Multiple sequence alignment - TraesCS6D01G244200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G244200 chr6D 100.000 6245 0 0 1 6245 346553700 346559944 0.000000e+00 11533.0
1 TraesCS6D01G244200 chr6A 91.556 4204 212 63 1649 5789 497465912 497461789 0.000000e+00 5664.0
2 TraesCS6D01G244200 chr6A 89.868 1589 69 34 45 1562 497467505 497465938 0.000000e+00 1958.0
3 TraesCS6D01G244200 chr6A 84.874 357 11 7 5790 6145 497461738 497461424 2.810000e-83 320.0
4 TraesCS6D01G244200 chr6B 93.367 3166 144 30 2652 5789 534923861 534920734 0.000000e+00 4623.0
5 TraesCS6D01G244200 chr6B 88.192 2185 108 56 426 2553 534925968 534923877 0.000000e+00 2468.0
6 TraesCS6D01G244200 chr6B 94.349 407 14 4 1 405 534926635 534926236 3.200000e-172 616.0
7 TraesCS6D01G244200 chr6B 95.720 257 10 1 5790 6046 534920683 534920428 4.500000e-111 412.0
8 TraesCS6D01G244200 chr6B 91.935 62 3 2 6184 6243 534920278 534920217 1.120000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G244200 chr6D 346553700 346559944 6244 False 11533.000000 11533 100.0000 1 6245 1 chr6D.!!$F1 6244
1 TraesCS6D01G244200 chr6A 497461424 497467505 6081 True 2647.333333 5664 88.7660 45 6145 3 chr6A.!!$R1 6100
2 TraesCS6D01G244200 chr6B 534920217 534926635 6418 True 1641.020000 4623 92.7126 1 6243 5 chr6B.!!$R1 6242

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
940 1239 0.034059 CTGACTCTTCTGCCCGTTGT 59.966 55.0 0.00 0.0 0.00 3.32 F
1739 2086 0.179468 GGCTACCCATCAACGGCTTA 59.821 55.0 0.00 0.0 0.00 3.09 F
2162 2551 0.108615 GTCACTGGATGGAGTGTCGG 60.109 60.0 0.00 0.0 43.38 4.79 F
3761 4169 0.614979 ACATGGTCGAGCTGGTACCT 60.615 55.0 16.64 0.0 34.23 3.08 F
4959 5403 0.549950 CTCCTTGGATGGTGCAGGAT 59.450 55.0 0.00 0.0 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2055 2440 1.609580 GCCCCACATGTTCGTAGACAA 60.610 52.381 0.00 0.00 34.32 3.18 R
3567 3975 0.328258 TTGGGCAGCTTCTAAGGGTC 59.672 55.000 0.00 0.00 0.00 4.46 R
3894 4310 1.202879 TGAACATCTGAACGGGCCTTT 60.203 47.619 0.84 0.00 0.00 3.11 R
5202 5646 0.241213 CTCTCTTCTTGACGACGGCA 59.759 55.000 0.00 0.00 0.00 5.69 R
6203 6762 0.252881 AGAATCAGGGGGTCAGCTGA 60.253 55.000 13.74 13.74 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.202810 GCAGTAGTGAGGCGAGCC 60.203 66.667 5.89 5.89 0.00 4.70
32 33 2.347490 GAGCCGCCTTTCCACAGA 59.653 61.111 0.00 0.00 0.00 3.41
191 193 0.811281 CTCGCCCCCACATCTTTTTC 59.189 55.000 0.00 0.00 0.00 2.29
299 313 0.108138 CCATGTCCTCGTGAACCCTC 60.108 60.000 0.00 0.00 32.78 4.30
310 324 2.515854 GTGAACCCTCTTTCTTTCCCC 58.484 52.381 0.00 0.00 0.00 4.81
352 366 4.511454 GCCCAGTTCAAAATTCAAAGTTCC 59.489 41.667 0.00 0.00 0.00 3.62
355 369 6.037062 CCCAGTTCAAAATTCAAAGTTCCAAC 59.963 38.462 0.00 0.00 0.00 3.77
356 370 6.237808 CCAGTTCAAAATTCAAAGTTCCAACG 60.238 38.462 0.00 0.00 0.00 4.10
540 808 2.818432 AGTCGACGCCTCCGATTATTAT 59.182 45.455 10.46 0.00 38.38 1.28
541 809 3.255149 AGTCGACGCCTCCGATTATTATT 59.745 43.478 10.46 0.00 38.38 1.40
542 810 4.456911 AGTCGACGCCTCCGATTATTATTA 59.543 41.667 10.46 0.00 38.38 0.98
543 811 4.792189 GTCGACGCCTCCGATTATTATTAG 59.208 45.833 0.00 0.00 38.38 1.73
544 812 4.456911 TCGACGCCTCCGATTATTATTAGT 59.543 41.667 0.00 0.00 38.29 2.24
545 813 5.643348 TCGACGCCTCCGATTATTATTAGTA 59.357 40.000 0.00 0.00 38.29 1.82
594 862 0.836606 TCAATGCATCCCTTAGCCGA 59.163 50.000 0.00 0.00 0.00 5.54
796 1082 2.246993 TTAAAATCTGCGGCCGTGCG 62.247 55.000 28.70 15.31 37.81 5.34
940 1239 0.034059 CTGACTCTTCTGCCCGTTGT 59.966 55.000 0.00 0.00 0.00 3.32
963 1262 0.321387 GTCTCCGGGGTTTCAGGTTC 60.321 60.000 0.00 0.00 32.28 3.62
977 1276 1.303317 GGTTCGGTGCCCACTGATT 60.303 57.895 10.48 0.00 45.26 2.57
1121 1433 0.254462 CCTCCTTCCTTCCTTCCTGC 59.746 60.000 0.00 0.00 0.00 4.85
1140 1452 4.520492 CCTGCTAGTGACATTTTTGGTCTT 59.480 41.667 0.00 0.00 36.26 3.01
1172 1484 4.067192 TCTGTTCATGTGGTGTTCATCAG 58.933 43.478 0.00 0.00 0.00 2.90
1181 1493 1.270550 GGTGTTCATCAGGGCAGTTTG 59.729 52.381 0.00 0.00 0.00 2.93
1198 1510 5.130519 CAGTTTGTGTTCGTATCTTCGTTG 58.869 41.667 0.00 0.00 0.00 4.10
1216 1530 3.859386 CGTTGCCATTTTTATCCTCAAGC 59.141 43.478 0.00 0.00 0.00 4.01
1266 1583 0.321210 CTGTTGGATGCCCGTGTGTA 60.321 55.000 0.00 0.00 34.29 2.90
1317 1634 1.575447 GGAGGTCCCAAATCTGGCCT 61.575 60.000 3.32 0.00 41.99 5.19
1327 1644 3.385755 CCAAATCTGGCCTGAAATTAGGG 59.614 47.826 17.04 8.83 38.32 3.53
1330 1647 0.259938 CTGGCCTGAAATTAGGGGCT 59.740 55.000 3.32 0.00 44.54 5.19
1393 1717 1.051812 CGGGCCTGGTAGAGATGATT 58.948 55.000 2.57 0.00 0.00 2.57
1472 1798 1.876714 CTGTTGATCGCGTACCCCG 60.877 63.158 5.77 0.00 40.40 5.73
1559 1895 1.079127 ATCACCGGCCACGAAAGAG 60.079 57.895 0.00 0.00 44.60 2.85
1573 1917 2.286536 CGAAAGAGAGGAGCTAGTACGC 60.287 54.545 0.00 0.00 0.00 4.42
1574 1918 2.421751 AAGAGAGGAGCTAGTACGCA 57.578 50.000 0.00 0.00 0.00 5.24
1575 1919 1.961793 AGAGAGGAGCTAGTACGCAG 58.038 55.000 0.00 0.00 0.00 5.18
1577 1921 2.018515 GAGAGGAGCTAGTACGCAGTT 58.981 52.381 0.00 0.00 37.78 3.16
1578 1922 3.118334 AGAGAGGAGCTAGTACGCAGTTA 60.118 47.826 0.00 0.00 37.78 2.24
1579 1923 3.207778 AGAGGAGCTAGTACGCAGTTAG 58.792 50.000 0.00 0.00 37.78 2.34
1580 1924 2.944349 GAGGAGCTAGTACGCAGTTAGT 59.056 50.000 0.00 0.00 37.78 2.24
1581 1925 4.125703 GAGGAGCTAGTACGCAGTTAGTA 58.874 47.826 0.00 0.00 37.78 1.82
1582 1926 3.876320 AGGAGCTAGTACGCAGTTAGTAC 59.124 47.826 0.00 0.00 37.78 2.73
1583 1927 3.624861 GGAGCTAGTACGCAGTTAGTACA 59.375 47.826 8.86 0.00 44.92 2.90
1584 1928 4.260702 GGAGCTAGTACGCAGTTAGTACAG 60.261 50.000 8.86 5.76 44.92 2.74
1585 1929 4.260170 AGCTAGTACGCAGTTAGTACAGT 58.740 43.478 8.86 0.00 44.92 3.55
1608 1952 8.908903 CAGTACTAGTTTATGATCTCCTTGTCT 58.091 37.037 0.00 0.00 0.00 3.41
1634 1978 1.046472 TAGGATCCGGGCATTCACGT 61.046 55.000 5.98 0.00 0.00 4.49
1640 1984 2.359478 GGGCATTCACGTCCCGTT 60.359 61.111 0.00 0.00 38.32 4.44
1641 1985 2.396157 GGGCATTCACGTCCCGTTC 61.396 63.158 0.00 0.00 38.32 3.95
1642 1986 1.669760 GGCATTCACGTCCCGTTCA 60.670 57.895 0.00 0.00 38.32 3.18
1643 1987 1.231958 GGCATTCACGTCCCGTTCAA 61.232 55.000 0.00 0.00 38.32 2.69
1644 1988 0.802494 GCATTCACGTCCCGTTCAAT 59.198 50.000 0.00 0.00 38.32 2.57
1738 2082 1.077716 GGCTACCCATCAACGGCTT 60.078 57.895 0.00 0.00 0.00 4.35
1739 2086 0.179468 GGCTACCCATCAACGGCTTA 59.821 55.000 0.00 0.00 0.00 3.09
1759 2106 3.121738 ACTTCGAACCCGTGAAGATTT 57.878 42.857 8.79 0.00 43.34 2.17
1760 2107 4.261578 ACTTCGAACCCGTGAAGATTTA 57.738 40.909 8.79 0.00 43.34 1.40
1761 2108 4.243270 ACTTCGAACCCGTGAAGATTTAG 58.757 43.478 8.79 0.00 43.34 1.85
1762 2109 4.021719 ACTTCGAACCCGTGAAGATTTAGA 60.022 41.667 8.79 0.00 43.34 2.10
1763 2110 4.730949 TCGAACCCGTGAAGATTTAGAT 57.269 40.909 0.00 0.00 37.05 1.98
1764 2111 5.080969 TCGAACCCGTGAAGATTTAGATT 57.919 39.130 0.00 0.00 37.05 2.40
1788 2135 2.943036 TTCTCCGGCTACTTTTTGGT 57.057 45.000 0.00 0.00 0.00 3.67
1814 2161 2.746277 GGTGCCATCCGTTTCGCT 60.746 61.111 0.00 0.00 0.00 4.93
1818 2165 2.038269 GCCATCCGTTTCGCTTCCA 61.038 57.895 0.00 0.00 0.00 3.53
1838 2185 9.273016 GCTTCCATTTGTATATTTCTGTAGCTA 57.727 33.333 0.00 0.00 0.00 3.32
1947 2327 2.166907 TTGACTTTGGGGGCAAAAGA 57.833 45.000 11.90 0.00 37.91 2.52
1959 2339 1.069227 GGCAAAAGAGCTAACGTGGTG 60.069 52.381 0.00 0.00 34.17 4.17
2162 2551 0.108615 GTCACTGGATGGAGTGTCGG 60.109 60.000 0.00 0.00 43.38 4.79
2179 2569 7.859875 GGAGTGTCGGTAATAGTTTCTGTATAC 59.140 40.741 0.00 0.00 0.00 1.47
2231 2621 5.865013 TGCATGATGTTCTTGCTGTATTTTG 59.135 36.000 14.12 0.00 44.77 2.44
2273 2667 5.790593 ACGTTGCTACTTTCTCAGGATTTA 58.209 37.500 0.00 0.00 0.00 1.40
2394 2788 7.148641 CCGTTTCTGTGATGATACTATAGCTT 58.851 38.462 0.00 0.00 0.00 3.74
2395 2789 7.653713 CCGTTTCTGTGATGATACTATAGCTTT 59.346 37.037 0.00 0.00 0.00 3.51
2396 2790 9.035607 CGTTTCTGTGATGATACTATAGCTTTT 57.964 33.333 0.00 0.00 0.00 2.27
2478 2879 7.201767 GGTCACAACTATGTAGTCTATACCGTT 60.202 40.741 0.00 0.00 37.82 4.44
2502 2903 3.779759 AGAGAGATGCACACGATTCTTC 58.220 45.455 0.00 0.00 0.00 2.87
2568 2969 1.201647 CTCAGCAGAAAAGCATGTGGG 59.798 52.381 0.00 0.00 36.85 4.61
2569 2970 1.202915 TCAGCAGAAAAGCATGTGGGA 60.203 47.619 0.00 0.00 36.85 4.37
2570 2971 1.822990 CAGCAGAAAAGCATGTGGGAT 59.177 47.619 0.00 0.00 36.85 3.85
2581 2982 2.240667 GCATGTGGGATGGATAGCCTAT 59.759 50.000 0.00 0.00 31.41 2.57
2589 2990 7.238723 TGTGGGATGGATAGCCTATTTATAACA 59.761 37.037 0.00 0.00 31.41 2.41
2590 2991 7.553044 GTGGGATGGATAGCCTATTTATAACAC 59.447 40.741 0.00 0.00 31.41 3.32
2592 2993 7.311675 GGGATGGATAGCCTATTTATAACACCA 60.312 40.741 0.00 0.00 31.41 4.17
2608 3009 9.575868 TTATAACACCATTCTAAGTTTGTCCAA 57.424 29.630 0.00 0.00 0.00 3.53
2706 3107 4.069304 TCTTTAAACCACCTGGAACATCG 58.931 43.478 0.00 0.00 38.20 3.84
2734 3135 7.166970 CAGCTAACTTGCGTTATCGTTCTAATA 59.833 37.037 0.00 0.00 35.23 0.98
2743 3144 5.587675 GTTATCGTTCTAATAAAGCGCTCG 58.412 41.667 12.06 6.71 0.00 5.03
2846 3248 4.637276 TCAACGATGGACTTGTACATTGT 58.363 39.130 11.95 11.95 42.09 2.71
2847 3249 5.785243 TCAACGATGGACTTGTACATTGTA 58.215 37.500 16.69 2.81 40.02 2.41
3009 3417 9.896645 ATCCAATAGCAGTTGTATATCCTATTG 57.103 33.333 9.90 9.90 40.39 1.90
3042 3450 5.765182 TCTTTGCAATATCCTAAGCTAAGGC 59.235 40.000 0.00 0.00 39.27 4.35
3043 3451 4.705110 TGCAATATCCTAAGCTAAGGCA 57.295 40.909 0.00 0.00 41.70 4.75
3088 3496 4.229096 CAAGCATTTTCAGTGCGTATGTT 58.771 39.130 0.00 0.00 46.86 2.71
3368 3776 5.295540 GGAGGAGCATTCACTTTATGAGTTC 59.704 44.000 0.00 0.00 38.99 3.01
3449 3857 3.001026 CGTTGAGTGCTGCTGATATTGAG 59.999 47.826 0.00 0.00 0.00 3.02
3566 3974 7.445945 GCATAACCAATCTCTCAGGTATACTT 58.554 38.462 2.25 0.00 34.63 2.24
3567 3975 7.386299 GCATAACCAATCTCTCAGGTATACTTG 59.614 40.741 8.64 8.64 34.63 3.16
3570 3978 5.364157 ACCAATCTCTCAGGTATACTTGACC 59.636 44.000 13.28 0.00 37.22 4.02
3571 3979 5.221541 CCAATCTCTCAGGTATACTTGACCC 60.222 48.000 13.28 0.00 37.73 4.46
3572 3980 4.883021 TCTCTCAGGTATACTTGACCCT 57.117 45.455 13.28 0.00 37.73 4.34
3573 3981 5.208294 TCTCTCAGGTATACTTGACCCTT 57.792 43.478 13.28 0.00 37.73 3.95
3574 3982 6.337185 TCTCTCAGGTATACTTGACCCTTA 57.663 41.667 13.28 0.00 37.73 2.69
3575 3983 6.366340 TCTCTCAGGTATACTTGACCCTTAG 58.634 44.000 13.28 3.86 37.73 2.18
3590 3998 2.167075 CCCTTAGAAGCTGCCCAATTTG 59.833 50.000 0.00 0.00 0.00 2.32
3600 4008 3.055167 GCTGCCCAATTTGGTATTCCTTT 60.055 43.478 14.26 0.00 35.17 3.11
3602 4010 5.159273 TGCCCAATTTGGTATTCCTTTTC 57.841 39.130 14.26 0.00 35.17 2.29
3632 4040 8.131100 CCATCATTATCACTAAAATGAGCGTTT 58.869 33.333 4.33 0.00 43.34 3.60
3692 4100 3.636300 TGGAACCATTGTGTGAGGAAAAG 59.364 43.478 0.00 0.00 0.00 2.27
3705 4113 3.909995 TGAGGAAAAGAAGATCAGGTGGA 59.090 43.478 0.00 0.00 0.00 4.02
3761 4169 0.614979 ACATGGTCGAGCTGGTACCT 60.615 55.000 16.64 0.00 34.23 3.08
3807 4222 2.754552 TGCATGTTTGAGGTAATGAGCC 59.245 45.455 0.00 0.00 0.00 4.70
3818 4233 5.880332 TGAGGTAATGAGCCACTGAATTAAC 59.120 40.000 0.00 0.00 0.00 2.01
3819 4234 5.193679 AGGTAATGAGCCACTGAATTAACC 58.806 41.667 0.00 0.00 0.00 2.85
3820 4235 4.947388 GGTAATGAGCCACTGAATTAACCA 59.053 41.667 0.00 0.00 0.00 3.67
3826 4242 5.425217 TGAGCCACTGAATTAACCATCTCTA 59.575 40.000 0.00 0.00 0.00 2.43
3854 4270 8.429493 TGCATGAAGTTTATCTGAGATGTAAG 57.571 34.615 4.96 0.00 0.00 2.34
3859 4275 9.862371 TGAAGTTTATCTGAGATGTAAGAACTC 57.138 33.333 4.96 0.00 0.00 3.01
3894 4310 3.824133 CTTCATGCAGATTATGACCCCA 58.176 45.455 0.00 0.00 34.50 4.96
3981 4397 5.532779 TGTATGTTGCCACTGTGTTTTCATA 59.467 36.000 7.08 7.69 0.00 2.15
4037 4453 9.747293 CTATATGGATATGCAGATCTAACACAG 57.253 37.037 20.04 7.66 0.00 3.66
4038 4454 4.635223 TGGATATGCAGATCTAACACAGC 58.365 43.478 20.04 2.54 0.00 4.40
4152 4569 5.811796 ATGGCATATGCAACCAAATATGT 57.188 34.783 28.07 0.00 44.36 2.29
4169 4586 5.776173 ATATGTAGGAAGTTCTGGACTCG 57.224 43.478 2.25 0.00 37.72 4.18
4181 4598 0.830023 TGGACTCGATGGTGGACACA 60.830 55.000 4.69 0.00 0.00 3.72
4331 4748 3.069443 GGAAAAGGATTGTGTTTCAGGCA 59.931 43.478 0.00 0.00 33.76 4.75
4522 4962 1.421268 TGATTGGACTTGCAGTCTGGT 59.579 47.619 13.59 0.00 44.46 4.00
4648 5088 2.479730 CGAGACCATGAACCGGTTAGAG 60.480 54.545 22.33 12.43 36.69 2.43
4772 5212 1.079197 AAGATGTCGGCGTGCATCA 60.079 52.632 31.22 16.73 42.72 3.07
4810 5250 0.979665 TCCAGCTTCTGAAGTCCAGG 59.020 55.000 17.97 13.93 43.12 4.45
4872 5315 5.659971 AGGTCCAGTATAACGAGGTAACAAT 59.340 40.000 0.00 0.00 41.41 2.71
4873 5316 6.835488 AGGTCCAGTATAACGAGGTAACAATA 59.165 38.462 0.00 0.00 41.41 1.90
4874 5317 7.342799 AGGTCCAGTATAACGAGGTAACAATAA 59.657 37.037 0.00 0.00 41.41 1.40
4885 5328 6.932400 ACGAGGTAACAATAAGTTTGTCATGA 59.068 34.615 0.00 0.00 41.64 3.07
4925 5368 1.870055 AAGGGATGCTTGCTTGTGCG 61.870 55.000 0.00 0.00 43.34 5.34
4929 5372 1.055338 GATGCTTGCTTGTGCGTTTC 58.945 50.000 0.00 0.00 43.34 2.78
4959 5403 0.549950 CTCCTTGGATGGTGCAGGAT 59.450 55.000 0.00 0.00 0.00 3.24
5202 5646 4.849329 GTCGACGGCCGCTTCGAT 62.849 66.667 34.10 13.57 45.43 3.59
5254 5698 3.613030 CTCATGTGGTGATGTGAATGGA 58.387 45.455 0.00 0.00 35.97 3.41
5260 5704 1.066143 GGTGATGTGAATGGACGAGGT 60.066 52.381 0.00 0.00 0.00 3.85
5410 5872 0.964358 AACCCAGATGCTGCTGCTTC 60.964 55.000 19.71 19.71 41.81 3.86
5430 5892 3.361977 CAACGGGGCGAAACCTGG 61.362 66.667 0.00 0.00 41.38 4.45
5461 5925 0.393808 AGGTTCGTGTGCTTGGTTGT 60.394 50.000 0.00 0.00 0.00 3.32
5462 5926 0.248458 GGTTCGTGTGCTTGGTTGTG 60.248 55.000 0.00 0.00 0.00 3.33
5463 5927 0.248458 GTTCGTGTGCTTGGTTGTGG 60.248 55.000 0.00 0.00 0.00 4.17
5464 5928 0.393132 TTCGTGTGCTTGGTTGTGGA 60.393 50.000 0.00 0.00 0.00 4.02
5465 5929 1.092921 TCGTGTGCTTGGTTGTGGAC 61.093 55.000 0.00 0.00 0.00 4.02
5466 5930 1.095228 CGTGTGCTTGGTTGTGGACT 61.095 55.000 0.00 0.00 0.00 3.85
5467 5931 1.102978 GTGTGCTTGGTTGTGGACTT 58.897 50.000 0.00 0.00 0.00 3.01
5468 5932 1.102154 TGTGCTTGGTTGTGGACTTG 58.898 50.000 0.00 0.00 0.00 3.16
5470 5934 2.294074 GTGCTTGGTTGTGGACTTGTA 58.706 47.619 0.00 0.00 0.00 2.41
5471 5935 2.290641 GTGCTTGGTTGTGGACTTGTAG 59.709 50.000 0.00 0.00 0.00 2.74
5472 5936 2.092646 TGCTTGGTTGTGGACTTGTAGT 60.093 45.455 0.00 0.00 0.00 2.73
5473 5937 3.134985 TGCTTGGTTGTGGACTTGTAGTA 59.865 43.478 0.00 0.00 0.00 1.82
5494 5958 1.676678 TACCTGACGATGCCTGCCTC 61.677 60.000 0.00 0.00 0.00 4.70
5513 5977 1.491754 TCTGTGATGATGATGGGTGGG 59.508 52.381 0.00 0.00 0.00 4.61
5517 5981 0.396435 GATGATGATGGGTGGGCGTA 59.604 55.000 0.00 0.00 0.00 4.42
5520 5984 1.692749 ATGATGGGTGGGCGTAGGT 60.693 57.895 0.00 0.00 0.00 3.08
5521 5985 1.696097 ATGATGGGTGGGCGTAGGTC 61.696 60.000 0.00 0.00 0.00 3.85
5524 5988 4.139234 GGGTGGGCGTAGGTCGTC 62.139 72.222 0.00 0.00 44.07 4.20
5527 5991 3.755628 TGGGCGTAGGTCGTCAGC 61.756 66.667 0.00 0.00 46.87 4.26
5532 5996 1.226046 CGTAGGTCGTCAGCTCGTG 60.226 63.158 0.00 0.00 34.52 4.35
5546 6010 4.918060 CGTGTGCGTGCGTGTGTG 62.918 66.667 0.00 0.00 0.00 3.82
5556 6020 2.317609 GCGTGTGTGCAAGATCGGT 61.318 57.895 0.00 0.00 34.15 4.69
5678 6143 3.733709 CAGGCTTGGAGTTGGAGTT 57.266 52.632 0.00 0.00 0.00 3.01
5679 6144 1.242076 CAGGCTTGGAGTTGGAGTTG 58.758 55.000 0.00 0.00 0.00 3.16
5683 6148 2.034685 GGCTTGGAGTTGGAGTTGTTTC 59.965 50.000 0.00 0.00 0.00 2.78
5685 6150 2.358322 TGGAGTTGGAGTTGTTTCCC 57.642 50.000 0.00 0.00 36.35 3.97
5905 6423 1.605457 CGTGACAAAGCTGACTGGCTA 60.605 52.381 0.00 0.00 42.24 3.93
6069 6587 4.151335 CGGCTCCAGAATTATGATCGAAAG 59.849 45.833 0.54 0.00 0.00 2.62
6070 6588 5.059833 GGCTCCAGAATTATGATCGAAAGT 58.940 41.667 0.54 0.00 0.00 2.66
6071 6589 6.223852 GGCTCCAGAATTATGATCGAAAGTA 58.776 40.000 0.54 0.00 0.00 2.24
6072 6590 6.367422 GGCTCCAGAATTATGATCGAAAGTAG 59.633 42.308 0.54 0.00 0.00 2.57
6073 6591 6.128688 GCTCCAGAATTATGATCGAAAGTAGC 60.129 42.308 0.54 0.00 0.00 3.58
6087 6605 3.801114 AAGTAGCGTGACATGCAGATA 57.199 42.857 21.34 2.86 31.07 1.98
6088 6606 3.801114 AGTAGCGTGACATGCAGATAA 57.199 42.857 21.34 0.00 31.07 1.75
6089 6607 3.711086 AGTAGCGTGACATGCAGATAAG 58.289 45.455 21.34 0.00 31.07 1.73
6090 6608 1.293924 AGCGTGACATGCAGATAAGC 58.706 50.000 21.34 0.00 31.07 3.09
6128 6646 3.299977 TGCCTGTGACTACGCGGT 61.300 61.111 12.47 0.00 0.00 5.68
6142 6660 1.507141 CGCGGTTGGCTAATGATCCC 61.507 60.000 0.00 0.00 40.44 3.85
6181 6722 3.739300 TCTGTACTCGCTGCTTGTTTTAC 59.261 43.478 0.00 0.00 0.00 2.01
6182 6723 2.473609 TGTACTCGCTGCTTGTTTTACG 59.526 45.455 0.00 0.00 0.00 3.18
6216 6775 0.842030 TCACATTCAGCTGACCCCCT 60.842 55.000 18.03 0.00 0.00 4.79
6217 6776 0.679002 CACATTCAGCTGACCCCCTG 60.679 60.000 18.03 11.32 0.00 4.45
6218 6777 0.842030 ACATTCAGCTGACCCCCTGA 60.842 55.000 18.03 0.00 36.38 3.86
6219 6778 0.549950 CATTCAGCTGACCCCCTGAT 59.450 55.000 18.03 1.94 37.87 2.90
6221 6780 0.620556 TTCAGCTGACCCCCTGATTC 59.379 55.000 18.03 0.00 37.87 2.52
6225 6786 2.239654 CAGCTGACCCCCTGATTCTTTA 59.760 50.000 8.42 0.00 0.00 1.85
6233 6794 3.264450 CCCCCTGATTCTTTACTGTCAGT 59.736 47.826 10.99 10.99 37.08 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.002134 ATGGGTCTGTGGAAAGGCG 60.002 57.895 0.00 0.00 0.00 5.52
32 33 1.813513 CGCAAGAAGTTGAGATGGGT 58.186 50.000 0.00 0.00 35.61 4.51
191 193 0.807667 CGGAAAGCGATGACCTGAGG 60.808 60.000 0.00 0.00 0.00 3.86
299 313 2.555448 GGGAAGGACTGGGGAAAGAAAG 60.555 54.545 0.00 0.00 0.00 2.62
310 324 2.757077 GGTGGGTGGGAAGGACTG 59.243 66.667 0.00 0.00 0.00 3.51
542 810 9.408069 GATATTGCGCATTTACTAGTTACTACT 57.592 33.333 12.75 0.00 38.44 2.57
543 811 8.363755 CGATATTGCGCATTTACTAGTTACTAC 58.636 37.037 12.75 0.00 0.00 2.73
544 812 8.443898 CGATATTGCGCATTTACTAGTTACTA 57.556 34.615 12.75 0.00 0.00 1.82
545 813 7.334574 CGATATTGCGCATTTACTAGTTACT 57.665 36.000 12.75 0.00 0.00 2.24
594 862 4.530161 AGGAGCAAATCTAGCGAGGATATT 59.470 41.667 0.00 0.00 37.01 1.28
768 1050 1.264288 CGCAGATTTTAATCCCCTCGC 59.736 52.381 0.00 0.00 36.04 5.03
769 1051 1.873591 CCGCAGATTTTAATCCCCTCG 59.126 52.381 0.00 0.00 36.04 4.63
940 1239 0.613260 CTGAAACCCCGGAGACATCA 59.387 55.000 0.73 0.00 0.00 3.07
1105 1417 2.093235 CACTAGCAGGAAGGAAGGAAGG 60.093 54.545 0.00 0.00 0.00 3.46
1108 1420 2.180276 GTCACTAGCAGGAAGGAAGGA 58.820 52.381 0.00 0.00 0.00 3.36
1109 1421 1.902508 TGTCACTAGCAGGAAGGAAGG 59.097 52.381 0.00 0.00 0.00 3.46
1121 1433 9.533253 AAAAATCAAGACCAAAAATGTCACTAG 57.467 29.630 0.00 0.00 35.15 2.57
1140 1452 6.040729 ACACCACATGAACAGATCAAAAATCA 59.959 34.615 0.00 0.00 42.54 2.57
1172 1484 2.423577 AGATACGAACACAAACTGCCC 58.576 47.619 0.00 0.00 0.00 5.36
1181 1493 2.063266 TGGCAACGAAGATACGAACAC 58.937 47.619 0.00 0.00 42.51 3.32
1198 1510 2.159254 TGCGCTTGAGGATAAAAATGGC 60.159 45.455 9.73 0.00 0.00 4.40
1216 1530 0.241749 TACCACTACCAACTCGTGCG 59.758 55.000 0.00 0.00 0.00 5.34
1317 1634 6.773638 TGCAAATAAAAAGCCCCTAATTTCA 58.226 32.000 0.00 0.00 0.00 2.69
1327 1644 4.819088 TGAAAGGGTTGCAAATAAAAAGCC 59.181 37.500 0.00 0.00 40.89 4.35
1330 1647 5.819901 CAGGTGAAAGGGTTGCAAATAAAAA 59.180 36.000 0.00 0.00 0.00 1.94
1393 1717 2.034124 GTACCACCCGGAGTTATGCTA 58.966 52.381 0.73 0.00 35.59 3.49
1559 1895 2.944349 ACTAACTGCGTACTAGCTCCTC 59.056 50.000 0.00 0.00 38.13 3.71
1578 1922 9.924010 AAGGAGATCATAAACTAGTACTGTACT 57.076 33.333 22.72 22.72 42.68 2.73
1579 1923 9.953697 CAAGGAGATCATAAACTAGTACTGTAC 57.046 37.037 9.93 9.93 0.00 2.90
1580 1924 9.696572 ACAAGGAGATCATAAACTAGTACTGTA 57.303 33.333 5.39 0.00 0.00 2.74
1581 1925 8.596781 ACAAGGAGATCATAAACTAGTACTGT 57.403 34.615 5.39 0.00 0.00 3.55
1582 1926 8.908903 AGACAAGGAGATCATAAACTAGTACTG 58.091 37.037 5.39 0.00 0.00 2.74
1583 1927 8.908903 CAGACAAGGAGATCATAAACTAGTACT 58.091 37.037 0.00 0.00 0.00 2.73
1584 1928 8.904834 TCAGACAAGGAGATCATAAACTAGTAC 58.095 37.037 0.00 0.00 0.00 2.73
1585 1929 9.647918 ATCAGACAAGGAGATCATAAACTAGTA 57.352 33.333 0.00 0.00 0.00 1.82
1634 1978 2.510613 GGGAAGTTGAATTGAACGGGA 58.489 47.619 1.98 0.00 0.00 5.14
1640 1984 1.146774 TGCCAGGGGAAGTTGAATTGA 59.853 47.619 0.00 0.00 0.00 2.57
1641 1985 1.631405 TGCCAGGGGAAGTTGAATTG 58.369 50.000 0.00 0.00 0.00 2.32
1642 1986 1.970640 GTTGCCAGGGGAAGTTGAATT 59.029 47.619 0.00 0.00 0.00 2.17
1643 1987 1.133199 TGTTGCCAGGGGAAGTTGAAT 60.133 47.619 0.00 0.00 0.00 2.57
1644 1988 0.260230 TGTTGCCAGGGGAAGTTGAA 59.740 50.000 0.00 0.00 0.00 2.69
1738 2082 3.947910 AATCTTCACGGGTTCGAAGTA 57.052 42.857 0.00 0.00 39.70 2.24
1739 2086 2.833631 AATCTTCACGGGTTCGAAGT 57.166 45.000 0.00 0.00 39.70 3.01
1759 2106 5.934402 AGTAGCCGGAGAAAAGAAATCTA 57.066 39.130 5.05 0.00 0.00 1.98
1760 2107 4.828072 AGTAGCCGGAGAAAAGAAATCT 57.172 40.909 5.05 0.00 0.00 2.40
1761 2108 5.881777 AAAGTAGCCGGAGAAAAGAAATC 57.118 39.130 5.05 0.00 0.00 2.17
1762 2109 6.447162 CAAAAAGTAGCCGGAGAAAAGAAAT 58.553 36.000 5.05 0.00 0.00 2.17
1763 2110 5.221165 CCAAAAAGTAGCCGGAGAAAAGAAA 60.221 40.000 5.05 0.00 0.00 2.52
1764 2111 4.277423 CCAAAAAGTAGCCGGAGAAAAGAA 59.723 41.667 5.05 0.00 0.00 2.52
1788 2135 1.691219 GGATGGCACCAGAAAGGGA 59.309 57.895 0.00 0.00 43.89 4.20
1814 2161 9.555727 GGTAGCTACAGAAATATACAAATGGAA 57.444 33.333 24.75 0.00 0.00 3.53
1818 2165 7.732996 ACGGGTAGCTACAGAAATATACAAAT 58.267 34.615 24.75 0.00 0.00 2.32
1838 2185 5.990120 ACTGTATAAACAACTCTACGGGT 57.010 39.130 0.00 0.00 34.49 5.28
1959 2339 2.732094 CAAAAGCAGCAGCGTGCC 60.732 61.111 11.78 0.00 46.52 5.01
2052 2437 2.993899 CCCACATGTTCGTAGACAAGTC 59.006 50.000 0.00 0.00 34.32 3.01
2055 2440 1.609580 GCCCCACATGTTCGTAGACAA 60.610 52.381 0.00 0.00 34.32 3.18
2162 2551 8.280497 CCCGCATTTGTATACAGAAACTATTAC 58.720 37.037 5.56 0.00 0.00 1.89
2179 2569 2.430546 TTGTTTGTAGCCCGCATTTG 57.569 45.000 0.00 0.00 0.00 2.32
2231 2621 6.305638 GCAACGTCCTTATTCAAAGATCAAAC 59.694 38.462 0.00 0.00 0.00 2.93
2478 2879 3.696548 AGAATCGTGTGCATCTCTCTACA 59.303 43.478 0.00 0.00 0.00 2.74
2568 2969 9.686683 AATGGTGTTATAAATAGGCTATCCATC 57.313 33.333 16.12 5.90 31.64 3.51
2569 2970 9.686683 GAATGGTGTTATAAATAGGCTATCCAT 57.313 33.333 7.63 10.37 33.11 3.41
2570 2971 8.890472 AGAATGGTGTTATAAATAGGCTATCCA 58.110 33.333 7.63 8.48 33.74 3.41
2581 2982 9.575868 TGGACAAACTTAGAATGGTGTTATAAA 57.424 29.630 0.00 0.00 0.00 1.40
2589 2990 7.219484 CATTCTTGGACAAACTTAGAATGGT 57.781 36.000 12.86 0.00 44.07 3.55
2592 2993 7.004086 TGACCATTCTTGGACAAACTTAGAAT 58.996 34.615 0.00 0.00 46.92 2.40
2618 3019 1.618837 ACGCATTCTACAGTCAGGTGT 59.381 47.619 0.00 0.00 34.21 4.16
2743 3144 9.704098 GTTCACTAAGCTTATAAAAGTGCATAC 57.296 33.333 17.75 12.67 37.94 2.39
2846 3248 5.804639 ACACTGGAGCAACTATGAATTGTA 58.195 37.500 0.00 0.00 0.00 2.41
2847 3249 4.655963 ACACTGGAGCAACTATGAATTGT 58.344 39.130 0.00 0.00 0.00 2.71
3015 3423 7.283127 CCTTAGCTTAGGATATTGCAAAGAACA 59.717 37.037 13.72 0.00 37.50 3.18
3399 3807 5.012239 TGTGATTGGATTCTTCCCTTTGAG 58.988 41.667 0.00 0.00 41.83 3.02
3449 3857 5.633830 TTGCAAACTTCTCCTTCATGATC 57.366 39.130 0.00 0.00 0.00 2.92
3566 3974 0.840288 TGGGCAGCTTCTAAGGGTCA 60.840 55.000 0.00 0.00 0.00 4.02
3567 3975 0.328258 TTGGGCAGCTTCTAAGGGTC 59.672 55.000 0.00 0.00 0.00 4.46
3570 3978 2.167075 CCAAATTGGGCAGCTTCTAAGG 59.833 50.000 3.60 0.00 32.67 2.69
3571 3979 2.827921 ACCAAATTGGGCAGCTTCTAAG 59.172 45.455 17.27 0.00 43.37 2.18
3572 3980 2.888212 ACCAAATTGGGCAGCTTCTAA 58.112 42.857 17.27 0.00 43.37 2.10
3573 3981 2.603075 ACCAAATTGGGCAGCTTCTA 57.397 45.000 17.27 0.00 43.37 2.10
3574 3982 2.603075 TACCAAATTGGGCAGCTTCT 57.397 45.000 17.27 0.00 43.37 2.85
3575 3983 3.430790 GGAATACCAAATTGGGCAGCTTC 60.431 47.826 17.27 10.42 43.37 3.86
3613 4021 4.697828 TGGCAAACGCTCATTTTAGTGATA 59.302 37.500 0.00 0.00 0.00 2.15
3632 4040 2.512692 AAATAGTGGCTGTCATGGCA 57.487 45.000 0.00 0.00 40.25 4.92
3692 4100 2.472029 TCCTTCCTCCACCTGATCTTC 58.528 52.381 0.00 0.00 0.00 2.87
3705 4113 2.819348 GCAACCAGTCCATTTCCTTCCT 60.819 50.000 0.00 0.00 0.00 3.36
3761 4169 4.082081 CCATCTGCTCCATTTTGCTTTGTA 60.082 41.667 0.00 0.00 0.00 2.41
3807 4222 7.988737 TGCAAATAGAGATGGTTAATTCAGTG 58.011 34.615 0.00 0.00 0.00 3.66
3818 4233 9.064706 AGATAAACTTCATGCAAATAGAGATGG 57.935 33.333 0.00 0.00 0.00 3.51
3819 4234 9.880064 CAGATAAACTTCATGCAAATAGAGATG 57.120 33.333 0.00 0.00 0.00 2.90
3820 4235 9.842775 TCAGATAAACTTCATGCAAATAGAGAT 57.157 29.630 0.00 0.00 0.00 2.75
3826 4242 8.289939 ACATCTCAGATAAACTTCATGCAAAT 57.710 30.769 0.00 0.00 0.00 2.32
3854 4270 7.359514 GCATGAAGCAACCAAATAAAAGAGTTC 60.360 37.037 0.00 0.00 44.79 3.01
3894 4310 1.202879 TGAACATCTGAACGGGCCTTT 60.203 47.619 0.84 0.00 0.00 3.11
4003 4419 5.362143 TCTGCATATCCATATAGTGCTCTCC 59.638 44.000 0.00 0.00 36.78 3.71
4092 4509 5.654497 TGTCACAAACACACATAATTTGCA 58.346 33.333 0.00 0.00 36.91 4.08
4103 4520 5.398603 AAATCCAAACTGTCACAAACACA 57.601 34.783 0.00 0.00 33.24 3.72
4152 4569 3.024547 CCATCGAGTCCAGAACTTCCTA 58.975 50.000 0.00 0.00 38.74 2.94
4169 4586 3.055094 ACCAATACTCTGTGTCCACCATC 60.055 47.826 0.00 0.00 0.00 3.51
4181 4598 3.695060 CACTCTCCACGTACCAATACTCT 59.305 47.826 0.00 0.00 0.00 3.24
4331 4748 7.225341 GCTTTGAGGATTTGATGAACAAGTTTT 59.775 33.333 0.00 0.00 39.77 2.43
4522 4962 3.961408 GGTCTTCACCCAAGCTAGATCTA 59.039 47.826 1.69 1.69 36.54 1.98
4810 5250 2.035783 GGAGGCAGGTTGGGGAAC 59.964 66.667 0.00 0.00 0.00 3.62
4872 5315 5.518812 GCATGTTGTGTCATGACAAACTTA 58.481 37.500 31.18 22.18 45.41 2.24
4873 5316 4.362279 GCATGTTGTGTCATGACAAACTT 58.638 39.130 31.18 26.77 45.41 2.66
4874 5317 3.968649 GCATGTTGTGTCATGACAAACT 58.031 40.909 31.18 22.31 45.41 2.66
4885 5328 2.597217 CCCACCGGCATGTTGTGT 60.597 61.111 0.00 0.00 0.00 3.72
4959 5403 4.594854 ACAATGGCGTGCCCCACA 62.595 61.111 8.69 0.00 37.79 4.17
5202 5646 0.241213 CTCTCTTCTTGACGACGGCA 59.759 55.000 0.00 0.00 0.00 5.69
5254 5698 0.391597 CCTGTACAACACCACCTCGT 59.608 55.000 0.00 0.00 0.00 4.18
5260 5704 1.073125 CCATCACCCTGTACAACACCA 59.927 52.381 0.00 0.00 0.00 4.17
5410 5872 4.038080 GGTTTCGCCCCGTTGCAG 62.038 66.667 0.00 0.00 0.00 4.41
5430 5892 3.432252 CACACGAACCTAATCAAGACCAC 59.568 47.826 0.00 0.00 0.00 4.16
5439 5902 2.552315 CAACCAAGCACACGAACCTAAT 59.448 45.455 0.00 0.00 0.00 1.73
5441 5904 1.134340 ACAACCAAGCACACGAACCTA 60.134 47.619 0.00 0.00 0.00 3.08
5461 5925 4.005650 CGTCAGGTACTACTACAAGTCCA 58.994 47.826 0.00 0.00 36.02 4.02
5462 5926 4.256920 TCGTCAGGTACTACTACAAGTCC 58.743 47.826 0.00 0.00 36.02 3.85
5463 5927 5.730010 GCATCGTCAGGTACTACTACAAGTC 60.730 48.000 0.00 0.00 36.02 3.01
5464 5928 4.096081 GCATCGTCAGGTACTACTACAAGT 59.904 45.833 0.00 0.00 36.02 3.16
5465 5929 4.497674 GGCATCGTCAGGTACTACTACAAG 60.498 50.000 0.00 0.00 36.02 3.16
5466 5930 3.379372 GGCATCGTCAGGTACTACTACAA 59.621 47.826 0.00 0.00 36.02 2.41
5467 5931 2.947652 GGCATCGTCAGGTACTACTACA 59.052 50.000 0.00 0.00 36.02 2.74
5468 5932 3.003482 CAGGCATCGTCAGGTACTACTAC 59.997 52.174 0.00 0.00 36.02 2.73
5470 5934 2.025155 CAGGCATCGTCAGGTACTACT 58.975 52.381 0.00 0.00 36.02 2.57
5471 5935 1.536284 GCAGGCATCGTCAGGTACTAC 60.536 57.143 0.00 0.00 36.02 2.73
5472 5936 0.744874 GCAGGCATCGTCAGGTACTA 59.255 55.000 0.00 0.00 36.02 1.82
5473 5937 1.517832 GCAGGCATCGTCAGGTACT 59.482 57.895 0.00 0.00 43.88 2.73
5494 5958 1.977056 CCCACCCATCATCATCACAG 58.023 55.000 0.00 0.00 0.00 3.66
5513 5977 2.277373 CGAGCTGACGACCTACGC 60.277 66.667 0.00 0.00 46.94 4.42
5517 5981 2.645567 CACACGAGCTGACGACCT 59.354 61.111 1.33 0.00 37.03 3.85
5520 5984 3.961197 ACGCACACGAGCTGACGA 61.961 61.111 1.33 0.00 43.93 4.20
5521 5985 3.756677 CACGCACACGAGCTGACG 61.757 66.667 0.00 0.00 43.93 4.35
5527 5991 4.339809 CACACGCACGCACACGAG 62.340 66.667 0.00 0.00 43.93 4.18
5532 5996 4.528740 TTGCACACACGCACGCAC 62.529 61.111 0.00 0.00 42.87 5.34
5556 6020 0.878523 CGTGAACCCGTCAAGCAAGA 60.879 55.000 0.00 0.00 38.23 3.02
5677 6142 2.289444 GGATCAGTCTGTCGGGAAACAA 60.289 50.000 0.00 0.00 0.00 2.83
5678 6143 1.275291 GGATCAGTCTGTCGGGAAACA 59.725 52.381 0.00 0.00 0.00 2.83
5679 6144 1.550976 AGGATCAGTCTGTCGGGAAAC 59.449 52.381 0.00 0.00 0.00 2.78
5683 6148 1.537638 CGATAGGATCAGTCTGTCGGG 59.462 57.143 8.17 0.00 40.51 5.14
5685 6150 1.068885 GGCGATAGGATCAGTCTGTCG 60.069 57.143 10.72 10.72 44.72 4.35
5875 6393 3.414136 TTTGTCACGGGCAGCTGGT 62.414 57.895 17.12 1.48 0.00 4.00
5876 6394 2.594303 TTTGTCACGGGCAGCTGG 60.594 61.111 17.12 0.73 0.00 4.85
5879 6397 2.980233 AGCTTTGTCACGGGCAGC 60.980 61.111 0.00 0.00 0.00 5.25
5905 6423 1.135141 GCTCTCAGCGAGTCATCAGTT 60.135 52.381 5.66 0.00 41.98 3.16
6069 6587 2.219674 GCTTATCTGCATGTCACGCTAC 59.780 50.000 0.00 0.00 0.00 3.58
6070 6588 2.159114 TGCTTATCTGCATGTCACGCTA 60.159 45.455 0.00 0.00 38.12 4.26
6071 6589 1.293924 GCTTATCTGCATGTCACGCT 58.706 50.000 0.00 0.00 0.00 5.07
6072 6590 1.004185 CTGCTTATCTGCATGTCACGC 60.004 52.381 0.00 0.00 42.48 5.34
6073 6591 2.543641 TCTGCTTATCTGCATGTCACG 58.456 47.619 0.00 0.00 42.48 4.35
6087 6605 1.003839 TGCCGGACGAAATCTGCTT 60.004 52.632 5.05 0.00 31.52 3.91
6088 6606 1.448540 CTGCCGGACGAAATCTGCT 60.449 57.895 5.05 0.00 31.52 4.24
6089 6607 3.093278 CTGCCGGACGAAATCTGC 58.907 61.111 5.05 0.00 31.52 4.26
6090 6608 1.091771 ATGCTGCCGGACGAAATCTG 61.092 55.000 5.05 0.00 0.00 2.90
6091 6609 1.091771 CATGCTGCCGGACGAAATCT 61.092 55.000 5.05 0.00 0.00 2.40
6092 6610 1.353103 CATGCTGCCGGACGAAATC 59.647 57.895 5.05 0.00 0.00 2.17
6093 6611 1.377202 ACATGCTGCCGGACGAAAT 60.377 52.632 5.05 0.00 0.00 2.17
6094 6612 2.031919 ACATGCTGCCGGACGAAA 59.968 55.556 5.05 0.00 0.00 3.46
6128 6646 6.851318 TCATGATTAAGGGATCATTAGCCAA 58.149 36.000 0.00 0.00 42.57 4.52
6142 6660 7.307042 CGAGTACAGAAGCCAATCATGATTAAG 60.307 40.741 20.32 15.32 0.00 1.85
6181 6722 7.274468 GCTGAATGTGATATATAGACAACCTCG 59.726 40.741 2.07 0.00 0.00 4.63
6182 6723 8.310382 AGCTGAATGTGATATATAGACAACCTC 58.690 37.037 0.00 1.63 0.00 3.85
6203 6762 0.252881 AGAATCAGGGGGTCAGCTGA 60.253 55.000 13.74 13.74 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.