Multiple sequence alignment - TraesCS6D01G242400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G242400 chr6D 100.000 5737 0 0 1 5737 344338798 344333062 0.000000e+00 10595
1 TraesCS6D01G242400 chr6D 94.631 149 7 1 1 149 206560411 206560264 4.470000e-56 230
2 TraesCS6D01G242400 chr6D 92.547 161 6 6 1 155 32865196 32865356 5.780000e-55 226
3 TraesCS6D01G242400 chr6D 83.478 115 9 7 3242 3349 472377509 472377620 1.320000e-16 99
4 TraesCS6D01G242400 chr6A 90.869 2968 130 56 2840 5737 484860704 484857808 0.000000e+00 3849
5 TraesCS6D01G242400 chr6A 94.174 1150 52 12 1566 2706 484861854 484860711 0.000000e+00 1738
6 TraesCS6D01G242400 chr6A 89.411 1001 68 22 862 1834 484863162 484862172 0.000000e+00 1227
7 TraesCS6D01G242400 chr6A 83.971 680 66 23 137 780 484863933 484863261 3.800000e-171 612
8 TraesCS6D01G242400 chr6A 90.598 117 6 3 1564 1679 484862121 484862009 3.580000e-32 150
9 TraesCS6D01G242400 chr6B 92.313 1483 90 13 4276 5737 520087902 520086423 0.000000e+00 2085
10 TraesCS6D01G242400 chr6B 91.133 1421 99 13 2840 4243 520089312 520087902 0.000000e+00 1901
11 TraesCS6D01G242400 chr6B 92.308 754 40 10 833 1573 520091598 520090850 0.000000e+00 1055
12 TraesCS6D01G242400 chr6B 88.718 585 57 9 2134 2713 520089891 520089311 0.000000e+00 706
13 TraesCS6D01G242400 chr6B 89.668 542 40 8 1603 2129 520090520 520089980 0.000000e+00 676
14 TraesCS6D01G242400 chr6B 82.078 385 32 16 154 502 520100103 520099720 1.560000e-75 294
15 TraesCS6D01G242400 chr6B 89.535 172 15 3 1 171 188190669 188190838 1.250000e-51 215
16 TraesCS6D01G242400 chrUn 100.000 130 0 0 2713 2842 182431379 182431508 2.070000e-59 241
17 TraesCS6D01G242400 chrUn 99.248 133 1 0 2713 2845 231554409 231554277 2.070000e-59 241
18 TraesCS6D01G242400 chrUn 99.248 133 1 0 2713 2845 312174509 312174377 2.070000e-59 241
19 TraesCS6D01G242400 chrUn 99.248 133 1 0 2713 2845 333499774 333499642 2.070000e-59 241
20 TraesCS6D01G242400 chr7D 100.000 130 0 0 2713 2842 381935347 381935476 2.070000e-59 241
21 TraesCS6D01G242400 chr7B 100.000 130 0 0 2713 2842 460331752 460331881 2.070000e-59 241
22 TraesCS6D01G242400 chr7B 99.248 133 1 0 2713 2845 531980496 531980364 2.070000e-59 241
23 TraesCS6D01G242400 chr7A 99.248 133 1 0 2713 2845 60215021 60214889 2.070000e-59 241
24 TraesCS6D01G242400 chr5A 100.000 130 0 0 2713 2842 420153864 420153993 2.070000e-59 241
25 TraesCS6D01G242400 chr5A 91.071 168 10 4 1 166 640948230 640948066 7.480000e-54 222
26 TraesCS6D01G242400 chr1A 97.163 141 4 0 1 141 132544195 132544055 7.430000e-59 239
27 TraesCS6D01G242400 chr4A 95.270 148 6 1 1 147 582530004 582530151 3.460000e-57 233
28 TraesCS6D01G242400 chr3B 95.833 144 6 0 1 144 752110270 752110413 3.460000e-57 233
29 TraesCS6D01G242400 chr4B 92.949 156 7 4 1 153 605505817 605505971 2.080000e-54 224
30 TraesCS6D01G242400 chr5B 91.515 165 8 4 1 160 637923704 637923541 7.480000e-54 222


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G242400 chr6D 344333062 344338798 5736 True 10595.0 10595 100.0000 1 5737 1 chr6D.!!$R2 5736
1 TraesCS6D01G242400 chr6A 484857808 484863933 6125 True 1515.2 3849 89.8046 137 5737 5 chr6A.!!$R1 5600
2 TraesCS6D01G242400 chr6B 520086423 520091598 5175 True 1284.6 2085 90.8280 833 5737 5 chr6B.!!$R2 4904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
298 305 0.539051 CGCTCATCCTTCCTCCAACT 59.461 55.0 0.00 0.0 0.00 3.16 F
1376 1446 0.453782 GCGAATTACGTGGTGGTTGC 60.454 55.0 0.00 0.0 44.60 4.17 F
1802 2636 1.171308 CTGCACTTCATCTGGTTGGG 58.829 55.0 0.00 0.0 0.00 4.12 F
2751 3680 2.990740 TCAACTTAACATGCCCCCTT 57.009 45.0 0.00 0.0 0.00 3.95 F
2772 3701 0.037232 CTTCCTTCGTGACCTCCCAC 60.037 60.0 0.00 0.0 0.00 4.61 F
3375 4328 0.108992 ATGCTGCATTTCAACAGGCG 60.109 50.0 9.81 0.0 34.38 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1392 1462 1.525995 AAACGGTGCTCCCACACAG 60.526 57.895 0.00 0.00 43.88 3.66 R
2753 3682 0.037232 GTGGGAGGTCACGAAGGAAG 60.037 60.000 0.00 0.00 0.00 3.46 R
2755 3684 0.406750 TAGTGGGAGGTCACGAAGGA 59.593 55.000 0.00 0.00 42.10 3.36 R
3932 4886 0.459585 GCCGGTACTTCGAAGCATCA 60.460 55.000 24.86 5.22 0.00 3.07 R
4625 5619 1.032114 CAGGGATGCCGGTTTCCTTC 61.032 60.000 20.03 8.31 32.34 3.46 R
5250 6257 0.176680 ACCTGGAGACTGCTTATGCG 59.823 55.000 0.00 0.00 43.34 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.488651 TTTTTAGAGATTTCGAATGGACTACC 57.511 34.615 0.00 0.00 0.00 3.18
43 44 9.462606 TGGACTACCACATACAGATGTATATAG 57.537 37.037 5.21 7.73 44.82 1.31
44 45 9.682465 GGACTACCACATACAGATGTATATAGA 57.318 37.037 5.21 0.00 44.82 1.98
78 79 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
79 80 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
80 81 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
81 82 6.148480 GTGTAGATTCACTCATTTTGCTCTGT 59.852 38.462 0.00 0.00 35.68 3.41
82 83 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
83 84 6.734104 AGATTCACTCATTTTGCTCTGTAC 57.266 37.500 0.00 0.00 0.00 2.90
84 85 4.990543 TTCACTCATTTTGCTCTGTACG 57.009 40.909 0.00 0.00 0.00 3.67
85 86 3.990092 TCACTCATTTTGCTCTGTACGT 58.010 40.909 0.00 0.00 0.00 3.57
86 87 5.128992 TCACTCATTTTGCTCTGTACGTA 57.871 39.130 0.00 0.00 0.00 3.57
87 88 5.161358 TCACTCATTTTGCTCTGTACGTAG 58.839 41.667 0.00 0.00 0.00 3.51
89 90 5.061064 CACTCATTTTGCTCTGTACGTAGTC 59.939 44.000 0.00 0.00 43.93 2.59
90 91 5.128992 TCATTTTGCTCTGTACGTAGTCA 57.871 39.130 0.00 0.00 43.93 3.41
91 92 4.921515 TCATTTTGCTCTGTACGTAGTCAC 59.078 41.667 0.00 0.00 43.93 3.67
92 93 4.579454 TTTTGCTCTGTACGTAGTCACT 57.421 40.909 0.00 0.00 43.93 3.41
93 94 4.579454 TTTGCTCTGTACGTAGTCACTT 57.421 40.909 0.00 0.00 43.93 3.16
94 95 3.554259 TGCTCTGTACGTAGTCACTTG 57.446 47.619 0.00 0.00 43.93 3.16
95 96 2.882761 TGCTCTGTACGTAGTCACTTGT 59.117 45.455 0.00 0.00 43.93 3.16
96 97 3.317149 TGCTCTGTACGTAGTCACTTGTT 59.683 43.478 0.00 0.00 43.93 2.83
97 98 3.669122 GCTCTGTACGTAGTCACTTGTTG 59.331 47.826 0.00 0.00 43.93 3.33
98 99 4.556104 GCTCTGTACGTAGTCACTTGTTGA 60.556 45.833 0.00 0.00 43.93 3.18
99 100 5.503662 TCTGTACGTAGTCACTTGTTGAA 57.496 39.130 0.00 0.00 43.93 2.69
100 101 5.893687 TCTGTACGTAGTCACTTGTTGAAA 58.106 37.500 0.00 0.00 43.93 2.69
101 102 6.509656 TCTGTACGTAGTCACTTGTTGAAAT 58.490 36.000 0.00 0.00 43.93 2.17
102 103 6.639686 TCTGTACGTAGTCACTTGTTGAAATC 59.360 38.462 0.00 0.00 43.93 2.17
103 104 6.509656 TGTACGTAGTCACTTGTTGAAATCT 58.490 36.000 0.00 0.00 43.93 2.40
104 105 6.639686 TGTACGTAGTCACTTGTTGAAATCTC 59.360 38.462 0.00 0.00 43.93 2.75
105 106 5.844004 ACGTAGTCACTTGTTGAAATCTCT 58.156 37.500 0.00 0.00 29.74 3.10
106 107 6.978338 ACGTAGTCACTTGTTGAAATCTCTA 58.022 36.000 0.00 0.00 29.74 2.43
107 108 7.085116 ACGTAGTCACTTGTTGAAATCTCTAG 58.915 38.462 0.00 0.00 29.74 2.43
108 109 7.040617 ACGTAGTCACTTGTTGAAATCTCTAGA 60.041 37.037 0.00 0.00 29.74 2.43
109 110 7.808381 CGTAGTCACTTGTTGAAATCTCTAGAA 59.192 37.037 0.00 0.00 35.39 2.10
110 111 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
111 112 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
112 113 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
113 114 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
114 115 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
115 116 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
116 117 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
129 130 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
130 131 7.625828 AGAAAGACAAATATTTAGGAACGGG 57.374 36.000 0.00 0.00 0.00 5.28
131 132 6.602009 AGAAAGACAAATATTTAGGAACGGGG 59.398 38.462 0.00 0.00 0.00 5.73
132 133 4.788679 AGACAAATATTTAGGAACGGGGG 58.211 43.478 0.00 0.00 0.00 5.40
198 199 4.599041 TGCAAGGCAAATAATACTCCACT 58.401 39.130 0.00 0.00 34.76 4.00
250 251 4.219725 TCCGTGTTGTCATTGTATCTCTCA 59.780 41.667 0.00 0.00 0.00 3.27
252 253 5.582269 CCGTGTTGTCATTGTATCTCTCATT 59.418 40.000 0.00 0.00 0.00 2.57
282 289 1.286248 ATAGGGTTCTTTGGTCCGCT 58.714 50.000 0.00 0.00 0.00 5.52
286 293 1.087501 GGTTCTTTGGTCCGCTCATC 58.912 55.000 0.00 0.00 0.00 2.92
298 305 0.539051 CGCTCATCCTTCCTCCAACT 59.461 55.000 0.00 0.00 0.00 3.16
308 337 0.793617 TCCTCCAACTTCTCCCTCCT 59.206 55.000 0.00 0.00 0.00 3.69
310 339 1.988846 CCTCCAACTTCTCCCTCCTTT 59.011 52.381 0.00 0.00 0.00 3.11
384 414 4.280436 TCCTAAAAATCGCCTCAACAGA 57.720 40.909 0.00 0.00 0.00 3.41
398 428 5.338463 GCCTCAACAGACCTACCTCTTATTT 60.338 44.000 0.00 0.00 0.00 1.40
428 458 6.912203 CCAAATAAACCGTTTTCTTTGGTT 57.088 33.333 25.31 7.45 45.39 3.67
430 460 8.067780 CCAAATAAACCGTTTTCTTTGGTTAG 57.932 34.615 25.31 12.27 45.39 2.34
450 480 8.026607 TGGTTAGACAATAAATGCTTTAAGTGC 58.973 33.333 0.00 0.00 0.00 4.40
528 559 7.716799 TTTTTGGACAAACATATAGGCTGAT 57.283 32.000 0.00 0.00 0.00 2.90
538 571 5.178797 ACATATAGGCTGATAAATGACGGC 58.821 41.667 0.00 0.00 37.63 5.68
550 584 6.774170 TGATAAATGACGGCCTAACTACTAGA 59.226 38.462 0.00 0.00 0.00 2.43
555 589 7.778185 ATGACGGCCTAACTACTAGAATATT 57.222 36.000 0.00 0.00 0.00 1.28
556 590 7.592885 TGACGGCCTAACTACTAGAATATTT 57.407 36.000 0.00 0.00 0.00 1.40
564 598 7.811713 CCTAACTACTAGAATATTTACGCACCC 59.188 40.741 0.00 0.00 0.00 4.61
634 668 5.418310 TGGAAGAAAAGAAGTTTAGCACG 57.582 39.130 0.00 0.00 0.00 5.34
642 676 2.544267 AGAAGTTTAGCACGTTGTCAGC 59.456 45.455 0.00 0.00 0.00 4.26
643 677 1.226746 AGTTTAGCACGTTGTCAGCC 58.773 50.000 0.00 0.00 0.00 4.85
648 683 1.442769 AGCACGTTGTCAGCCTAATG 58.557 50.000 0.00 0.00 0.00 1.90
650 685 1.808411 CACGTTGTCAGCCTAATGGT 58.192 50.000 0.00 0.00 35.27 3.55
659 694 2.035961 TCAGCCTAATGGTCAGCGTATC 59.964 50.000 0.00 0.00 35.27 2.24
660 695 1.344763 AGCCTAATGGTCAGCGTATCC 59.655 52.381 0.00 0.00 35.27 2.59
664 699 3.069586 CCTAATGGTCAGCGTATCCTGAA 59.930 47.826 0.00 0.00 42.98 3.02
674 709 7.766278 GGTCAGCGTATCCTGAATTATGAATAT 59.234 37.037 0.00 0.00 42.98 1.28
739 774 2.029828 ACAACACGAAAACCTGCAAACA 60.030 40.909 0.00 0.00 0.00 2.83
960 1030 3.081804 CAAAACCCTACATCTCCACACC 58.918 50.000 0.00 0.00 0.00 4.16
1140 1210 1.385756 GCCTGAGGGTCTACTCGTCC 61.386 65.000 0.00 0.00 40.39 4.79
1312 1382 1.228894 TCCCAGGTCTGTCGCTTCT 60.229 57.895 0.00 0.00 0.00 2.85
1317 1387 1.080434 GGTCTGTCGCTTCTTCGCT 60.080 57.895 0.00 0.00 0.00 4.93
1376 1446 0.453782 GCGAATTACGTGGTGGTTGC 60.454 55.000 0.00 0.00 44.60 4.17
1383 1453 3.670377 GTGGTGGTTGCTTCGGCC 61.670 66.667 0.00 0.00 40.91 6.13
1392 1462 2.436115 GCTTCGGCCAGGTGTACC 60.436 66.667 2.24 0.00 34.32 3.34
1408 1478 3.941188 CCTGTGTGGGAGCACCGT 61.941 66.667 0.00 0.00 44.64 4.83
1411 1481 1.785041 CTGTGTGGGAGCACCGTTTG 61.785 60.000 0.00 0.00 44.64 2.93
1424 1494 3.900941 CACCGTTTGCTTGCTAAGATTT 58.099 40.909 0.00 0.00 0.00 2.17
1425 1495 3.670055 CACCGTTTGCTTGCTAAGATTTG 59.330 43.478 0.00 0.00 0.00 2.32
1457 1527 4.211374 CGGGATGTATTAGCTTGCAGTTAC 59.789 45.833 0.00 0.00 0.00 2.50
1459 1529 5.765182 GGGATGTATTAGCTTGCAGTTACAT 59.235 40.000 0.00 11.35 34.06 2.29
1461 1531 6.867662 ATGTATTAGCTTGCAGTTACATCC 57.132 37.500 0.00 0.00 0.00 3.51
1471 1541 5.134202 TGCAGTTACATCCGGATATACTG 57.866 43.478 30.01 30.01 0.00 2.74
1513 1600 7.719633 GGACTTAATTTTGCATCTGGATAGGTA 59.280 37.037 0.00 0.00 0.00 3.08
1560 1647 4.649218 ACTGTAAACTGAAACCCTGCAATT 59.351 37.500 0.00 0.00 0.00 2.32
1561 1648 5.195001 TGTAAACTGAAACCCTGCAATTC 57.805 39.130 0.00 0.00 0.00 2.17
1563 1650 2.683211 ACTGAAACCCTGCAATTCCT 57.317 45.000 0.00 0.00 0.00 3.36
1593 2152 2.683362 TGTGTGCTACGATCTCCTAGTG 59.317 50.000 0.00 0.00 0.00 2.74
1696 2529 9.453572 TCTTGTGTCTAAATAGCATGATTTCTT 57.546 29.630 0.00 0.00 31.51 2.52
1802 2636 1.171308 CTGCACTTCATCTGGTTGGG 58.829 55.000 0.00 0.00 0.00 4.12
2094 2936 6.875469 AGGTACTTCCCATAGATTATGAGGA 58.125 40.000 0.00 1.23 34.17 3.71
2190 3116 3.379372 TCGCACTACATAACTAGGTGGAC 59.621 47.826 0.00 0.00 0.00 4.02
2218 3144 6.850263 TGGGGGATTTGTTACTGGATATTA 57.150 37.500 0.00 0.00 0.00 0.98
2281 3208 6.424812 GCCTTTTCACAATTTGCTAGTTCATT 59.575 34.615 0.00 0.00 0.00 2.57
2286 3213 6.680810 TCACAATTTGCTAGTTCATTGAAGG 58.319 36.000 13.60 0.00 32.07 3.46
2294 3221 9.733556 TTTGCTAGTTCATTGAAGGTTATAAGA 57.266 29.630 0.00 0.00 0.00 2.10
2302 3229 7.988737 TCATTGAAGGTTATAAGATGCAACTG 58.011 34.615 0.00 0.00 0.00 3.16
2324 3251 7.879070 ACTGATCGACTGTAACTGTTACTTTA 58.121 34.615 25.91 9.84 37.06 1.85
2326 3253 9.999009 CTGATCGACTGTAACTGTTACTTTATA 57.001 33.333 25.91 12.82 37.06 0.98
2486 3414 5.343307 AAAGCTTTGTTGAGGTGTGAATT 57.657 34.783 11.80 0.00 0.00 2.17
2497 3425 8.783093 TGTTGAGGTGTGAATTTAAACTCATAG 58.217 33.333 2.25 0.00 33.99 2.23
2599 3527 3.319137 TTAGCAGTACCAGCTGTGAAG 57.681 47.619 17.90 0.00 43.33 3.02
2605 3533 4.093556 GCAGTACCAGCTGTGAAGTTTATC 59.906 45.833 13.81 0.00 38.65 1.75
2617 3545 7.535599 GCTGTGAAGTTTATCAGCTTAGTTTTC 59.464 37.037 15.59 0.00 46.35 2.29
2691 3620 4.223923 AGGGAGTTCCAGAATCTACACTTG 59.776 45.833 0.00 0.00 38.24 3.16
2706 3635 7.639113 TCTACACTTGTTCCTGAATTGTTTT 57.361 32.000 0.00 0.00 0.00 2.43
2707 3636 8.062065 TCTACACTTGTTCCTGAATTGTTTTT 57.938 30.769 0.00 0.00 0.00 1.94
2708 3637 6.966435 ACACTTGTTCCTGAATTGTTTTTG 57.034 33.333 0.00 0.00 0.00 2.44
2709 3638 6.463360 ACACTTGTTCCTGAATTGTTTTTGT 58.537 32.000 0.00 0.00 0.00 2.83
2710 3639 6.368516 ACACTTGTTCCTGAATTGTTTTTGTG 59.631 34.615 0.00 0.00 0.00 3.33
2711 3640 6.368516 CACTTGTTCCTGAATTGTTTTTGTGT 59.631 34.615 0.00 0.00 0.00 3.72
2712 3641 6.934083 ACTTGTTCCTGAATTGTTTTTGTGTT 59.066 30.769 0.00 0.00 0.00 3.32
2713 3642 6.718454 TGTTCCTGAATTGTTTTTGTGTTG 57.282 33.333 0.00 0.00 0.00 3.33
2714 3643 5.121454 TGTTCCTGAATTGTTTTTGTGTTGC 59.879 36.000 0.00 0.00 0.00 4.17
2715 3644 5.083533 TCCTGAATTGTTTTTGTGTTGCT 57.916 34.783 0.00 0.00 0.00 3.91
2716 3645 6.214191 TCCTGAATTGTTTTTGTGTTGCTA 57.786 33.333 0.00 0.00 0.00 3.49
2717 3646 6.039616 TCCTGAATTGTTTTTGTGTTGCTAC 58.960 36.000 0.00 0.00 0.00 3.58
2718 3647 5.809562 CCTGAATTGTTTTTGTGTTGCTACA 59.190 36.000 0.00 0.00 0.00 2.74
2719 3648 6.312426 CCTGAATTGTTTTTGTGTTGCTACAA 59.688 34.615 1.60 0.02 38.69 2.41
2720 3649 7.011295 CCTGAATTGTTTTTGTGTTGCTACAAT 59.989 33.333 1.60 0.00 40.00 2.71
2721 3650 7.682824 TGAATTGTTTTTGTGTTGCTACAATG 58.317 30.769 1.60 0.00 40.00 2.82
2722 3651 7.332926 TGAATTGTTTTTGTGTTGCTACAATGT 59.667 29.630 1.60 0.00 40.00 2.71
2723 3652 7.608308 ATTGTTTTTGTGTTGCTACAATGTT 57.392 28.000 1.60 0.00 40.00 2.71
2724 3653 6.639671 TGTTTTTGTGTTGCTACAATGTTC 57.360 33.333 1.60 0.00 40.00 3.18
2725 3654 5.287274 TGTTTTTGTGTTGCTACAATGTTCG 59.713 36.000 1.60 0.00 40.00 3.95
2726 3655 4.884458 TTTGTGTTGCTACAATGTTCGA 57.116 36.364 1.60 0.00 40.00 3.71
2727 3656 4.884458 TTGTGTTGCTACAATGTTCGAA 57.116 36.364 1.60 0.00 35.75 3.71
2728 3657 4.884458 TGTGTTGCTACAATGTTCGAAA 57.116 36.364 1.60 0.00 35.69 3.46
2729 3658 5.431420 TGTGTTGCTACAATGTTCGAAAT 57.569 34.783 1.60 0.00 35.69 2.17
2730 3659 5.826586 TGTGTTGCTACAATGTTCGAAATT 58.173 33.333 1.60 0.00 35.69 1.82
2731 3660 6.960468 TGTGTTGCTACAATGTTCGAAATTA 58.040 32.000 1.60 0.00 35.69 1.40
2732 3661 7.589395 TGTGTTGCTACAATGTTCGAAATTAT 58.411 30.769 1.60 0.00 35.69 1.28
2733 3662 7.748683 TGTGTTGCTACAATGTTCGAAATTATC 59.251 33.333 1.60 0.00 35.69 1.75
2734 3663 7.748683 GTGTTGCTACAATGTTCGAAATTATCA 59.251 33.333 1.60 0.00 35.69 2.15
2735 3664 8.293157 TGTTGCTACAATGTTCGAAATTATCAA 58.707 29.630 0.00 3.06 0.00 2.57
2736 3665 8.575454 GTTGCTACAATGTTCGAAATTATCAAC 58.425 33.333 0.00 9.82 0.00 3.18
2737 3666 8.039603 TGCTACAATGTTCGAAATTATCAACT 57.960 30.769 0.00 0.00 0.00 3.16
2738 3667 8.511321 TGCTACAATGTTCGAAATTATCAACTT 58.489 29.630 0.00 0.00 0.00 2.66
2739 3668 9.982291 GCTACAATGTTCGAAATTATCAACTTA 57.018 29.630 0.00 0.00 0.00 2.24
2745 3674 8.667987 TGTTCGAAATTATCAACTTAACATGC 57.332 30.769 0.00 0.00 0.00 4.06
2746 3675 7.753132 TGTTCGAAATTATCAACTTAACATGCC 59.247 33.333 0.00 0.00 0.00 4.40
2747 3676 6.791303 TCGAAATTATCAACTTAACATGCCC 58.209 36.000 0.00 0.00 0.00 5.36
2748 3677 5.977129 CGAAATTATCAACTTAACATGCCCC 59.023 40.000 0.00 0.00 0.00 5.80
2749 3678 5.869649 AATTATCAACTTAACATGCCCCC 57.130 39.130 0.00 0.00 0.00 5.40
2750 3679 4.601406 TTATCAACTTAACATGCCCCCT 57.399 40.909 0.00 0.00 0.00 4.79
2751 3680 2.990740 TCAACTTAACATGCCCCCTT 57.009 45.000 0.00 0.00 0.00 3.95
2752 3681 4.601406 ATCAACTTAACATGCCCCCTTA 57.399 40.909 0.00 0.00 0.00 2.69
2753 3682 3.692690 TCAACTTAACATGCCCCCTTAC 58.307 45.455 0.00 0.00 0.00 2.34
2754 3683 3.332485 TCAACTTAACATGCCCCCTTACT 59.668 43.478 0.00 0.00 0.00 2.24
2755 3684 4.086457 CAACTTAACATGCCCCCTTACTT 58.914 43.478 0.00 0.00 0.00 2.24
2756 3685 3.964411 ACTTAACATGCCCCCTTACTTC 58.036 45.455 0.00 0.00 0.00 3.01
2757 3686 3.288092 CTTAACATGCCCCCTTACTTCC 58.712 50.000 0.00 0.00 0.00 3.46
2758 3687 1.382914 AACATGCCCCCTTACTTCCT 58.617 50.000 0.00 0.00 0.00 3.36
2759 3688 1.382914 ACATGCCCCCTTACTTCCTT 58.617 50.000 0.00 0.00 0.00 3.36
2760 3689 1.285078 ACATGCCCCCTTACTTCCTTC 59.715 52.381 0.00 0.00 0.00 3.46
2761 3690 0.546598 ATGCCCCCTTACTTCCTTCG 59.453 55.000 0.00 0.00 0.00 3.79
2762 3691 0.838987 TGCCCCCTTACTTCCTTCGT 60.839 55.000 0.00 0.00 0.00 3.85
2763 3692 0.392595 GCCCCCTTACTTCCTTCGTG 60.393 60.000 0.00 0.00 0.00 4.35
2764 3693 1.272807 CCCCCTTACTTCCTTCGTGA 58.727 55.000 0.00 0.00 0.00 4.35
2765 3694 1.066358 CCCCCTTACTTCCTTCGTGAC 60.066 57.143 0.00 0.00 0.00 3.67
2766 3695 1.066358 CCCCTTACTTCCTTCGTGACC 60.066 57.143 0.00 0.00 0.00 4.02
2767 3696 1.900486 CCCTTACTTCCTTCGTGACCT 59.100 52.381 0.00 0.00 0.00 3.85
2768 3697 2.094130 CCCTTACTTCCTTCGTGACCTC 60.094 54.545 0.00 0.00 0.00 3.85
2769 3698 2.094130 CCTTACTTCCTTCGTGACCTCC 60.094 54.545 0.00 0.00 0.00 4.30
2770 3699 1.553706 TACTTCCTTCGTGACCTCCC 58.446 55.000 0.00 0.00 0.00 4.30
2771 3700 0.471211 ACTTCCTTCGTGACCTCCCA 60.471 55.000 0.00 0.00 0.00 4.37
2772 3701 0.037232 CTTCCTTCGTGACCTCCCAC 60.037 60.000 0.00 0.00 0.00 4.61
2773 3702 0.471211 TTCCTTCGTGACCTCCCACT 60.471 55.000 0.00 0.00 35.02 4.00
2774 3703 0.406750 TCCTTCGTGACCTCCCACTA 59.593 55.000 0.00 0.00 35.02 2.74
2775 3704 0.531200 CCTTCGTGACCTCCCACTAC 59.469 60.000 0.00 0.00 35.02 2.73
2776 3705 1.546961 CTTCGTGACCTCCCACTACT 58.453 55.000 0.00 0.00 35.02 2.57
2777 3706 1.893801 CTTCGTGACCTCCCACTACTT 59.106 52.381 0.00 0.00 35.02 2.24
2778 3707 1.542492 TCGTGACCTCCCACTACTTC 58.458 55.000 0.00 0.00 35.02 3.01
2779 3708 1.202964 TCGTGACCTCCCACTACTTCA 60.203 52.381 0.00 0.00 35.02 3.02
2780 3709 1.825474 CGTGACCTCCCACTACTTCAT 59.175 52.381 0.00 0.00 35.02 2.57
2781 3710 2.159226 CGTGACCTCCCACTACTTCATC 60.159 54.545 0.00 0.00 35.02 2.92
2782 3711 3.100671 GTGACCTCCCACTACTTCATCT 58.899 50.000 0.00 0.00 34.38 2.90
2783 3712 4.279145 GTGACCTCCCACTACTTCATCTA 58.721 47.826 0.00 0.00 34.38 1.98
2784 3713 4.098196 GTGACCTCCCACTACTTCATCTAC 59.902 50.000 0.00 0.00 34.38 2.59
2785 3714 3.637694 GACCTCCCACTACTTCATCTACC 59.362 52.174 0.00 0.00 0.00 3.18
2786 3715 2.623889 CCTCCCACTACTTCATCTACCG 59.376 54.545 0.00 0.00 0.00 4.02
2787 3716 3.552875 CTCCCACTACTTCATCTACCGA 58.447 50.000 0.00 0.00 0.00 4.69
2788 3717 3.952323 CTCCCACTACTTCATCTACCGAA 59.048 47.826 0.00 0.00 0.00 4.30
2789 3718 4.346730 TCCCACTACTTCATCTACCGAAA 58.653 43.478 0.00 0.00 0.00 3.46
2790 3719 4.960469 TCCCACTACTTCATCTACCGAAAT 59.040 41.667 0.00 0.00 0.00 2.17
2791 3720 5.050490 CCCACTACTTCATCTACCGAAATG 58.950 45.833 0.00 0.00 0.00 2.32
2792 3721 5.163447 CCCACTACTTCATCTACCGAAATGA 60.163 44.000 0.00 0.00 0.00 2.57
2793 3722 6.463049 CCCACTACTTCATCTACCGAAATGAT 60.463 42.308 0.00 0.00 32.24 2.45
2794 3723 6.986817 CCACTACTTCATCTACCGAAATGATT 59.013 38.462 0.00 0.00 32.24 2.57
2795 3724 8.141909 CCACTACTTCATCTACCGAAATGATTA 58.858 37.037 0.00 0.00 32.24 1.75
2796 3725 9.186323 CACTACTTCATCTACCGAAATGATTAG 57.814 37.037 0.00 0.00 32.24 1.73
2797 3726 8.361139 ACTACTTCATCTACCGAAATGATTAGG 58.639 37.037 0.00 0.00 37.34 2.69
2798 3727 5.992217 ACTTCATCTACCGAAATGATTAGGC 59.008 40.000 0.32 0.00 34.91 3.93
2799 3728 5.545063 TCATCTACCGAAATGATTAGGCA 57.455 39.130 0.32 0.00 34.91 4.75
2800 3729 5.541845 TCATCTACCGAAATGATTAGGCAG 58.458 41.667 0.32 0.00 34.91 4.85
2801 3730 5.304357 TCATCTACCGAAATGATTAGGCAGA 59.696 40.000 5.40 5.40 34.91 4.26
2802 3731 5.808366 TCTACCGAAATGATTAGGCAGAT 57.192 39.130 0.32 0.00 34.91 2.90
2803 3732 5.784177 TCTACCGAAATGATTAGGCAGATC 58.216 41.667 0.32 0.00 34.91 2.75
2804 3733 4.696479 ACCGAAATGATTAGGCAGATCT 57.304 40.909 0.00 0.00 34.91 2.75
2805 3734 4.636249 ACCGAAATGATTAGGCAGATCTC 58.364 43.478 0.00 0.00 34.91 2.75
2806 3735 3.677121 CCGAAATGATTAGGCAGATCTCG 59.323 47.826 0.00 0.00 0.00 4.04
2807 3736 4.302455 CGAAATGATTAGGCAGATCTCGT 58.698 43.478 0.00 0.00 0.00 4.18
2808 3737 4.747108 CGAAATGATTAGGCAGATCTCGTT 59.253 41.667 0.00 0.00 0.00 3.85
2809 3738 5.235186 CGAAATGATTAGGCAGATCTCGTTT 59.765 40.000 0.00 0.00 0.00 3.60
2810 3739 6.238211 CGAAATGATTAGGCAGATCTCGTTTT 60.238 38.462 0.00 0.00 0.00 2.43
2811 3740 7.396540 AAATGATTAGGCAGATCTCGTTTTT 57.603 32.000 0.00 0.00 0.00 1.94
2831 3760 6.892658 TTTTTCTAGCATTAAACCTGCTCA 57.107 33.333 5.34 0.00 46.79 4.26
2832 3761 7.466746 TTTTTCTAGCATTAAACCTGCTCAT 57.533 32.000 5.34 0.00 46.79 2.90
2833 3762 6.441093 TTTCTAGCATTAAACCTGCTCATG 57.559 37.500 5.34 0.00 46.79 3.07
2834 3763 5.357742 TCTAGCATTAAACCTGCTCATGA 57.642 39.130 5.34 0.00 46.79 3.07
2835 3764 5.933617 TCTAGCATTAAACCTGCTCATGAT 58.066 37.500 5.34 0.00 46.79 2.45
2836 3765 5.994054 TCTAGCATTAAACCTGCTCATGATC 59.006 40.000 5.34 0.00 46.79 2.92
2837 3766 3.887716 AGCATTAAACCTGCTCATGATCC 59.112 43.478 0.00 0.00 46.79 3.36
2838 3767 3.887716 GCATTAAACCTGCTCATGATCCT 59.112 43.478 0.00 0.00 36.68 3.24
2863 3792 8.961294 TTTAGAGTCTGTAGTTAGCTTTAACG 57.039 34.615 1.86 0.00 35.25 3.18
2868 3797 9.649024 GAGTCTGTAGTTAGCTTTAACGTATAG 57.351 37.037 0.00 0.00 35.25 1.31
2875 3806 3.650139 AGCTTTAACGTATAGATGCGGG 58.350 45.455 5.03 0.00 40.26 6.13
2886 3817 2.143876 AGATGCGGGTTGGCTTAATT 57.856 45.000 0.00 0.00 0.00 1.40
2889 3820 1.254284 TGCGGGTTGGCTTAATTGGG 61.254 55.000 0.00 0.00 0.00 4.12
2900 3831 2.635427 GCTTAATTGGGGTTGGTTTGGA 59.365 45.455 0.00 0.00 0.00 3.53
2968 3899 0.819259 GCTGGCTGTGTGGTTCAGAA 60.819 55.000 0.00 0.00 35.20 3.02
3031 3980 9.654663 AATCAGTTGACAAGTTCTATACTTACC 57.345 33.333 0.00 0.00 45.29 2.85
3074 4023 3.300239 AGGCGTAGAGAACCTCAGTAT 57.700 47.619 0.00 0.00 32.06 2.12
3084 4033 7.682787 AGAGAACCTCAGTATATGAATTGGT 57.317 36.000 0.00 0.00 37.52 3.67
3090 4039 7.390027 ACCTCAGTATATGAATTGGTATCTGC 58.610 38.462 0.00 0.00 37.52 4.26
3114 4063 5.163581 CCATCAATTTTCTGAGACACATCCC 60.164 44.000 0.00 0.00 0.00 3.85
3135 4088 4.334481 CCCGTTGTCCTTATTTTATTCGCT 59.666 41.667 0.00 0.00 0.00 4.93
3360 4313 3.795688 TCACCTGAGAAGGAAAATGCT 57.204 42.857 0.00 0.00 0.00 3.79
3370 4323 4.992951 AGAAGGAAAATGCTGCATTTCAAC 59.007 37.500 33.30 25.75 42.32 3.18
3375 4328 0.108992 ATGCTGCATTTCAACAGGCG 60.109 50.000 9.81 0.00 34.38 5.52
3449 4402 7.840342 AGTCAGTTGATGTGTTCTATTCATC 57.160 36.000 0.00 0.00 38.57 2.92
3472 4425 7.916914 TCCACTGCTTAAGGACTTATTAAAC 57.083 36.000 4.29 0.00 0.00 2.01
3777 4731 4.804108 TGTGTTTTTGTTCTGTTGGTCTG 58.196 39.130 0.00 0.00 0.00 3.51
3784 4738 1.195448 GTTCTGTTGGTCTGTGATGCG 59.805 52.381 0.00 0.00 0.00 4.73
3830 4784 8.904099 AAATGTTATACCTAGTCTGGTTATGC 57.096 34.615 0.00 0.00 41.22 3.14
3870 4824 5.694006 TCAATATTTTTGCGTTTTCCACCTG 59.306 36.000 0.00 0.00 0.00 4.00
3873 4827 2.861462 TTTGCGTTTTCCACCTGAAG 57.139 45.000 0.00 0.00 33.63 3.02
3887 4841 4.220382 CCACCTGAAGCCATGTTTTTATCA 59.780 41.667 0.00 0.00 0.00 2.15
3932 4886 8.904099 ACTGTTACATAACAAGAACTTTAGCT 57.096 30.769 5.99 0.00 44.67 3.32
3954 4908 2.975536 CTTCGAAGTACCGGCCCA 59.024 61.111 17.24 0.00 0.00 5.36
3955 4909 1.153628 CTTCGAAGTACCGGCCCAG 60.154 63.158 17.24 0.00 0.00 4.45
3971 4925 1.345415 CCCAGGATGTTTGCTGCTTTT 59.655 47.619 0.00 0.00 39.80 2.27
4268 5256 6.348213 CCGGGTTATCCAATATGAATTTCGTC 60.348 42.308 0.00 0.00 34.36 4.20
4275 5263 6.802608 TCCAATATGAATTTCGTCGAGTACT 58.197 36.000 0.00 0.00 0.00 2.73
4343 5331 6.840705 ACCACCAAGAATGCTAATATGGAAAT 59.159 34.615 0.00 0.00 0.00 2.17
4402 5393 3.424300 GCAGCCAGCATTGCGATA 58.576 55.556 2.38 0.00 44.79 2.92
4422 5413 6.956694 CGATAAACTTTCTTCGCATGTTTTC 58.043 36.000 0.00 0.00 33.63 2.29
4424 5415 3.963383 ACTTTCTTCGCATGTTTTCGT 57.037 38.095 0.00 0.00 0.00 3.85
4425 5416 4.287238 ACTTTCTTCGCATGTTTTCGTT 57.713 36.364 0.00 0.00 0.00 3.85
4461 5454 7.719633 TGAACTAGTTTCTTCCTAGCATGTTTT 59.280 33.333 10.02 0.00 36.23 2.43
4495 5489 7.013655 ACCAGATTTCATACATATGTTGGCTTC 59.986 37.037 14.77 5.17 35.26 3.86
4577 5571 0.248825 CTGACAGATTCGAGAGCCGG 60.249 60.000 0.00 0.00 39.14 6.13
4625 5619 3.490155 GCATGAGAGATGATGAACTGTCG 59.510 47.826 0.00 0.00 30.61 4.35
4697 5691 1.345415 GGTGGGAACAAGACCTACGAA 59.655 52.381 0.00 0.00 46.06 3.85
4744 5738 3.195396 GCCCTCAAATGCTAATTCAACCA 59.805 43.478 0.00 0.00 0.00 3.67
4777 5771 4.379499 GCAGTAAAACAGTCTTACCCATGC 60.379 45.833 0.00 0.00 30.88 4.06
4855 5852 8.208718 TGACTAGTTGGCATTTGAATATGTAC 57.791 34.615 0.00 0.00 0.00 2.90
4866 5863 2.094130 TGAATATGTACGTTCCGTGGCA 60.094 45.455 0.00 0.00 41.39 4.92
4900 5898 5.931146 CACCTGATAGCAGAGATTGGTTATC 59.069 44.000 10.19 0.00 45.17 1.75
4965 5966 9.825972 TGAAAGACGATGAAACTCATTAATTTC 57.174 29.630 0.00 0.00 37.20 2.17
4979 5980 5.185635 TCATTAATTTCTTGCCCTTCACCAG 59.814 40.000 0.00 0.00 0.00 4.00
5024 6028 6.642950 GCATAAGCGACTGAATAACTGTATCT 59.357 38.462 0.00 0.00 0.00 1.98
5072 6076 7.719633 ACTGCAAGAAGATTAGTAAAAGGTGAA 59.280 33.333 0.00 0.00 37.43 3.18
5081 6085 9.965902 AGATTAGTAAAAGGTGAACATCTGAAT 57.034 29.630 0.00 0.00 0.00 2.57
5127 6131 1.670811 CGGTGAAACACTATGGGATGC 59.329 52.381 0.00 0.00 39.98 3.91
5209 6216 8.472683 TTTTACAGACATTTCAACAGTTTTGG 57.527 30.769 0.00 0.00 0.00 3.28
5370 6377 2.982130 CTCGTGCCCAGGTAGCTT 59.018 61.111 0.00 0.00 0.00 3.74
5406 6413 5.121811 TGGTAGATCAGGTAGTAGTCGTTC 58.878 45.833 0.00 0.00 0.00 3.95
5436 6443 2.285368 ATCCTGACGCCCCTGGAA 60.285 61.111 0.00 0.00 37.63 3.53
5438 6445 2.822643 ATCCTGACGCCCCTGGAAGA 62.823 60.000 0.00 0.00 37.63 2.87
5448 6455 1.609208 CCCTGGAAGACAACACAAGG 58.391 55.000 0.00 0.00 34.07 3.61
5458 6465 0.323725 CAACACAAGGGAGGGGATGG 60.324 60.000 0.00 0.00 0.00 3.51
5462 6469 0.995675 ACAAGGGAGGGGATGGATGG 60.996 60.000 0.00 0.00 0.00 3.51
5491 6509 3.948473 AGTCGCTCACATACTACACTCAT 59.052 43.478 0.00 0.00 0.00 2.90
5504 6522 5.579718 ACTACACTCATTCACGTATGCTAC 58.420 41.667 0.00 0.00 0.00 3.58
5522 6540 2.333389 ACGCTGAACTCTGAAGTACG 57.667 50.000 0.00 0.00 33.48 3.67
5535 6553 4.454847 TCTGAAGTACGGTAGTGAAGTCTG 59.545 45.833 0.00 0.00 0.00 3.51
5536 6554 4.139786 TGAAGTACGGTAGTGAAGTCTGT 58.860 43.478 0.00 0.00 0.00 3.41
5538 6556 2.818432 AGTACGGTAGTGAAGTCTGTGG 59.182 50.000 0.00 0.00 0.00 4.17
5539 6557 1.700955 ACGGTAGTGAAGTCTGTGGT 58.299 50.000 0.00 0.00 0.00 4.16
5540 6558 1.340248 ACGGTAGTGAAGTCTGTGGTG 59.660 52.381 0.00 0.00 0.00 4.17
5541 6559 1.611977 CGGTAGTGAAGTCTGTGGTGA 59.388 52.381 0.00 0.00 0.00 4.02
5542 6560 2.607282 CGGTAGTGAAGTCTGTGGTGAC 60.607 54.545 0.00 0.00 37.23 3.67
5544 6562 1.399714 AGTGAAGTCTGTGGTGACGA 58.600 50.000 0.00 0.00 41.47 4.20
5545 6563 1.338337 AGTGAAGTCTGTGGTGACGAG 59.662 52.381 0.00 0.00 41.47 4.18
5663 6684 4.087892 CGCTCCCCACCTGTCCTG 62.088 72.222 0.00 0.00 0.00 3.86
5714 6735 1.952133 TCAACGCGTTCCACTTCCG 60.952 57.895 23.92 8.51 0.00 4.30
5718 6739 2.975799 GCGTTCCACTTCCGGCAA 60.976 61.111 0.00 0.00 0.00 4.52
5723 6744 1.534163 GTTCCACTTCCGGCAAACTAC 59.466 52.381 0.00 0.00 0.00 2.73
5725 6746 1.141254 TCCACTTCCGGCAAACTACAA 59.859 47.619 0.00 0.00 0.00 2.41
5726 6747 2.159382 CCACTTCCGGCAAACTACAAT 58.841 47.619 0.00 0.00 0.00 2.71
5727 6748 2.556622 CCACTTCCGGCAAACTACAATT 59.443 45.455 0.00 0.00 0.00 2.32
5729 6750 4.226761 CACTTCCGGCAAACTACAATTTC 58.773 43.478 0.00 0.00 0.00 2.17
5730 6751 3.058501 ACTTCCGGCAAACTACAATTTCG 60.059 43.478 0.00 0.00 0.00 3.46
5732 6753 1.613270 CGGCAAACTACAATTTCGGC 58.387 50.000 0.00 0.00 0.00 5.54
5733 6754 1.068885 CGGCAAACTACAATTTCGGCA 60.069 47.619 0.00 0.00 0.00 5.69
5734 6755 2.605823 CGGCAAACTACAATTTCGGCAA 60.606 45.455 0.00 0.00 0.00 4.52
5735 6756 3.584834 GGCAAACTACAATTTCGGCAAT 58.415 40.909 0.00 0.00 0.00 3.56
5736 6757 3.993736 GGCAAACTACAATTTCGGCAATT 59.006 39.130 0.00 0.00 35.24 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.548075 GTGGTAGTCCATTCGAAATCTCTAAAA 59.452 37.037 0.00 0.00 46.20 1.52
2 3 7.039882 GTGGTAGTCCATTCGAAATCTCTAAA 58.960 38.462 0.00 0.00 46.20 1.85
3 4 6.153851 TGTGGTAGTCCATTCGAAATCTCTAA 59.846 38.462 0.00 0.00 46.20 2.10
4 5 5.655090 TGTGGTAGTCCATTCGAAATCTCTA 59.345 40.000 0.00 0.89 46.20 2.43
5 6 4.466370 TGTGGTAGTCCATTCGAAATCTCT 59.534 41.667 0.00 1.87 46.20 3.10
6 7 4.755411 TGTGGTAGTCCATTCGAAATCTC 58.245 43.478 0.00 0.00 46.20 2.75
7 8 4.819105 TGTGGTAGTCCATTCGAAATCT 57.181 40.909 0.00 1.14 46.20 2.40
8 9 6.046593 TGTATGTGGTAGTCCATTCGAAATC 58.953 40.000 0.00 0.00 46.20 2.17
9 10 5.984725 TGTATGTGGTAGTCCATTCGAAAT 58.015 37.500 0.00 0.00 46.20 2.17
11 12 4.707934 TCTGTATGTGGTAGTCCATTCGAA 59.292 41.667 0.00 0.00 46.20 3.71
12 13 4.274978 TCTGTATGTGGTAGTCCATTCGA 58.725 43.478 0.00 0.00 46.20 3.71
13 14 4.649088 TCTGTATGTGGTAGTCCATTCG 57.351 45.455 0.00 0.00 46.20 3.34
14 15 5.918608 ACATCTGTATGTGGTAGTCCATTC 58.081 41.667 0.00 0.00 44.79 2.67
15 16 5.957771 ACATCTGTATGTGGTAGTCCATT 57.042 39.130 0.00 0.00 44.79 3.16
16 17 8.901472 ATATACATCTGTATGTGGTAGTCCAT 57.099 34.615 12.10 0.00 45.99 3.41
17 18 9.462606 CTATATACATCTGTATGTGGTAGTCCA 57.537 37.037 12.10 0.00 45.99 4.02
18 19 9.682465 TCTATATACATCTGTATGTGGTAGTCC 57.318 37.037 12.10 0.00 45.99 3.85
56 57 6.148480 ACAGAGCAAAATGAGTGAATCTACAC 59.852 38.462 0.00 0.00 40.60 2.90
57 58 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
58 59 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
59 60 6.531594 CGTACAGAGCAAAATGAGTGAATCTA 59.468 38.462 0.00 0.00 0.00 1.98
60 61 5.349817 CGTACAGAGCAAAATGAGTGAATCT 59.650 40.000 0.00 0.00 0.00 2.40
61 62 5.120830 ACGTACAGAGCAAAATGAGTGAATC 59.879 40.000 0.00 0.00 0.00 2.52
62 63 4.997395 ACGTACAGAGCAAAATGAGTGAAT 59.003 37.500 0.00 0.00 0.00 2.57
63 64 4.377021 ACGTACAGAGCAAAATGAGTGAA 58.623 39.130 0.00 0.00 0.00 3.18
64 65 3.990092 ACGTACAGAGCAAAATGAGTGA 58.010 40.909 0.00 0.00 0.00 3.41
65 66 4.923871 ACTACGTACAGAGCAAAATGAGTG 59.076 41.667 0.00 0.00 0.00 3.51
66 67 5.135508 ACTACGTACAGAGCAAAATGAGT 57.864 39.130 0.00 0.00 0.00 3.41
67 68 5.061064 GTGACTACGTACAGAGCAAAATGAG 59.939 44.000 0.00 0.00 0.00 2.90
68 69 4.921515 GTGACTACGTACAGAGCAAAATGA 59.078 41.667 0.00 0.00 0.00 2.57
69 70 4.923871 AGTGACTACGTACAGAGCAAAATG 59.076 41.667 0.00 0.00 0.00 2.32
70 71 5.135508 AGTGACTACGTACAGAGCAAAAT 57.864 39.130 0.00 0.00 0.00 1.82
71 72 4.579454 AGTGACTACGTACAGAGCAAAA 57.421 40.909 0.00 0.00 0.00 2.44
72 73 4.202080 ACAAGTGACTACGTACAGAGCAAA 60.202 41.667 0.00 0.00 0.00 3.68
73 74 3.317149 ACAAGTGACTACGTACAGAGCAA 59.683 43.478 0.00 0.00 0.00 3.91
74 75 2.882761 ACAAGTGACTACGTACAGAGCA 59.117 45.455 0.00 0.00 0.00 4.26
75 76 3.555917 ACAAGTGACTACGTACAGAGC 57.444 47.619 0.00 0.00 0.00 4.09
76 77 5.104562 TCAACAAGTGACTACGTACAGAG 57.895 43.478 0.00 0.00 0.00 3.35
77 78 5.503662 TTCAACAAGTGACTACGTACAGA 57.496 39.130 0.00 0.00 35.39 3.41
78 79 6.641314 AGATTTCAACAAGTGACTACGTACAG 59.359 38.462 0.00 0.00 35.39 2.74
79 80 6.509656 AGATTTCAACAAGTGACTACGTACA 58.490 36.000 0.00 0.00 35.39 2.90
80 81 6.862090 AGAGATTTCAACAAGTGACTACGTAC 59.138 38.462 0.00 0.00 35.39 3.67
81 82 6.978338 AGAGATTTCAACAAGTGACTACGTA 58.022 36.000 0.00 0.00 35.39 3.57
82 83 5.844004 AGAGATTTCAACAAGTGACTACGT 58.156 37.500 0.00 0.00 35.39 3.57
83 84 7.306213 TCTAGAGATTTCAACAAGTGACTACG 58.694 38.462 0.00 0.00 35.39 3.51
84 85 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
85 86 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
86 87 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
87 88 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
88 89 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
89 90 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
90 91 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
103 104 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
104 105 8.827677 CCCGTTCCTAAATATTTGTCTTTCTAG 58.172 37.037 11.05 0.00 0.00 2.43
105 106 7.771826 CCCCGTTCCTAAATATTTGTCTTTCTA 59.228 37.037 11.05 0.00 0.00 2.10
106 107 6.602009 CCCCGTTCCTAAATATTTGTCTTTCT 59.398 38.462 11.05 0.00 0.00 2.52
107 108 6.183360 CCCCCGTTCCTAAATATTTGTCTTTC 60.183 42.308 11.05 0.00 0.00 2.62
108 109 5.655090 CCCCCGTTCCTAAATATTTGTCTTT 59.345 40.000 11.05 0.00 0.00 2.52
109 110 5.198207 CCCCCGTTCCTAAATATTTGTCTT 58.802 41.667 11.05 0.00 0.00 3.01
110 111 4.788679 CCCCCGTTCCTAAATATTTGTCT 58.211 43.478 11.05 0.00 0.00 3.41
129 130 2.507407 TGACTGCATTTTACTCCCCC 57.493 50.000 0.00 0.00 0.00 5.40
130 131 4.864704 TTTTGACTGCATTTTACTCCCC 57.135 40.909 0.00 0.00 0.00 4.81
159 160 5.868801 GCCTTGCATTGCATTTTAGTTTCTA 59.131 36.000 12.95 0.00 38.76 2.10
161 162 4.451774 TGCCTTGCATTGCATTTTAGTTTC 59.548 37.500 12.95 0.00 38.76 2.78
176 177 4.599041 AGTGGAGTATTATTTGCCTTGCA 58.401 39.130 0.00 0.00 36.47 4.08
275 282 1.443828 GAGGAAGGATGAGCGGACC 59.556 63.158 0.00 0.00 0.00 4.46
279 286 0.539051 AGTTGGAGGAAGGATGAGCG 59.461 55.000 0.00 0.00 0.00 5.03
282 289 2.840651 GGAGAAGTTGGAGGAAGGATGA 59.159 50.000 0.00 0.00 0.00 2.92
286 293 1.557371 GAGGGAGAAGTTGGAGGAAGG 59.443 57.143 0.00 0.00 0.00 3.46
328 357 6.371595 AAAATCAGATATGGGGCACAAAAA 57.628 33.333 0.00 0.00 0.00 1.94
335 364 4.023193 CGGTGTAAAAATCAGATATGGGGC 60.023 45.833 0.00 0.00 0.00 5.80
337 366 6.693315 AACGGTGTAAAAATCAGATATGGG 57.307 37.500 0.00 0.00 0.00 4.00
410 440 6.998968 TGTCTAACCAAAGAAAACGGTTTA 57.001 33.333 6.53 0.00 40.08 2.01
411 441 5.900865 TGTCTAACCAAAGAAAACGGTTT 57.099 34.783 0.00 0.00 40.08 3.27
430 460 9.787532 TGATAAGCACTTAAAGCATTTATTGTC 57.212 29.630 2.81 0.00 40.76 3.18
504 535 7.716799 ATCAGCCTATATGTTTGTCCAAAAA 57.283 32.000 0.00 0.00 31.33 1.94
505 536 8.815565 TTATCAGCCTATATGTTTGTCCAAAA 57.184 30.769 0.00 0.00 31.33 2.44
506 537 8.815565 TTTATCAGCCTATATGTTTGTCCAAA 57.184 30.769 0.00 0.00 0.00 3.28
507 538 8.849168 CATTTATCAGCCTATATGTTTGTCCAA 58.151 33.333 0.00 0.00 0.00 3.53
508 539 8.217111 TCATTTATCAGCCTATATGTTTGTCCA 58.783 33.333 0.00 0.00 0.00 4.02
509 540 8.507249 GTCATTTATCAGCCTATATGTTTGTCC 58.493 37.037 0.00 0.00 0.00 4.02
510 541 8.223769 CGTCATTTATCAGCCTATATGTTTGTC 58.776 37.037 0.00 0.00 0.00 3.18
511 542 7.173218 CCGTCATTTATCAGCCTATATGTTTGT 59.827 37.037 0.00 0.00 0.00 2.83
513 544 6.149474 GCCGTCATTTATCAGCCTATATGTTT 59.851 38.462 0.00 0.00 0.00 2.83
514 545 5.643777 GCCGTCATTTATCAGCCTATATGTT 59.356 40.000 0.00 0.00 0.00 2.71
515 546 5.178797 GCCGTCATTTATCAGCCTATATGT 58.821 41.667 0.00 0.00 0.00 2.29
516 547 4.572389 GGCCGTCATTTATCAGCCTATATG 59.428 45.833 0.00 0.00 37.42 1.78
517 548 4.770795 GGCCGTCATTTATCAGCCTATAT 58.229 43.478 0.00 0.00 37.42 0.86
518 549 4.202245 GGCCGTCATTTATCAGCCTATA 57.798 45.455 0.00 0.00 37.42 1.31
520 551 2.543777 GGCCGTCATTTATCAGCCTA 57.456 50.000 0.00 0.00 37.42 3.93
522 553 2.543777 TAGGCCGTCATTTATCAGCC 57.456 50.000 0.00 0.00 40.79 4.85
523 554 3.467803 AGTTAGGCCGTCATTTATCAGC 58.532 45.455 0.00 0.00 0.00 4.26
524 555 5.844004 AGTAGTTAGGCCGTCATTTATCAG 58.156 41.667 0.00 0.00 0.00 2.90
525 556 5.864418 AGTAGTTAGGCCGTCATTTATCA 57.136 39.130 0.00 0.00 0.00 2.15
526 557 7.211966 TCTAGTAGTTAGGCCGTCATTTATC 57.788 40.000 0.00 0.00 0.00 1.75
528 559 7.592885 ATTCTAGTAGTTAGGCCGTCATTTA 57.407 36.000 0.00 0.00 0.00 1.40
538 571 7.811713 GGGTGCGTAAATATTCTAGTAGTTAGG 59.188 40.741 0.00 0.00 0.00 2.69
550 584 5.220557 GTTGTAACGGGTGCGTAAATATT 57.779 39.130 0.00 0.00 0.00 1.28
569 603 9.908152 TCACTAGATATAATTCACCATACGTTG 57.092 33.333 0.00 0.00 0.00 4.10
605 639 8.349983 GCTAAACTTCTTTTCTTCCATACAACA 58.650 33.333 0.00 0.00 0.00 3.33
606 640 8.349983 TGCTAAACTTCTTTTCTTCCATACAAC 58.650 33.333 0.00 0.00 0.00 3.32
607 641 8.349983 GTGCTAAACTTCTTTTCTTCCATACAA 58.650 33.333 0.00 0.00 0.00 2.41
609 643 7.015877 CGTGCTAAACTTCTTTTCTTCCATAC 58.984 38.462 0.00 0.00 0.00 2.39
622 656 2.349532 GGCTGACAACGTGCTAAACTTC 60.350 50.000 0.00 0.00 0.00 3.01
634 668 1.740025 GCTGACCATTAGGCTGACAAC 59.260 52.381 0.00 0.00 39.06 3.32
642 676 2.628178 TCAGGATACGCTGACCATTAGG 59.372 50.000 0.00 0.00 46.39 2.69
643 677 4.322080 TTCAGGATACGCTGACCATTAG 57.678 45.455 0.00 0.00 46.39 1.73
648 683 4.883083 TCATAATTCAGGATACGCTGACC 58.117 43.478 0.00 0.00 46.39 4.02
685 720 5.270083 TCAAACTATGTTTGAACAGCGTTG 58.730 37.500 19.44 0.00 43.04 4.10
686 721 5.493133 TCAAACTATGTTTGAACAGCGTT 57.507 34.783 19.44 5.50 43.04 4.84
718 753 2.029828 TGTTTGCAGGTTTTCGTGTTGT 60.030 40.909 0.00 0.00 37.90 3.32
719 754 2.600731 TGTTTGCAGGTTTTCGTGTTG 58.399 42.857 0.00 0.00 37.90 3.33
888 958 4.778143 AGACGCATTGCCCGACCC 62.778 66.667 2.41 0.00 0.00 4.46
1037 1107 2.922950 CGGGGAAGGAACGTGACGA 61.923 63.158 13.70 0.00 0.00 4.20
1287 1357 3.374402 CAGACCTGGGAGTCGCGT 61.374 66.667 5.77 0.00 41.83 6.01
1312 1382 2.819595 GCCAATCGAGCCAGCGAA 60.820 61.111 0.00 0.00 44.22 4.70
1376 1446 3.388841 AGGTACACCTGGCCGAAG 58.611 61.111 0.00 0.00 46.55 3.79
1392 1462 1.525995 AAACGGTGCTCCCACACAG 60.526 57.895 0.00 0.00 43.88 3.66
1394 1464 3.030652 CAAACGGTGCTCCCACAC 58.969 61.111 0.00 0.00 43.88 3.82
1411 1481 7.201435 CCCGAAATTTTACAAATCTTAGCAAGC 60.201 37.037 0.00 0.00 0.00 4.01
1424 1494 8.402472 CAAGCTAATACATCCCGAAATTTTACA 58.598 33.333 0.00 0.00 0.00 2.41
1425 1495 7.378728 GCAAGCTAATACATCCCGAAATTTTAC 59.621 37.037 0.00 0.00 0.00 2.01
1434 1504 2.838736 ACTGCAAGCTAATACATCCCG 58.161 47.619 0.00 0.00 37.60 5.14
1457 1527 6.455647 TGAGTTAAAGCAGTATATCCGGATG 58.544 40.000 27.55 12.59 0.00 3.51
1459 1529 6.665992 ATGAGTTAAAGCAGTATATCCGGA 57.334 37.500 6.61 6.61 0.00 5.14
1573 2132 2.683867 ACACTAGGAGATCGTAGCACAC 59.316 50.000 8.99 0.00 37.73 3.82
1578 2137 6.460781 AGTAGATGACACTAGGAGATCGTAG 58.539 44.000 7.78 7.78 39.48 3.51
1580 2139 5.298989 AGTAGATGACACTAGGAGATCGT 57.701 43.478 0.00 0.00 0.00 3.73
1582 2141 7.446769 TCTGTAGTAGATGACACTAGGAGATC 58.553 42.308 0.00 0.00 0.00 2.75
1584 2143 6.809976 TCTGTAGTAGATGACACTAGGAGA 57.190 41.667 0.00 0.00 0.00 3.71
1593 2152 8.247562 AGTTCATGACTTTCTGTAGTAGATGAC 58.752 37.037 0.00 0.00 33.92 3.06
1696 2529 5.200483 CAAACTAAAAGGGGCCATGAGATA 58.800 41.667 4.39 0.00 0.00 1.98
1802 2636 4.226761 CAAGTGGGATTTCGTAAGCAAAC 58.773 43.478 0.00 0.00 37.18 2.93
1897 2737 7.290813 AGAGAAGTTCCACAAGAAAAGGTAAT 58.709 34.615 0.00 0.00 35.85 1.89
2092 2934 9.927668 TGGAAAAGAATTATTGTTTCAAGATCC 57.072 29.630 0.59 4.84 32.72 3.36
2190 3116 3.701040 CCAGTAACAAATCCCCCAATGAG 59.299 47.826 0.00 0.00 0.00 2.90
2281 3208 6.479990 CGATCAGTTGCATCTTATAACCTTCA 59.520 38.462 0.00 0.00 0.00 3.02
2286 3213 6.477033 ACAGTCGATCAGTTGCATCTTATAAC 59.523 38.462 0.00 0.00 0.00 1.89
2294 3221 3.928992 CAGTTACAGTCGATCAGTTGCAT 59.071 43.478 0.00 0.00 0.00 3.96
2326 3253 8.513774 GCAAACCATCATTTTAACATTTGGAAT 58.486 29.630 7.15 0.00 0.00 3.01
2486 3414 4.551702 TCACAGCTGGCTATGAGTTTAA 57.448 40.909 19.93 0.00 0.00 1.52
2497 3425 8.190784 AGTACAAATATAAATTTCACAGCTGGC 58.809 33.333 19.93 0.00 32.87 4.85
2553 3481 6.864342 TCTTAGTTAACAGTCATGCTCCTAC 58.136 40.000 8.61 0.00 0.00 3.18
2650 3579 2.183679 CCTCCCTCAGTATCCCTATGC 58.816 57.143 0.00 0.00 0.00 3.14
2691 3620 5.351189 AGCAACACAAAAACAATTCAGGAAC 59.649 36.000 0.00 0.00 0.00 3.62
2706 3635 4.884458 TTCGAACATTGTAGCAACACAA 57.116 36.364 0.00 1.69 42.32 3.33
2707 3636 4.884458 TTTCGAACATTGTAGCAACACA 57.116 36.364 0.00 0.00 34.61 3.72
2708 3637 7.748683 TGATAATTTCGAACATTGTAGCAACAC 59.251 33.333 0.00 0.00 34.61 3.32
2709 3638 7.811653 TGATAATTTCGAACATTGTAGCAACA 58.188 30.769 0.00 0.00 0.00 3.33
2710 3639 8.575454 GTTGATAATTTCGAACATTGTAGCAAC 58.425 33.333 0.00 7.57 0.00 4.17
2711 3640 8.511321 AGTTGATAATTTCGAACATTGTAGCAA 58.489 29.630 0.00 0.00 0.00 3.91
2712 3641 8.039603 AGTTGATAATTTCGAACATTGTAGCA 57.960 30.769 0.00 0.00 0.00 3.49
2713 3642 8.895932 AAGTTGATAATTTCGAACATTGTAGC 57.104 30.769 0.00 0.00 0.00 3.58
2719 3648 9.289303 GCATGTTAAGTTGATAATTTCGAACAT 57.711 29.630 0.00 0.00 35.86 2.71
2720 3649 7.753132 GGCATGTTAAGTTGATAATTTCGAACA 59.247 33.333 0.00 0.00 0.00 3.18
2721 3650 7.220108 GGGCATGTTAAGTTGATAATTTCGAAC 59.780 37.037 0.00 0.00 0.00 3.95
2722 3651 7.254852 GGGCATGTTAAGTTGATAATTTCGAA 58.745 34.615 0.00 0.00 0.00 3.71
2723 3652 6.183360 GGGGCATGTTAAGTTGATAATTTCGA 60.183 38.462 0.00 0.00 0.00 3.71
2724 3653 5.977129 GGGGCATGTTAAGTTGATAATTTCG 59.023 40.000 0.00 0.00 0.00 3.46
2725 3654 6.098266 AGGGGGCATGTTAAGTTGATAATTTC 59.902 38.462 0.00 0.00 0.00 2.17
2726 3655 5.963865 AGGGGGCATGTTAAGTTGATAATTT 59.036 36.000 0.00 0.00 0.00 1.82
2727 3656 5.528337 AGGGGGCATGTTAAGTTGATAATT 58.472 37.500 0.00 0.00 0.00 1.40
2728 3657 5.142806 AGGGGGCATGTTAAGTTGATAAT 57.857 39.130 0.00 0.00 0.00 1.28
2729 3658 4.601406 AGGGGGCATGTTAAGTTGATAA 57.399 40.909 0.00 0.00 0.00 1.75
2730 3659 4.601406 AAGGGGGCATGTTAAGTTGATA 57.399 40.909 0.00 0.00 0.00 2.15
2731 3660 3.473113 AAGGGGGCATGTTAAGTTGAT 57.527 42.857 0.00 0.00 0.00 2.57
2732 3661 2.990740 AAGGGGGCATGTTAAGTTGA 57.009 45.000 0.00 0.00 0.00 3.18
2733 3662 3.697166 AGTAAGGGGGCATGTTAAGTTG 58.303 45.455 0.00 0.00 0.00 3.16
2734 3663 4.341487 GAAGTAAGGGGGCATGTTAAGTT 58.659 43.478 0.00 0.00 0.00 2.66
2735 3664 3.308904 GGAAGTAAGGGGGCATGTTAAGT 60.309 47.826 0.00 0.00 0.00 2.24
2736 3665 3.053619 AGGAAGTAAGGGGGCATGTTAAG 60.054 47.826 0.00 0.00 0.00 1.85
2737 3666 2.923629 AGGAAGTAAGGGGGCATGTTAA 59.076 45.455 0.00 0.00 0.00 2.01
2738 3667 2.568979 AGGAAGTAAGGGGGCATGTTA 58.431 47.619 0.00 0.00 0.00 2.41
2739 3668 1.382914 AGGAAGTAAGGGGGCATGTT 58.617 50.000 0.00 0.00 0.00 2.71
2740 3669 1.285078 GAAGGAAGTAAGGGGGCATGT 59.715 52.381 0.00 0.00 0.00 3.21
2741 3670 1.747206 CGAAGGAAGTAAGGGGGCATG 60.747 57.143 0.00 0.00 0.00 4.06
2742 3671 0.546598 CGAAGGAAGTAAGGGGGCAT 59.453 55.000 0.00 0.00 0.00 4.40
2743 3672 0.838987 ACGAAGGAAGTAAGGGGGCA 60.839 55.000 0.00 0.00 0.00 5.36
2744 3673 0.392595 CACGAAGGAAGTAAGGGGGC 60.393 60.000 0.00 0.00 0.00 5.80
2745 3674 1.066358 GTCACGAAGGAAGTAAGGGGG 60.066 57.143 0.00 0.00 0.00 5.40
2746 3675 1.066358 GGTCACGAAGGAAGTAAGGGG 60.066 57.143 0.00 0.00 0.00 4.79
2747 3676 1.900486 AGGTCACGAAGGAAGTAAGGG 59.100 52.381 0.00 0.00 0.00 3.95
2748 3677 2.094130 GGAGGTCACGAAGGAAGTAAGG 60.094 54.545 0.00 0.00 0.00 2.69
2749 3678 2.094130 GGGAGGTCACGAAGGAAGTAAG 60.094 54.545 0.00 0.00 0.00 2.34
2750 3679 1.897802 GGGAGGTCACGAAGGAAGTAA 59.102 52.381 0.00 0.00 0.00 2.24
2751 3680 1.203087 TGGGAGGTCACGAAGGAAGTA 60.203 52.381 0.00 0.00 0.00 2.24
2752 3681 0.471211 TGGGAGGTCACGAAGGAAGT 60.471 55.000 0.00 0.00 0.00 3.01
2753 3682 0.037232 GTGGGAGGTCACGAAGGAAG 60.037 60.000 0.00 0.00 0.00 3.46
2754 3683 0.471211 AGTGGGAGGTCACGAAGGAA 60.471 55.000 0.00 0.00 42.10 3.36
2755 3684 0.406750 TAGTGGGAGGTCACGAAGGA 59.593 55.000 0.00 0.00 42.10 3.36
2756 3685 0.531200 GTAGTGGGAGGTCACGAAGG 59.469 60.000 0.00 0.00 42.10 3.46
2757 3686 1.546961 AGTAGTGGGAGGTCACGAAG 58.453 55.000 0.00 0.00 42.10 3.79
2758 3687 1.891150 GAAGTAGTGGGAGGTCACGAA 59.109 52.381 0.00 0.00 42.10 3.85
2759 3688 1.202964 TGAAGTAGTGGGAGGTCACGA 60.203 52.381 0.00 0.00 42.10 4.35
2760 3689 1.254026 TGAAGTAGTGGGAGGTCACG 58.746 55.000 0.00 0.00 42.10 4.35
2761 3690 3.100671 AGATGAAGTAGTGGGAGGTCAC 58.899 50.000 0.00 0.00 37.89 3.67
2762 3691 3.474798 AGATGAAGTAGTGGGAGGTCA 57.525 47.619 0.00 0.00 0.00 4.02
2763 3692 3.637694 GGTAGATGAAGTAGTGGGAGGTC 59.362 52.174 0.00 0.00 0.00 3.85
2764 3693 3.644335 GGTAGATGAAGTAGTGGGAGGT 58.356 50.000 0.00 0.00 0.00 3.85
2765 3694 2.623889 CGGTAGATGAAGTAGTGGGAGG 59.376 54.545 0.00 0.00 0.00 4.30
2766 3695 3.552875 TCGGTAGATGAAGTAGTGGGAG 58.447 50.000 0.00 0.00 0.00 4.30
2767 3696 3.657398 TCGGTAGATGAAGTAGTGGGA 57.343 47.619 0.00 0.00 0.00 4.37
2768 3697 4.730949 TTTCGGTAGATGAAGTAGTGGG 57.269 45.455 0.00 0.00 0.00 4.61
2769 3698 5.902681 TCATTTCGGTAGATGAAGTAGTGG 58.097 41.667 0.00 0.00 29.82 4.00
2770 3699 9.186323 CTAATCATTTCGGTAGATGAAGTAGTG 57.814 37.037 0.00 0.00 36.03 2.74
2771 3700 8.361139 CCTAATCATTTCGGTAGATGAAGTAGT 58.639 37.037 0.00 0.00 36.03 2.73
2772 3701 7.329717 GCCTAATCATTTCGGTAGATGAAGTAG 59.670 40.741 0.00 0.00 36.03 2.57
2773 3702 7.152645 GCCTAATCATTTCGGTAGATGAAGTA 58.847 38.462 0.00 0.00 36.03 2.24
2774 3703 5.992217 GCCTAATCATTTCGGTAGATGAAGT 59.008 40.000 0.00 0.00 36.03 3.01
2775 3704 5.991606 TGCCTAATCATTTCGGTAGATGAAG 59.008 40.000 0.00 0.00 36.03 3.02
2776 3705 5.924356 TGCCTAATCATTTCGGTAGATGAA 58.076 37.500 0.00 0.00 36.03 2.57
2777 3706 5.304357 TCTGCCTAATCATTTCGGTAGATGA 59.696 40.000 3.14 0.00 35.45 2.92
2778 3707 5.541845 TCTGCCTAATCATTTCGGTAGATG 58.458 41.667 3.14 0.00 35.45 2.90
2779 3708 5.808366 TCTGCCTAATCATTTCGGTAGAT 57.192 39.130 3.14 0.00 35.45 1.98
2780 3709 5.540337 AGATCTGCCTAATCATTTCGGTAGA 59.460 40.000 8.12 8.12 41.45 2.59
2781 3710 5.788450 AGATCTGCCTAATCATTTCGGTAG 58.212 41.667 0.00 0.00 33.41 3.18
2782 3711 5.564848 CGAGATCTGCCTAATCATTTCGGTA 60.565 44.000 0.00 0.00 0.00 4.02
2783 3712 4.636249 GAGATCTGCCTAATCATTTCGGT 58.364 43.478 0.00 0.00 0.00 4.69
2784 3713 3.677121 CGAGATCTGCCTAATCATTTCGG 59.323 47.826 0.00 0.00 0.00 4.30
2785 3714 4.302455 ACGAGATCTGCCTAATCATTTCG 58.698 43.478 0.00 0.00 0.00 3.46
2786 3715 6.610741 AAACGAGATCTGCCTAATCATTTC 57.389 37.500 0.00 0.00 0.00 2.17
2787 3716 7.396540 AAAAACGAGATCTGCCTAATCATTT 57.603 32.000 0.00 0.00 0.00 2.32
2816 3745 3.887716 AGGATCATGAGCAGGTTTAATGC 59.112 43.478 13.85 0.00 44.18 3.56
2817 3746 6.461110 AAAGGATCATGAGCAGGTTTAATG 57.539 37.500 13.85 0.00 0.00 1.90
2818 3747 7.577303 TCTAAAGGATCATGAGCAGGTTTAAT 58.423 34.615 13.85 0.00 0.00 1.40
2819 3748 6.957631 TCTAAAGGATCATGAGCAGGTTTAA 58.042 36.000 13.85 3.05 0.00 1.52
2820 3749 6.156949 ACTCTAAAGGATCATGAGCAGGTTTA 59.843 38.462 13.85 11.61 0.00 2.01
2821 3750 5.045286 ACTCTAAAGGATCATGAGCAGGTTT 60.045 40.000 13.85 11.11 0.00 3.27
2822 3751 4.472833 ACTCTAAAGGATCATGAGCAGGTT 59.527 41.667 13.85 5.84 0.00 3.50
2823 3752 4.036518 ACTCTAAAGGATCATGAGCAGGT 58.963 43.478 13.85 0.00 0.00 4.00
2824 3753 4.344679 AGACTCTAAAGGATCATGAGCAGG 59.655 45.833 13.85 0.00 0.00 4.85
2825 3754 5.163426 ACAGACTCTAAAGGATCATGAGCAG 60.163 44.000 13.85 2.72 0.00 4.24
2826 3755 4.713814 ACAGACTCTAAAGGATCATGAGCA 59.286 41.667 13.85 0.00 0.00 4.26
2827 3756 5.275067 ACAGACTCTAAAGGATCATGAGC 57.725 43.478 1.26 1.26 0.00 4.26
2828 3757 7.581213 ACTACAGACTCTAAAGGATCATGAG 57.419 40.000 0.09 0.00 0.00 2.90
2829 3758 7.962995 AACTACAGACTCTAAAGGATCATGA 57.037 36.000 0.00 0.00 0.00 3.07
2830 3759 7.865385 GCTAACTACAGACTCTAAAGGATCATG 59.135 40.741 0.00 0.00 0.00 3.07
2831 3760 7.782644 AGCTAACTACAGACTCTAAAGGATCAT 59.217 37.037 0.00 0.00 0.00 2.45
2832 3761 7.120051 AGCTAACTACAGACTCTAAAGGATCA 58.880 38.462 0.00 0.00 0.00 2.92
2833 3762 7.576861 AGCTAACTACAGACTCTAAAGGATC 57.423 40.000 0.00 0.00 0.00 3.36
2834 3763 7.964666 AAGCTAACTACAGACTCTAAAGGAT 57.035 36.000 0.00 0.00 0.00 3.24
2835 3764 7.778185 AAAGCTAACTACAGACTCTAAAGGA 57.222 36.000 0.00 0.00 0.00 3.36
2836 3765 9.356433 GTTAAAGCTAACTACAGACTCTAAAGG 57.644 37.037 0.00 0.00 35.48 3.11
2837 3766 9.063739 CGTTAAAGCTAACTACAGACTCTAAAG 57.936 37.037 0.00 0.00 36.09 1.85
2838 3767 8.571336 ACGTTAAAGCTAACTACAGACTCTAAA 58.429 33.333 0.00 0.00 36.09 1.85
2863 3792 2.256117 AAGCCAACCCGCATCTATAC 57.744 50.000 0.00 0.00 0.00 1.47
2868 3797 1.202405 CCAATTAAGCCAACCCGCATC 60.202 52.381 0.00 0.00 0.00 3.91
2875 3806 1.974957 ACCAACCCCAATTAAGCCAAC 59.025 47.619 0.00 0.00 0.00 3.77
2886 3817 2.324541 CATCTTTCCAAACCAACCCCA 58.675 47.619 0.00 0.00 0.00 4.96
2889 3820 2.365293 AGTGCATCTTTCCAAACCAACC 59.635 45.455 0.00 0.00 0.00 3.77
2900 3831 3.424703 AGCCAACATACAGTGCATCTTT 58.575 40.909 0.00 0.00 0.00 2.52
2968 3899 7.526918 CCTATATTACCCCTGGAAGAAACATT 58.473 38.462 0.00 0.00 34.07 2.71
3031 3980 6.868339 CCTTATTAACTTGCAAACCTTTGAGG 59.132 38.462 0.00 0.22 40.55 3.86
3074 4023 8.481492 AAATTGATGGCAGATACCAATTCATA 57.519 30.769 11.87 0.00 44.65 2.15
3084 4033 6.317140 GTGTCTCAGAAAATTGATGGCAGATA 59.683 38.462 0.00 0.00 0.00 1.98
3090 4039 5.163581 GGGATGTGTCTCAGAAAATTGATGG 60.164 44.000 0.00 0.00 0.00 3.51
3114 4063 6.311723 ACAAGCGAATAAAATAAGGACAACG 58.688 36.000 0.00 0.00 0.00 4.10
3135 4088 7.209471 AGACAAACAGTAGACAAACAAACAA 57.791 32.000 0.00 0.00 0.00 2.83
3252 4205 1.145571 ACTTGGGGGTTTGCTCTGTA 58.854 50.000 0.00 0.00 0.00 2.74
3360 4313 0.527113 CCATCGCCTGTTGAAATGCA 59.473 50.000 0.00 0.00 0.00 3.96
3449 4402 7.923414 AGTTTAATAAGTCCTTAAGCAGTGG 57.077 36.000 0.00 0.00 0.00 4.00
3766 4720 0.950555 GCGCATCACAGACCAACAGA 60.951 55.000 0.30 0.00 0.00 3.41
3777 4731 1.731433 ATGGCTTCCATGCGCATCAC 61.731 55.000 22.51 7.97 43.39 3.06
3784 4738 7.658575 ACATTTAATCATTTATGGCTTCCATGC 59.341 33.333 8.52 0.00 44.84 4.06
3830 4784 6.992063 AATATTGAGCACACTAAAGACTGG 57.008 37.500 0.00 0.00 0.00 4.00
3870 4824 5.413499 ACAGCATGATAAAAACATGGCTTC 58.587 37.500 0.00 0.00 43.39 3.86
3873 4827 6.135290 TCTACAGCATGATAAAAACATGGC 57.865 37.500 0.00 0.00 43.39 4.40
3887 4841 5.590259 ACAGTTTTCAACACTTCTACAGCAT 59.410 36.000 0.00 0.00 0.00 3.79
3913 4867 6.846350 GCATCAGCTAAAGTTCTTGTTATGT 58.154 36.000 0.00 0.00 37.91 2.29
3932 4886 0.459585 GCCGGTACTTCGAAGCATCA 60.460 55.000 24.86 5.22 0.00 3.07
3941 4895 1.146263 CATCCTGGGCCGGTACTTC 59.854 63.158 12.30 0.00 0.00 3.01
4268 5256 6.921857 TGTCCAAAGAAAACTAGAAGTACTCG 59.078 38.462 0.00 0.00 0.00 4.18
4275 5263 6.411376 TCACACTGTCCAAAGAAAACTAGAA 58.589 36.000 0.00 0.00 0.00 2.10
4305 5293 4.323417 TCTTGGTGGTTACTATGCACAAG 58.677 43.478 0.00 0.00 36.37 3.16
4343 5331 6.952773 ACTTTAAAGCATTACACCACTTCA 57.047 33.333 15.24 0.00 0.00 3.02
4402 5393 4.668289 ACGAAAACATGCGAAGAAAGTTT 58.332 34.783 0.00 0.00 34.19 2.66
4586 5580 1.613630 GCCCCTCCACTTCTCTGGA 60.614 63.158 0.00 0.00 38.05 3.86
4625 5619 1.032114 CAGGGATGCCGGTTTCCTTC 61.032 60.000 20.03 8.31 32.34 3.46
4697 5691 2.439156 GCCATTTCCAGCGCTCCT 60.439 61.111 7.13 0.00 0.00 3.69
4721 5715 3.438360 GTTGAATTAGCATTTGAGGGCG 58.562 45.455 0.00 0.00 34.54 6.13
4744 5738 5.072040 ACTGTTTTACTGCTTGTTGCTTT 57.928 34.783 0.00 0.00 43.37 3.51
4777 5771 5.403766 GCATATGAACCTCAATCAGTCGTAG 59.596 44.000 6.97 0.00 0.00 3.51
4866 5863 6.100279 TCTCTGCTATCAGGTGGATGTTTTAT 59.900 38.462 0.00 0.00 40.69 1.40
4900 5898 4.322080 TGTTCAGCCTCATACGGATAAG 57.678 45.455 0.00 0.00 0.00 1.73
4965 5966 1.338020 GAAACACTGGTGAAGGGCAAG 59.662 52.381 7.78 0.00 29.26 4.01
5024 6028 5.476599 AGTTGCCAAACTGCAGATAATGTAA 59.523 36.000 23.35 7.50 45.12 2.41
5072 6076 7.041721 TCGTCTGCAAATTACTATTCAGATGT 58.958 34.615 0.00 0.00 35.34 3.06
5081 6085 7.219535 GTCGTATTCTTCGTCTGCAAATTACTA 59.780 37.037 0.00 0.00 0.00 1.82
5082 6086 6.034683 GTCGTATTCTTCGTCTGCAAATTACT 59.965 38.462 0.00 0.00 0.00 2.24
5090 6094 1.189403 CCGTCGTATTCTTCGTCTGC 58.811 55.000 0.00 0.00 0.00 4.26
5127 6131 6.054295 AGGTTGTATCTAGTCTACGTACAGG 58.946 44.000 0.00 0.00 0.00 4.00
5209 6216 2.355481 ACCGCGTCGTTCAGAACC 60.355 61.111 4.92 0.00 0.00 3.62
5250 6257 0.176680 ACCTGGAGACTGCTTATGCG 59.823 55.000 0.00 0.00 43.34 4.73
5370 6377 1.860641 TCTACCAAGGCGAGATCCAA 58.139 50.000 0.00 0.00 0.00 3.53
5406 6413 0.104777 TCAGGATCATCAGGGAGGGG 60.105 60.000 0.00 0.00 0.00 4.79
5436 6443 0.401395 TCCCCTCCCTTGTGTTGTCT 60.401 55.000 0.00 0.00 0.00 3.41
5438 6445 0.405585 CATCCCCTCCCTTGTGTTGT 59.594 55.000 0.00 0.00 0.00 3.32
5448 6455 2.074113 GAAGGCCATCCATCCCCTCC 62.074 65.000 5.01 0.00 33.74 4.30
5458 6465 1.590259 GAGCGACTCGAAGGCCATC 60.590 63.158 5.01 0.00 0.00 3.51
5462 6469 0.100682 TATGTGAGCGACTCGAAGGC 59.899 55.000 1.63 0.00 32.35 4.35
5504 6522 1.068472 ACCGTACTTCAGAGTTCAGCG 60.068 52.381 0.00 0.00 37.33 5.18
5522 6540 2.607282 CGTCACCACAGACTTCACTACC 60.607 54.545 0.00 0.00 36.38 3.18
5535 6553 2.609737 CCTGTAAGTTCCTCGTCACCAC 60.610 54.545 0.00 0.00 0.00 4.16
5536 6554 1.616865 CCTGTAAGTTCCTCGTCACCA 59.383 52.381 0.00 0.00 0.00 4.17
5538 6556 1.672145 GGCCTGTAAGTTCCTCGTCAC 60.672 57.143 0.00 0.00 0.00 3.67
5539 6557 0.606604 GGCCTGTAAGTTCCTCGTCA 59.393 55.000 0.00 0.00 0.00 4.35
5540 6558 0.458025 CGGCCTGTAAGTTCCTCGTC 60.458 60.000 0.00 0.00 0.00 4.20
5541 6559 1.183676 ACGGCCTGTAAGTTCCTCGT 61.184 55.000 0.00 0.00 0.00 4.18
5542 6560 0.813184 TACGGCCTGTAAGTTCCTCG 59.187 55.000 0.00 0.00 0.00 4.63
5544 6562 1.407979 CGATACGGCCTGTAAGTTCCT 59.592 52.381 0.00 0.00 36.44 3.36
5545 6563 1.537562 CCGATACGGCCTGTAAGTTCC 60.538 57.143 0.00 0.00 41.17 3.62
5714 6735 2.715737 TGCCGAAATTGTAGTTTGCC 57.284 45.000 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.