Multiple sequence alignment - TraesCS6D01G243100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G243100 chr6D 100.000 5005 0 0 1 5005 345242648 345247652 0.000000e+00 9243.0
1 TraesCS6D01G243100 chr6B 97.906 2197 34 6 2493 4684 521034575 521036764 0.000000e+00 3792.0
2 TraesCS6D01G243100 chr6B 97.930 1546 31 1 949 2494 521032870 521034414 0.000000e+00 2676.0
3 TraesCS6D01G243100 chr6B 88.933 253 8 6 4724 4973 521036762 521036997 1.360000e-75 294.0
4 TraesCS6D01G243100 chr6A 92.970 2589 122 26 2050 4605 485699699 485702260 0.000000e+00 3718.0
5 TraesCS6D01G243100 chr6A 92.373 1416 74 8 884 2279 485697821 485699222 0.000000e+00 1986.0
6 TraesCS6D01G243100 chr4B 91.522 578 40 9 296 867 666793471 666794045 0.000000e+00 787.0
7 TraesCS6D01G243100 chr4B 93.269 104 7 0 196 299 666793406 666793509 2.410000e-33 154.0
8 TraesCS6D01G243100 chr4B 97.674 43 0 1 4681 4722 579410678 579410636 6.950000e-09 73.1
9 TraesCS6D01G243100 chr3B 90.783 575 45 8 296 864 742244447 742243875 0.000000e+00 761.0
10 TraesCS6D01G243100 chr3B 90.815 577 39 13 296 865 56351156 56350587 0.000000e+00 760.0
11 TraesCS6D01G243100 chr3B 90.734 572 39 13 296 860 526959626 526960190 0.000000e+00 750.0
12 TraesCS6D01G243100 chr3B 91.882 271 21 1 602 872 56356326 56356595 1.320000e-100 377.0
13 TraesCS6D01G243100 chr3B 92.045 264 21 0 602 865 526939813 526939550 6.120000e-99 372.0
14 TraesCS6D01G243100 chr3B 89.695 262 23 3 40 299 526959405 526959664 1.040000e-86 331.0
15 TraesCS6D01G243100 chr3B 88.561 271 27 3 40 308 56351377 56351109 4.830000e-85 326.0
16 TraesCS6D01G243100 chr3B 92.857 196 10 4 296 487 745535991 745536186 1.060000e-71 281.0
17 TraesCS6D01G243100 chr3B 89.617 183 15 3 125 305 742244583 742244403 3.900000e-56 230.0
18 TraesCS6D01G243100 chr3B 90.395 177 13 3 125 299 745535855 745536029 3.900000e-56 230.0
19 TraesCS6D01G243100 chr3B 98.214 56 1 0 1 56 742244622 742244567 1.150000e-16 99.0
20 TraesCS6D01G243100 chr3B 98.214 56 1 0 1 56 745535816 745535871 1.150000e-16 99.0
21 TraesCS6D01G243100 chr3B 97.674 43 1 0 1 43 56351378 56351336 1.930000e-09 75.0
22 TraesCS6D01G243100 chr3B 97.674 43 1 0 1 43 526959404 526959446 1.930000e-09 75.0
23 TraesCS6D01G243100 chr7B 90.609 575 46 8 296 864 42824204 42823632 0.000000e+00 756.0
24 TraesCS6D01G243100 chr7B 90.110 182 15 2 125 305 42824339 42824160 3.010000e-57 233.0
25 TraesCS6D01G243100 chr7B 98.214 56 1 0 1 56 42824378 42824323 1.150000e-16 99.0
26 TraesCS6D01G243100 chr7B 95.455 44 2 0 4692 4735 736631559 736631602 2.500000e-08 71.3
27 TraesCS6D01G243100 chr7A 90.087 575 45 11 296 864 42354477 42353909 0.000000e+00 736.0
28 TraesCS6D01G243100 chr7A 91.667 264 22 0 602 865 42357836 42358099 2.850000e-97 366.0
29 TraesCS6D01G243100 chr7A 88.930 271 26 3 40 308 42354698 42354430 1.040000e-86 331.0
30 TraesCS6D01G243100 chr7A 97.674 43 1 0 1 43 42354699 42354657 1.930000e-09 75.0
31 TraesCS6D01G243100 chr7A 89.286 56 2 4 4687 4740 287218225 287218278 3.230000e-07 67.6
32 TraesCS6D01G243100 chr1D 88.696 345 36 2 303 647 284052636 284052295 7.750000e-113 418.0
33 TraesCS6D01G243100 chr1D 95.745 47 2 0 4692 4738 471622599 471622553 5.370000e-10 76.8
34 TraesCS6D01G243100 chr1D 84.848 66 7 3 4692 4756 411756963 411757026 4.180000e-06 63.9
35 TraesCS6D01G243100 chr5A 91.667 60 4 1 4680 4738 611555858 611555917 1.150000e-11 82.4
36 TraesCS6D01G243100 chr4A 97.619 42 1 0 4681 4722 656741840 656741799 6.950000e-09 73.1
37 TraesCS6D01G243100 chr3A 93.878 49 0 2 4681 4729 682330859 682330904 2.500000e-08 71.3
38 TraesCS6D01G243100 chr2B 90.385 52 4 1 4687 4738 793130294 793130244 3.230000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G243100 chr6D 345242648 345247652 5004 False 9243.000000 9243 100.000000 1 5005 1 chr6D.!!$F1 5004
1 TraesCS6D01G243100 chr6B 521032870 521036997 4127 False 2254.000000 3792 94.923000 949 4973 3 chr6B.!!$F1 4024
2 TraesCS6D01G243100 chr6A 485697821 485702260 4439 False 2852.000000 3718 92.671500 884 4605 2 chr6A.!!$F1 3721
3 TraesCS6D01G243100 chr4B 666793406 666794045 639 False 470.500000 787 92.395500 196 867 2 chr4B.!!$F1 671
4 TraesCS6D01G243100 chr3B 56350587 56351378 791 True 387.000000 760 92.350000 1 865 3 chr3B.!!$R2 864
5 TraesCS6D01G243100 chr3B 526959404 526960190 786 False 385.333333 750 92.701000 1 860 3 chr3B.!!$F2 859
6 TraesCS6D01G243100 chr3B 742243875 742244622 747 True 363.333333 761 92.871333 1 864 3 chr3B.!!$R3 863
7 TraesCS6D01G243100 chr7B 42823632 42824378 746 True 362.666667 756 92.977667 1 864 3 chr7B.!!$R1 863
8 TraesCS6D01G243100 chr7A 42353909 42354699 790 True 380.666667 736 92.230333 1 864 3 chr7A.!!$R1 863

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
517 521 0.176910 CGCCTCCTCCTCTTTCCTTC 59.823 60.000 0.0 0.0 0.00 3.46 F
895 900 0.379669 CAAGGATGCAAGGATGACGC 59.620 55.000 0.0 0.0 0.00 5.19 F
1360 1368 1.456518 CTCCTCCTCCTCGCATCCA 60.457 63.158 0.0 0.0 0.00 3.41 F
1503 1511 2.653115 GGGCTGCTGTTGCTTTCC 59.347 61.111 0.0 0.0 40.48 3.13 F
2365 3118 2.790433 TGCCCTAATGTGAGTTTGTCC 58.210 47.619 0.0 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2264 3017 6.657836 ATACCTGTACTAAATTCACGTTGC 57.342 37.5 0.00 0.00 0.00 4.17 R
3109 4030 6.559810 TGCAATCCATAAGGTTCAAATAACG 58.440 36.0 0.00 0.00 35.89 3.18 R
3516 4439 0.990374 ATTGCTCAGAGGGCTCAAGT 59.010 50.0 0.00 0.00 0.00 3.16 R
3769 4693 7.312657 TGTTGTCTGATGCATCTAATTTCTC 57.687 36.0 26.32 11.07 0.00 2.87 R
4631 5558 0.538584 CTCATAGTGGGCTCTGCACA 59.461 55.0 0.00 0.00 40.85 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.338400 AGAAACATAGCCGGGCTTAATTTC 59.662 41.667 29.02 27.89 40.44 2.17
56 57 6.595716 GCATGACTAACAGAGAAACATAACCT 59.404 38.462 0.00 0.00 0.00 3.50
57 58 7.764443 GCATGACTAACAGAGAAACATAACCTA 59.236 37.037 0.00 0.00 0.00 3.08
58 59 9.653287 CATGACTAACAGAGAAACATAACCTAA 57.347 33.333 0.00 0.00 0.00 2.69
60 61 9.485206 TGACTAACAGAGAAACATAACCTAAAC 57.515 33.333 0.00 0.00 0.00 2.01
61 62 8.843885 ACTAACAGAGAAACATAACCTAAACC 57.156 34.615 0.00 0.00 0.00 3.27
62 63 8.657712 ACTAACAGAGAAACATAACCTAAACCT 58.342 33.333 0.00 0.00 0.00 3.50
63 64 9.503399 CTAACAGAGAAACATAACCTAAACCTT 57.497 33.333 0.00 0.00 0.00 3.50
65 66 9.856162 AACAGAGAAACATAACCTAAACCTTAA 57.144 29.630 0.00 0.00 0.00 1.85
72 73 9.923143 AAACATAACCTAAACCTTAATTTCTGC 57.077 29.630 0.00 0.00 0.00 4.26
73 74 8.644374 ACATAACCTAAACCTTAATTTCTGCA 57.356 30.769 0.00 0.00 0.00 4.41
74 75 9.255029 ACATAACCTAAACCTTAATTTCTGCAT 57.745 29.630 0.00 0.00 0.00 3.96
75 76 9.520204 CATAACCTAAACCTTAATTTCTGCATG 57.480 33.333 0.00 0.00 0.00 4.06
76 77 7.775053 AACCTAAACCTTAATTTCTGCATGA 57.225 32.000 0.00 0.00 0.00 3.07
77 78 7.961326 ACCTAAACCTTAATTTCTGCATGAT 57.039 32.000 0.00 0.00 0.00 2.45
78 79 8.366359 ACCTAAACCTTAATTTCTGCATGATT 57.634 30.769 0.00 0.00 0.00 2.57
79 80 9.474313 ACCTAAACCTTAATTTCTGCATGATTA 57.526 29.630 0.00 0.00 0.00 1.75
94 95 3.574284 TGATTAACATGTGCCAAGTGC 57.426 42.857 0.00 0.00 41.77 4.40
107 108 1.886542 CCAAGTGCTACCTTCAAACCC 59.113 52.381 0.00 0.00 0.00 4.11
115 116 4.262617 GCTACCTTCAAACCCTAGGAAAG 58.737 47.826 11.48 5.69 33.21 2.62
131 132 2.750166 GGAAAGAGGCCTAAAACAGAGC 59.250 50.000 4.42 0.00 0.00 4.09
135 136 1.279271 GAGGCCTAAAACAGAGCCAGA 59.721 52.381 4.42 0.00 40.93 3.86
180 182 6.506538 ACTTCCATAGCTATCAAGGAACAT 57.493 37.500 16.35 8.08 34.82 2.71
190 192 2.972625 TCAAGGAACATAACAGAGCCG 58.027 47.619 0.00 0.00 0.00 5.52
197 200 1.557832 ACATAACAGAGCCGGGCTTAA 59.442 47.619 24.71 7.54 39.88 1.85
200 203 1.489560 AACAGAGCCGGGCTTAACCT 61.490 55.000 24.71 12.73 39.88 3.50
211 214 2.168496 GGCTTAACCTCCTCAAAACCC 58.832 52.381 0.00 0.00 34.51 4.11
215 218 4.586884 CTTAACCTCCTCAAAACCCTACC 58.413 47.826 0.00 0.00 0.00 3.18
217 220 2.267192 ACCTCCTCAAAACCCTACCTC 58.733 52.381 0.00 0.00 0.00 3.85
291 294 0.393077 AACACGAGGAACAGGGACAG 59.607 55.000 0.00 0.00 0.00 3.51
299 302 2.304180 AGGAACAGGGACAGATGAACAG 59.696 50.000 0.00 0.00 0.00 3.16
300 303 2.616510 GGAACAGGGACAGATGAACAGG 60.617 54.545 0.00 0.00 0.00 4.00
301 304 0.987294 ACAGGGACAGATGAACAGGG 59.013 55.000 0.00 0.00 0.00 4.45
302 305 1.279496 CAGGGACAGATGAACAGGGA 58.721 55.000 0.00 0.00 0.00 4.20
303 306 1.065854 CAGGGACAGATGAACAGGGAC 60.066 57.143 0.00 0.00 0.00 4.46
304 307 0.984230 GGGACAGATGAACAGGGACA 59.016 55.000 0.00 0.00 0.00 4.02
315 318 0.321671 ACAGGGACATGAACACGAGG 59.678 55.000 0.00 0.00 0.00 4.63
316 319 0.608130 CAGGGACATGAACACGAGGA 59.392 55.000 0.00 0.00 0.00 3.71
317 320 1.001974 CAGGGACATGAACACGAGGAA 59.998 52.381 0.00 0.00 0.00 3.36
318 321 1.002087 AGGGACATGAACACGAGGAAC 59.998 52.381 0.00 0.00 0.00 3.62
319 322 1.270625 GGGACATGAACACGAGGAACA 60.271 52.381 0.00 0.00 0.00 3.18
320 323 2.069273 GGACATGAACACGAGGAACAG 58.931 52.381 0.00 0.00 0.00 3.16
321 324 2.069273 GACATGAACACGAGGAACAGG 58.931 52.381 0.00 0.00 0.00 4.00
322 325 1.270839 ACATGAACACGAGGAACAGGG 60.271 52.381 0.00 0.00 0.00 4.45
323 326 1.001974 CATGAACACGAGGAACAGGGA 59.998 52.381 0.00 0.00 0.00 4.20
324 327 0.391597 TGAACACGAGGAACAGGGAC 59.608 55.000 0.00 0.00 0.00 4.46
325 328 0.391597 GAACACGAGGAACAGGGACA 59.608 55.000 0.00 0.00 0.00 4.02
326 329 0.393077 AACACGAGGAACAGGGACAG 59.607 55.000 0.00 0.00 0.00 3.51
327 330 0.469331 ACACGAGGAACAGGGACAGA 60.469 55.000 0.00 0.00 0.00 3.41
328 331 0.898320 CACGAGGAACAGGGACAGAT 59.102 55.000 0.00 0.00 0.00 2.90
329 332 0.898320 ACGAGGAACAGGGACAGATG 59.102 55.000 0.00 0.00 0.00 2.90
330 333 1.186200 CGAGGAACAGGGACAGATGA 58.814 55.000 0.00 0.00 0.00 2.92
331 334 1.550524 CGAGGAACAGGGACAGATGAA 59.449 52.381 0.00 0.00 0.00 2.57
332 335 2.675317 CGAGGAACAGGGACAGATGAAC 60.675 54.545 0.00 0.00 0.00 3.18
333 336 2.303022 GAGGAACAGGGACAGATGAACA 59.697 50.000 0.00 0.00 0.00 3.18
334 337 2.304180 AGGAACAGGGACAGATGAACAG 59.696 50.000 0.00 0.00 0.00 3.16
335 338 2.616510 GGAACAGGGACAGATGAACAGG 60.617 54.545 0.00 0.00 0.00 4.00
336 339 0.987294 ACAGGGACAGATGAACAGGG 59.013 55.000 0.00 0.00 0.00 4.45
337 340 1.279496 CAGGGACAGATGAACAGGGA 58.721 55.000 0.00 0.00 0.00 4.20
338 341 1.065854 CAGGGACAGATGAACAGGGAC 60.066 57.143 0.00 0.00 0.00 4.46
339 342 0.984230 GGGACAGATGAACAGGGACA 59.016 55.000 0.00 0.00 0.00 4.02
340 343 1.561542 GGGACAGATGAACAGGGACAT 59.438 52.381 0.00 0.00 0.00 3.06
400 404 1.954362 GCTCTCCATCAGGTCGCAGT 61.954 60.000 0.00 0.00 35.89 4.40
475 479 2.740714 GGGTTGCGTGCGTCAGATC 61.741 63.158 0.00 0.00 0.00 2.75
476 480 2.027073 GGTTGCGTGCGTCAGATCA 61.027 57.895 0.00 0.00 0.00 2.92
517 521 0.176910 CGCCTCCTCCTCTTTCCTTC 59.823 60.000 0.00 0.00 0.00 3.46
523 527 1.208706 CTCCTCTTTCCTTCCCTCCC 58.791 60.000 0.00 0.00 0.00 4.30
545 549 5.280934 CCCTTCTCTTCTCTTTCCCTGAATT 60.281 44.000 0.00 0.00 0.00 2.17
555 559 4.827284 TCTTTCCCTGAATTGACTGGTTTC 59.173 41.667 0.00 0.00 0.00 2.78
562 566 0.517316 ATTGACTGGTTTCGAAGCGC 59.483 50.000 0.00 0.00 0.00 5.92
563 567 1.503818 TTGACTGGTTTCGAAGCGCC 61.504 55.000 2.29 7.16 0.00 6.53
564 568 3.011760 GACTGGTTTCGAAGCGCCG 62.012 63.158 2.29 0.45 0.00 6.46
565 569 4.445545 CTGGTTTCGAAGCGCCGC 62.446 66.667 2.29 0.00 0.00 6.53
592 596 3.846405 TTGAGGTGGGCTCGAGGGT 62.846 63.158 15.58 0.00 0.00 4.34
594 598 2.529389 AGGTGGGCTCGAGGGTTT 60.529 61.111 15.58 0.00 0.00 3.27
596 600 1.674651 GGTGGGCTCGAGGGTTTTC 60.675 63.158 15.58 0.00 0.00 2.29
600 605 0.960861 GGGCTCGAGGGTTTTCTTGG 60.961 60.000 15.58 0.00 0.00 3.61
637 642 3.181514 ACGTGGTAGCATTTTTGCGATAC 60.182 43.478 0.00 0.00 40.27 2.24
649 654 3.090219 GCGATACGGCCCTCCAGTT 62.090 63.158 0.00 0.00 0.00 3.16
698 703 1.410737 CGATGAGGTGGCAACGTACG 61.411 60.000 15.01 15.01 42.51 3.67
718 723 2.734591 GAGTGAGACGGTGCCACA 59.265 61.111 0.00 0.00 33.53 4.17
720 725 3.036084 GTGAGACGGTGCCACACG 61.036 66.667 0.00 0.34 34.83 4.49
732 737 1.265635 TGCCACACGAGCAAAATACAC 59.734 47.619 0.00 0.00 37.28 2.90
734 739 2.916111 CCACACGAGCAAAATACACAC 58.084 47.619 0.00 0.00 0.00 3.82
790 795 4.570930 GGAACAAGTTTGTCAACCCAAAA 58.429 39.130 0.00 0.00 41.31 2.44
895 900 0.379669 CAAGGATGCAAGGATGACGC 59.620 55.000 0.00 0.00 0.00 5.19
901 906 3.084579 CAAGGATGACGCAGACGC 58.915 61.111 0.00 0.00 45.53 5.19
1119 1124 2.785105 CGATTTCGACGTCCACCGC 61.785 63.158 10.58 0.00 43.02 5.68
1200 1205 2.034532 TGGACGCTCGACTACCCA 59.965 61.111 0.00 0.00 0.00 4.51
1275 1280 2.827190 TCCCTCGTCGACATCCCG 60.827 66.667 17.16 0.53 0.00 5.14
1278 1283 2.408022 CTCGTCGACATCCCGGTC 59.592 66.667 17.16 0.00 34.42 4.79
1360 1368 1.456518 CTCCTCCTCCTCGCATCCA 60.457 63.158 0.00 0.00 0.00 3.41
1503 1511 2.653115 GGGCTGCTGTTGCTTTCC 59.347 61.111 0.00 0.00 40.48 3.13
1947 1955 8.971321 TGTAAAGTTTCGAGTAATTACTGTGTC 58.029 33.333 22.68 7.60 36.50 3.67
2232 2985 4.833478 AAGTATGTCCAGAACTCTGCAT 57.167 40.909 0.89 3.66 42.47 3.96
2264 3017 7.370383 ACACAATTATGTTGGCTAAAGTTCAG 58.630 34.615 0.00 0.00 37.82 3.02
2365 3118 2.790433 TGCCCTAATGTGAGTTTGTCC 58.210 47.619 0.00 0.00 0.00 4.02
2411 3164 9.676195 CATTTTATGTGTCAACAGTAATTGTCA 57.324 29.630 0.00 0.00 39.73 3.58
2767 3686 8.071967 CACATAAACAGTCATACCAATATGCTG 58.928 37.037 12.88 12.88 42.50 4.41
3791 4715 5.824624 GGGAGAAATTAGATGCATCAGACAA 59.175 40.000 27.81 15.63 0.00 3.18
3890 4814 6.946009 TCTCGACTATTCCATCACCATGTATA 59.054 38.462 0.00 0.00 0.00 1.47
4359 5285 9.935241 ATTTGCTATCTGTATCCATGTAGTTAG 57.065 33.333 0.00 0.00 0.00 2.34
4361 5287 6.493458 TGCTATCTGTATCCATGTAGTTAGCA 59.507 38.462 10.24 10.24 42.00 3.49
4455 5381 2.419673 CAGGTAGCATGCAAAATCGACA 59.580 45.455 21.98 0.00 0.00 4.35
4531 5457 7.063593 ACTATATAGAACTGAGCCAAGAGACA 58.936 38.462 16.79 0.00 0.00 3.41
4532 5458 6.798427 ATATAGAACTGAGCCAAGAGACAA 57.202 37.500 0.00 0.00 0.00 3.18
4533 5459 3.845781 AGAACTGAGCCAAGAGACAAA 57.154 42.857 0.00 0.00 0.00 2.83
4635 5562 1.852280 GGCAACTTCGTTTTCTTGTGC 59.148 47.619 0.00 0.00 0.00 4.57
4636 5563 2.525055 GCAACTTCGTTTTCTTGTGCA 58.475 42.857 0.00 0.00 0.00 4.57
4686 5613 5.385509 TTTATTTGCTTGCAACTACTCCC 57.614 39.130 7.60 0.00 0.00 4.30
4687 5614 2.656947 TTTGCTTGCAACTACTCCCT 57.343 45.000 7.60 0.00 0.00 4.20
4688 5615 2.185004 TTGCTTGCAACTACTCCCTC 57.815 50.000 3.70 0.00 0.00 4.30
4689 5616 1.352083 TGCTTGCAACTACTCCCTCT 58.648 50.000 0.00 0.00 0.00 3.69
4690 5617 1.002430 TGCTTGCAACTACTCCCTCTG 59.998 52.381 0.00 0.00 0.00 3.35
4691 5618 1.002544 GCTTGCAACTACTCCCTCTGT 59.997 52.381 0.00 0.00 0.00 3.41
4692 5619 2.233922 GCTTGCAACTACTCCCTCTGTA 59.766 50.000 0.00 0.00 0.00 2.74
4693 5620 3.306780 GCTTGCAACTACTCCCTCTGTAA 60.307 47.826 0.00 0.00 0.00 2.41
4694 5621 4.802918 GCTTGCAACTACTCCCTCTGTAAA 60.803 45.833 0.00 0.00 0.00 2.01
4695 5622 4.267349 TGCAACTACTCCCTCTGTAAAC 57.733 45.455 0.00 0.00 0.00 2.01
4696 5623 3.251571 GCAACTACTCCCTCTGTAAACG 58.748 50.000 0.00 0.00 0.00 3.60
4697 5624 3.251571 CAACTACTCCCTCTGTAAACGC 58.748 50.000 0.00 0.00 0.00 4.84
4698 5625 2.805194 ACTACTCCCTCTGTAAACGCT 58.195 47.619 0.00 0.00 0.00 5.07
4699 5626 2.754002 ACTACTCCCTCTGTAAACGCTC 59.246 50.000 0.00 0.00 0.00 5.03
4700 5627 1.926108 ACTCCCTCTGTAAACGCTCT 58.074 50.000 0.00 0.00 0.00 4.09
4701 5628 2.249139 ACTCCCTCTGTAAACGCTCTT 58.751 47.619 0.00 0.00 0.00 2.85
4702 5629 3.428532 ACTCCCTCTGTAAACGCTCTTA 58.571 45.455 0.00 0.00 0.00 2.10
4703 5630 4.024670 ACTCCCTCTGTAAACGCTCTTAT 58.975 43.478 0.00 0.00 0.00 1.73
4704 5631 5.198965 ACTCCCTCTGTAAACGCTCTTATA 58.801 41.667 0.00 0.00 0.00 0.98
4705 5632 5.834204 ACTCCCTCTGTAAACGCTCTTATAT 59.166 40.000 0.00 0.00 0.00 0.86
4706 5633 6.324254 ACTCCCTCTGTAAACGCTCTTATATT 59.676 38.462 0.00 0.00 0.00 1.28
4707 5634 7.120923 TCCCTCTGTAAACGCTCTTATATTT 57.879 36.000 0.00 0.00 0.00 1.40
4708 5635 7.208080 TCCCTCTGTAAACGCTCTTATATTTC 58.792 38.462 0.00 0.00 0.00 2.17
4709 5636 7.069578 TCCCTCTGTAAACGCTCTTATATTTCT 59.930 37.037 0.00 0.00 0.00 2.52
4710 5637 7.711339 CCCTCTGTAAACGCTCTTATATTTCTT 59.289 37.037 0.00 0.00 0.00 2.52
4711 5638 9.099454 CCTCTGTAAACGCTCTTATATTTCTTT 57.901 33.333 0.00 0.00 0.00 2.52
4714 5641 9.831054 CTGTAAACGCTCTTATATTTCTTTACG 57.169 33.333 0.00 0.00 0.00 3.18
4715 5642 8.810427 TGTAAACGCTCTTATATTTCTTTACGG 58.190 33.333 0.00 0.00 0.00 4.02
4716 5643 9.023967 GTAAACGCTCTTATATTTCTTTACGGA 57.976 33.333 0.00 0.00 0.00 4.69
4717 5644 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
4718 5645 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
4719 5646 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
4720 5647 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
4721 5648 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
4722 5649 7.255871 GCTCTTATATTTCTTTACGGAGGGAGA 60.256 40.741 0.00 0.00 0.00 3.71
4723 5650 8.543293 TCTTATATTTCTTTACGGAGGGAGAA 57.457 34.615 0.00 0.00 0.00 2.87
4724 5651 8.419442 TCTTATATTTCTTTACGGAGGGAGAAC 58.581 37.037 0.00 0.00 0.00 3.01
4725 5652 6.809976 ATATTTCTTTACGGAGGGAGAACT 57.190 37.500 0.00 0.00 0.00 3.01
4739 5666 7.371159 GGAGGGAGAACTATTTGTTTTTCTTG 58.629 38.462 0.00 0.00 39.30 3.02
4753 5680 6.764379 TGTTTTTCTTGGGTGTTTCTTTTCT 58.236 32.000 0.00 0.00 0.00 2.52
5001 5931 8.985315 TTTATTCTGCAATAGATGAACATCCT 57.015 30.769 10.63 2.64 38.58 3.24
5002 5932 8.985315 TTATTCTGCAATAGATGAACATCCTT 57.015 30.769 10.63 3.51 38.58 3.36
5003 5933 7.893124 ATTCTGCAATAGATGAACATCCTTT 57.107 32.000 10.63 3.36 38.58 3.11
5004 5934 7.707624 TTCTGCAATAGATGAACATCCTTTT 57.292 32.000 10.63 1.24 38.58 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.413438 GGTTATGTTTCTCTGTTAGTCATGCAG 60.413 40.741 0.00 0.00 0.00 4.41
58 59 9.590451 CATGTTAATCATGCAGAAATTAAGGTT 57.410 29.630 9.82 0.00 45.69 3.50
72 73 4.381185 AGCACTTGGCACATGTTAATCATG 60.381 41.667 0.00 13.24 44.54 3.07
73 74 3.765511 AGCACTTGGCACATGTTAATCAT 59.234 39.130 0.00 0.00 44.54 2.45
74 75 3.156293 AGCACTTGGCACATGTTAATCA 58.844 40.909 0.00 0.00 44.54 2.57
75 76 3.855689 AGCACTTGGCACATGTTAATC 57.144 42.857 0.00 0.00 44.54 1.75
76 77 3.443681 GGTAGCACTTGGCACATGTTAAT 59.556 43.478 0.00 0.00 44.54 1.40
77 78 2.817258 GGTAGCACTTGGCACATGTTAA 59.183 45.455 0.00 0.00 44.54 2.01
78 79 2.039746 AGGTAGCACTTGGCACATGTTA 59.960 45.455 0.00 0.00 44.54 2.41
79 80 1.202927 AGGTAGCACTTGGCACATGTT 60.203 47.619 0.00 0.00 44.54 2.71
91 92 2.570302 TCCTAGGGTTTGAAGGTAGCAC 59.430 50.000 9.46 0.00 0.00 4.40
94 95 5.338463 CCTCTTTCCTAGGGTTTGAAGGTAG 60.338 48.000 9.46 1.52 0.00 3.18
107 108 5.422214 TCTGTTTTAGGCCTCTTTCCTAG 57.578 43.478 9.68 0.31 37.48 3.02
115 116 1.279271 TCTGGCTCTGTTTTAGGCCTC 59.721 52.381 9.68 0.00 40.99 4.70
153 154 7.290014 TGTTCCTTGATAGCTATGGAAGTATGA 59.710 37.037 19.36 8.79 37.46 2.15
161 163 7.445121 TCTGTTATGTTCCTTGATAGCTATGG 58.555 38.462 11.94 6.61 0.00 2.74
173 175 0.541863 CCCGGCTCTGTTATGTTCCT 59.458 55.000 0.00 0.00 0.00 3.36
180 182 0.251073 GGTTAAGCCCGGCTCTGTTA 59.749 55.000 13.72 0.00 38.25 2.41
190 192 2.168496 GGTTTTGAGGAGGTTAAGCCC 58.832 52.381 0.00 2.67 38.26 5.19
197 200 2.267192 GAGGTAGGGTTTTGAGGAGGT 58.733 52.381 0.00 0.00 0.00 3.85
200 203 2.266279 CAGGAGGTAGGGTTTTGAGGA 58.734 52.381 0.00 0.00 0.00 3.71
211 214 0.033796 TGGTCCGGTACAGGAGGTAG 60.034 60.000 15.62 0.00 41.68 3.18
215 218 1.218316 GCTTGGTCCGGTACAGGAG 59.782 63.158 15.62 4.87 41.68 3.69
217 220 0.035439 ATTGCTTGGTCCGGTACAGG 60.035 55.000 5.57 5.57 0.00 4.00
246 249 1.593196 CCTGTTGCTCCTCGTTTTGA 58.407 50.000 0.00 0.00 0.00 2.69
291 294 2.416547 CGTGTTCATGTCCCTGTTCATC 59.583 50.000 0.00 0.00 0.00 2.92
299 302 1.270625 TGTTCCTCGTGTTCATGTCCC 60.271 52.381 0.00 0.00 0.00 4.46
300 303 2.069273 CTGTTCCTCGTGTTCATGTCC 58.931 52.381 0.00 0.00 0.00 4.02
301 304 2.069273 CCTGTTCCTCGTGTTCATGTC 58.931 52.381 0.00 0.00 0.00 3.06
302 305 1.270839 CCCTGTTCCTCGTGTTCATGT 60.271 52.381 0.00 0.00 0.00 3.21
303 306 1.001974 TCCCTGTTCCTCGTGTTCATG 59.998 52.381 0.00 0.00 0.00 3.07
304 307 1.002087 GTCCCTGTTCCTCGTGTTCAT 59.998 52.381 0.00 0.00 0.00 2.57
315 318 2.616510 CCCTGTTCATCTGTCCCTGTTC 60.617 54.545 0.00 0.00 0.00 3.18
316 319 1.352352 CCCTGTTCATCTGTCCCTGTT 59.648 52.381 0.00 0.00 0.00 3.16
317 320 0.987294 CCCTGTTCATCTGTCCCTGT 59.013 55.000 0.00 0.00 0.00 4.00
318 321 1.065854 GTCCCTGTTCATCTGTCCCTG 60.066 57.143 0.00 0.00 0.00 4.45
319 322 1.280457 GTCCCTGTTCATCTGTCCCT 58.720 55.000 0.00 0.00 0.00 4.20
320 323 0.984230 TGTCCCTGTTCATCTGTCCC 59.016 55.000 0.00 0.00 0.00 4.46
321 324 2.237143 TCATGTCCCTGTTCATCTGTCC 59.763 50.000 0.00 0.00 0.00 4.02
322 325 3.529533 CTCATGTCCCTGTTCATCTGTC 58.470 50.000 0.00 0.00 0.00 3.51
323 326 2.355513 GCTCATGTCCCTGTTCATCTGT 60.356 50.000 0.00 0.00 0.00 3.41
324 327 2.286872 GCTCATGTCCCTGTTCATCTG 58.713 52.381 0.00 0.00 0.00 2.90
325 328 1.134580 CGCTCATGTCCCTGTTCATCT 60.135 52.381 0.00 0.00 0.00 2.90
326 329 1.293924 CGCTCATGTCCCTGTTCATC 58.706 55.000 0.00 0.00 0.00 2.92
327 330 0.107508 CCGCTCATGTCCCTGTTCAT 60.108 55.000 0.00 0.00 0.00 2.57
328 331 1.296392 CCGCTCATGTCCCTGTTCA 59.704 57.895 0.00 0.00 0.00 3.18
329 332 2.109126 GCCGCTCATGTCCCTGTTC 61.109 63.158 0.00 0.00 0.00 3.18
330 333 2.045926 GCCGCTCATGTCCCTGTT 60.046 61.111 0.00 0.00 0.00 3.16
331 334 4.457496 CGCCGCTCATGTCCCTGT 62.457 66.667 0.00 0.00 0.00 4.00
475 479 1.401905 GCTGATCGCCTAGGGTTTTTG 59.598 52.381 11.72 0.00 0.00 2.44
476 480 1.751437 GCTGATCGCCTAGGGTTTTT 58.249 50.000 11.72 0.00 0.00 1.94
517 521 2.503765 GGAAAGAGAAGAGAAGGGAGGG 59.496 54.545 0.00 0.00 0.00 4.30
523 527 6.371271 GTCAATTCAGGGAAAGAGAAGAGAAG 59.629 42.308 0.00 0.00 0.00 2.85
545 549 1.959226 GGCGCTTCGAAACCAGTCA 60.959 57.895 7.64 0.00 0.00 3.41
563 567 4.657824 ACCTCAACACCGTCGGCG 62.658 66.667 12.28 0.29 37.95 6.46
564 568 3.041940 CACCTCAACACCGTCGGC 61.042 66.667 12.28 0.00 0.00 5.54
565 569 2.357034 CCACCTCAACACCGTCGG 60.357 66.667 10.48 10.48 0.00 4.79
575 579 3.846405 AACCCTCGAGCCCACCTCA 62.846 63.158 6.99 0.00 40.78 3.86
592 596 4.193090 TCGTACTGCAGTTTCCAAGAAAA 58.807 39.130 27.06 0.00 0.00 2.29
594 598 3.462483 TCGTACTGCAGTTTCCAAGAA 57.538 42.857 27.06 0.09 0.00 2.52
596 600 2.096909 CGTTCGTACTGCAGTTTCCAAG 60.097 50.000 27.06 9.38 0.00 3.61
600 605 1.191647 CCACGTTCGTACTGCAGTTTC 59.808 52.381 27.06 17.11 0.00 2.78
668 673 2.107141 CTCATCGTTCGAGGGGCC 59.893 66.667 7.00 0.00 0.00 5.80
710 715 0.878416 TATTTTGCTCGTGTGGCACC 59.122 50.000 16.26 5.60 39.55 5.01
712 717 1.265635 GTGTATTTTGCTCGTGTGGCA 59.734 47.619 0.00 0.00 37.97 4.92
718 723 4.276460 GTTTTCGTGTGTATTTTGCTCGT 58.724 39.130 0.00 0.00 0.00 4.18
720 725 3.662186 CCGTTTTCGTGTGTATTTTGCTC 59.338 43.478 0.00 0.00 42.35 4.26
754 759 2.510464 TTCCGCGTGCGCACATAT 60.510 55.556 37.03 0.00 42.06 1.78
790 795 8.682936 AGTCACTGAATTCAGAAACTGTAATT 57.317 30.769 36.15 15.80 46.59 1.40
828 833 1.878088 ACAGTCACTAAGCTCGTTCGA 59.122 47.619 0.00 0.00 0.00 3.71
876 881 0.379669 GCGTCATCCTTGCATCCTTG 59.620 55.000 0.00 0.00 0.00 3.61
877 882 0.035152 TGCGTCATCCTTGCATCCTT 60.035 50.000 0.00 0.00 32.86 3.36
878 883 0.463295 CTGCGTCATCCTTGCATCCT 60.463 55.000 0.00 0.00 38.07 3.24
879 884 0.462581 TCTGCGTCATCCTTGCATCC 60.463 55.000 0.00 0.00 38.07 3.51
880 885 0.654683 GTCTGCGTCATCCTTGCATC 59.345 55.000 0.00 0.00 38.07 3.91
881 886 1.086067 CGTCTGCGTCATCCTTGCAT 61.086 55.000 0.00 0.00 38.07 3.96
882 887 1.737735 CGTCTGCGTCATCCTTGCA 60.738 57.895 0.00 0.00 37.07 4.08
895 900 1.742768 GTGGATCTAGGGGCGTCTG 59.257 63.158 0.00 0.00 0.00 3.51
901 906 1.457643 TCAGCCGTGGATCTAGGGG 60.458 63.158 18.18 5.91 0.00 4.79
1119 1124 2.496817 GTGAGGGCGAGCCAGTAG 59.503 66.667 16.65 0.00 37.98 2.57
1180 1185 1.428620 GGTAGTCGAGCGTCCACTC 59.571 63.158 0.00 0.00 0.00 3.51
1200 1205 1.826096 GAGAAGTAGGCGAAGAAGGGT 59.174 52.381 0.00 0.00 0.00 4.34
2232 2985 8.856153 TTAGCCAACATAATTGTGTCTAAGAA 57.144 30.769 8.40 0.00 35.83 2.52
2264 3017 6.657836 ATACCTGTACTAAATTCACGTTGC 57.342 37.500 0.00 0.00 0.00 4.17
3109 4030 6.559810 TGCAATCCATAAGGTTCAAATAACG 58.440 36.000 0.00 0.00 35.89 3.18
3437 4360 5.689068 GCATCAAAGGAAGTGAAAGAAACAG 59.311 40.000 0.00 0.00 0.00 3.16
3516 4439 0.990374 ATTGCTCAGAGGGCTCAAGT 59.010 50.000 0.00 0.00 0.00 3.16
3769 4693 7.312657 TGTTGTCTGATGCATCTAATTTCTC 57.687 36.000 26.32 11.07 0.00 2.87
3808 4732 3.276857 CCAAACTGATCCATCCAGTGAG 58.723 50.000 0.00 0.00 43.42 3.51
4361 5287 2.805671 TCGAACGTGAAATGCAGATGTT 59.194 40.909 0.00 0.00 0.00 2.71
4398 5324 6.888632 AGGCATACACATTTCTCAAGAGATTT 59.111 34.615 0.00 0.00 37.29 2.17
4446 5372 5.200368 ACATTTTTCCTGCTGTCGATTTT 57.800 34.783 0.00 0.00 0.00 1.82
4455 5381 2.224354 CCTGCCAAACATTTTTCCTGCT 60.224 45.455 0.00 0.00 0.00 4.24
4572 5499 6.154445 GCTGAAGAAGAAATGCAAAGAATGA 58.846 36.000 0.00 0.00 0.00 2.57
4631 5558 0.538584 CTCATAGTGGGCTCTGCACA 59.461 55.000 0.00 0.00 40.85 4.57
4632 5559 0.539051 ACTCATAGTGGGCTCTGCAC 59.461 55.000 0.00 0.00 0.00 4.57
4634 5561 2.409948 AAACTCATAGTGGGCTCTGC 57.590 50.000 0.00 0.00 0.00 4.26
4635 5562 6.115446 TCAAATAAACTCATAGTGGGCTCTG 58.885 40.000 0.00 0.00 0.00 3.35
4636 5563 6.313519 TCAAATAAACTCATAGTGGGCTCT 57.686 37.500 0.00 0.00 0.00 4.09
4666 5593 4.019321 AGAGGGAGTAGTTGCAAGCAAATA 60.019 41.667 9.32 9.96 37.70 1.40
4684 5611 7.210873 AGAAATATAAGAGCGTTTACAGAGGG 58.789 38.462 0.00 0.00 0.00 4.30
4685 5612 8.649973 AAGAAATATAAGAGCGTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
4688 5615 9.831054 CGTAAAGAAATATAAGAGCGTTTACAG 57.169 33.333 0.00 0.00 31.53 2.74
4689 5616 8.810427 CCGTAAAGAAATATAAGAGCGTTTACA 58.190 33.333 0.00 0.00 31.53 2.41
4690 5617 9.023967 TCCGTAAAGAAATATAAGAGCGTTTAC 57.976 33.333 0.00 0.00 0.00 2.01
4691 5618 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
4692 5619 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
4693 5620 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
4694 5621 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
4695 5622 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
4696 5623 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
4697 5624 8.179509 TCTCCCTCCGTAAAGAAATATAAGAG 57.820 38.462 0.00 0.00 0.00 2.85
4698 5625 8.419442 GTTCTCCCTCCGTAAAGAAATATAAGA 58.581 37.037 0.00 0.00 30.10 2.10
4699 5626 8.422566 AGTTCTCCCTCCGTAAAGAAATATAAG 58.577 37.037 0.00 0.00 30.10 1.73
4700 5627 8.315220 AGTTCTCCCTCCGTAAAGAAATATAA 57.685 34.615 0.00 0.00 30.10 0.98
4701 5628 7.909485 AGTTCTCCCTCCGTAAAGAAATATA 57.091 36.000 0.00 0.00 30.10 0.86
4702 5629 6.809976 AGTTCTCCCTCCGTAAAGAAATAT 57.190 37.500 0.00 0.00 30.10 1.28
4703 5630 7.909485 ATAGTTCTCCCTCCGTAAAGAAATA 57.091 36.000 0.00 0.00 34.17 1.40
4704 5631 6.809976 ATAGTTCTCCCTCCGTAAAGAAAT 57.190 37.500 0.00 0.00 31.73 2.17
4705 5632 6.616237 AATAGTTCTCCCTCCGTAAAGAAA 57.384 37.500 0.00 0.00 30.10 2.52
4706 5633 6.013984 ACAAATAGTTCTCCCTCCGTAAAGAA 60.014 38.462 0.00 0.00 0.00 2.52
4707 5634 5.482878 ACAAATAGTTCTCCCTCCGTAAAGA 59.517 40.000 0.00 0.00 0.00 2.52
4708 5635 5.731591 ACAAATAGTTCTCCCTCCGTAAAG 58.268 41.667 0.00 0.00 0.00 1.85
4709 5636 5.750352 ACAAATAGTTCTCCCTCCGTAAA 57.250 39.130 0.00 0.00 0.00 2.01
4710 5637 5.750352 AACAAATAGTTCTCCCTCCGTAA 57.250 39.130 0.00 0.00 34.74 3.18
4711 5638 5.750352 AAACAAATAGTTCTCCCTCCGTA 57.250 39.130 0.00 0.00 40.26 4.02
4712 5639 4.635699 AAACAAATAGTTCTCCCTCCGT 57.364 40.909 0.00 0.00 40.26 4.69
4713 5640 5.705905 AGAAAAACAAATAGTTCTCCCTCCG 59.294 40.000 0.00 0.00 40.26 4.63
4714 5641 7.371159 CAAGAAAAACAAATAGTTCTCCCTCC 58.629 38.462 0.00 0.00 40.26 4.30
4715 5642 7.371159 CCAAGAAAAACAAATAGTTCTCCCTC 58.629 38.462 0.00 0.00 40.26 4.30
4716 5643 6.267699 CCCAAGAAAAACAAATAGTTCTCCCT 59.732 38.462 0.00 0.00 40.26 4.20
4717 5644 6.041637 ACCCAAGAAAAACAAATAGTTCTCCC 59.958 38.462 0.00 0.00 40.26 4.30
4718 5645 6.923508 CACCCAAGAAAAACAAATAGTTCTCC 59.076 38.462 0.00 0.00 40.26 3.71
4719 5646 7.489160 ACACCCAAGAAAAACAAATAGTTCTC 58.511 34.615 0.00 0.00 40.26 2.87
4720 5647 7.418337 ACACCCAAGAAAAACAAATAGTTCT 57.582 32.000 0.00 0.00 40.26 3.01
4721 5648 8.487313 AAACACCCAAGAAAAACAAATAGTTC 57.513 30.769 0.00 0.00 40.26 3.01
4722 5649 8.318412 AGAAACACCCAAGAAAAACAAATAGTT 58.682 29.630 0.00 0.00 43.89 2.24
4723 5650 7.847096 AGAAACACCCAAGAAAAACAAATAGT 58.153 30.769 0.00 0.00 0.00 2.12
4724 5651 8.716646 AAGAAACACCCAAGAAAAACAAATAG 57.283 30.769 0.00 0.00 0.00 1.73
4725 5652 9.508642 AAAAGAAACACCCAAGAAAAACAAATA 57.491 25.926 0.00 0.00 0.00 1.40
4838 5766 9.897744 CAAAAGTGAAAATAGATAGACAAAGCA 57.102 29.630 0.00 0.00 0.00 3.91
4839 5767 9.899226 ACAAAAGTGAAAATAGATAGACAAAGC 57.101 29.630 0.00 0.00 0.00 3.51
4893 5821 9.777297 AGCACAAAAAGGACATACAAATAAAAT 57.223 25.926 0.00 0.00 0.00 1.82
4902 5830 9.289303 CATGTATTTAGCACAAAAAGGACATAC 57.711 33.333 0.00 0.00 30.84 2.39
4937 5865 6.260714 GGAAAAATAAATGTTCATGCATCCCC 59.739 38.462 0.00 0.00 0.00 4.81
4975 5905 9.584008 AGGATGTTCATCTATTGCAGAATAAAT 57.416 29.630 11.73 0.00 36.67 1.40
4976 5906 8.985315 AGGATGTTCATCTATTGCAGAATAAA 57.015 30.769 11.73 0.00 36.67 1.40
4977 5907 8.985315 AAGGATGTTCATCTATTGCAGAATAA 57.015 30.769 11.73 0.00 36.67 1.40
4978 5908 8.985315 AAAGGATGTTCATCTATTGCAGAATA 57.015 30.769 11.73 0.00 36.67 1.75
4979 5909 7.893124 AAAGGATGTTCATCTATTGCAGAAT 57.107 32.000 11.73 0.00 36.67 2.40
4980 5910 7.707624 AAAAGGATGTTCATCTATTGCAGAA 57.292 32.000 11.73 0.00 36.67 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.