.73
249 250 5.364735 AGCGCCTAAGTAGGGAATAAAACTA 59.635 40.000 2.29 0.00 43.82 2.24
250 251 4.163649 AGCGCCTAAGTAGGGAATAAAACT 59.836 41.667 2.29 0.00 43.82 2.66
251 252 4.272748 CAGCGCCTAAGTAGGGAATAAAAC 59.727 45.833 2.29 0.00 43.82 2.43
252 253 4.080751 ACAGCGCCTAAGTAGGGAATAAAA 60.081 41.667 2.29 0.00 43.82 1.52
253 254 3.453353 ACAGCGCCTAAGTAGGGAATAAA 59.547 43.478 2.29 0.00 43.82 1.40
254 255 3.036091 ACAGCGCCTAAGTAGGGAATAA 58.964 45.455 2.29 0.00 43.82 1.40
255 256 2.364324 CACAGCGCCTAAGTAGGGAATA 59.636 50.000 2.29 0.00 43.82 1.75
256 257 1.139058 CACAGCGCCTAAGTAGGGAAT 59.861 52.381 2.29 0.00 43.82 3.01
257 258 0.535335 CACAGCGCCTAAGTAGGGAA 59.465 55.000 2.29 0.00 43.82 3.97
258 259 0.323999 TCACAGCGCCTAAGTAGGGA 60.324 55.000 2.29 0.00 43.82 4.20
259 260 0.535335 TTCACAGCGCCTAAGTAGGG 59.465 55.000 2.29 0.00 43.82 3.53
260 261 2.380084 TTTCACAGCGCCTAAGTAGG 57.620 50.000 2.29 0.00 46.42 3.18
261 262 3.746492 AGTTTTTCACAGCGCCTAAGTAG 59.254 43.478 2.29 0.00 0.00 2.57
262 263 3.496884 CAGTTTTTCACAGCGCCTAAGTA 59.503 43.478 2.29 0.00 0.00 2.24
263 264 2.290641 CAGTTTTTCACAGCGCCTAAGT 59.709 45.455 2.29 0.00 0.00 2.24
264 265 2.350772 CCAGTTTTTCACAGCGCCTAAG 60.351 50.000 2.29 0.00 0.00 2.18
265 266 1.606668 CCAGTTTTTCACAGCGCCTAA 59.393 47.619 2.29 0.00 0.00 2.69
266 267 1.234821 CCAGTTTTTCACAGCGCCTA 58.765 50.000 2.29 0.00 0.00 3.93
267 268 0.751643 ACCAGTTTTTCACAGCGCCT 60.752 50.000 2.29 0.00 0.00 5.52
268 269 0.102300 AACCAGTTTTTCACAGCGCC 59.898 50.000 2.29 0.00 0.00 6.53
269 270 1.199624 CAACCAGTTTTTCACAGCGC 58.800 50.000 0.00 0.00 0.00 5.92
270 271 2.159448 TCACAACCAGTTTTTCACAGCG 60.159 45.455 0.00 0.00 0.00 5.18
271 272 3.119495 AGTCACAACCAGTTTTTCACAGC 60.119 43.478 0.00 0.00 0.00 4.40
272 273 4.414852 CAGTCACAACCAGTTTTTCACAG 58.585 43.478 0.00 0.00 0.00 3.66
273 274 3.366883 GCAGTCACAACCAGTTTTTCACA 60.367 43.478 0.00 0.00 0.00 3.58
274 275 3.119495 AGCAGTCACAACCAGTTTTTCAC 60.119 43.478 0.00 0.00 0.00 3.18
275 276 3.088532 AGCAGTCACAACCAGTTTTTCA 58.911 40.909 0.00 0.00 0.00 2.69
276 277 3.782889 AGCAGTCACAACCAGTTTTTC 57.217 42.857 0.00 0.00 0.00 2.29
277 278 4.535526 AAAGCAGTCACAACCAGTTTTT 57.464 36.364 0.00 0.00 0.00 1.94
278 279 5.594317 AGATAAAGCAGTCACAACCAGTTTT 59.406 36.000 0.00 0.00 0.00 2.43
279 280 5.009010 CAGATAAAGCAGTCACAACCAGTTT 59.991 40.000 0.00 0.00 0.00 2.66
280 281 4.516698 CAGATAAAGCAGTCACAACCAGTT 59.483 41.667 0.00 0.00 0.00 3.16
281 282 4.067896 CAGATAAAGCAGTCACAACCAGT 58.932 43.478 0.00 0.00 0.00 4.00
282 283 3.120060 GCAGATAAAGCAGTCACAACCAG 60.120 47.826 0.00 0.00 0.00 4.00
283 284 2.813754 GCAGATAAAGCAGTCACAACCA 59.186 45.455 0.00 0.00 0.00 3.67
284 285 3.077359 AGCAGATAAAGCAGTCACAACC 58.923 45.455 0.00 0.00 0.00 3.77
285 286 4.667668 CGAAGCAGATAAAGCAGTCACAAC 60.668 45.833 0.00 0.00 0.00 3.32
286 287 3.433274 CGAAGCAGATAAAGCAGTCACAA 59.567 43.478 0.00 0.00 0.00 3.33
287 288 2.995939 CGAAGCAGATAAAGCAGTCACA 59.004 45.455 0.00 0.00 0.00 3.58
288 289 3.254060 TCGAAGCAGATAAAGCAGTCAC 58.746 45.455 0.00 0.00 0.00 3.67
289 290 3.592898 TCGAAGCAGATAAAGCAGTCA 57.407 42.857 0.00 0.00 0.00 3.41
290 291 4.367450 AGATCGAAGCAGATAAAGCAGTC 58.633 43.478 0.00 0.00 0.00 3.51
291 292 4.399004 AGATCGAAGCAGATAAAGCAGT 57.601 40.909 0.00 0.00 0.00 4.40
292 293 8.526218 TTTATAGATCGAAGCAGATAAAGCAG 57.474 34.615 0.00 0.00 0.00 4.24
293 294 8.887036 TTTTATAGATCGAAGCAGATAAAGCA 57.113 30.769 0.00 0.00 0.00 3.91
297 298 9.219603 CCCAATTTTATAGATCGAAGCAGATAA 57.780 33.333 0.00 0.00 0.00 1.75
298 299 7.824289 CCCCAATTTTATAGATCGAAGCAGATA 59.176 37.037 0.00 0.00 0.00 1.98
299 300 6.656693 CCCCAATTTTATAGATCGAAGCAGAT 59.343 38.462 0.00 0.00 0.00 2.90
300 301 5.997746 CCCCAATTTTATAGATCGAAGCAGA 59.002 40.000 0.00 0.00 0.00 4.26
301 302 5.335191 GCCCCAATTTTATAGATCGAAGCAG 60.335 44.000 0.00 0.00 0.00 4.24
302 303 4.518970 GCCCCAATTTTATAGATCGAAGCA 59.481 41.667 0.00 0.00 0.00 3.91
303 304 4.518970 TGCCCCAATTTTATAGATCGAAGC 59.481 41.667 0.00 0.00 0.00 3.86
304 305 5.182001 CCTGCCCCAATTTTATAGATCGAAG 59.818 44.000 0.00 0.00 0.00 3.79
305 306 5.070001 CCTGCCCCAATTTTATAGATCGAA 58.930 41.667 0.00 0.00 0.00 3.71
306 307 4.506625 CCCTGCCCCAATTTTATAGATCGA 60.507 45.833 0.00 0.00 0.00 3.59
307 308 3.758554 CCCTGCCCCAATTTTATAGATCG 59.241 47.826 0.00 0.00 0.00 3.69
308 309 4.089361 CCCCTGCCCCAATTTTATAGATC 58.911 47.826 0.00 0.00 0.00 2.75
309 310 3.181407 CCCCCTGCCCCAATTTTATAGAT 60.181 47.826 0.00 0.00 0.00 1.98
310 311 2.178984 CCCCCTGCCCCAATTTTATAGA 59.821 50.000 0.00 0.00 0.00 1.98
311 312 2.608623 CCCCCTGCCCCAATTTTATAG 58.391 52.381 0.00 0.00 0.00 1.31
312 313 2.785357 CCCCCTGCCCCAATTTTATA 57.215 50.000 0.00 0.00 0.00 0.98
313 314 3.652886 CCCCCTGCCCCAATTTTAT 57.347 52.632 0.00 0.00 0.00 1.40
330 331 4.359434 TTTTTAATGAAAGGGGTTGCCC 57.641 40.909 0.00 0.00 44.51 5.36
470 471 3.882888 TCCGCATCTTCAAAGTCAAACTT 59.117 39.130 0.00 0.00 40.80 2.66
471 472 3.476552 TCCGCATCTTCAAAGTCAAACT 58.523 40.909 0.00 0.00 0.00 2.66
472 473 3.251004 ACTCCGCATCTTCAAAGTCAAAC 59.749 43.478 0.00 0.00 0.00 2.93
473 474 3.476552 ACTCCGCATCTTCAAAGTCAAA 58.523 40.909 0.00 0.00 0.00 2.69
474 475 3.126001 ACTCCGCATCTTCAAAGTCAA 57.874 42.857 0.00 0.00 0.00 3.18
475 476 2.839486 ACTCCGCATCTTCAAAGTCA 57.161 45.000 0.00 0.00 0.00 3.41
476 477 5.803020 ATTTACTCCGCATCTTCAAAGTC 57.197 39.130 0.00 0.00 0.00 3.01
477 478 7.681939 TTTATTTACTCCGCATCTTCAAAGT 57.318 32.000 0.00 0.00 0.00 2.66
478 479 8.850452 GTTTTTATTTACTCCGCATCTTCAAAG 58.150 33.333 0.00 0.00 0.00 2.77
479 480 8.353684 TGTTTTTATTTACTCCGCATCTTCAAA 58.646 29.630 0.00 0.00 0.00 2.69
480 481 7.877003 TGTTTTTATTTACTCCGCATCTTCAA 58.123 30.769 0.00 0.00 0.00 2.69
481 482 7.389330 TCTGTTTTTATTTACTCCGCATCTTCA 59.611 33.333 0.00 0.00 0.00 3.02
482 483 7.748847 TCTGTTTTTATTTACTCCGCATCTTC 58.251 34.615 0.00 0.00 0.00 2.87
483 484 7.606456 TCTCTGTTTTTATTTACTCCGCATCTT 59.394 33.333 0.00 0.00 0.00 2.40
484 485 7.103641 TCTCTGTTTTTATTTACTCCGCATCT 58.896 34.615 0.00 0.00 0.00 2.90
485 486 7.277981 TCTCTCTGTTTTTATTTACTCCGCATC 59.722 37.037 0.00 0.00 0.00 3.91
486 487 7.103641 TCTCTCTGTTTTTATTTACTCCGCAT 58.896 34.615 0.00 0.00 0.00 4.73
487 488 6.460781 TCTCTCTGTTTTTATTTACTCCGCA 58.539 36.000 0.00 0.00 0.00 5.69
488 489 6.590677 ACTCTCTCTGTTTTTATTTACTCCGC 59.409 38.462 0.00 0.00 0.00 5.54
489 490 9.804758 ATACTCTCTCTGTTTTTATTTACTCCG 57.195 33.333 0.00 0.00 0.00 4.63
496 497 9.646427 GTCTGTCATACTCTCTCTGTTTTTATT 57.354 33.333 0.00 0.00 0.00 1.40
497 498 8.807118 TGTCTGTCATACTCTCTCTGTTTTTAT 58.193 33.333 0.00 0.00 0.00 1.40
498 499 8.178313 TGTCTGTCATACTCTCTCTGTTTTTA 57.822 34.615 0.00 0.00 0.00 1.52
499 500 7.014711 TCTGTCTGTCATACTCTCTCTGTTTTT 59.985 37.037 0.00 0.00 0.00 1.94
500 501 6.491745 TCTGTCTGTCATACTCTCTCTGTTTT 59.508 38.462 0.00 0.00 0.00 2.43
501 502 6.007076 TCTGTCTGTCATACTCTCTCTGTTT 58.993 40.000 0.00 0.00 0.00 2.83
502 503 5.414454 GTCTGTCTGTCATACTCTCTCTGTT 59.586 44.000 0.00 0.00 0.00 3.16
503 504 4.941263 GTCTGTCTGTCATACTCTCTCTGT 59.059 45.833 0.00 0.00 0.00 3.41
504 505 4.940654 TGTCTGTCTGTCATACTCTCTCTG 59.059 45.833 0.00 0.00 0.00 3.35
505 506 5.045942 TCTGTCTGTCTGTCATACTCTCTCT 60.046 44.000 0.00 0.00 0.00 3.10
506 507 5.182487 TCTGTCTGTCTGTCATACTCTCTC 58.818 45.833 0.00 0.00 0.00 3.20
507 508 5.172687 TCTGTCTGTCTGTCATACTCTCT 57.827 43.478 0.00 0.00 0.00 3.10
508 509 6.989759 TCTATCTGTCTGTCTGTCATACTCTC 59.010 42.308 0.00 0.00 0.00 3.20
509 510 6.894682 TCTATCTGTCTGTCTGTCATACTCT 58.105 40.000 0.00 0.00 0.00 3.24
510 511 7.744087 ATCTATCTGTCTGTCTGTCATACTC 57.256 40.000 0.00 0.00 0.00 2.59
511 512 8.655901 TCTATCTATCTGTCTGTCTGTCATACT 58.344 37.037 0.00 0.00 0.00 2.12
691 696 2.202440 CAATGCGAGCTGCTGTGC 60.202 61.111 7.01 11.88 46.63 4.57
692 697 2.483745 CCAATGCGAGCTGCTGTG 59.516 61.111 7.01 0.00 46.63 3.66
693 698 2.749044 CCCAATGCGAGCTGCTGT 60.749 61.111 7.01 0.00 46.63 4.40
695 700 1.748122 CTTCCCAATGCGAGCTGCT 60.748 57.895 0.00 0.00 46.63 4.24
696 701 2.796651 CTTCCCAATGCGAGCTGC 59.203 61.111 0.00 0.00 46.70 5.25
697 702 1.712977 GAGCTTCCCAATGCGAGCTG 61.713 60.000 7.72 0.00 44.88 4.24
698 703 2.673523 AGCTTCCCAATGCGAGCT 59.326 55.556 0.00 0.00 40.44 4.09
699 704 2.817423 CGAGCTTCCCAATGCGAGC 61.817 63.158 0.00 0.00 35.42 5.03
816 2205 0.394192 TGATAATCTCGCAGCCAGGG 59.606 55.000 0.00 0.00 0.00 4.45
819 2213 0.744281 TCGTGATAATCTCGCAGCCA 59.256 50.000 0.00 0.00 33.88 4.75
999 2428 0.393808 GCTTGCTTCGGTTCCCCATA 60.394 55.000 0.00 0.00 0.00 2.74
1304 2771 0.316772 CTATACGTGCTCCGGTGTCG 60.317 60.000 16.82 16.82 42.24 4.35
1305 2772 1.019673 TCTATACGTGCTCCGGTGTC 58.980 55.000 0.00 0.00 42.24 3.67
1306 2773 1.466856 TTCTATACGTGCTCCGGTGT 58.533 50.000 0.00 0.00 42.24 4.16
1307 2774 2.795175 ATTCTATACGTGCTCCGGTG 57.205 50.000 0.00 0.00 42.24 4.94
1308 2775 3.484407 ACTATTCTATACGTGCTCCGGT 58.516 45.455 0.00 0.00 42.24 5.28
1330 2804 0.674581 CTGAGCGTTCCTTGGCATGA 60.675 55.000 0.00 0.00 0.00 3.07
1352 2830 4.863689 CGCCAAAATTTGCATACAGAATCA 59.136 37.500 0.00 0.00 0.00 2.57
1531 3012 2.487762 ACAACAACTTATGTGATGGCCG 59.512 45.455 0.00 0.00 42.99 6.13
1545 3026 2.216898 AGAGAAGCAGAGCACAACAAC 58.783 47.619 0.00 0.00 0.00 3.32
1596 3080 6.662414 TGAATGTAAATTTAGGCAGTCTCG 57.338 37.500 13.86 0.00 0.00 4.04
1656 3174 5.927115 CCTTGTTCCAGTTGTAGAAGTCTAC 59.073 44.000 10.92 10.92 46.78 2.59
1700 3218 2.342279 CCGGTGAAAGACGAGCCA 59.658 61.111 0.00 0.00 0.00 4.75
1719 3237 4.823989 CACAGGATCAACTTCTTCCTTGTT 59.176 41.667 0.00 0.00 37.80 2.83
1760 3278 3.845781 TCAGTAGGAGGAAATCATGGC 57.154 47.619 0.00 0.00 0.00 4.40
1811 3331 5.283294 TGTCAAGATTGCAAAATCACACAG 58.717 37.500 1.71 0.00 0.00 3.66
1815 3335 6.005583 TCTCTGTCAAGATTGCAAAATCAC 57.994 37.500 1.71 0.00 0.00 3.06
1817 3337 6.441274 TGTTCTCTGTCAAGATTGCAAAATC 58.559 36.000 1.71 0.00 0.00 2.17
1967 3698 2.231716 TAGAGCCTGCTACAGTTCCA 57.768 50.000 0.00 0.00 0.00 3.53
1969 3700 4.572795 GGAAATTAGAGCCTGCTACAGTTC 59.427 45.833 0.00 0.00 0.00 3.01
1994 3725 3.889815 CCTGCCACATCCTTGAAATAGA 58.110 45.455 0.00 0.00 0.00 1.98
1997 3728 1.188863 GCCTGCCACATCCTTGAAAT 58.811 50.000 0.00 0.00 0.00 2.17
2000 3731 1.203441 AGAGCCTGCCACATCCTTGA 61.203 55.000 0.00 0.00 0.00 3.02
2269 5412 6.530120 TCCTGTAAGAGCAAATTAAGACACA 58.470 36.000 0.00 0.00 34.07 3.72
2270 5413 7.361286 CCTTCCTGTAAGAGCAAATTAAGACAC 60.361 40.741 0.00 0.00 37.38 3.67
2272 5415 6.879458 TCCTTCCTGTAAGAGCAAATTAAGAC 59.121 38.462 0.00 0.00 37.38 3.01
2310 5453 2.158561 AAAAGGCCGCAGCATGGTTC 62.159 55.000 0.00 0.00 42.56 3.62
2391 5539 7.277760 TGTCATAGTTCATAGTTATGTGCACAC 59.722 37.037 24.37 10.03 35.26 3.82
2421 6481 2.684881 GGCATCGGTCATTGATCAGTTT 59.315 45.455 0.00 0.00 0.00 2.66
2425 6485 3.836365 TTAGGCATCGGTCATTGATCA 57.164 42.857 0.00 0.00 0.00 2.92
2570 7135 8.587952 AAAGGTACAATTCAAAACAGCATAAC 57.412 30.769 0.00 0.00 0.00 1.89
2596 7165 6.367969 CGGAGAGGACGATCTCTTTTTAAAAA 59.632 38.462 12.62 12.62 43.51 1.94
2597 7166 5.867716 CGGAGAGGACGATCTCTTTTTAAAA 59.132 40.000 12.05 0.00 43.51 1.52
2598 7167 5.184479 TCGGAGAGGACGATCTCTTTTTAAA 59.816 40.000 12.05 0.00 43.51 1.52
2599 7168 4.703575 TCGGAGAGGACGATCTCTTTTTAA 59.296 41.667 12.05 0.00 43.51 1.52
2600 7169 4.267536 TCGGAGAGGACGATCTCTTTTTA 58.732 43.478 12.05 0.03 43.51 1.52
2601 7170 3.090037 TCGGAGAGGACGATCTCTTTTT 58.910 45.455 12.05 0.00 43.51 1.94
2602 7171 2.724454 TCGGAGAGGACGATCTCTTTT 58.276 47.619 12.05 0.00 43.51 2.27
2603 7172 2.421751 TCGGAGAGGACGATCTCTTT 57.578 50.000 12.05 0.00 43.51 2.52
2610 7179 1.776662 ATGGAAATCGGAGAGGACGA 58.223 50.000 0.00 0.00 43.63 4.20
2611 7180 3.944055 ATATGGAAATCGGAGAGGACG 57.056 47.619 0.00 0.00 43.63 4.79
2612 7181 6.378564 TCTGATATATGGAAATCGGAGAGGAC 59.621 42.308 0.00 0.00 43.63 3.85
2613 7182 6.494059 TCTGATATATGGAAATCGGAGAGGA 58.506 40.000 0.00 0.00 43.63 3.71
2614 7183 6.782082 TCTGATATATGGAAATCGGAGAGG 57.218 41.667 0.00 0.00 43.63 3.69
2615 7184 7.547370 GGTTTCTGATATATGGAAATCGGAGAG 59.453 40.741 11.31 0.00 43.63 3.20
2616 7185 7.016170 TGGTTTCTGATATATGGAAATCGGAGA 59.984 37.037 11.31 0.00 38.43 3.71
2617 7186 7.118390 GTGGTTTCTGATATATGGAAATCGGAG 59.882 40.741 11.31 0.00 38.43 4.63
2618 7187 6.934645 GTGGTTTCTGATATATGGAAATCGGA 59.065 38.462 11.31 0.00 36.06 4.55
2619 7188 6.710295 TGTGGTTTCTGATATATGGAAATCGG 59.290 38.462 11.31 0.00 34.08 4.18
2620 7189 7.442364 ACTGTGGTTTCTGATATATGGAAATCG 59.558 37.037 11.31 4.56 34.08 3.34
2621 7190 8.562892 CACTGTGGTTTCTGATATATGGAAATC 58.437 37.037 0.00 11.29 32.71 2.17
2622 7191 8.055181 ACACTGTGGTTTCTGATATATGGAAAT 58.945 33.333 13.09 0.00 32.71 2.17
2623 7192 7.402054 ACACTGTGGTTTCTGATATATGGAAA 58.598 34.615 13.09 0.00 0.00 3.13
2624 7193 6.957631 ACACTGTGGTTTCTGATATATGGAA 58.042 36.000 13.09 0.00 0.00 3.53
2625 7194 6.408092 GGACACTGTGGTTTCTGATATATGGA 60.408 42.308 13.09 0.00 0.00 3.41
2626 7195 5.760253 GGACACTGTGGTTTCTGATATATGG 59.240 44.000 13.09 0.00 0.00 2.74
2627 7196 6.481313 CAGGACACTGTGGTTTCTGATATATG 59.519 42.308 13.09 0.00 39.92 1.78
2628 7197 6.586344 CAGGACACTGTGGTTTCTGATATAT 58.414 40.000 13.09 0.00 39.92 0.86
2629 7198 5.977635 CAGGACACTGTGGTTTCTGATATA 58.022 41.667 13.09 0.00 39.92 0.86
2630 7199 4.836825 CAGGACACTGTGGTTTCTGATAT 58.163 43.478 13.09 0.00 39.92 1.63
2631 7200 4.271696 CAGGACACTGTGGTTTCTGATA 57.728 45.455 13.09 0.00 39.92 2.15
2632 7201 3.131709 CAGGACACTGTGGTTTCTGAT 57.868 47.619 13.09 0.00 39.92 2.90
2633 7202 2.620251 CAGGACACTGTGGTTTCTGA 57.380 50.000 13.09 0.00 39.92 3.27
2644 7213 7.002879 TCTTCTAGTAGTTGTTACAGGACACT 58.997 38.462 0.00 0.00 34.56 3.55
2645 7214 7.211966 TCTTCTAGTAGTTGTTACAGGACAC 57.788 40.000 0.00 0.00 34.56 3.67
2646 7215 7.828508 TTCTTCTAGTAGTTGTTACAGGACA 57.171 36.000 0.00 0.00 34.56 4.02
2647 7216 9.141400 CAATTCTTCTAGTAGTTGTTACAGGAC 57.859 37.037 0.00 0.00 34.56 3.85
2648 7217 8.867097 ACAATTCTTCTAGTAGTTGTTACAGGA 58.133 33.333 0.00 0.00 34.56 3.86
2651 7220 9.918630 GGTACAATTCTTCTAGTAGTTGTTACA 57.081 33.333 9.59 0.00 34.56 2.41
2654 7223 8.867097 TCAGGTACAATTCTTCTAGTAGTTGTT 58.133 33.333 9.59 0.00 32.64 2.83
2655 7224 8.418597 TCAGGTACAATTCTTCTAGTAGTTGT 57.581 34.615 9.36 9.36 34.54 3.32
2656 7225 9.522804 GATCAGGTACAATTCTTCTAGTAGTTG 57.477 37.037 0.00 0.00 0.00 3.16
2657 7226 8.407064 CGATCAGGTACAATTCTTCTAGTAGTT 58.593 37.037 0.00 0.00 0.00 2.24
2658 7227 7.556996 ACGATCAGGTACAATTCTTCTAGTAGT 59.443 37.037 0.00 0.00 0.00 2.73
2659 7228 7.858382 CACGATCAGGTACAATTCTTCTAGTAG 59.142 40.741 0.00 0.00 0.00 2.57
2660 7229 7.338703 ACACGATCAGGTACAATTCTTCTAGTA 59.661 37.037 0.00 0.00 0.00 1.82
2661 7230 6.153000 ACACGATCAGGTACAATTCTTCTAGT 59.847 38.462 0.00 0.00 0.00 2.57
2662 7231 6.565234 ACACGATCAGGTACAATTCTTCTAG 58.435 40.000 0.00 0.00 0.00 2.43
2663 7232 6.525578 ACACGATCAGGTACAATTCTTCTA 57.474 37.500 0.00 0.00 0.00 2.10
2664 7233 5.407407 ACACGATCAGGTACAATTCTTCT 57.593 39.130 0.00 0.00 0.00 2.85
2665 7234 5.408604 ACAACACGATCAGGTACAATTCTTC 59.591 40.000 0.00 0.00 0.00 2.87
2666 7235 5.179368 CACAACACGATCAGGTACAATTCTT 59.821 40.000 0.00 0.00 0.00 2.52
2667 7236 4.690748 CACAACACGATCAGGTACAATTCT 59.309 41.667 0.00 0.00 0.00 2.40
2668 7237 4.451096 ACACAACACGATCAGGTACAATTC 59.549 41.667 0.00 0.00 0.00 2.17
2669 7238 4.385825 ACACAACACGATCAGGTACAATT 58.614 39.130 0.00 0.00 0.00 2.32
2670 7239 4.002906 ACACAACACGATCAGGTACAAT 57.997 40.909 0.00 0.00 0.00 2.71
2700 7269 4.563140 AAATTCTTTACCGAGCCCTACA 57.437 40.909 0.00 0.00 0.00 2.74
2712 7285 8.177119 AGTGCACAAAGATGGTAAATTCTTTA 57.823 30.769 21.04 0.00 39.53 1.85
2730 7303 2.114638 GGCAACTTGGAAGTGCACA 58.885 52.632 21.04 0.00 39.66 4.57
2811 7395 3.157087 AGCAACATGTTTCTGTAAGGGG 58.843 45.455 10.07 0.00 0.00 4.79
2820 7404 2.991190 CTGCATCCAAGCAACATGTTTC 59.009 45.455 8.77 3.81 45.13 2.78
2981 7589 5.558818 AGATTAGTGCCTTGATGGATGATC 58.441 41.667 0.00 0.00 38.35 2.92
2983 7591 5.128205 CAAGATTAGTGCCTTGATGGATGA 58.872 41.667 0.00 0.00 41.56 2.92
2984 7592 4.277672 CCAAGATTAGTGCCTTGATGGATG 59.722 45.833 0.00 0.00 41.56 3.51
2985 7593 4.079558 ACCAAGATTAGTGCCTTGATGGAT 60.080 41.667 0.00 0.00 41.56 3.41
2986 7594 3.266772 ACCAAGATTAGTGCCTTGATGGA 59.733 43.478 0.00 0.00 41.56 3.41
2987 7595 3.624777 ACCAAGATTAGTGCCTTGATGG 58.375 45.455 0.00 0.00 41.56 3.51
3006 7626 0.108756 GGCACGTGGAAGTAGAGACC 60.109 60.000 18.88 1.44 0.00 3.85
3069 7698 2.906388 TGCTTGCAGCTTCGCCAA 60.906 55.556 9.12 0.00 42.97 4.52
3174 7803 5.922739 ATACACACACACATAACACACAG 57.077 39.130 0.00 0.00 0.00 3.66
3176 7805 6.018262 ACTGAATACACACACACATAACACAC 60.018 38.462 0.00 0.00 0.00 3.82
3177 7806 6.052360 ACTGAATACACACACACATAACACA 58.948 36.000 0.00 0.00 0.00 3.72
3178 7807 6.347402 GGACTGAATACACACACACATAACAC 60.347 42.308 0.00 0.00 0.00 3.32
3179 7808 5.699001 GGACTGAATACACACACACATAACA 59.301 40.000 0.00 0.00 0.00 2.41
3180 7809 5.932303 AGGACTGAATACACACACACATAAC 59.068 40.000 0.00 0.00 0.00 1.89
3181 7810 5.931724 CAGGACTGAATACACACACACATAA 59.068 40.000 0.00 0.00 0.00 1.90
3182 7811 5.011635 ACAGGACTGAATACACACACACATA 59.988 40.000 6.29 0.00 0.00 2.29
3183 7812 4.202357 ACAGGACTGAATACACACACACAT 60.202 41.667 6.29 0.00 0.00 3.21
3184 7813 3.133901 ACAGGACTGAATACACACACACA 59.866 43.478 6.29 0.00 0.00 3.72
3224 7870 3.950794 GAATCCTGCGTCGGCACCA 62.951 63.158 0.00 0.00 46.21 4.17
3410 8056 0.793861 GCACACGAAATTCAGCGGTA 59.206 50.000 0.00 0.00 0.00 4.02
3426 8072 1.201414 CCCGGGAAAACTTGTATGCAC 59.799 52.381 18.48 0.00 0.00 4.57
3536 8182 3.003113 GCGGCCGTAGAACCAGTCT 62.003 63.158 28.70 0.00 40.71 3.24
3558 8204 1.540363 GCAGTCCGTCTTCTGAAACCA 60.540 52.381 0.00 0.00 34.02 3.67
3643 8289 0.248539 CAGTAGTACGAAGCGAGGCC 60.249 60.000 0.00 0.00 0.00 5.19
3665 8311 5.909477 AGCAACAATAATGTGATCAATGGG 58.091 37.500 0.00 0.00 40.46 4.00
3906 8568 0.801251 CCGACGACCGAGACTTAACT 59.199 55.000 0.00 0.00 41.76 2.24
3917 8579 1.299240 GCTAGCTTAGCCGACGACC 60.299 63.158 7.70 0.00 45.95 4.79
3942 8604 7.965107 GCATCTTCACTTGTTATTTCCTGTAAG 59.035 37.037 0.00 0.00 0.00 2.34
4027 8690 5.604650 AGGCCAGTTTCTAGATAGCTTGTAT 59.395 40.000 5.01 0.00 0.00 2.29
4046 8709 3.130340 GTCTTTTCAGTTTTGTGAGGCCA 59.870 43.478 5.01 0.00 0.00 5.36
4105 8768 7.867403 TGGTCTTGCTTGTAATTTTCTTTCATC 59.133 33.333 0.00 0.00 0.00 2.92
4146 8809 1.106351 ACATGCGCTTTGGTGTGGAA 61.106 50.000 9.73 0.00 0.00 3.53
4148 8811 1.081242 GACATGCGCTTTGGTGTGG 60.081 57.895 9.73 0.00 0.00 4.17
4161 8824 3.197790 CCGAAGGCAGGCGACATG 61.198 66.667 0.00 0.00 46.14 3.21
4234 8909 7.406553 GTTTGTAAAGCTGCATATCAACGATA 58.593 34.615 1.02 0.00 0.00 2.92
4256 8931 6.604795 CCATTGATGAGTTATCTTGGAGGTTT 59.395 38.462 10.17 0.00 39.84 3.27
4269 8944 3.159213 TGGCTTCACCATTGATGAGTT 57.841 42.857 0.00 0.00 46.36 3.01
4298 8976 2.027625 GCTCCGGTCTGGTTCGTTG 61.028 63.158 0.00 0.00 39.52 4.10
4305 8983 2.738521 CGTGTTGCTCCGGTCTGG 60.739 66.667 0.00 0.00 40.09 3.86
4314 8992 3.636043 CGTGTTCGGCGTGTTGCT 61.636 61.111 6.85 0.00 45.43 3.91
4602 9285 4.165180 TCCTATGGTCGGGAATGAATTTGA 59.835 41.667 0.00 0.00 0.00 2.69
4612 9295 0.538977 GATCGGTCCTATGGTCGGGA 60.539 60.000 0.00 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.