Multiple sequence alignment - TraesCS6D01G243900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G243900 chr6D 100.000 5224 0 0 1 5224 346249524 346254747 0.000000e+00 9648.0
1 TraesCS6D01G243900 chr6D 97.605 167 4 0 1859 2025 431000180 431000014 2.380000e-73 287.0
2 TraesCS6D01G243900 chr6D 95.376 173 8 0 1859 2031 40427260 40427088 5.150000e-70 276.0
3 TraesCS6D01G243900 chr6D 96.875 32 0 1 5137 5168 6230192 6230222 9.000000e-03 52.8
4 TraesCS6D01G243900 chr6A 91.642 2740 154 25 2150 4873 497792104 497789424 0.000000e+00 3722.0
5 TraesCS6D01G243900 chr6A 91.862 897 34 9 786 1665 497793406 497792532 0.000000e+00 1216.0
6 TraesCS6D01G243900 chr6A 93.029 373 20 4 4857 5224 497752067 497751696 1.660000e-149 540.0
7 TraesCS6D01G243900 chr6A 90.821 207 11 3 1654 1860 497792392 497792194 2.400000e-68 270.0
8 TraesCS6D01G243900 chr6A 93.333 90 6 0 2022 2111 497792195 497792106 3.280000e-27 134.0
9 TraesCS6D01G243900 chr6A 96.078 51 1 1 703 753 51945168 51945217 1.210000e-11 82.4
10 TraesCS6D01G243900 chr6B 92.184 2111 118 21 2600 4688 535449684 535447599 0.000000e+00 2940.0
11 TraesCS6D01G243900 chr6B 94.270 890 37 7 972 1860 535451364 535450488 0.000000e+00 1349.0
12 TraesCS6D01G243900 chr6B 90.744 551 31 11 2022 2572 535450489 535449959 0.000000e+00 717.0
13 TraesCS6D01G243900 chr6B 95.918 147 5 1 787 933 535451506 535451361 2.430000e-58 237.0
14 TraesCS6D01G243900 chr6B 93.798 129 8 0 4811 4939 535447066 535446938 1.480000e-45 195.0
15 TraesCS6D01G243900 chr4D 96.270 697 25 1 1 697 37261053 37261748 0.000000e+00 1142.0
16 TraesCS6D01G243900 chr4D 95.936 689 27 1 7 695 291656339 291655652 0.000000e+00 1116.0
17 TraesCS6D01G243900 chr1D 95.506 712 31 1 1 712 19557575 19558285 0.000000e+00 1136.0
18 TraesCS6D01G243900 chr1D 94.803 712 32 4 1 711 235668744 235669451 0.000000e+00 1105.0
19 TraesCS6D01G243900 chr1D 97.006 167 5 0 1858 2024 140137146 140136980 1.110000e-71 281.0
20 TraesCS6D01G243900 chr1D 97.561 41 1 0 711 751 223348518 223348478 2.610000e-08 71.3
21 TraesCS6D01G243900 chr1D 100.000 29 0 0 1120 1148 411124098 411124126 3.000000e-03 54.7
22 TraesCS6D01G243900 chr2A 95.238 714 32 2 1 712 20012016 20011303 0.000000e+00 1129.0
23 TraesCS6D01G243900 chr2A 97.006 167 5 0 1857 2023 389221005 389221171 1.110000e-71 281.0
24 TraesCS6D01G243900 chr2A 100.000 29 0 0 1120 1148 591660904 591660932 3.000000e-03 54.7
25 TraesCS6D01G243900 chr3D 95.448 703 30 2 7 709 156248521 156247821 0.000000e+00 1120.0
26 TraesCS6D01G243900 chr3D 95.055 182 6 1 1855 2036 2350728 2350550 3.080000e-72 283.0
27 TraesCS6D01G243900 chr3D 95.402 174 7 1 1851 2023 550509423 550509596 5.150000e-70 276.0
28 TraesCS6D01G243900 chr3D 96.970 33 1 0 5146 5178 97118251 97118219 7.310000e-04 56.5
29 TraesCS6D01G243900 chr2D 94.937 711 35 1 1 711 116622710 116622001 0.000000e+00 1112.0
30 TraesCS6D01G243900 chr2D 95.082 183 7 2 1858 2040 651636971 651636791 2.380000e-73 287.0
31 TraesCS6D01G243900 chr2D 96.875 32 0 1 1121 1151 34559282 34559251 9.000000e-03 52.8
32 TraesCS6D01G243900 chr5D 94.670 713 34 4 1 712 501410714 501410005 0.000000e+00 1103.0
33 TraesCS6D01G243900 chr5D 92.473 186 13 1 1858 2043 276150795 276150611 1.120000e-66 265.0
34 TraesCS6D01G243900 chr5D 96.970 33 0 1 1120 1151 159298775 159298807 3.000000e-03 54.7
35 TraesCS6D01G243900 chr3A 94.553 716 34 5 1 715 734026543 734027254 0.000000e+00 1101.0
36 TraesCS6D01G243900 chr7D 94.350 177 10 0 1848 2024 312574117 312574293 6.670000e-69 272.0
37 TraesCS6D01G243900 chr1B 95.918 49 1 1 703 751 255515673 255515720 1.560000e-10 78.7
38 TraesCS6D01G243900 chr1B 100.000 32 0 0 5143 5174 28124914 28124883 5.650000e-05 60.2
39 TraesCS6D01G243900 chr1B 97.143 35 0 1 5140 5174 28119947 28119914 2.030000e-04 58.4
40 TraesCS6D01G243900 chr1B 96.970 33 0 1 5141 5173 28117830 28117799 3.000000e-03 54.7
41 TraesCS6D01G243900 chr5B 95.652 46 1 1 711 756 569244246 569244290 7.260000e-09 73.1
42 TraesCS6D01G243900 chr5B 100.000 28 0 0 5146 5173 704604593 704604566 9.000000e-03 52.8
43 TraesCS6D01G243900 chr1A 92.157 51 2 1 703 751 527022848 527022898 2.610000e-08 71.3
44 TraesCS6D01G243900 chr7B 82.500 80 11 2 5146 5224 669242956 669243033 3.380000e-07 67.6
45 TraesCS6D01G243900 chr7B 82.500 80 11 2 5146 5224 669303949 669304026 3.380000e-07 67.6
46 TraesCS6D01G243900 chr7B 96.875 32 0 1 1121 1151 1936822 1936791 9.000000e-03 52.8
47 TraesCS6D01G243900 chr3B 96.970 33 1 0 5146 5178 147939390 147939358 7.310000e-04 56.5
48 TraesCS6D01G243900 chrUn 96.875 32 0 1 1121 1151 172379929 172379898 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G243900 chr6D 346249524 346254747 5223 False 9648.0 9648 100.0000 1 5224 1 chr6D.!!$F2 5223
1 TraesCS6D01G243900 chr6A 497789424 497793406 3982 True 1335.5 3722 91.9145 786 4873 4 chr6A.!!$R2 4087
2 TraesCS6D01G243900 chr6B 535446938 535451506 4568 True 1087.6 2940 93.3828 787 4939 5 chr6B.!!$R1 4152
3 TraesCS6D01G243900 chr4D 37261053 37261748 695 False 1142.0 1142 96.2700 1 697 1 chr4D.!!$F1 696
4 TraesCS6D01G243900 chr4D 291655652 291656339 687 True 1116.0 1116 95.9360 7 695 1 chr4D.!!$R1 688
5 TraesCS6D01G243900 chr1D 19557575 19558285 710 False 1136.0 1136 95.5060 1 712 1 chr1D.!!$F1 711
6 TraesCS6D01G243900 chr1D 235668744 235669451 707 False 1105.0 1105 94.8030 1 711 1 chr1D.!!$F2 710
7 TraesCS6D01G243900 chr2A 20011303 20012016 713 True 1129.0 1129 95.2380 1 712 1 chr2A.!!$R1 711
8 TraesCS6D01G243900 chr3D 156247821 156248521 700 True 1120.0 1120 95.4480 7 709 1 chr3D.!!$R3 702
9 TraesCS6D01G243900 chr2D 116622001 116622710 709 True 1112.0 1112 94.9370 1 711 1 chr2D.!!$R2 710
10 TraesCS6D01G243900 chr5D 501410005 501410714 709 True 1103.0 1103 94.6700 1 712 1 chr5D.!!$R2 711
11 TraesCS6D01G243900 chr3A 734026543 734027254 711 False 1101.0 1101 94.5530 1 715 1 chr3A.!!$F1 714

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
780 784 0.036164 AAACTCTGGCGTGCCACATA 59.964 50.0 10.06 0.0 41.89 2.29 F
1420 1431 0.167908 TTTCCATTTGCGTGCTAGCG 59.832 50.0 10.77 0.0 40.67 4.26 F
2186 2359 0.995803 TGGGGATTTGGGACGATGAA 59.004 50.0 0.00 0.0 0.00 2.57 F
3032 3453 1.913778 TGTTGAATGCAGCACTCCAT 58.086 45.0 0.42 0.0 29.77 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2007 2180 0.033306 GTCCTACTCCCTCCGTTCCT 60.033 60.0 0.0 0.0 0.00 3.36 R
3249 3671 0.106769 TGAGGCACAAAAGCAGGTCA 60.107 50.0 0.0 0.0 35.83 4.02 R
3250 3672 0.595095 CTGAGGCACAAAAGCAGGTC 59.405 55.0 0.0 0.0 35.83 3.85 R
4954 5864 0.033208 TTCATCCAGCCCATCCAACC 60.033 55.0 0.0 0.0 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 157 5.104900 ACTTCGGGCTATTGTGTCTATCTTT 60.105 40.000 0.00 0.00 0.00 2.52
215 216 1.079750 GGTCTCTCGTTCCAGTGCC 60.080 63.158 0.00 0.00 0.00 5.01
447 448 1.467374 GCCATATTCGCGTTTTGCACT 60.467 47.619 5.77 0.00 46.97 4.40
498 499 3.134127 CCAAGGGCTTGCCTACGC 61.134 66.667 11.71 0.00 39.16 4.42
538 539 1.597854 CCAGTCTTTGCGTCAGCCA 60.598 57.895 0.00 0.00 44.33 4.75
609 613 1.858739 TTCTGTATTGGGCCCGCCTT 61.859 55.000 19.37 3.85 36.10 4.35
615 619 1.984288 ATTGGGCCCGCCTTCTAGTC 61.984 60.000 19.37 0.00 36.10 2.59
712 716 8.501580 CATCGTGCAATCATAATCTTCTACAAT 58.498 33.333 0.00 0.00 0.00 2.71
714 718 7.041848 TCGTGCAATCATAATCTTCTACAATGG 60.042 37.037 0.00 0.00 0.00 3.16
715 719 7.041848 CGTGCAATCATAATCTTCTACAATGGA 60.042 37.037 0.00 0.00 0.00 3.41
716 720 8.623903 GTGCAATCATAATCTTCTACAATGGAA 58.376 33.333 0.00 0.00 0.00 3.53
717 721 9.358406 TGCAATCATAATCTTCTACAATGGAAT 57.642 29.630 0.00 0.00 0.00 3.01
718 722 9.837525 GCAATCATAATCTTCTACAATGGAATC 57.162 33.333 0.00 0.00 0.00 2.52
722 726 9.551734 TCATAATCTTCTACAATGGAATCACAG 57.448 33.333 0.00 0.00 0.00 3.66
723 727 6.690194 AATCTTCTACAATGGAATCACAGC 57.310 37.500 0.00 0.00 0.00 4.40
724 728 5.164620 TCTTCTACAATGGAATCACAGCA 57.835 39.130 0.00 0.00 0.00 4.41
725 729 5.181009 TCTTCTACAATGGAATCACAGCAG 58.819 41.667 0.00 0.00 0.00 4.24
726 730 3.273434 TCTACAATGGAATCACAGCAGC 58.727 45.455 0.00 0.00 0.00 5.25
727 731 2.211250 ACAATGGAATCACAGCAGCT 57.789 45.000 0.00 0.00 0.00 4.24
728 732 2.089980 ACAATGGAATCACAGCAGCTC 58.910 47.619 0.00 0.00 0.00 4.09
729 733 2.290768 ACAATGGAATCACAGCAGCTCT 60.291 45.455 0.00 0.00 0.00 4.09
730 734 2.328819 ATGGAATCACAGCAGCTCTC 57.671 50.000 0.00 0.00 0.00 3.20
731 735 0.251354 TGGAATCACAGCAGCTCTCC 59.749 55.000 0.00 0.00 0.00 3.71
732 736 0.540923 GGAATCACAGCAGCTCTCCT 59.459 55.000 0.00 0.00 0.00 3.69
733 737 1.654317 GAATCACAGCAGCTCTCCTG 58.346 55.000 0.00 4.47 44.67 3.86
743 747 1.346062 AGCTCTCCTGCTGTCTTTCA 58.654 50.000 0.00 0.00 42.33 2.69
744 748 1.696336 AGCTCTCCTGCTGTCTTTCAA 59.304 47.619 0.00 0.00 42.33 2.69
745 749 2.105477 AGCTCTCCTGCTGTCTTTCAAA 59.895 45.455 0.00 0.00 42.33 2.69
746 750 2.880890 GCTCTCCTGCTGTCTTTCAAAA 59.119 45.455 0.00 0.00 0.00 2.44
747 751 3.316308 GCTCTCCTGCTGTCTTTCAAAAA 59.684 43.478 0.00 0.00 0.00 1.94
774 778 3.461843 CAGAAAAACTCTGGCGTGC 57.538 52.632 0.00 0.00 46.89 5.34
775 779 0.040067 CAGAAAAACTCTGGCGTGCC 60.040 55.000 3.30 3.30 46.89 5.01
776 780 0.465460 AGAAAAACTCTGGCGTGCCA 60.465 50.000 13.82 13.82 45.02 4.92
777 781 0.317854 GAAAAACTCTGGCGTGCCAC 60.318 55.000 10.06 0.00 41.89 5.01
778 782 1.034838 AAAAACTCTGGCGTGCCACA 61.035 50.000 10.06 0.00 41.89 4.17
779 783 0.823356 AAAACTCTGGCGTGCCACAT 60.823 50.000 10.06 0.00 41.89 3.21
780 784 0.036164 AAACTCTGGCGTGCCACATA 59.964 50.000 10.06 0.00 41.89 2.29
781 785 0.673644 AACTCTGGCGTGCCACATAC 60.674 55.000 10.06 0.00 41.89 2.39
782 786 1.079197 CTCTGGCGTGCCACATACA 60.079 57.895 10.06 0.00 41.89 2.29
783 787 0.462581 CTCTGGCGTGCCACATACAT 60.463 55.000 10.06 0.00 41.89 2.29
784 788 0.827368 TCTGGCGTGCCACATACATA 59.173 50.000 10.06 0.00 41.89 2.29
1081 1088 4.072088 GGCGCCGTTGTCTTGTCG 62.072 66.667 12.58 0.00 0.00 4.35
1121 1128 0.872021 CGAGGCGCATTAGGAGTCAC 60.872 60.000 10.83 0.00 0.00 3.67
1122 1129 0.530870 GAGGCGCATTAGGAGTCACC 60.531 60.000 10.83 0.00 39.35 4.02
1123 1130 1.883084 GGCGCATTAGGAGTCACCG 60.883 63.158 10.83 0.00 44.74 4.94
1124 1131 2.526120 GCGCATTAGGAGTCACCGC 61.526 63.158 0.30 0.00 44.74 5.68
1125 1132 1.883084 CGCATTAGGAGTCACCGCC 60.883 63.158 0.00 0.00 44.74 6.13
1126 1133 1.522569 GCATTAGGAGTCACCGCCT 59.477 57.895 0.00 0.00 43.97 5.52
1297 1308 1.988015 CCGGCCTTCCTTAGTTCCA 59.012 57.895 0.00 0.00 0.00 3.53
1420 1431 0.167908 TTTCCATTTGCGTGCTAGCG 59.832 50.000 10.77 0.00 40.67 4.26
1811 1984 8.979574 AGTTCTTTCAGAGTAACAACGAATTAG 58.020 33.333 0.00 0.00 0.00 1.73
1813 1986 7.152645 TCTTTCAGAGTAACAACGAATTAGCT 58.847 34.615 0.00 0.00 0.00 3.32
1816 1989 8.997621 TTCAGAGTAACAACGAATTAGCTATT 57.002 30.769 0.00 0.00 0.00 1.73
1857 2030 4.564769 CCTCAGAAAGCACGTCTTAGAATC 59.435 45.833 0.00 0.00 33.88 2.52
1860 2033 6.323266 TCAGAAAGCACGTCTTAGAATCTAC 58.677 40.000 0.00 0.00 33.88 2.59
1861 2034 6.151312 TCAGAAAGCACGTCTTAGAATCTACT 59.849 38.462 0.00 0.00 33.88 2.57
1862 2035 6.470877 CAGAAAGCACGTCTTAGAATCTACTC 59.529 42.308 0.00 0.00 33.88 2.59
1863 2036 4.904253 AGCACGTCTTAGAATCTACTCC 57.096 45.455 0.00 0.00 0.00 3.85
1864 2037 3.633065 AGCACGTCTTAGAATCTACTCCC 59.367 47.826 0.00 0.00 0.00 4.30
1865 2038 3.633065 GCACGTCTTAGAATCTACTCCCT 59.367 47.826 0.00 0.00 0.00 4.20
1866 2039 4.261280 GCACGTCTTAGAATCTACTCCCTC 60.261 50.000 0.00 0.00 0.00 4.30
1867 2040 4.276431 CACGTCTTAGAATCTACTCCCTCC 59.724 50.000 0.00 0.00 0.00 4.30
1868 2041 3.499157 CGTCTTAGAATCTACTCCCTCCG 59.501 52.174 0.00 0.00 0.00 4.63
1869 2042 4.463070 GTCTTAGAATCTACTCCCTCCGT 58.537 47.826 0.00 0.00 0.00 4.69
1870 2043 4.888823 GTCTTAGAATCTACTCCCTCCGTT 59.111 45.833 0.00 0.00 0.00 4.44
1871 2044 5.008911 GTCTTAGAATCTACTCCCTCCGTTC 59.991 48.000 0.00 0.00 0.00 3.95
1872 2045 2.668625 AGAATCTACTCCCTCCGTTCC 58.331 52.381 0.00 0.00 0.00 3.62
1873 2046 2.245287 AGAATCTACTCCCTCCGTTCCT 59.755 50.000 0.00 0.00 0.00 3.36
1874 2047 3.462579 AGAATCTACTCCCTCCGTTCCTA 59.537 47.826 0.00 0.00 0.00 2.94
1875 2048 3.967467 ATCTACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
1876 2049 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
1877 2050 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
1878 2051 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
1879 2052 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
1880 2053 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
1881 2054 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
1882 2055 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1883 2056 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1884 2057 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1885 2058 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1886 2059 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1887 2060 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1888 2061 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
1889 2062 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
1917 2090 8.909708 ACATTTCAAATGGAATACAACATACG 57.090 30.769 14.70 0.00 34.91 3.06
1918 2091 7.973388 ACATTTCAAATGGAATACAACATACGG 59.027 33.333 14.70 0.00 34.91 4.02
1919 2092 7.689446 TTTCAAATGGAATACAACATACGGA 57.311 32.000 0.00 0.00 34.91 4.69
1920 2093 7.873719 TTCAAATGGAATACAACATACGGAT 57.126 32.000 0.00 0.00 0.00 4.18
1921 2094 7.258022 TCAAATGGAATACAACATACGGATG 57.742 36.000 5.94 5.94 39.16 3.51
1923 2096 7.988028 TCAAATGGAATACAACATACGGATGTA 59.012 33.333 15.10 0.00 45.93 2.29
1924 2097 8.783093 CAAATGGAATACAACATACGGATGTAT 58.217 33.333 15.10 8.21 45.93 2.29
1961 2134 6.690194 AGAGTGTAGATTCATCCATTTTGC 57.310 37.500 0.00 0.00 0.00 3.68
1962 2135 6.421485 AGAGTGTAGATTCATCCATTTTGCT 58.579 36.000 0.00 0.00 0.00 3.91
1963 2136 6.888632 AGAGTGTAGATTCATCCATTTTGCTT 59.111 34.615 0.00 0.00 0.00 3.91
1964 2137 7.066766 AGAGTGTAGATTCATCCATTTTGCTTC 59.933 37.037 0.00 0.00 0.00 3.86
1965 2138 5.967674 GTGTAGATTCATCCATTTTGCTTCG 59.032 40.000 0.00 0.00 0.00 3.79
1966 2139 5.647658 TGTAGATTCATCCATTTTGCTTCGT 59.352 36.000 0.00 0.00 0.00 3.85
1967 2140 6.821160 TGTAGATTCATCCATTTTGCTTCGTA 59.179 34.615 0.00 0.00 0.00 3.43
1968 2141 6.949352 AGATTCATCCATTTTGCTTCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
1969 2142 6.732154 AGATTCATCCATTTTGCTTCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
1970 2143 5.895636 TTCATCCATTTTGCTTCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
1971 2144 6.993786 TTCATCCATTTTGCTTCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
1972 2145 6.603237 TCATCCATTTTGCTTCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
1973 2146 6.112734 TCATCCATTTTGCTTCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
1974 2147 6.257849 TCATCCATTTTGCTTCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
1975 2148 5.483811 TCCATTTTGCTTCGTATGTAGTCA 58.516 37.500 0.00 0.00 0.00 3.41
1976 2149 5.350365 TCCATTTTGCTTCGTATGTAGTCAC 59.650 40.000 0.00 0.00 0.00 3.67
1977 2150 5.351465 CCATTTTGCTTCGTATGTAGTCACT 59.649 40.000 0.00 0.00 0.00 3.41
1978 2151 6.128282 CCATTTTGCTTCGTATGTAGTCACTT 60.128 38.462 0.00 0.00 0.00 3.16
1979 2152 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
1980 2153 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
1981 2154 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
1982 2155 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
1983 2156 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
1984 2157 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
1985 2158 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
1986 2159 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
1987 2160 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
1988 2161 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
1989 2162 7.541091 TCGTATGTAGTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 35.39 2.75
1990 2163 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
1991 2164 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
1992 2165 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
1993 2166 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
1994 2167 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
1995 2168 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
1996 2169 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
1997 2170 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
1998 2171 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
1999 2172 8.424918 TCACTTGTTGAAATCTCTAGAAAGACT 58.575 33.333 0.00 0.00 0.00 3.24
2000 2173 9.050601 CACTTGTTGAAATCTCTAGAAAGACTT 57.949 33.333 0.00 0.00 0.00 3.01
2017 2190 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
2018 2191 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2019 2192 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2020 2193 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2021 2194 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2022 2195 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2058 2231 1.002468 CACTGCAAGAAAACTCGGTGG 60.002 52.381 0.00 0.00 37.43 4.61
2089 2262 2.093306 TGAACATGTTGGACTAGCCG 57.907 50.000 17.58 0.00 40.66 5.52
2143 2316 7.533967 TGGACCATTGGGAATGATTCAATATA 58.466 34.615 7.78 0.00 41.46 0.86
2146 2319 7.538402 ACCATTGGGAATGATTCAATATAGGT 58.462 34.615 7.78 4.83 41.46 3.08
2153 2326 7.869429 GGGAATGATTCAATATAGGTTTGCAAG 59.131 37.037 7.56 0.00 0.00 4.01
2162 2335 8.511321 TCAATATAGGTTTGCAAGTTGTTAGTG 58.489 33.333 4.48 1.11 0.00 2.74
2165 2338 5.852282 AGGTTTGCAAGTTGTTAGTGATT 57.148 34.783 4.48 0.00 0.00 2.57
2173 2346 5.256474 CAAGTTGTTAGTGATTCTGGGGAT 58.744 41.667 0.00 0.00 0.00 3.85
2174 2347 5.520748 AGTTGTTAGTGATTCTGGGGATT 57.479 39.130 0.00 0.00 0.00 3.01
2183 2356 1.295020 TTCTGGGGATTTGGGACGAT 58.705 50.000 0.00 0.00 0.00 3.73
2186 2359 0.995803 TGGGGATTTGGGACGATGAA 59.004 50.000 0.00 0.00 0.00 2.57
2190 2363 3.434453 GGGGATTTGGGACGATGAATACA 60.434 47.826 0.00 0.00 0.00 2.29
2192 2365 3.251004 GGATTTGGGACGATGAATACAGC 59.749 47.826 0.00 0.00 0.00 4.40
2343 2516 3.306156 GGCTTAGAGAAAGAGGTCACGTT 60.306 47.826 0.00 0.00 37.38 3.99
2371 2544 9.949377 CTCGACTATCATTTGATGAAATAATCG 57.051 33.333 3.30 0.00 43.50 3.34
2372 2545 9.476202 TCGACTATCATTTGATGAAATAATCGT 57.524 29.630 3.30 0.00 43.50 3.73
2554 2728 5.642491 GGTCATAGACCCTTACAAACAAGTC 59.358 44.000 4.85 0.00 46.19 3.01
2557 2731 2.158871 AGACCCTTACAAACAAGTCGCA 60.159 45.455 0.00 0.00 0.00 5.10
2589 2776 7.513371 TTATTAGCCTAAGTCTGAGCTCTAC 57.487 40.000 16.19 13.02 36.79 2.59
2705 3126 6.296026 ACAACTACAGTTTGAGATGGCTAAA 58.704 36.000 0.00 0.00 35.83 1.85
2756 3177 5.518848 TTATAATTGATGCAAGCTGTGGG 57.481 39.130 0.00 0.00 0.00 4.61
2879 3300 6.209986 TCATCAAGCAGGAAAACATTTCAGAT 59.790 34.615 5.32 0.00 0.00 2.90
2940 3361 7.335627 TCTTTCTTTCTGTAACTCCTTTGTCA 58.664 34.615 0.00 0.00 0.00 3.58
2954 3375 5.301555 TCCTTTGTCACACACGATTAATGA 58.698 37.500 0.00 0.00 0.00 2.57
2999 3420 9.747898 TCCTTTATAGCTTTTTCCTGTGATTAA 57.252 29.630 0.00 0.00 0.00 1.40
3032 3453 1.913778 TGTTGAATGCAGCACTCCAT 58.086 45.000 0.42 0.00 29.77 3.41
3034 3455 2.029739 TGTTGAATGCAGCACTCCATTG 60.030 45.455 0.42 0.00 32.20 2.82
3065 3487 2.159517 CCTGTTGTTTCAGGCGATTAGC 60.160 50.000 0.00 0.00 46.53 3.09
3188 3610 3.574826 GCTGTAAGGGTCCTACTGGATAG 59.425 52.174 0.00 0.00 45.29 2.08
3190 3612 5.692242 GCTGTAAGGGTCCTACTGGATAGTA 60.692 48.000 0.00 0.00 45.29 1.82
3285 3707 5.880332 GTGCCTCAGTTGTTCCTTGATTATA 59.120 40.000 0.00 0.00 0.00 0.98
3334 3756 2.099141 TGCTCCACATTCTACTGTGC 57.901 50.000 0.00 0.00 44.16 4.57
3453 3875 1.336795 TGTCCGCTATCACACACACAG 60.337 52.381 0.00 0.00 0.00 3.66
3454 3876 0.246360 TCCGCTATCACACACACAGG 59.754 55.000 0.00 0.00 0.00 4.00
3456 3878 0.246360 CGCTATCACACACACAGGGA 59.754 55.000 0.00 0.00 0.00 4.20
3457 3879 1.337728 CGCTATCACACACACAGGGAA 60.338 52.381 0.00 0.00 0.00 3.97
3459 3881 2.484264 GCTATCACACACACAGGGAAAC 59.516 50.000 0.00 0.00 0.00 2.78
3460 3882 1.593196 ATCACACACACAGGGAAACG 58.407 50.000 0.00 0.00 0.00 3.60
3461 3883 0.537653 TCACACACACAGGGAAACGA 59.462 50.000 0.00 0.00 0.00 3.85
3462 3884 1.140052 TCACACACACAGGGAAACGAT 59.860 47.619 0.00 0.00 0.00 3.73
3464 3886 2.478894 CACACACACAGGGAAACGATAC 59.521 50.000 0.00 0.00 0.00 2.24
3511 3939 6.183360 CCTTTTAAGGTGCTTTCTGGAAAAGA 60.183 38.462 0.15 0.00 41.41 2.52
3541 3969 4.159135 AGCTTTGCCTCATGAACTTAATGG 59.841 41.667 0.00 0.00 0.00 3.16
3589 4017 9.942850 AAAAATTTGTAGCTTATGTTATTGCCT 57.057 25.926 0.00 0.00 0.00 4.75
3590 4018 9.942850 AAAATTTGTAGCTTATGTTATTGCCTT 57.057 25.926 0.00 0.00 0.00 4.35
3591 4019 9.942850 AAATTTGTAGCTTATGTTATTGCCTTT 57.057 25.926 0.00 0.00 0.00 3.11
3592 4020 9.586435 AATTTGTAGCTTATGTTATTGCCTTTC 57.414 29.630 0.00 0.00 0.00 2.62
3633 4061 6.752168 AGTTTGCATCAACAAGCTTCTTTAT 58.248 32.000 0.00 0.00 37.79 1.40
3645 4082 9.553064 AACAAGCTTCTTTATCTGTATCCATAG 57.447 33.333 0.00 0.00 0.00 2.23
3646 4083 8.709308 ACAAGCTTCTTTATCTGTATCCATAGT 58.291 33.333 0.00 0.00 0.00 2.12
3654 4091 7.496529 TTATCTGTATCCATAGTTTTGCAGC 57.503 36.000 0.00 0.00 0.00 5.25
3656 4093 5.439721 TCTGTATCCATAGTTTTGCAGCAT 58.560 37.500 0.00 0.00 0.00 3.79
3657 4094 6.591001 TCTGTATCCATAGTTTTGCAGCATA 58.409 36.000 0.00 0.00 0.00 3.14
3658 4095 7.053498 TCTGTATCCATAGTTTTGCAGCATAA 58.947 34.615 0.00 0.00 0.00 1.90
3659 4096 7.555914 TCTGTATCCATAGTTTTGCAGCATAAA 59.444 33.333 0.00 0.00 0.00 1.40
3660 4097 7.479980 TGTATCCATAGTTTTGCAGCATAAAC 58.520 34.615 18.18 18.18 35.10 2.01
3661 4098 6.780457 ATCCATAGTTTTGCAGCATAAACT 57.220 33.333 25.61 25.61 44.38 2.66
3662 4099 6.588719 TCCATAGTTTTGCAGCATAAACTT 57.411 33.333 26.63 17.51 40.64 2.66
3686 4123 0.507785 CTAGTCGCTACCGCTCTACG 59.492 60.000 0.00 0.00 43.15 3.51
3705 4142 6.110707 TCTACGTAGGCCAAAAGGATAAAAG 58.889 40.000 22.01 0.00 0.00 2.27
3707 4144 4.698780 ACGTAGGCCAAAAGGATAAAAGTC 59.301 41.667 5.01 0.00 0.00 3.01
3769 4206 4.014075 TCCTTCGCCCTGGGGGTA 62.014 66.667 26.94 18.12 46.51 3.69
3777 4214 1.191535 GCCCTGGGGGTATTTTTGTC 58.808 55.000 16.03 0.00 46.51 3.18
3813 4250 2.107204 AGCAGATGTTCTTCCACCAGTT 59.893 45.455 0.00 0.00 0.00 3.16
3895 4332 7.404980 ACCCACAAATAGTTCTCTTTATAGGGA 59.595 37.037 0.00 0.00 33.39 4.20
3951 4388 9.936329 AACCATGGTAGGTATTTAGAATTGATT 57.064 29.630 20.12 0.00 42.25 2.57
3987 4424 2.492025 ACCTCCATATTGGCAGAAGGA 58.508 47.619 6.13 3.73 37.47 3.36
4007 4444 8.328014 AGAAGGAAGATTAAGCTTCAGAGAATT 58.672 33.333 29.05 15.67 44.71 2.17
4043 4480 8.621532 ATTTACAGATTCACTTTGCTCAACTA 57.378 30.769 0.00 0.00 0.00 2.24
4051 4488 3.498397 CACTTTGCTCAACTATGTTCCGT 59.502 43.478 0.00 0.00 0.00 4.69
4054 4491 2.683968 TGCTCAACTATGTTCCGTCAC 58.316 47.619 0.00 0.00 0.00 3.67
4100 4537 5.220557 TGCAGTACATTGATCAAATCACG 57.779 39.130 13.09 7.82 39.39 4.35
4148 4585 5.728471 CTGGAGCTTGAAGATCTTTGTAGA 58.272 41.667 9.87 0.00 30.02 2.59
4239 4676 8.934507 AGCAAGCTAGTTAAATAACTACAGAG 57.065 34.615 8.59 3.50 44.18 3.35
4247 4684 7.612677 AGTTAAATAACTACAGAGTCACCTGG 58.387 38.462 4.05 0.00 44.18 4.45
4249 4686 6.681729 AAATAACTACAGAGTCACCTGGAA 57.318 37.500 0.00 0.00 38.44 3.53
4257 4694 4.115516 CAGAGTCACCTGGAACATTATCG 58.884 47.826 0.00 0.00 38.20 2.92
4296 4733 6.925610 ATGCATTGTAAGTCGTGAATACAT 57.074 33.333 0.00 0.00 30.29 2.29
4298 4735 5.005299 TGCATTGTAAGTCGTGAATACATCG 59.995 40.000 0.00 0.00 30.29 3.84
4344 4781 5.934402 TGTACCTCAGTTTATCTTCCCTC 57.066 43.478 0.00 0.00 0.00 4.30
4350 4787 5.301805 CCTCAGTTTATCTTCCCTCTCTCTC 59.698 48.000 0.00 0.00 0.00 3.20
4362 4799 8.061920 TCTTCCCTCTCTCTCATTCTAAATGTA 58.938 37.037 0.04 0.00 0.00 2.29
4393 4831 1.374758 CAGGTTCCTCGTGAGCCAC 60.375 63.158 11.65 0.00 46.29 5.01
4489 4927 6.038985 CACTGACGTCATAGTGAGATTGATT 58.961 40.000 25.69 0.00 45.46 2.57
4617 5059 2.863809 TGATCGCCTAGCAGAGATGTA 58.136 47.619 0.00 0.00 0.00 2.29
4629 5071 5.265191 AGCAGAGATGTAGGACTGTCTTAA 58.735 41.667 7.85 0.00 33.57 1.85
4687 5585 0.900647 CTCGGTTCCTGACCTCACCT 60.901 60.000 0.00 0.00 46.92 4.00
4688 5586 0.471211 TCGGTTCCTGACCTCACCTT 60.471 55.000 0.00 0.00 46.92 3.50
4689 5587 0.396811 CGGTTCCTGACCTCACCTTT 59.603 55.000 0.00 0.00 46.92 3.11
4690 5588 1.878102 CGGTTCCTGACCTCACCTTTG 60.878 57.143 0.00 0.00 46.92 2.77
4691 5589 1.420138 GGTTCCTGACCTCACCTTTGA 59.580 52.381 0.00 0.00 45.55 2.69
4692 5590 5.970095 CGGTTCCTGACCTCACCTTTGAG 62.970 56.522 0.00 0.00 46.92 3.02
4701 5599 0.771127 TCACCTTTGAGACCCCTTGG 59.229 55.000 0.00 0.00 37.80 3.61
4710 5608 2.123033 ACCCCTTGGTTTGGGCAC 60.123 61.111 0.00 0.00 44.75 5.01
4748 5646 8.142994 TGTAGACTCAAGTTTGTTGAAATCTC 57.857 34.615 5.05 1.11 30.87 2.75
4750 5648 6.049149 AGACTCAAGTTTGTTGAAATCTCGA 58.951 36.000 0.00 0.00 0.00 4.04
4874 5784 7.748691 ACCGTAAAATTTATGTGGTAACTGT 57.251 32.000 4.49 0.00 37.61 3.55
4880 5790 7.833285 AAATTTATGTGGTAACTGTCCAAGT 57.167 32.000 0.00 0.00 42.60 3.16
4886 5796 4.020573 TGTGGTAACTGTCCAAGTCCTATG 60.021 45.833 0.00 0.00 38.56 2.23
4887 5797 3.055385 TGGTAACTGTCCAAGTCCTATGC 60.055 47.826 0.00 0.00 38.56 3.14
4918 5828 1.129811 GTACTTGAAAACGGCCCATCG 59.870 52.381 0.00 0.00 0.00 3.84
4939 5849 0.912486 GGCCCATACACAAGAGGAGT 59.088 55.000 0.00 0.00 0.00 3.85
4940 5850 2.116238 GGCCCATACACAAGAGGAGTA 58.884 52.381 0.00 0.00 0.00 2.59
4941 5851 2.706190 GGCCCATACACAAGAGGAGTAT 59.294 50.000 0.00 0.00 0.00 2.12
4942 5852 3.244249 GGCCCATACACAAGAGGAGTATC 60.244 52.174 0.00 0.00 0.00 2.24
4943 5853 3.643792 GCCCATACACAAGAGGAGTATCT 59.356 47.826 0.00 0.00 33.73 1.98
4944 5854 4.833380 GCCCATACACAAGAGGAGTATCTA 59.167 45.833 0.00 0.00 33.73 1.98
4945 5855 5.279056 GCCCATACACAAGAGGAGTATCTAC 60.279 48.000 0.00 0.00 33.73 2.59
4946 5856 5.833667 CCCATACACAAGAGGAGTATCTACA 59.166 44.000 0.00 0.00 33.73 2.74
4947 5857 6.495181 CCCATACACAAGAGGAGTATCTACAT 59.505 42.308 0.00 0.00 33.73 2.29
4948 5858 7.374272 CCATACACAAGAGGAGTATCTACATG 58.626 42.308 0.00 0.00 33.73 3.21
4949 5859 5.269505 ACACAAGAGGAGTATCTACATGC 57.730 43.478 0.00 0.00 33.73 4.06
4950 5860 4.711846 ACACAAGAGGAGTATCTACATGCA 59.288 41.667 0.00 0.00 33.73 3.96
4951 5861 5.365025 ACACAAGAGGAGTATCTACATGCAT 59.635 40.000 0.00 0.00 33.73 3.96
4952 5862 6.551227 ACACAAGAGGAGTATCTACATGCATA 59.449 38.462 0.00 0.00 33.73 3.14
4953 5863 7.089538 CACAAGAGGAGTATCTACATGCATAG 58.910 42.308 0.00 0.00 33.73 2.23
4954 5864 6.210385 ACAAGAGGAGTATCTACATGCATAGG 59.790 42.308 0.00 0.00 33.73 2.57
4955 5865 5.268387 AGAGGAGTATCTACATGCATAGGG 58.732 45.833 0.00 0.00 33.73 3.53
4956 5866 5.017093 AGGAGTATCTACATGCATAGGGT 57.983 43.478 0.00 0.00 33.73 4.34
4957 5867 5.407049 AGGAGTATCTACATGCATAGGGTT 58.593 41.667 0.00 0.00 33.73 4.11
4958 5868 5.247110 AGGAGTATCTACATGCATAGGGTTG 59.753 44.000 0.00 0.00 33.73 3.77
4959 5869 5.482908 GAGTATCTACATGCATAGGGTTGG 58.517 45.833 0.00 0.00 0.00 3.77
4960 5870 5.155161 AGTATCTACATGCATAGGGTTGGA 58.845 41.667 0.00 0.00 0.00 3.53
4961 5871 5.787494 AGTATCTACATGCATAGGGTTGGAT 59.213 40.000 0.00 4.36 0.00 3.41
4963 5873 2.369983 ACATGCATAGGGTTGGATGG 57.630 50.000 0.00 0.00 46.27 3.51
4964 5874 1.133388 ACATGCATAGGGTTGGATGGG 60.133 52.381 0.00 0.00 46.27 4.00
4965 5875 0.178953 ATGCATAGGGTTGGATGGGC 60.179 55.000 0.00 0.00 0.00 5.36
4966 5876 1.288508 TGCATAGGGTTGGATGGGCT 61.289 55.000 0.00 0.00 0.00 5.19
4967 5877 0.825010 GCATAGGGTTGGATGGGCTG 60.825 60.000 0.00 0.00 0.00 4.85
4968 5878 0.178981 CATAGGGTTGGATGGGCTGG 60.179 60.000 0.00 0.00 0.00 4.85
4969 5879 0.328450 ATAGGGTTGGATGGGCTGGA 60.328 55.000 0.00 0.00 0.00 3.86
4970 5880 0.328450 TAGGGTTGGATGGGCTGGAT 60.328 55.000 0.00 0.00 0.00 3.41
4971 5881 1.456331 GGGTTGGATGGGCTGGATG 60.456 63.158 0.00 0.00 0.00 3.51
4972 5882 1.614711 GGTTGGATGGGCTGGATGA 59.385 57.895 0.00 0.00 0.00 2.92
4973 5883 0.033208 GGTTGGATGGGCTGGATGAA 60.033 55.000 0.00 0.00 0.00 2.57
4974 5884 1.619432 GGTTGGATGGGCTGGATGAAA 60.619 52.381 0.00 0.00 0.00 2.69
4975 5885 2.178580 GTTGGATGGGCTGGATGAAAA 58.821 47.619 0.00 0.00 0.00 2.29
4976 5886 1.851304 TGGATGGGCTGGATGAAAAC 58.149 50.000 0.00 0.00 0.00 2.43
4977 5887 0.740737 GGATGGGCTGGATGAAAACG 59.259 55.000 0.00 0.00 0.00 3.60
4978 5888 1.463674 GATGGGCTGGATGAAAACGT 58.536 50.000 0.00 0.00 0.00 3.99
4979 5889 1.133025 GATGGGCTGGATGAAAACGTG 59.867 52.381 0.00 0.00 0.00 4.49
4980 5890 0.109532 TGGGCTGGATGAAAACGTGA 59.890 50.000 0.00 0.00 0.00 4.35
4981 5891 0.804989 GGGCTGGATGAAAACGTGAG 59.195 55.000 0.00 0.00 0.00 3.51
5069 5979 8.477984 AAATGCCATGAACATATTTGTAACAC 57.522 30.769 0.00 0.00 34.06 3.32
5070 5980 6.832520 TGCCATGAACATATTTGTAACACT 57.167 33.333 0.00 0.00 34.06 3.55
5071 5981 6.851609 TGCCATGAACATATTTGTAACACTC 58.148 36.000 0.00 0.00 34.06 3.51
5072 5982 5.965334 GCCATGAACATATTTGTAACACTCG 59.035 40.000 0.00 0.00 34.06 4.18
5073 5983 6.403200 GCCATGAACATATTTGTAACACTCGT 60.403 38.462 0.00 0.00 34.06 4.18
5074 5984 6.960992 CCATGAACATATTTGTAACACTCGTG 59.039 38.462 0.00 0.00 34.06 4.35
5075 5985 7.148490 CCATGAACATATTTGTAACACTCGTGA 60.148 37.037 3.74 0.00 34.06 4.35
5076 5986 7.716768 TGAACATATTTGTAACACTCGTGAA 57.283 32.000 3.74 0.00 34.06 3.18
5077 5987 7.569297 TGAACATATTTGTAACACTCGTGAAC 58.431 34.615 3.74 2.71 34.06 3.18
5078 5988 7.224949 TGAACATATTTGTAACACTCGTGAACA 59.775 33.333 3.74 5.18 34.06 3.18
5079 5989 7.667043 ACATATTTGTAACACTCGTGAACAT 57.333 32.000 3.74 0.00 33.16 2.71
5080 5990 7.739295 ACATATTTGTAACACTCGTGAACATC 58.261 34.615 3.74 0.00 33.16 3.06
5081 5991 7.602644 ACATATTTGTAACACTCGTGAACATCT 59.397 33.333 3.74 2.18 33.16 2.90
5082 5992 6.861065 ATTTGTAACACTCGTGAACATCTT 57.139 33.333 3.74 0.00 32.99 2.40
5083 5993 6.671614 TTTGTAACACTCGTGAACATCTTT 57.328 33.333 3.74 0.00 32.99 2.52
5084 5994 6.671614 TTGTAACACTCGTGAACATCTTTT 57.328 33.333 3.74 0.00 32.99 2.27
5085 5995 6.671614 TGTAACACTCGTGAACATCTTTTT 57.328 33.333 3.74 0.00 0.00 1.94
5086 5996 7.773864 TGTAACACTCGTGAACATCTTTTTA 57.226 32.000 3.74 0.00 0.00 1.52
5087 5997 8.199176 TGTAACACTCGTGAACATCTTTTTAA 57.801 30.769 3.74 0.00 0.00 1.52
5088 5998 8.832521 TGTAACACTCGTGAACATCTTTTTAAT 58.167 29.630 3.74 0.00 0.00 1.40
5089 5999 9.659830 GTAACACTCGTGAACATCTTTTTAATT 57.340 29.630 3.74 0.00 0.00 1.40
5090 6000 8.560576 AACACTCGTGAACATCTTTTTAATTG 57.439 30.769 3.74 0.00 0.00 2.32
5091 6001 6.636850 ACACTCGTGAACATCTTTTTAATTGC 59.363 34.615 3.74 0.00 0.00 3.56
5092 6002 6.636447 CACTCGTGAACATCTTTTTAATTGCA 59.364 34.615 0.00 0.00 0.00 4.08
5093 6003 7.167302 CACTCGTGAACATCTTTTTAATTGCAA 59.833 33.333 0.00 0.00 0.00 4.08
5094 6004 7.167468 ACTCGTGAACATCTTTTTAATTGCAAC 59.833 33.333 0.00 0.00 0.00 4.17
5095 6005 6.141527 TCGTGAACATCTTTTTAATTGCAACG 59.858 34.615 0.00 0.00 0.00 4.10
5096 6006 6.075099 CGTGAACATCTTTTTAATTGCAACGT 60.075 34.615 0.00 0.00 0.00 3.99
5097 6007 7.112287 CGTGAACATCTTTTTAATTGCAACGTA 59.888 33.333 0.00 0.00 0.00 3.57
5098 6008 8.205297 GTGAACATCTTTTTAATTGCAACGTAC 58.795 33.333 0.00 0.00 0.00 3.67
5099 6009 7.915923 TGAACATCTTTTTAATTGCAACGTACA 59.084 29.630 0.00 0.00 0.00 2.90
5100 6010 7.617533 ACATCTTTTTAATTGCAACGTACAC 57.382 32.000 0.00 0.00 0.00 2.90
5101 6011 7.422399 ACATCTTTTTAATTGCAACGTACACT 58.578 30.769 0.00 0.00 0.00 3.55
5102 6012 7.918562 ACATCTTTTTAATTGCAACGTACACTT 59.081 29.630 0.00 0.00 0.00 3.16
5103 6013 8.751335 CATCTTTTTAATTGCAACGTACACTTT 58.249 29.630 0.00 0.00 0.00 2.66
5104 6014 8.690680 TCTTTTTAATTGCAACGTACACTTTT 57.309 26.923 0.00 0.00 0.00 2.27
5105 6015 9.141400 TCTTTTTAATTGCAACGTACACTTTTT 57.859 25.926 0.00 0.00 0.00 1.94
5140 6050 9.757227 ATGAAATGTTTCTTAAAAATTGGACGA 57.243 25.926 6.99 0.00 38.02 4.20
5141 6051 9.757227 TGAAATGTTTCTTAAAAATTGGACGAT 57.243 25.926 6.99 0.00 38.02 3.73
5145 6055 8.934507 TGTTTCTTAAAAATTGGACGATTTGT 57.065 26.923 0.00 0.00 30.06 2.83
5146 6056 9.372369 TGTTTCTTAAAAATTGGACGATTTGTT 57.628 25.926 0.00 0.17 30.06 2.83
5154 6064 9.928236 AAAAATTGGACGATTTGTTTTACATTG 57.072 25.926 0.00 0.00 30.06 2.82
5155 6065 8.655651 AAATTGGACGATTTGTTTTACATTGT 57.344 26.923 0.00 0.00 0.00 2.71
5156 6066 9.751542 AAATTGGACGATTTGTTTTACATTGTA 57.248 25.926 0.00 0.00 0.00 2.41
5157 6067 9.921637 AATTGGACGATTTGTTTTACATTGTAT 57.078 25.926 0.00 0.00 0.00 2.29
5199 6109 9.737427 TGTCAATTACATTTTATTGAAACACGT 57.263 25.926 0.00 0.00 41.10 4.49
5200 6110 9.987901 GTCAATTACATTTTATTGAAACACGTG 57.012 29.630 15.48 15.48 41.10 4.49
5201 6111 9.952188 TCAATTACATTTTATTGAAACACGTGA 57.048 25.926 25.01 0.00 37.71 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 0.684479 AGTCTGCATCGGAGTAGGCA 60.684 55.000 0.00 0.00 34.66 4.75
156 157 1.177401 CACGAGATGAGTGAGGGTCA 58.823 55.000 0.00 0.00 41.83 4.02
215 216 1.655654 CGCACGATACTCAGCCTCG 60.656 63.158 0.00 0.00 38.34 4.63
447 448 3.576550 GCAAATTGTTGGGAAGTAGGGAA 59.423 43.478 0.00 0.00 35.10 3.97
498 499 1.359848 CGGAACTCCTCAAATGACGG 58.640 55.000 0.00 0.00 0.00 4.79
592 596 1.823899 GAAGGCGGGCCCAATACAG 60.824 63.158 24.92 4.93 36.58 2.74
609 613 6.088541 ACCTCAACTATACAAGGGACTAGA 57.911 41.667 0.00 0.00 38.49 2.43
615 619 2.764572 ACGGACCTCAACTATACAAGGG 59.235 50.000 0.00 0.00 32.97 3.95
712 716 0.251354 GGAGAGCTGCTGTGATTCCA 59.749 55.000 7.01 0.00 0.00 3.53
714 718 1.654317 CAGGAGAGCTGCTGTGATTC 58.346 55.000 7.01 0.00 42.98 2.52
715 719 3.857217 CAGGAGAGCTGCTGTGATT 57.143 52.632 7.01 0.00 42.98 2.57
725 729 2.175878 TTGAAAGACAGCAGGAGAGC 57.824 50.000 0.00 0.00 0.00 4.09
757 761 0.465460 TGGCACGCCAGAGTTTTTCT 60.465 50.000 6.67 0.00 41.89 2.52
758 762 2.029743 TGGCACGCCAGAGTTTTTC 58.970 52.632 6.67 0.00 41.89 2.29
759 763 4.251246 TGGCACGCCAGAGTTTTT 57.749 50.000 6.67 0.00 41.89 1.94
767 771 2.340210 AATATGTATGTGGCACGCCA 57.660 45.000 13.77 6.67 45.02 5.69
768 772 2.349438 CGAAATATGTATGTGGCACGCC 60.349 50.000 13.77 0.00 38.60 5.68
769 773 2.286833 ACGAAATATGTATGTGGCACGC 59.713 45.455 13.77 6.44 40.62 5.34
770 774 4.530094 AACGAAATATGTATGTGGCACG 57.470 40.909 13.77 0.00 0.00 5.34
771 775 8.676454 TTTTAAACGAAATATGTATGTGGCAC 57.324 30.769 11.55 11.55 0.00 5.01
772 776 9.862371 ATTTTTAAACGAAATATGTATGTGGCA 57.138 25.926 0.00 0.00 0.00 4.92
780 784 8.499967 GGCAACCAATTTTTAAACGAAATATGT 58.500 29.630 0.00 0.00 0.00 2.29
781 785 8.716909 AGGCAACCAATTTTTAAACGAAATATG 58.283 29.630 0.00 0.00 37.17 1.78
782 786 8.840833 AGGCAACCAATTTTTAAACGAAATAT 57.159 26.923 0.00 0.00 37.17 1.28
783 787 8.145122 AGAGGCAACCAATTTTTAAACGAAATA 58.855 29.630 0.00 0.00 37.17 1.40
784 788 6.989759 AGAGGCAACCAATTTTTAAACGAAAT 59.010 30.769 0.00 0.00 37.17 2.17
1072 1079 2.343758 GAGGCAGGCGACAAGACA 59.656 61.111 0.00 0.00 0.00 3.41
1287 1298 2.787473 TCCTGCACATGGAACTAAGG 57.213 50.000 0.00 0.00 0.00 2.69
1297 1308 2.173519 CCACCAAAGATTCCTGCACAT 58.826 47.619 0.00 0.00 0.00 3.21
1420 1431 0.749454 CAGTAGCACCCTGGAATGCC 60.749 60.000 16.39 5.51 43.12 4.40
1766 1939 9.566432 AAAGAACTGAGACAGAATGATTAACTT 57.434 29.630 5.76 0.00 39.69 2.66
1818 1991 8.204836 GCTTTCTGAGGTTAATTGGTCTATAGA 58.795 37.037 0.00 0.00 0.00 1.98
1819 1992 7.987458 TGCTTTCTGAGGTTAATTGGTCTATAG 59.013 37.037 0.00 0.00 0.00 1.31
1857 2030 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
1860 2033 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1861 2034 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1862 2035 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1863 2036 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
1891 2064 9.009327 CGTATGTTGTATTCCATTTGAAATGTC 57.991 33.333 15.93 3.21 36.33 3.06
1892 2065 7.973388 CCGTATGTTGTATTCCATTTGAAATGT 59.027 33.333 15.93 1.43 36.33 2.71
1893 2066 8.187480 TCCGTATGTTGTATTCCATTTGAAATG 58.813 33.333 10.84 10.84 36.33 2.32
1894 2067 8.287439 TCCGTATGTTGTATTCCATTTGAAAT 57.713 30.769 0.00 0.00 36.33 2.17
1895 2068 7.689446 TCCGTATGTTGTATTCCATTTGAAA 57.311 32.000 0.00 0.00 36.33 2.69
1896 2069 7.338196 ACATCCGTATGTTGTATTCCATTTGAA 59.662 33.333 0.00 0.00 44.07 2.69
1897 2070 6.826231 ACATCCGTATGTTGTATTCCATTTGA 59.174 34.615 0.00 0.00 44.07 2.69
1898 2071 7.026631 ACATCCGTATGTTGTATTCCATTTG 57.973 36.000 0.00 0.00 44.07 2.32
1899 2072 8.783093 CATACATCCGTATGTTGTATTCCATTT 58.217 33.333 0.00 0.00 46.70 2.32
1900 2073 8.322906 CATACATCCGTATGTTGTATTCCATT 57.677 34.615 0.00 0.00 46.70 3.16
1901 2074 7.905604 CATACATCCGTATGTTGTATTCCAT 57.094 36.000 0.00 0.00 46.70 3.41
1935 2108 8.677300 GCAAAATGGATGAATCTACACTCTAAA 58.323 33.333 0.00 0.00 0.00 1.85
1936 2109 8.049117 AGCAAAATGGATGAATCTACACTCTAA 58.951 33.333 0.00 0.00 0.00 2.10
1937 2110 7.568349 AGCAAAATGGATGAATCTACACTCTA 58.432 34.615 0.00 0.00 0.00 2.43
1938 2111 6.421485 AGCAAAATGGATGAATCTACACTCT 58.579 36.000 0.00 0.00 0.00 3.24
1939 2112 6.690194 AGCAAAATGGATGAATCTACACTC 57.310 37.500 0.00 0.00 0.00 3.51
1940 2113 6.183360 CGAAGCAAAATGGATGAATCTACACT 60.183 38.462 0.00 0.00 0.00 3.55
1941 2114 5.967674 CGAAGCAAAATGGATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
1942 2115 5.647658 ACGAAGCAAAATGGATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
1943 2116 6.124088 ACGAAGCAAAATGGATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
1944 2117 7.498900 ACATACGAAGCAAAATGGATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
1945 2118 6.319658 ACATACGAAGCAAAATGGATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
1946 2119 6.498304 ACATACGAAGCAAAATGGATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
1947 2120 6.455360 ACATACGAAGCAAAATGGATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
1948 2121 5.895636 ACATACGAAGCAAAATGGATGAA 57.104 34.783 0.00 0.00 0.00 2.57
1949 2122 6.112734 ACTACATACGAAGCAAAATGGATGA 58.887 36.000 0.00 0.00 0.00 2.92
1950 2123 6.037062 TGACTACATACGAAGCAAAATGGATG 59.963 38.462 0.00 0.00 0.00 3.51
1951 2124 6.037172 GTGACTACATACGAAGCAAAATGGAT 59.963 38.462 0.00 0.00 0.00 3.41
1952 2125 5.350365 GTGACTACATACGAAGCAAAATGGA 59.650 40.000 0.00 0.00 0.00 3.41
1953 2126 5.351465 AGTGACTACATACGAAGCAAAATGG 59.649 40.000 0.00 0.00 0.00 3.16
1954 2127 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
1955 2128 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
1956 2129 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
1957 2130 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
1958 2131 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
1959 2132 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
1960 2133 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
1961 2134 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
1962 2135 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
1963 2136 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
1964 2137 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
1965 2138 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
1967 2140 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
1968 2141 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
1969 2142 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
1970 2143 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
1971 2144 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
1972 2145 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
1973 2146 8.424918 AGTCTTTCTAGAGATTTCAACAAGTGA 58.575 33.333 0.00 0.00 0.00 3.41
1974 2147 8.600449 AGTCTTTCTAGAGATTTCAACAAGTG 57.400 34.615 0.00 0.00 0.00 3.16
1991 2164 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
1992 2165 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
1993 2166 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1994 2167 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1995 2168 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1996 2169 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1997 2170 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1998 2171 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1999 2172 6.723052 CCTACTCCCTCCGTTCCTAAATATAA 59.277 42.308 0.00 0.00 0.00 0.98
2000 2173 6.045931 TCCTACTCCCTCCGTTCCTAAATATA 59.954 42.308 0.00 0.00 0.00 0.86
2001 2174 5.085219 CCTACTCCCTCCGTTCCTAAATAT 58.915 45.833 0.00 0.00 0.00 1.28
2002 2175 4.168675 TCCTACTCCCTCCGTTCCTAAATA 59.831 45.833 0.00 0.00 0.00 1.40
2003 2176 3.052338 TCCTACTCCCTCCGTTCCTAAAT 60.052 47.826 0.00 0.00 0.00 1.40
2004 2177 2.312741 TCCTACTCCCTCCGTTCCTAAA 59.687 50.000 0.00 0.00 0.00 1.85
2005 2178 1.925255 TCCTACTCCCTCCGTTCCTAA 59.075 52.381 0.00 0.00 0.00 2.69
2006 2179 1.213926 GTCCTACTCCCTCCGTTCCTA 59.786 57.143 0.00 0.00 0.00 2.94
2007 2180 0.033306 GTCCTACTCCCTCCGTTCCT 60.033 60.000 0.00 0.00 0.00 3.36
2008 2181 0.033306 AGTCCTACTCCCTCCGTTCC 60.033 60.000 0.00 0.00 0.00 3.62
2009 2182 1.104630 CAGTCCTACTCCCTCCGTTC 58.895 60.000 0.00 0.00 0.00 3.95
2010 2183 0.408700 ACAGTCCTACTCCCTCCGTT 59.591 55.000 0.00 0.00 0.00 4.44
2011 2184 1.293062 TACAGTCCTACTCCCTCCGT 58.707 55.000 0.00 0.00 0.00 4.69
2012 2185 2.660670 ATACAGTCCTACTCCCTCCG 57.339 55.000 0.00 0.00 0.00 4.63
2013 2186 4.801164 TGTTATACAGTCCTACTCCCTCC 58.199 47.826 0.00 0.00 0.00 4.30
2014 2187 5.279056 GCATGTTATACAGTCCTACTCCCTC 60.279 48.000 0.00 0.00 0.00 4.30
2015 2188 4.589374 GCATGTTATACAGTCCTACTCCCT 59.411 45.833 0.00 0.00 0.00 4.20
2016 2189 4.344102 TGCATGTTATACAGTCCTACTCCC 59.656 45.833 0.00 0.00 0.00 4.30
2017 2190 5.069251 AGTGCATGTTATACAGTCCTACTCC 59.931 44.000 0.00 0.00 0.00 3.85
2018 2191 5.980116 CAGTGCATGTTATACAGTCCTACTC 59.020 44.000 0.00 0.00 0.00 2.59
2019 2192 5.682471 GCAGTGCATGTTATACAGTCCTACT 60.682 44.000 11.09 0.00 0.00 2.57
2020 2193 4.508124 GCAGTGCATGTTATACAGTCCTAC 59.492 45.833 11.09 0.00 0.00 3.18
2021 2194 4.161377 TGCAGTGCATGTTATACAGTCCTA 59.839 41.667 15.37 0.00 31.71 2.94
2022 2195 3.055167 TGCAGTGCATGTTATACAGTCCT 60.055 43.478 15.37 0.00 31.71 3.85
2058 2231 3.665745 ACATGTTCAAGGTTTCATGGC 57.334 42.857 0.00 0.00 41.01 4.40
2089 2262 2.032030 CACCTTTCATCACACAACGTCC 60.032 50.000 0.00 0.00 0.00 4.79
2143 2316 5.594317 AGAATCACTAACAACTTGCAAACCT 59.406 36.000 0.00 0.00 0.00 3.50
2146 2319 5.221224 CCCAGAATCACTAACAACTTGCAAA 60.221 40.000 0.00 0.00 0.00 3.68
2153 2326 5.105756 CCAAATCCCCAGAATCACTAACAAC 60.106 44.000 0.00 0.00 0.00 3.32
2162 2335 1.211949 TCGTCCCAAATCCCCAGAATC 59.788 52.381 0.00 0.00 0.00 2.52
2165 2338 0.546122 CATCGTCCCAAATCCCCAGA 59.454 55.000 0.00 0.00 0.00 3.86
2173 2346 3.270027 CTGCTGTATTCATCGTCCCAAA 58.730 45.455 0.00 0.00 0.00 3.28
2174 2347 2.236146 ACTGCTGTATTCATCGTCCCAA 59.764 45.455 0.00 0.00 0.00 4.12
2343 2516 8.661352 TTATTTCATCAAATGATAGTCGAGCA 57.339 30.769 0.00 0.00 39.39 4.26
2412 2585 8.519799 CTCTCTCATAGAGTAAGAAAAGGAGT 57.480 38.462 3.98 0.00 45.85 3.85
2470 2644 5.148651 ACCTGTAACCACACAAGAGTATC 57.851 43.478 0.00 0.00 0.00 2.24
2548 2722 5.805994 GCTAATAAACTAGTCTGCGACTTGT 59.194 40.000 14.71 15.18 46.73 3.16
2554 2728 6.505272 ACTTAGGCTAATAAACTAGTCTGCG 58.495 40.000 7.54 0.00 34.71 5.18
2557 2731 9.127277 CTCAGACTTAGGCTAATAAACTAGTCT 57.873 37.037 14.16 14.16 37.59 3.24
2582 2769 4.163839 AGCAAATTGGATCTGAGTAGAGCT 59.836 41.667 0.00 0.00 39.29 4.09
2705 3126 5.774690 TCCACTTGTTGGCTTCAAATAATCT 59.225 36.000 0.00 0.00 46.47 2.40
2722 3143 6.491062 TGCATCAATTATAATCCCTCCACTTG 59.509 38.462 0.00 0.00 0.00 3.16
2879 3300 6.037786 CAGGAGAACTGTAAACCATACTCA 57.962 41.667 0.00 0.00 42.42 3.41
2940 3361 4.807834 CAGCTCAGATCATTAATCGTGTGT 59.192 41.667 0.00 0.00 39.55 3.72
3057 3479 1.262683 GCTCTCACCAATGCTAATCGC 59.737 52.381 0.00 0.00 39.77 4.58
3065 3487 6.046290 TGGATATATCAGCTCTCACCAATG 57.954 41.667 14.60 0.00 0.00 2.82
3249 3671 0.106769 TGAGGCACAAAAGCAGGTCA 60.107 50.000 0.00 0.00 35.83 4.02
3250 3672 0.595095 CTGAGGCACAAAAGCAGGTC 59.405 55.000 0.00 0.00 35.83 3.85
3253 3675 1.406539 ACAACTGAGGCACAAAAGCAG 59.593 47.619 0.00 0.00 35.83 4.24
3334 3756 9.524106 AGCATATGTTCATGTGTATTTTGATTG 57.476 29.630 4.29 0.00 0.00 2.67
3366 3788 5.718649 TGATCTTTATAACTGAAGCACGC 57.281 39.130 0.00 0.00 0.00 5.34
3396 3818 3.569701 TCGTGATCATAGTGCTATGCTCA 59.430 43.478 16.93 16.93 42.74 4.26
3398 3820 4.492611 CATCGTGATCATAGTGCTATGCT 58.507 43.478 12.91 5.04 41.92 3.79
3453 3875 4.000988 TCTTGCTTCTTGTATCGTTTCCC 58.999 43.478 0.00 0.00 0.00 3.97
3454 3876 5.563842 CATCTTGCTTCTTGTATCGTTTCC 58.436 41.667 0.00 0.00 0.00 3.13
3456 3878 4.455533 TGCATCTTGCTTCTTGTATCGTTT 59.544 37.500 0.75 0.00 45.31 3.60
3457 3879 4.002982 TGCATCTTGCTTCTTGTATCGTT 58.997 39.130 0.75 0.00 45.31 3.85
3459 3881 4.330894 TCTTGCATCTTGCTTCTTGTATCG 59.669 41.667 0.75 0.00 45.31 2.92
3460 3882 5.808042 TCTTGCATCTTGCTTCTTGTATC 57.192 39.130 0.75 0.00 45.31 2.24
3461 3883 6.579666 TTTCTTGCATCTTGCTTCTTGTAT 57.420 33.333 0.75 0.00 45.31 2.29
3462 3884 6.349611 GGATTTCTTGCATCTTGCTTCTTGTA 60.350 38.462 0.75 0.00 45.31 2.41
3464 3886 4.863131 GGATTTCTTGCATCTTGCTTCTTG 59.137 41.667 0.75 0.00 45.31 3.02
3487 3915 6.805713 TCTTTTCCAGAAAGCACCTTAAAAG 58.194 36.000 0.00 0.00 0.00 2.27
3492 3920 7.544804 AATATTCTTTTCCAGAAAGCACCTT 57.455 32.000 0.00 0.00 45.06 3.50
3511 3939 7.651027 AGTTCATGAGGCAAAGCTTAATATT 57.349 32.000 0.00 0.00 0.00 1.28
3541 3969 9.581099 TTTTTAGGAAAGTGAAACATTGTTCTC 57.419 29.630 1.83 4.06 41.43 2.87
3585 4013 9.953565 ACTTACTTAAATATACACAGAAAGGCA 57.046 29.630 0.00 0.00 0.00 4.75
3602 4030 7.038154 AGCTTGTTGATGCAAACTTACTTAA 57.962 32.000 0.00 0.00 0.00 1.85
3686 4123 5.578005 GGACTTTTATCCTTTTGGCCTAC 57.422 43.478 3.32 0.00 40.12 3.18
3718 4155 6.909550 TTCTGCAACCTACAAAAATACCAT 57.090 33.333 0.00 0.00 0.00 3.55
3722 4159 8.177119 ACTGATTTCTGCAACCTACAAAAATA 57.823 30.769 0.00 0.00 0.00 1.40
3769 4206 7.174253 TGCTATGAAAGTAGAACCGACAAAAAT 59.826 33.333 0.00 0.00 0.00 1.82
3813 4250 4.283467 CGTCCAATCCTCAGTAATGGGATA 59.717 45.833 11.84 0.00 38.73 2.59
3892 4329 8.682710 TGTGAAAATAATAAGCTGTAATGTCCC 58.317 33.333 0.00 0.00 0.00 4.46
3895 4332 9.855021 GGTTGTGAAAATAATAAGCTGTAATGT 57.145 29.630 0.00 0.00 0.00 2.71
3923 4360 8.553153 TCAATTCTAAATACCTACCATGGTTCA 58.447 33.333 25.38 4.66 41.22 3.18
3959 4396 4.469657 TGCCAATATGGAGGTATCAAACC 58.530 43.478 0.00 0.00 42.92 3.27
3966 4403 3.664320 TCCTTCTGCCAATATGGAGGTA 58.336 45.455 0.00 0.00 40.96 3.08
3980 4417 6.638610 TCTCTGAAGCTTAATCTTCCTTCTG 58.361 40.000 14.75 7.94 41.23 3.02
4007 4444 9.890629 AAGTGAATCTGTAAATAGCAGTATCAA 57.109 29.630 0.00 0.00 34.36 2.57
4043 4480 5.794894 AGAGATAAGTTTGTGACGGAACAT 58.205 37.500 4.81 0.00 0.00 2.71
4051 4488 9.342308 AGATTGTTCAAAGAGATAAGTTTGTGA 57.658 29.630 0.00 0.00 35.54 3.58
4054 4491 8.909671 GCAAGATTGTTCAAAGAGATAAGTTTG 58.090 33.333 0.00 0.00 35.38 2.93
4100 4537 6.372937 GCTCTGATAAGAAGGTATTATTGCCC 59.627 42.308 0.00 0.00 0.00 5.36
4148 4585 2.236489 AATTAACCAGCCCACATGCT 57.764 45.000 0.00 0.00 44.00 3.79
4234 4671 4.382040 CGATAATGTTCCAGGTGACTCTGT 60.382 45.833 0.00 0.00 40.21 3.41
4235 4672 4.115516 CGATAATGTTCCAGGTGACTCTG 58.884 47.826 0.00 0.00 40.21 3.35
4239 4676 2.627945 TGCGATAATGTTCCAGGTGAC 58.372 47.619 0.00 0.00 0.00 3.67
4247 4684 4.991056 TCAAGGAGCTATGCGATAATGTTC 59.009 41.667 0.00 0.00 0.00 3.18
4249 4686 4.607293 TCAAGGAGCTATGCGATAATGT 57.393 40.909 0.00 0.00 0.00 2.71
4257 4694 5.048224 ACAATGCATAATCAAGGAGCTATGC 60.048 40.000 0.00 6.84 44.45 3.14
4327 4764 5.890985 TGAGAGAGAGGGAAGATAAACTGAG 59.109 44.000 0.00 0.00 0.00 3.35
4350 4787 9.462174 TGCAACAAAAACTCTACATTTAGAATG 57.538 29.630 0.00 0.00 33.73 2.67
4362 4799 3.365472 AGGAACCTGCAACAAAAACTCT 58.635 40.909 0.00 0.00 0.00 3.24
4393 4831 2.486472 ATCAGTGCTGACAGAAAGGG 57.514 50.000 6.65 0.00 43.11 3.95
4611 5053 6.436027 TCTCCATTAAGACAGTCCTACATCT 58.564 40.000 0.00 0.00 0.00 2.90
4617 5059 5.308237 ACAAACTCTCCATTAAGACAGTCCT 59.692 40.000 0.00 0.00 0.00 3.85
4629 5071 1.701847 ACCTCAGCACAAACTCTCCAT 59.298 47.619 0.00 0.00 0.00 3.41
4694 5592 1.908299 GAGTGCCCAAACCAAGGGG 60.908 63.158 0.00 0.00 46.86 4.79
4696 5594 0.404040 TAGGAGTGCCCAAACCAAGG 59.596 55.000 0.00 0.00 37.41 3.61
4697 5595 2.286365 TTAGGAGTGCCCAAACCAAG 57.714 50.000 0.00 0.00 37.41 3.61
4698 5596 2.757894 TTTAGGAGTGCCCAAACCAA 57.242 45.000 0.00 0.00 37.41 3.67
4699 5597 2.757894 TTTTAGGAGTGCCCAAACCA 57.242 45.000 0.00 0.00 37.41 3.67
4700 5598 5.932619 AATATTTTAGGAGTGCCCAAACC 57.067 39.130 0.00 0.00 37.41 3.27
4701 5599 6.697395 ACAAATATTTTAGGAGTGCCCAAAC 58.303 36.000 0.00 0.00 37.41 2.93
4702 5600 6.926630 ACAAATATTTTAGGAGTGCCCAAA 57.073 33.333 0.00 0.00 37.41 3.28
4703 5601 7.338449 GTCTACAAATATTTTAGGAGTGCCCAA 59.662 37.037 0.00 0.00 37.41 4.12
4704 5602 6.826741 GTCTACAAATATTTTAGGAGTGCCCA 59.173 38.462 0.00 0.00 37.41 5.36
4705 5603 7.054751 AGTCTACAAATATTTTAGGAGTGCCC 58.945 38.462 0.00 0.00 33.31 5.36
4706 5604 7.769044 TGAGTCTACAAATATTTTAGGAGTGCC 59.231 37.037 0.00 0.00 0.00 5.01
4707 5605 8.718102 TGAGTCTACAAATATTTTAGGAGTGC 57.282 34.615 0.00 0.00 0.00 4.40
4748 5646 2.952245 ACGGTCCAGTCGTCTTCG 59.048 61.111 0.00 0.00 35.87 3.79
4796 5706 9.743057 CACATTGATAACTACCTGAAAAACAAA 57.257 29.630 0.00 0.00 0.00 2.83
4797 5707 7.865385 GCACATTGATAACTACCTGAAAAACAA 59.135 33.333 0.00 0.00 0.00 2.83
4798 5708 7.230510 AGCACATTGATAACTACCTGAAAAACA 59.769 33.333 0.00 0.00 0.00 2.83
4799 5709 7.593825 AGCACATTGATAACTACCTGAAAAAC 58.406 34.615 0.00 0.00 0.00 2.43
4804 5714 5.123820 GCAAAGCACATTGATAACTACCTGA 59.876 40.000 1.61 0.00 31.84 3.86
4806 5716 5.009631 TGCAAAGCACATTGATAACTACCT 58.990 37.500 1.61 0.00 31.71 3.08
4862 5772 2.979678 AGGACTTGGACAGTTACCACAT 59.020 45.455 0.00 0.00 35.01 3.21
4880 5790 2.463514 CCAGGGCCATGGCATAGGA 61.464 63.158 36.56 0.00 44.11 2.94
4886 5796 1.754234 CAAGTACCAGGGCCATGGC 60.754 63.158 35.75 29.47 44.80 4.40
4887 5797 0.331278 TTCAAGTACCAGGGCCATGG 59.669 55.000 34.35 34.35 46.47 3.66
4918 5828 1.139853 CTCCTCTTGTGTATGGGCCTC 59.860 57.143 4.53 0.00 0.00 4.70
4928 5838 5.268118 TGCATGTAGATACTCCTCTTGTG 57.732 43.478 0.00 0.00 0.00 3.33
4939 5849 5.045651 CCATCCAACCCTATGCATGTAGATA 60.046 44.000 10.16 0.00 0.00 1.98
4940 5850 4.263639 CCATCCAACCCTATGCATGTAGAT 60.264 45.833 10.16 2.77 0.00 1.98
4941 5851 3.072915 CCATCCAACCCTATGCATGTAGA 59.927 47.826 10.16 0.40 0.00 2.59
4942 5852 3.415212 CCATCCAACCCTATGCATGTAG 58.585 50.000 10.16 0.00 0.00 2.74
4943 5853 2.108075 CCCATCCAACCCTATGCATGTA 59.892 50.000 10.16 0.00 0.00 2.29
4944 5854 1.133388 CCCATCCAACCCTATGCATGT 60.133 52.381 10.16 0.00 0.00 3.21
4945 5855 1.624336 CCCATCCAACCCTATGCATG 58.376 55.000 10.16 0.00 0.00 4.06
4946 5856 0.178953 GCCCATCCAACCCTATGCAT 60.179 55.000 3.79 3.79 0.00 3.96
4947 5857 1.229927 GCCCATCCAACCCTATGCA 59.770 57.895 0.00 0.00 0.00 3.96
4948 5858 0.825010 CAGCCCATCCAACCCTATGC 60.825 60.000 0.00 0.00 0.00 3.14
4949 5859 0.178981 CCAGCCCATCCAACCCTATG 60.179 60.000 0.00 0.00 0.00 2.23
4950 5860 0.328450 TCCAGCCCATCCAACCCTAT 60.328 55.000 0.00 0.00 0.00 2.57
4951 5861 0.328450 ATCCAGCCCATCCAACCCTA 60.328 55.000 0.00 0.00 0.00 3.53
4952 5862 1.623686 ATCCAGCCCATCCAACCCT 60.624 57.895 0.00 0.00 0.00 4.34
4953 5863 1.456331 CATCCAGCCCATCCAACCC 60.456 63.158 0.00 0.00 0.00 4.11
4954 5864 0.033208 TTCATCCAGCCCATCCAACC 60.033 55.000 0.00 0.00 0.00 3.77
4955 5865 1.851304 TTTCATCCAGCCCATCCAAC 58.149 50.000 0.00 0.00 0.00 3.77
4956 5866 2.178580 GTTTTCATCCAGCCCATCCAA 58.821 47.619 0.00 0.00 0.00 3.53
4957 5867 1.851304 GTTTTCATCCAGCCCATCCA 58.149 50.000 0.00 0.00 0.00 3.41
4958 5868 0.740737 CGTTTTCATCCAGCCCATCC 59.259 55.000 0.00 0.00 0.00 3.51
4959 5869 1.133025 CACGTTTTCATCCAGCCCATC 59.867 52.381 0.00 0.00 0.00 3.51
4960 5870 1.176527 CACGTTTTCATCCAGCCCAT 58.823 50.000 0.00 0.00 0.00 4.00
4961 5871 0.109532 TCACGTTTTCATCCAGCCCA 59.890 50.000 0.00 0.00 0.00 5.36
4962 5872 0.804989 CTCACGTTTTCATCCAGCCC 59.195 55.000 0.00 0.00 0.00 5.19
4963 5873 1.523758 ACTCACGTTTTCATCCAGCC 58.476 50.000 0.00 0.00 0.00 4.85
4964 5874 4.946784 ATTACTCACGTTTTCATCCAGC 57.053 40.909 0.00 0.00 0.00 4.85
4965 5875 6.961359 TGTATTACTCACGTTTTCATCCAG 57.039 37.500 0.00 0.00 0.00 3.86
4966 5876 7.731882 TTTGTATTACTCACGTTTTCATCCA 57.268 32.000 0.00 0.00 0.00 3.41
5043 5953 9.579768 GTGTTACAAATATGTTCATGGCATTTA 57.420 29.630 0.00 0.00 41.05 1.40
5044 5954 8.313292 AGTGTTACAAATATGTTCATGGCATTT 58.687 29.630 0.00 0.25 41.05 2.32
5045 5955 7.839907 AGTGTTACAAATATGTTCATGGCATT 58.160 30.769 0.00 0.00 41.05 3.56
5046 5956 7.408756 AGTGTTACAAATATGTTCATGGCAT 57.591 32.000 0.00 0.00 41.05 4.40
5047 5957 6.403092 CGAGTGTTACAAATATGTTCATGGCA 60.403 38.462 0.00 0.00 41.05 4.92
5048 5958 5.965334 CGAGTGTTACAAATATGTTCATGGC 59.035 40.000 0.00 0.00 41.05 4.40
5049 5959 6.960992 CACGAGTGTTACAAATATGTTCATGG 59.039 38.462 0.00 0.00 41.05 3.66
5050 5960 7.738345 TCACGAGTGTTACAAATATGTTCATG 58.262 34.615 2.97 0.00 41.05 3.07
5051 5961 7.899178 TCACGAGTGTTACAAATATGTTCAT 57.101 32.000 2.97 0.00 41.05 2.57
5052 5962 7.224949 TGTTCACGAGTGTTACAAATATGTTCA 59.775 33.333 2.97 0.00 41.05 3.18
5053 5963 7.569297 TGTTCACGAGTGTTACAAATATGTTC 58.431 34.615 2.97 0.00 41.05 3.18
5054 5964 7.485418 TGTTCACGAGTGTTACAAATATGTT 57.515 32.000 2.97 0.00 41.05 2.71
5055 5965 7.602644 AGATGTTCACGAGTGTTACAAATATGT 59.397 33.333 14.13 0.00 43.74 2.29
5056 5966 7.963981 AGATGTTCACGAGTGTTACAAATATG 58.036 34.615 14.13 0.00 33.02 1.78
5057 5967 8.547967 AAGATGTTCACGAGTGTTACAAATAT 57.452 30.769 14.13 2.34 33.02 1.28
5058 5968 7.956420 AAGATGTTCACGAGTGTTACAAATA 57.044 32.000 14.13 0.00 33.02 1.40
5059 5969 6.861065 AAGATGTTCACGAGTGTTACAAAT 57.139 33.333 14.13 6.78 33.02 2.32
5060 5970 6.671614 AAAGATGTTCACGAGTGTTACAAA 57.328 33.333 14.13 0.00 33.02 2.83
5061 5971 6.671614 AAAAGATGTTCACGAGTGTTACAA 57.328 33.333 14.13 0.00 33.02 2.41
5062 5972 6.671614 AAAAAGATGTTCACGAGTGTTACA 57.328 33.333 13.09 13.09 33.48 2.41
5063 5973 9.659830 AATTAAAAAGATGTTCACGAGTGTTAC 57.340 29.630 2.97 4.17 0.00 2.50
5064 5974 9.658475 CAATTAAAAAGATGTTCACGAGTGTTA 57.342 29.630 2.97 0.00 0.00 2.41
5065 5975 7.167468 GCAATTAAAAAGATGTTCACGAGTGTT 59.833 33.333 2.97 0.00 0.00 3.32
5066 5976 6.636850 GCAATTAAAAAGATGTTCACGAGTGT 59.363 34.615 2.97 0.00 0.00 3.55
5067 5977 6.636447 TGCAATTAAAAAGATGTTCACGAGTG 59.364 34.615 0.00 0.00 0.00 3.51
5068 5978 6.734137 TGCAATTAAAAAGATGTTCACGAGT 58.266 32.000 0.00 0.00 0.00 4.18
5069 5979 7.493313 GTTGCAATTAAAAAGATGTTCACGAG 58.507 34.615 0.59 0.00 0.00 4.18
5070 5980 6.141527 CGTTGCAATTAAAAAGATGTTCACGA 59.858 34.615 0.59 0.00 0.00 4.35
5071 5981 6.075099 ACGTTGCAATTAAAAAGATGTTCACG 60.075 34.615 0.59 0.00 0.00 4.35
5072 5982 7.160633 ACGTTGCAATTAAAAAGATGTTCAC 57.839 32.000 0.59 0.00 0.00 3.18
5073 5983 7.915923 TGTACGTTGCAATTAAAAAGATGTTCA 59.084 29.630 0.59 0.00 0.00 3.18
5074 5984 8.205297 GTGTACGTTGCAATTAAAAAGATGTTC 58.795 33.333 0.59 0.00 0.00 3.18
5075 5985 7.918562 AGTGTACGTTGCAATTAAAAAGATGTT 59.081 29.630 0.59 0.00 0.00 2.71
5076 5986 7.422399 AGTGTACGTTGCAATTAAAAAGATGT 58.578 30.769 0.59 0.00 0.00 3.06
5077 5987 7.851822 AGTGTACGTTGCAATTAAAAAGATG 57.148 32.000 0.59 0.00 0.00 2.90
5078 5988 8.865590 AAAGTGTACGTTGCAATTAAAAAGAT 57.134 26.923 0.59 0.00 0.00 2.40
5079 5989 8.690680 AAAAGTGTACGTTGCAATTAAAAAGA 57.309 26.923 0.59 0.00 0.00 2.52
5114 6024 9.757227 TCGTCCAATTTTTAAGAAACATTTCAT 57.243 25.926 7.10 0.00 39.61 2.57
5115 6025 9.757227 ATCGTCCAATTTTTAAGAAACATTTCA 57.243 25.926 7.10 0.00 39.61 2.69
5119 6029 9.541143 ACAAATCGTCCAATTTTTAAGAAACAT 57.459 25.926 0.00 0.00 0.00 2.71
5120 6030 8.934507 ACAAATCGTCCAATTTTTAAGAAACA 57.065 26.923 0.00 0.00 0.00 2.83
5128 6038 9.928236 CAATGTAAAACAAATCGTCCAATTTTT 57.072 25.926 0.00 0.00 0.00 1.94
5129 6039 9.103861 ACAATGTAAAACAAATCGTCCAATTTT 57.896 25.926 0.00 0.00 0.00 1.82
5130 6040 8.655651 ACAATGTAAAACAAATCGTCCAATTT 57.344 26.923 0.00 0.00 0.00 1.82
5131 6041 9.921637 ATACAATGTAAAACAAATCGTCCAATT 57.078 25.926 0.00 0.00 0.00 2.32
5173 6083 9.737427 ACGTGTTTCAATAAAATGTAATTGACA 57.263 25.926 0.00 0.00 40.77 3.58
5174 6084 9.987901 CACGTGTTTCAATAAAATGTAATTGAC 57.012 29.630 7.58 0.00 40.77 3.18
5175 6085 9.952188 TCACGTGTTTCAATAAAATGTAATTGA 57.048 25.926 16.51 0.00 39.66 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.