Multiple sequence alignment - TraesCS6D01G242200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G242200 chr6D 100.000 4127 0 0 1 4127 344310454 344306328 0.000000e+00 7622.0
1 TraesCS6D01G242200 chr6D 90.393 229 13 4 143 362 407462598 407462370 4.040000e-75 292.0
2 TraesCS6D01G242200 chr6D 85.057 261 26 8 388 647 407462396 407462148 1.900000e-63 254.0
3 TraesCS6D01G242200 chr6D 80.992 242 34 11 376 611 27405850 27406085 9.110000e-42 182.0
4 TraesCS6D01G242200 chr6A 95.485 3389 101 27 777 4127 484857122 484853748 0.000000e+00 5363.0
5 TraesCS6D01G242200 chr6B 96.510 2321 59 12 1534 3837 519852436 519850121 0.000000e+00 3818.0
6 TraesCS6D01G242200 chr6B 87.618 638 50 11 917 1535 519853093 519852466 0.000000e+00 713.0
7 TraesCS6D01G242200 chr6B 94.521 292 9 1 3834 4125 519848301 519848017 1.050000e-120 444.0
8 TraesCS6D01G242200 chr5A 88.645 273 21 2 26 288 667124530 667124802 1.430000e-84 324.0
9 TraesCS6D01G242200 chr5A 79.298 285 49 10 368 649 342410597 342410874 1.510000e-44 191.0
10 TraesCS6D01G242200 chr5A 85.185 81 11 1 489 569 600471542 600471621 9.510000e-12 82.4
11 TraesCS6D01G242200 chr7D 86.620 284 33 4 367 648 619229045 619229325 4.010000e-80 309.0
12 TraesCS6D01G242200 chr4D 87.004 277 23 3 25 288 486908587 486908863 2.410000e-77 300.0
13 TraesCS6D01G242200 chr2D 86.940 268 30 4 388 654 651289051 651288788 3.120000e-76 296.0
14 TraesCS6D01G242200 chr2D 87.079 178 17 1 123 294 651289251 651289074 3.250000e-46 196.0
15 TraesCS6D01G242200 chr2B 79.597 397 76 5 1980 2373 674028030 674028424 3.140000e-71 279.0
16 TraesCS6D01G242200 chr5B 87.444 223 28 0 425 647 383082950 383083172 1.470000e-64 257.0
17 TraesCS6D01G242200 chr3B 88.202 178 15 1 123 294 29376575 29376752 1.500000e-49 207.0
18 TraesCS6D01G242200 chr4A 88.043 92 9 1 1 90 595535658 595535749 1.570000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G242200 chr6D 344306328 344310454 4126 True 7622.000000 7622 100.000 1 4127 1 chr6D.!!$R1 4126
1 TraesCS6D01G242200 chr6A 484853748 484857122 3374 True 5363.000000 5363 95.485 777 4127 1 chr6A.!!$R1 3350
2 TraesCS6D01G242200 chr6B 519848017 519853093 5076 True 1658.333333 3818 92.883 917 4125 3 chr6B.!!$R1 3208

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
406 407 0.033601 GAGGAGAGAGGCTGTGAGGA 60.034 60.0 0.0 0.0 0.0 3.71 F
514 515 0.105913 TTCTGGGTTTGGGTTGGGAC 60.106 55.0 0.0 0.0 0.0 4.46 F
709 710 0.178068 CCCCTCACCACTTATGACCG 59.822 60.0 0.0 0.0 0.0 4.79 F
710 711 0.462047 CCCTCACCACTTATGACCGC 60.462 60.0 0.0 0.0 0.0 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1423 1454 0.251916 AACAGCATGCTAACGGCCTA 59.748 50.000 22.19 0.0 42.53 3.93 R
1899 1983 0.508641 GCATATCAACCGCGTGCTAG 59.491 55.000 4.92 0.0 33.25 3.42 R
2438 2524 5.581874 TCGCTATTTTTAGGAAAAGGGTACG 59.418 40.000 0.00 0.0 38.09 3.67 R
3296 3393 4.168283 AGGCTAGAGTCAACTAGGGTATCA 59.832 45.833 0.00 0.0 39.88 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.114616 CTTCCTCCAGCGCGTGTG 61.115 66.667 8.43 5.72 0.00 3.82
47 48 3.268603 CGTGTGCTGCGTGACCAA 61.269 61.111 0.00 0.00 0.00 3.67
48 49 2.327940 GTGTGCTGCGTGACCAAC 59.672 61.111 0.00 0.00 0.00 3.77
49 50 2.124942 TGTGCTGCGTGACCAACA 60.125 55.556 0.00 0.00 0.00 3.33
50 51 2.327940 GTGCTGCGTGACCAACAC 59.672 61.111 0.00 0.00 45.11 3.32
51 52 2.899838 TGCTGCGTGACCAACACC 60.900 61.111 0.00 0.00 45.73 4.16
52 53 4.012895 GCTGCGTGACCAACACCG 62.013 66.667 0.00 0.00 45.73 4.94
53 54 4.012895 CTGCGTGACCAACACCGC 62.013 66.667 0.00 0.00 45.73 5.68
84 85 2.556287 GGCAACGCGAAGTCCAAG 59.444 61.111 15.93 0.00 0.00 3.61
85 86 1.959226 GGCAACGCGAAGTCCAAGA 60.959 57.895 15.93 0.00 0.00 3.02
86 87 1.204312 GCAACGCGAAGTCCAAGAC 59.796 57.895 15.93 0.00 0.00 3.01
87 88 1.487231 CAACGCGAAGTCCAAGACG 59.513 57.895 15.93 0.00 37.67 4.18
88 89 1.663702 AACGCGAAGTCCAAGACGG 60.664 57.895 15.93 0.00 37.67 4.79
89 90 2.809601 CGCGAAGTCCAAGACGGG 60.810 66.667 0.00 0.00 37.67 5.28
90 91 2.342648 GCGAAGTCCAAGACGGGT 59.657 61.111 0.00 0.00 37.67 5.28
91 92 1.588082 GCGAAGTCCAAGACGGGTA 59.412 57.895 0.00 0.00 37.67 3.69
92 93 0.735287 GCGAAGTCCAAGACGGGTAC 60.735 60.000 0.00 0.00 37.67 3.34
136 137 3.188786 CAAGGCGGTAGCGCAGAC 61.189 66.667 36.52 21.65 46.35 3.51
137 138 4.796231 AAGGCGGTAGCGCAGACG 62.796 66.667 36.52 11.97 46.35 4.18
173 174 4.364409 GCCGTTCGCGACACCAAC 62.364 66.667 9.15 2.33 44.71 3.77
174 175 3.708734 CCGTTCGCGACACCAACC 61.709 66.667 9.15 0.00 44.71 3.77
175 176 3.708734 CGTTCGCGACACCAACCC 61.709 66.667 9.15 0.00 44.71 4.11
176 177 3.708734 GTTCGCGACACCAACCCG 61.709 66.667 9.15 0.00 0.00 5.28
193 194 4.383602 GCGCGGCAACAACGATGT 62.384 61.111 8.83 0.00 43.14 3.06
194 195 2.202171 CGCGGCAACAACGATGTC 60.202 61.111 0.00 0.00 39.40 3.06
196 197 2.202171 CGGCAACAACGATGTCGC 60.202 61.111 0.00 0.00 44.43 5.19
198 199 2.942879 GCAACAACGATGTCGCCA 59.057 55.556 0.00 0.00 44.43 5.69
199 200 1.281353 GCAACAACGATGTCGCCAA 59.719 52.632 0.00 0.00 44.43 4.52
200 201 0.725784 GCAACAACGATGTCGCCAAG 60.726 55.000 0.00 0.00 44.43 3.61
201 202 0.110238 CAACAACGATGTCGCCAAGG 60.110 55.000 0.00 0.00 44.43 3.61
202 203 0.534203 AACAACGATGTCGCCAAGGT 60.534 50.000 0.00 0.00 44.43 3.50
203 204 1.227999 ACAACGATGTCGCCAAGGTG 61.228 55.000 1.77 0.00 44.43 4.00
204 205 1.671054 AACGATGTCGCCAAGGTGG 60.671 57.895 1.77 0.00 44.43 4.61
205 206 2.047274 CGATGTCGCCAAGGTGGT 60.047 61.111 0.00 0.00 40.46 4.16
206 207 2.100631 CGATGTCGCCAAGGTGGTC 61.101 63.158 0.00 0.00 40.46 4.02
207 208 1.745489 GATGTCGCCAAGGTGGTCC 60.745 63.158 0.00 0.00 40.46 4.46
208 209 2.463589 GATGTCGCCAAGGTGGTCCA 62.464 60.000 0.00 0.00 40.46 4.02
209 210 2.668550 GTCGCCAAGGTGGTCCAC 60.669 66.667 14.13 14.13 40.46 4.02
210 211 3.164977 TCGCCAAGGTGGTCCACA 61.165 61.111 23.48 0.00 40.46 4.17
211 212 2.669569 CGCCAAGGTGGTCCACAG 60.670 66.667 23.48 12.11 40.46 3.66
212 213 2.836154 GCCAAGGTGGTCCACAGA 59.164 61.111 23.48 0.00 40.46 3.41
213 214 1.302832 GCCAAGGTGGTCCACAGAG 60.303 63.158 23.48 11.43 40.46 3.35
214 215 1.302832 CCAAGGTGGTCCACAGAGC 60.303 63.158 23.48 6.12 41.06 4.09
215 216 1.669115 CAAGGTGGTCCACAGAGCG 60.669 63.158 23.48 3.30 43.71 5.03
216 217 2.883828 AAGGTGGTCCACAGAGCGG 61.884 63.158 23.48 0.00 43.71 5.52
263 264 4.194720 CCGGCGAAGGAGGACGAG 62.195 72.222 9.30 0.00 0.00 4.18
264 265 3.441290 CGGCGAAGGAGGACGAGT 61.441 66.667 0.00 0.00 0.00 4.18
265 266 2.490685 GGCGAAGGAGGACGAGTC 59.509 66.667 0.00 0.00 0.00 3.36
266 267 2.100603 GCGAAGGAGGACGAGTCG 59.899 66.667 11.85 11.85 34.89 4.18
267 268 2.792599 CGAAGGAGGACGAGTCGG 59.207 66.667 18.30 0.00 0.00 4.79
268 269 2.039405 CGAAGGAGGACGAGTCGGT 61.039 63.158 18.30 2.14 0.00 4.69
269 270 1.801983 GAAGGAGGACGAGTCGGTC 59.198 63.158 18.30 11.51 36.18 4.79
270 271 0.677414 GAAGGAGGACGAGTCGGTCT 60.677 60.000 18.30 13.23 37.12 3.85
271 272 0.961358 AAGGAGGACGAGTCGGTCTG 60.961 60.000 18.30 0.00 37.12 3.51
272 273 2.486042 GAGGACGAGTCGGTCTGC 59.514 66.667 18.30 0.81 37.12 4.26
273 274 2.034376 AGGACGAGTCGGTCTGCT 59.966 61.111 18.30 3.48 37.12 4.24
274 275 1.984321 GAGGACGAGTCGGTCTGCTC 61.984 65.000 18.30 12.06 37.12 4.26
275 276 2.486042 GACGAGTCGGTCTGCTCC 59.514 66.667 18.30 0.00 34.09 4.70
291 292 3.149899 TCCGACGAGGAGTACAGTC 57.850 57.895 0.00 0.00 45.98 3.51
292 293 0.612229 TCCGACGAGGAGTACAGTCT 59.388 55.000 0.00 0.00 45.98 3.24
293 294 0.727970 CCGACGAGGAGTACAGTCTG 59.272 60.000 0.00 0.00 45.00 3.51
294 295 0.097325 CGACGAGGAGTACAGTCTGC 59.903 60.000 0.00 0.00 0.00 4.26
295 296 1.455248 GACGAGGAGTACAGTCTGCT 58.545 55.000 0.00 0.00 38.75 4.24
296 297 1.399089 GACGAGGAGTACAGTCTGCTC 59.601 57.143 0.00 9.88 45.21 4.26
299 300 2.569183 GGAGTACAGTCTGCTCCGT 58.431 57.895 9.88 0.00 41.47 4.69
300 301 0.452585 GGAGTACAGTCTGCTCCGTC 59.547 60.000 9.88 0.00 41.47 4.79
301 302 0.097325 GAGTACAGTCTGCTCCGTCG 59.903 60.000 0.00 0.00 0.00 5.12
302 303 1.136984 GTACAGTCTGCTCCGTCGG 59.863 63.158 4.39 4.39 0.00 4.79
303 304 2.697761 TACAGTCTGCTCCGTCGGC 61.698 63.158 6.34 0.00 0.00 5.54
311 312 3.740397 CTCCGTCGGCGTGGTGTA 61.740 66.667 9.28 1.81 36.15 2.90
312 313 3.958822 CTCCGTCGGCGTGGTGTAC 62.959 68.421 9.28 2.79 36.15 2.90
313 314 4.047059 CCGTCGGCGTGGTGTACT 62.047 66.667 9.28 0.00 36.15 2.73
314 315 2.049802 CGTCGGCGTGGTGTACTT 60.050 61.111 6.85 0.00 0.00 2.24
315 316 2.369629 CGTCGGCGTGGTGTACTTG 61.370 63.158 6.85 0.00 0.00 3.16
316 317 1.300388 GTCGGCGTGGTGTACTTGT 60.300 57.895 6.85 0.00 0.00 3.16
317 318 1.300311 TCGGCGTGGTGTACTTGTG 60.300 57.895 6.85 0.00 0.00 3.33
318 319 2.943653 GGCGTGGTGTACTTGTGC 59.056 61.111 0.00 0.00 0.00 4.57
319 320 2.549282 GCGTGGTGTACTTGTGCG 59.451 61.111 0.00 0.00 0.00 5.34
320 321 1.952133 GCGTGGTGTACTTGTGCGA 60.952 57.895 0.00 0.00 0.00 5.10
321 322 1.886861 GCGTGGTGTACTTGTGCGAG 61.887 60.000 0.00 0.00 0.00 5.03
322 323 0.318360 CGTGGTGTACTTGTGCGAGA 60.318 55.000 0.00 0.00 0.00 4.04
323 324 1.668919 CGTGGTGTACTTGTGCGAGAT 60.669 52.381 0.00 0.00 0.00 2.75
324 325 1.726791 GTGGTGTACTTGTGCGAGATG 59.273 52.381 0.00 0.00 0.00 2.90
325 326 1.343142 TGGTGTACTTGTGCGAGATGT 59.657 47.619 0.00 0.00 0.00 3.06
326 327 1.726791 GGTGTACTTGTGCGAGATGTG 59.273 52.381 0.00 0.00 0.00 3.21
327 328 1.126846 GTGTACTTGTGCGAGATGTGC 59.873 52.381 0.00 0.00 0.00 4.57
328 329 0.721718 GTACTTGTGCGAGATGTGCC 59.278 55.000 0.00 0.00 0.00 5.01
329 330 0.735978 TACTTGTGCGAGATGTGCCG 60.736 55.000 0.00 0.00 0.00 5.69
347 348 2.292103 CGCAGGAAAAGAGGAGAGAG 57.708 55.000 0.00 0.00 0.00 3.20
348 349 1.821753 CGCAGGAAAAGAGGAGAGAGA 59.178 52.381 0.00 0.00 0.00 3.10
349 350 2.159254 CGCAGGAAAAGAGGAGAGAGAG 60.159 54.545 0.00 0.00 0.00 3.20
350 351 2.831526 GCAGGAAAAGAGGAGAGAGAGT 59.168 50.000 0.00 0.00 0.00 3.24
351 352 3.368323 GCAGGAAAAGAGGAGAGAGAGTG 60.368 52.174 0.00 0.00 0.00 3.51
352 353 4.085733 CAGGAAAAGAGGAGAGAGAGTGA 58.914 47.826 0.00 0.00 0.00 3.41
353 354 4.158394 CAGGAAAAGAGGAGAGAGAGTGAG 59.842 50.000 0.00 0.00 0.00 3.51
354 355 3.447229 GGAAAAGAGGAGAGAGAGTGAGG 59.553 52.174 0.00 0.00 0.00 3.86
355 356 4.340617 GAAAAGAGGAGAGAGAGTGAGGA 58.659 47.826 0.00 0.00 0.00 3.71
356 357 3.652057 AAGAGGAGAGAGAGTGAGGAG 57.348 52.381 0.00 0.00 0.00 3.69
357 358 2.845659 AGAGGAGAGAGAGTGAGGAGA 58.154 52.381 0.00 0.00 0.00 3.71
358 359 2.774234 AGAGGAGAGAGAGTGAGGAGAG 59.226 54.545 0.00 0.00 0.00 3.20
359 360 2.771943 GAGGAGAGAGAGTGAGGAGAGA 59.228 54.545 0.00 0.00 0.00 3.10
360 361 2.774234 AGGAGAGAGAGTGAGGAGAGAG 59.226 54.545 0.00 0.00 0.00 3.20
361 362 2.158755 GGAGAGAGAGTGAGGAGAGAGG 60.159 59.091 0.00 0.00 0.00 3.69
362 363 1.212935 AGAGAGAGTGAGGAGAGAGGC 59.787 57.143 0.00 0.00 0.00 4.70
363 364 1.212935 GAGAGAGTGAGGAGAGAGGCT 59.787 57.143 0.00 0.00 0.00 4.58
364 365 1.064463 AGAGAGTGAGGAGAGAGGCTG 60.064 57.143 0.00 0.00 0.00 4.85
365 366 0.684153 AGAGTGAGGAGAGAGGCTGC 60.684 60.000 0.00 0.00 34.75 5.25
366 367 2.003658 GAGTGAGGAGAGAGGCTGCG 62.004 65.000 0.00 0.00 40.35 5.18
367 368 2.049185 GTGAGGAGAGAGGCTGCGA 61.049 63.158 0.00 0.00 40.35 5.10
368 369 1.752310 TGAGGAGAGAGGCTGCGAG 60.752 63.158 0.00 0.00 40.35 5.03
369 370 2.441901 AGGAGAGAGGCTGCGAGG 60.442 66.667 0.00 0.00 40.35 4.63
370 371 2.441164 GGAGAGAGGCTGCGAGGA 60.441 66.667 0.00 0.00 0.00 3.71
371 372 2.055042 GGAGAGAGGCTGCGAGGAA 61.055 63.158 0.00 0.00 0.00 3.36
372 373 1.608717 GGAGAGAGGCTGCGAGGAAA 61.609 60.000 0.00 0.00 0.00 3.13
373 374 0.247736 GAGAGAGGCTGCGAGGAAAA 59.752 55.000 0.00 0.00 0.00 2.29
374 375 0.248843 AGAGAGGCTGCGAGGAAAAG 59.751 55.000 0.00 0.00 0.00 2.27
375 376 0.247736 GAGAGGCTGCGAGGAAAAGA 59.752 55.000 0.00 0.00 0.00 2.52
376 377 0.248843 AGAGGCTGCGAGGAAAAGAG 59.751 55.000 0.00 0.00 0.00 2.85
377 378 0.742635 GAGGCTGCGAGGAAAAGAGG 60.743 60.000 0.00 0.00 0.00 3.69
378 379 1.194781 AGGCTGCGAGGAAAAGAGGA 61.195 55.000 0.00 0.00 0.00 3.71
379 380 0.321653 GGCTGCGAGGAAAAGAGGAA 60.322 55.000 0.00 0.00 0.00 3.36
380 381 1.523758 GCTGCGAGGAAAAGAGGAAA 58.476 50.000 0.00 0.00 0.00 3.13
381 382 1.466558 GCTGCGAGGAAAAGAGGAAAG 59.533 52.381 0.00 0.00 0.00 2.62
382 383 2.872038 GCTGCGAGGAAAAGAGGAAAGA 60.872 50.000 0.00 0.00 0.00 2.52
383 384 2.999355 CTGCGAGGAAAAGAGGAAAGAG 59.001 50.000 0.00 0.00 0.00 2.85
384 385 2.632996 TGCGAGGAAAAGAGGAAAGAGA 59.367 45.455 0.00 0.00 0.00 3.10
385 386 3.258228 GCGAGGAAAAGAGGAAAGAGAG 58.742 50.000 0.00 0.00 0.00 3.20
386 387 3.306433 GCGAGGAAAAGAGGAAAGAGAGT 60.306 47.826 0.00 0.00 0.00 3.24
387 388 4.241681 CGAGGAAAAGAGGAAAGAGAGTG 58.758 47.826 0.00 0.00 0.00 3.51
388 389 4.021894 CGAGGAAAAGAGGAAAGAGAGTGA 60.022 45.833 0.00 0.00 0.00 3.41
389 390 5.478407 GAGGAAAAGAGGAAAGAGAGTGAG 58.522 45.833 0.00 0.00 0.00 3.51
390 391 4.285775 AGGAAAAGAGGAAAGAGAGTGAGG 59.714 45.833 0.00 0.00 0.00 3.86
391 392 4.284746 GGAAAAGAGGAAAGAGAGTGAGGA 59.715 45.833 0.00 0.00 0.00 3.71
392 393 5.478407 GAAAAGAGGAAAGAGAGTGAGGAG 58.522 45.833 0.00 0.00 0.00 3.69
393 394 4.396357 AAGAGGAAAGAGAGTGAGGAGA 57.604 45.455 0.00 0.00 0.00 3.71
394 395 3.968265 AGAGGAAAGAGAGTGAGGAGAG 58.032 50.000 0.00 0.00 0.00 3.20
395 396 3.591527 AGAGGAAAGAGAGTGAGGAGAGA 59.408 47.826 0.00 0.00 0.00 3.10
396 397 3.947834 GAGGAAAGAGAGTGAGGAGAGAG 59.052 52.174 0.00 0.00 0.00 3.20
397 398 3.023832 GGAAAGAGAGTGAGGAGAGAGG 58.976 54.545 0.00 0.00 0.00 3.69
398 399 2.143876 AAGAGAGTGAGGAGAGAGGC 57.856 55.000 0.00 0.00 0.00 4.70
399 400 1.298953 AGAGAGTGAGGAGAGAGGCT 58.701 55.000 0.00 0.00 0.00 4.58
400 401 1.064463 AGAGAGTGAGGAGAGAGGCTG 60.064 57.143 0.00 0.00 0.00 4.85
401 402 0.704076 AGAGTGAGGAGAGAGGCTGT 59.296 55.000 0.00 0.00 0.00 4.40
402 403 0.817013 GAGTGAGGAGAGAGGCTGTG 59.183 60.000 0.00 0.00 0.00 3.66
403 404 0.407528 AGTGAGGAGAGAGGCTGTGA 59.592 55.000 0.00 0.00 0.00 3.58
404 405 0.817013 GTGAGGAGAGAGGCTGTGAG 59.183 60.000 0.00 0.00 0.00 3.51
405 406 0.324183 TGAGGAGAGAGGCTGTGAGG 60.324 60.000 0.00 0.00 0.00 3.86
406 407 0.033601 GAGGAGAGAGGCTGTGAGGA 60.034 60.000 0.00 0.00 0.00 3.71
407 408 0.411452 AGGAGAGAGGCTGTGAGGAA 59.589 55.000 0.00 0.00 0.00 3.36
408 409 1.203237 AGGAGAGAGGCTGTGAGGAAA 60.203 52.381 0.00 0.00 0.00 3.13
409 410 1.625818 GGAGAGAGGCTGTGAGGAAAA 59.374 52.381 0.00 0.00 0.00 2.29
410 411 2.354604 GGAGAGAGGCTGTGAGGAAAAG 60.355 54.545 0.00 0.00 0.00 2.27
411 412 2.564947 GAGAGAGGCTGTGAGGAAAAGA 59.435 50.000 0.00 0.00 0.00 2.52
412 413 2.566724 AGAGAGGCTGTGAGGAAAAGAG 59.433 50.000 0.00 0.00 0.00 2.85
413 414 1.627834 AGAGGCTGTGAGGAAAAGAGG 59.372 52.381 0.00 0.00 0.00 3.69
414 415 1.625818 GAGGCTGTGAGGAAAAGAGGA 59.374 52.381 0.00 0.00 0.00 3.71
415 416 1.627834 AGGCTGTGAGGAAAAGAGGAG 59.372 52.381 0.00 0.00 0.00 3.69
416 417 1.625818 GGCTGTGAGGAAAAGAGGAGA 59.374 52.381 0.00 0.00 0.00 3.71
417 418 2.354604 GGCTGTGAGGAAAAGAGGAGAG 60.355 54.545 0.00 0.00 0.00 3.20
418 419 2.564947 GCTGTGAGGAAAAGAGGAGAGA 59.435 50.000 0.00 0.00 0.00 3.10
419 420 3.368323 GCTGTGAGGAAAAGAGGAGAGAG 60.368 52.174 0.00 0.00 0.00 3.20
420 421 4.085733 CTGTGAGGAAAAGAGGAGAGAGA 58.914 47.826 0.00 0.00 0.00 3.10
421 422 4.085733 TGTGAGGAAAAGAGGAGAGAGAG 58.914 47.826 0.00 0.00 0.00 3.20
422 423 4.086457 GTGAGGAAAAGAGGAGAGAGAGT 58.914 47.826 0.00 0.00 0.00 3.24
423 424 4.082245 GTGAGGAAAAGAGGAGAGAGAGTG 60.082 50.000 0.00 0.00 0.00 3.51
424 425 4.202620 TGAGGAAAAGAGGAGAGAGAGTGA 60.203 45.833 0.00 0.00 0.00 3.41
425 426 4.344104 AGGAAAAGAGGAGAGAGAGTGAG 58.656 47.826 0.00 0.00 0.00 3.51
426 427 3.447229 GGAAAAGAGGAGAGAGAGTGAGG 59.553 52.174 0.00 0.00 0.00 3.86
427 428 4.340617 GAAAAGAGGAGAGAGAGTGAGGA 58.659 47.826 0.00 0.00 0.00 3.71
428 429 3.652057 AAGAGGAGAGAGAGTGAGGAG 57.348 52.381 0.00 0.00 0.00 3.69
429 430 2.845659 AGAGGAGAGAGAGTGAGGAGA 58.154 52.381 0.00 0.00 0.00 3.71
430 431 2.774234 AGAGGAGAGAGAGTGAGGAGAG 59.226 54.545 0.00 0.00 0.00 3.20
431 432 2.771943 GAGGAGAGAGAGTGAGGAGAGA 59.228 54.545 0.00 0.00 0.00 3.10
432 433 2.774234 AGGAGAGAGAGTGAGGAGAGAG 59.226 54.545 0.00 0.00 0.00 3.20
433 434 2.158755 GGAGAGAGAGTGAGGAGAGAGG 60.159 59.091 0.00 0.00 0.00 3.69
434 435 1.212935 AGAGAGAGTGAGGAGAGAGGC 59.787 57.143 0.00 0.00 0.00 4.70
435 436 1.212935 GAGAGAGTGAGGAGAGAGGCT 59.787 57.143 0.00 0.00 0.00 4.58
436 437 1.064463 AGAGAGTGAGGAGAGAGGCTG 60.064 57.143 0.00 0.00 0.00 4.85
437 438 0.998928 AGAGTGAGGAGAGAGGCTGA 59.001 55.000 0.00 0.00 0.00 4.26
438 439 1.102978 GAGTGAGGAGAGAGGCTGAC 58.897 60.000 0.00 0.00 0.00 3.51
439 440 0.704076 AGTGAGGAGAGAGGCTGACT 59.296 55.000 0.00 0.00 0.00 3.41
440 441 1.077005 AGTGAGGAGAGAGGCTGACTT 59.923 52.381 0.00 0.00 0.00 3.01
441 442 1.204467 GTGAGGAGAGAGGCTGACTTG 59.796 57.143 0.00 0.00 0.00 3.16
442 443 1.203112 TGAGGAGAGAGGCTGACTTGT 60.203 52.381 0.00 0.00 0.00 3.16
443 444 1.204467 GAGGAGAGAGGCTGACTTGTG 59.796 57.143 0.00 0.00 0.00 3.33
444 445 0.248843 GGAGAGAGGCTGACTTGTGG 59.751 60.000 0.00 0.00 0.00 4.17
445 446 0.248843 GAGAGAGGCTGACTTGTGGG 59.751 60.000 0.00 0.00 0.00 4.61
446 447 1.197430 AGAGAGGCTGACTTGTGGGG 61.197 60.000 0.00 0.00 0.00 4.96
447 448 2.190488 GAGAGGCTGACTTGTGGGGG 62.190 65.000 0.00 0.00 0.00 5.40
448 449 2.450502 AGGCTGACTTGTGGGGGT 60.451 61.111 0.00 0.00 0.00 4.95
449 450 2.069165 GAGGCTGACTTGTGGGGGTT 62.069 60.000 0.00 0.00 0.00 4.11
450 451 1.152546 GGCTGACTTGTGGGGGTTT 60.153 57.895 0.00 0.00 0.00 3.27
451 452 0.759060 GGCTGACTTGTGGGGGTTTT 60.759 55.000 0.00 0.00 0.00 2.43
452 453 0.389025 GCTGACTTGTGGGGGTTTTG 59.611 55.000 0.00 0.00 0.00 2.44
453 454 0.389025 CTGACTTGTGGGGGTTTTGC 59.611 55.000 0.00 0.00 0.00 3.68
454 455 0.324738 TGACTTGTGGGGGTTTTGCA 60.325 50.000 0.00 0.00 0.00 4.08
455 456 1.047801 GACTTGTGGGGGTTTTGCAT 58.952 50.000 0.00 0.00 0.00 3.96
456 457 0.758123 ACTTGTGGGGGTTTTGCATG 59.242 50.000 0.00 0.00 0.00 4.06
457 458 0.603439 CTTGTGGGGGTTTTGCATGC 60.603 55.000 11.82 11.82 0.00 4.06
458 459 1.340399 TTGTGGGGGTTTTGCATGCA 61.340 50.000 18.46 18.46 0.00 3.96
459 460 1.340399 TGTGGGGGTTTTGCATGCAA 61.340 50.000 28.80 28.80 0.00 4.08
460 461 0.179034 GTGGGGGTTTTGCATGCAAA 60.179 50.000 35.80 35.80 43.23 3.68
468 469 2.054687 TTTGCATGCAAAAGAGAGCG 57.945 45.000 36.92 0.00 42.16 5.03
469 470 0.387622 TTGCATGCAAAAGAGAGCGC 60.388 50.000 30.19 0.00 32.44 5.92
470 471 1.515736 GCATGCAAAAGAGAGCGCC 60.516 57.895 14.21 0.00 0.00 6.53
471 472 1.226211 CATGCAAAAGAGAGCGCCG 60.226 57.895 2.29 0.00 0.00 6.46
472 473 1.375908 ATGCAAAAGAGAGCGCCGA 60.376 52.632 2.29 0.00 0.00 5.54
473 474 1.639298 ATGCAAAAGAGAGCGCCGAC 61.639 55.000 2.29 0.00 0.00 4.79
474 475 2.772189 CAAAAGAGAGCGCCGACG 59.228 61.111 2.29 0.00 44.07 5.12
499 500 3.437795 CTGCCGCCCAGCTTTCTG 61.438 66.667 0.00 0.00 40.02 3.02
508 509 3.131850 CAGCTTTCTGGGTTTGGGT 57.868 52.632 0.00 0.00 36.68 4.51
509 510 1.413118 CAGCTTTCTGGGTTTGGGTT 58.587 50.000 0.00 0.00 36.68 4.11
510 511 1.069049 CAGCTTTCTGGGTTTGGGTTG 59.931 52.381 0.00 0.00 36.68 3.77
511 512 0.392706 GCTTTCTGGGTTTGGGTTGG 59.607 55.000 0.00 0.00 0.00 3.77
512 513 1.047801 CTTTCTGGGTTTGGGTTGGG 58.952 55.000 0.00 0.00 0.00 4.12
513 514 0.637195 TTTCTGGGTTTGGGTTGGGA 59.363 50.000 0.00 0.00 0.00 4.37
514 515 0.105913 TTCTGGGTTTGGGTTGGGAC 60.106 55.000 0.00 0.00 0.00 4.46
515 516 1.533033 CTGGGTTTGGGTTGGGACC 60.533 63.158 0.00 0.00 45.75 4.46
524 525 4.362476 GTTGGGACCGCCGTACGT 62.362 66.667 15.21 0.00 41.42 3.57
525 526 2.674727 TTGGGACCGCCGTACGTA 60.675 61.111 15.21 0.00 41.42 3.57
526 527 2.271716 TTGGGACCGCCGTACGTAA 61.272 57.895 15.21 0.00 41.42 3.18
527 528 1.603236 TTGGGACCGCCGTACGTAAT 61.603 55.000 15.21 0.00 41.42 1.89
528 529 1.141665 GGGACCGCCGTACGTAATT 59.858 57.895 15.21 0.00 41.42 1.40
529 530 0.460109 GGGACCGCCGTACGTAATTT 60.460 55.000 15.21 0.00 41.42 1.82
530 531 1.358877 GGACCGCCGTACGTAATTTT 58.641 50.000 15.21 0.00 41.42 1.82
531 532 1.060986 GGACCGCCGTACGTAATTTTG 59.939 52.381 15.21 0.00 41.42 2.44
532 533 1.060986 GACCGCCGTACGTAATTTTGG 59.939 52.381 15.21 7.22 41.42 3.28
533 534 0.247775 CCGCCGTACGTAATTTTGGC 60.248 55.000 15.21 6.66 41.42 4.52
534 535 0.247775 CGCCGTACGTAATTTTGGCC 60.248 55.000 15.21 0.00 39.30 5.36
535 536 0.803740 GCCGTACGTAATTTTGGCCA 59.196 50.000 15.21 0.00 36.51 5.36
536 537 1.199558 GCCGTACGTAATTTTGGCCAA 59.800 47.619 16.05 16.05 36.51 4.52
537 538 2.351544 GCCGTACGTAATTTTGGCCAAA 60.352 45.455 27.13 27.13 36.51 3.28
538 539 3.673866 GCCGTACGTAATTTTGGCCAAAT 60.674 43.478 30.78 19.60 36.57 2.32
539 540 4.099824 CCGTACGTAATTTTGGCCAAATC 58.900 43.478 30.78 18.99 33.60 2.17
540 541 4.099824 CGTACGTAATTTTGGCCAAATCC 58.900 43.478 30.78 16.98 33.60 3.01
541 542 3.224884 ACGTAATTTTGGCCAAATCCG 57.775 42.857 30.78 27.25 33.60 4.18
542 543 2.094442 ACGTAATTTTGGCCAAATCCGG 60.094 45.455 30.78 20.06 33.60 5.14
549 550 3.432186 GCCAAATCCGGCGCTATT 58.568 55.556 7.64 0.00 43.52 1.73
550 551 1.733526 GCCAAATCCGGCGCTATTT 59.266 52.632 7.64 7.01 43.52 1.40
551 552 0.594796 GCCAAATCCGGCGCTATTTG 60.595 55.000 26.03 26.03 43.52 2.32
552 553 1.021202 CCAAATCCGGCGCTATTTGA 58.979 50.000 30.69 13.68 42.90 2.69
553 554 1.403679 CCAAATCCGGCGCTATTTGAA 59.596 47.619 30.69 5.62 42.90 2.69
554 555 2.450160 CAAATCCGGCGCTATTTGAAC 58.550 47.619 27.65 2.49 42.90 3.18
555 556 2.038387 AATCCGGCGCTATTTGAACT 57.962 45.000 7.64 0.00 0.00 3.01
556 557 2.038387 ATCCGGCGCTATTTGAACTT 57.962 45.000 7.64 0.00 0.00 2.66
557 558 1.816074 TCCGGCGCTATTTGAACTTT 58.184 45.000 7.64 0.00 0.00 2.66
558 559 2.156098 TCCGGCGCTATTTGAACTTTT 58.844 42.857 7.64 0.00 0.00 2.27
559 560 2.095466 TCCGGCGCTATTTGAACTTTTG 60.095 45.455 7.64 0.00 0.00 2.44
560 561 2.095466 CCGGCGCTATTTGAACTTTTGA 60.095 45.455 7.64 0.00 0.00 2.69
561 562 3.163594 CGGCGCTATTTGAACTTTTGAG 58.836 45.455 7.64 0.00 0.00 3.02
562 563 3.501950 GGCGCTATTTGAACTTTTGAGG 58.498 45.455 7.64 0.00 0.00 3.86
563 564 3.190535 GGCGCTATTTGAACTTTTGAGGA 59.809 43.478 7.64 0.00 0.00 3.71
564 565 4.159120 GCGCTATTTGAACTTTTGAGGAC 58.841 43.478 0.00 0.00 0.00 3.85
565 566 4.320202 GCGCTATTTGAACTTTTGAGGACA 60.320 41.667 0.00 0.00 0.00 4.02
566 567 5.619981 GCGCTATTTGAACTTTTGAGGACAT 60.620 40.000 0.00 0.00 0.00 3.06
567 568 5.796935 CGCTATTTGAACTTTTGAGGACATG 59.203 40.000 0.00 0.00 0.00 3.21
568 569 6.348458 CGCTATTTGAACTTTTGAGGACATGA 60.348 38.462 0.00 0.00 0.00 3.07
569 570 6.803807 GCTATTTGAACTTTTGAGGACATGAC 59.196 38.462 0.00 0.00 0.00 3.06
570 571 6.966534 ATTTGAACTTTTGAGGACATGACT 57.033 33.333 0.00 0.00 0.00 3.41
571 572 5.756195 TTGAACTTTTGAGGACATGACTG 57.244 39.130 0.00 0.00 0.00 3.51
572 573 4.136796 TGAACTTTTGAGGACATGACTGG 58.863 43.478 0.00 0.00 0.00 4.00
573 574 3.146104 ACTTTTGAGGACATGACTGGG 57.854 47.619 0.00 0.00 0.00 4.45
574 575 2.443255 ACTTTTGAGGACATGACTGGGT 59.557 45.455 0.00 0.00 0.00 4.51
575 576 2.566833 TTTGAGGACATGACTGGGTG 57.433 50.000 0.00 0.00 0.00 4.61
576 577 1.728323 TTGAGGACATGACTGGGTGA 58.272 50.000 0.00 0.00 0.00 4.02
577 578 1.728323 TGAGGACATGACTGGGTGAA 58.272 50.000 0.00 0.00 0.00 3.18
578 579 2.054021 TGAGGACATGACTGGGTGAAA 58.946 47.619 0.00 0.00 0.00 2.69
579 580 2.441375 TGAGGACATGACTGGGTGAAAA 59.559 45.455 0.00 0.00 0.00 2.29
580 581 3.117701 TGAGGACATGACTGGGTGAAAAA 60.118 43.478 0.00 0.00 0.00 1.94
603 604 3.173853 CGCCGGCGATGAAAAAGA 58.826 55.556 44.86 0.00 42.83 2.52
604 605 1.226018 CGCCGGCGATGAAAAAGAC 60.226 57.895 44.86 0.00 42.83 3.01
605 606 1.136774 GCCGGCGATGAAAAAGACC 59.863 57.895 12.58 0.00 0.00 3.85
606 607 1.305930 GCCGGCGATGAAAAAGACCT 61.306 55.000 12.58 0.00 0.00 3.85
607 608 0.727398 CCGGCGATGAAAAAGACCTC 59.273 55.000 9.30 0.00 0.00 3.85
608 609 0.727398 CGGCGATGAAAAAGACCTCC 59.273 55.000 0.00 0.00 0.00 4.30
609 610 1.676014 CGGCGATGAAAAAGACCTCCT 60.676 52.381 0.00 0.00 0.00 3.69
610 611 1.740025 GGCGATGAAAAAGACCTCCTG 59.260 52.381 0.00 0.00 0.00 3.86
611 612 2.615493 GGCGATGAAAAAGACCTCCTGA 60.615 50.000 0.00 0.00 0.00 3.86
612 613 3.074412 GCGATGAAAAAGACCTCCTGAA 58.926 45.455 0.00 0.00 0.00 3.02
613 614 3.126000 GCGATGAAAAAGACCTCCTGAAG 59.874 47.826 0.00 0.00 0.00 3.02
622 623 1.901085 CCTCCTGAAGGGGAACTCG 59.099 63.158 0.00 0.00 42.03 4.18
623 624 1.617947 CCTCCTGAAGGGGAACTCGG 61.618 65.000 0.00 0.00 42.03 4.63
624 625 1.612442 TCCTGAAGGGGAACTCGGG 60.612 63.158 0.00 0.00 35.41 5.14
625 626 2.670148 CCTGAAGGGGAACTCGGGG 61.670 68.421 0.00 0.00 0.00 5.73
626 627 2.609610 TGAAGGGGAACTCGGGGG 60.610 66.667 0.00 0.00 0.00 5.40
640 641 2.190578 GGGGGACGGCTGAAGATG 59.809 66.667 0.00 0.00 0.00 2.90
641 642 2.514824 GGGGACGGCTGAAGATGC 60.515 66.667 0.00 0.00 0.00 3.91
642 643 2.586792 GGGACGGCTGAAGATGCT 59.413 61.111 0.00 0.00 0.00 3.79
643 644 1.522580 GGGACGGCTGAAGATGCTC 60.523 63.158 0.00 0.00 0.00 4.26
644 645 1.519719 GGACGGCTGAAGATGCTCT 59.480 57.895 0.00 0.00 0.00 4.09
645 646 0.747255 GGACGGCTGAAGATGCTCTA 59.253 55.000 0.00 0.00 0.00 2.43
646 647 1.137086 GGACGGCTGAAGATGCTCTAA 59.863 52.381 0.00 0.00 0.00 2.10
647 648 2.468831 GACGGCTGAAGATGCTCTAAG 58.531 52.381 0.00 0.00 0.00 2.18
648 649 1.216122 CGGCTGAAGATGCTCTAAGC 58.784 55.000 0.00 10.03 42.82 3.09
649 650 1.202510 CGGCTGAAGATGCTCTAAGCT 60.203 52.381 14.58 0.00 42.97 3.74
650 651 2.035193 CGGCTGAAGATGCTCTAAGCTA 59.965 50.000 14.58 0.00 42.97 3.32
651 652 3.389221 GGCTGAAGATGCTCTAAGCTAC 58.611 50.000 14.58 0.00 42.97 3.58
652 653 3.069443 GGCTGAAGATGCTCTAAGCTACT 59.931 47.826 14.58 0.00 42.97 2.57
653 654 4.279671 GGCTGAAGATGCTCTAAGCTACTA 59.720 45.833 14.58 0.00 42.97 1.82
654 655 5.221342 GGCTGAAGATGCTCTAAGCTACTAA 60.221 44.000 14.58 0.00 42.97 2.24
655 656 6.454795 GCTGAAGATGCTCTAAGCTACTAAT 58.545 40.000 0.11 0.00 42.97 1.73
656 657 6.365789 GCTGAAGATGCTCTAAGCTACTAATG 59.634 42.308 0.11 0.00 42.97 1.90
657 658 6.219473 TGAAGATGCTCTAAGCTACTAATGC 58.781 40.000 0.11 0.00 42.97 3.56
658 659 5.146010 AGATGCTCTAAGCTACTAATGCC 57.854 43.478 0.11 0.00 42.97 4.40
659 660 4.837860 AGATGCTCTAAGCTACTAATGCCT 59.162 41.667 0.11 0.00 42.97 4.75
660 661 6.013379 AGATGCTCTAAGCTACTAATGCCTA 58.987 40.000 0.11 0.00 42.97 3.93
661 662 6.495181 AGATGCTCTAAGCTACTAATGCCTAA 59.505 38.462 0.11 0.00 42.97 2.69
662 663 6.479972 TGCTCTAAGCTACTAATGCCTAAA 57.520 37.500 0.11 0.00 42.97 1.85
663 664 6.884832 TGCTCTAAGCTACTAATGCCTAAAA 58.115 36.000 0.11 0.00 42.97 1.52
664 665 6.761714 TGCTCTAAGCTACTAATGCCTAAAAC 59.238 38.462 0.11 0.00 42.97 2.43
665 666 6.761714 GCTCTAAGCTACTAATGCCTAAAACA 59.238 38.462 0.00 0.00 38.45 2.83
666 667 7.280205 GCTCTAAGCTACTAATGCCTAAAACAA 59.720 37.037 0.00 0.00 38.45 2.83
667 668 9.331282 CTCTAAGCTACTAATGCCTAAAACAAT 57.669 33.333 0.00 0.00 0.00 2.71
668 669 9.326413 TCTAAGCTACTAATGCCTAAAACAATC 57.674 33.333 0.00 0.00 0.00 2.67
669 670 6.944234 AGCTACTAATGCCTAAAACAATCC 57.056 37.500 0.00 0.00 0.00 3.01
670 671 6.423182 AGCTACTAATGCCTAAAACAATCCA 58.577 36.000 0.00 0.00 0.00 3.41
671 672 6.318900 AGCTACTAATGCCTAAAACAATCCAC 59.681 38.462 0.00 0.00 0.00 4.02
672 673 6.094881 GCTACTAATGCCTAAAACAATCCACA 59.905 38.462 0.00 0.00 0.00 4.17
673 674 6.267496 ACTAATGCCTAAAACAATCCACAC 57.733 37.500 0.00 0.00 0.00 3.82
674 675 3.848272 ATGCCTAAAACAATCCACACG 57.152 42.857 0.00 0.00 0.00 4.49
675 676 1.268352 TGCCTAAAACAATCCACACGC 59.732 47.619 0.00 0.00 0.00 5.34
676 677 1.727857 GCCTAAAACAATCCACACGCG 60.728 52.381 3.53 3.53 0.00 6.01
677 678 1.602191 CTAAAACAATCCACACGCGC 58.398 50.000 5.73 0.00 0.00 6.86
678 679 0.945099 TAAAACAATCCACACGCGCA 59.055 45.000 5.73 0.00 0.00 6.09
679 680 0.317770 AAAACAATCCACACGCGCAG 60.318 50.000 5.73 0.55 0.00 5.18
680 681 1.163420 AAACAATCCACACGCGCAGA 61.163 50.000 5.73 0.00 0.00 4.26
681 682 0.955428 AACAATCCACACGCGCAGAT 60.955 50.000 5.73 0.00 0.00 2.90
682 683 1.349627 CAATCCACACGCGCAGATC 59.650 57.895 5.73 0.00 0.00 2.75
683 684 1.815421 AATCCACACGCGCAGATCC 60.815 57.895 5.73 0.00 0.00 3.36
684 685 2.520465 AATCCACACGCGCAGATCCA 62.520 55.000 5.73 0.00 0.00 3.41
685 686 2.520465 ATCCACACGCGCAGATCCAA 62.520 55.000 5.73 0.00 0.00 3.53
686 687 2.108514 CCACACGCGCAGATCCAAT 61.109 57.895 5.73 0.00 0.00 3.16
687 688 1.061411 CACACGCGCAGATCCAATG 59.939 57.895 5.73 0.00 0.00 2.82
688 689 1.079197 ACACGCGCAGATCCAATGA 60.079 52.632 5.73 0.00 0.00 2.57
689 690 0.462581 ACACGCGCAGATCCAATGAT 60.463 50.000 5.73 0.00 0.00 2.45
690 691 0.234106 CACGCGCAGATCCAATGATC 59.766 55.000 5.73 0.00 46.52 2.92
698 699 2.575805 GATCCAATGATCCCCTCACC 57.424 55.000 0.00 0.00 41.37 4.02
699 700 1.776667 GATCCAATGATCCCCTCACCA 59.223 52.381 0.00 0.00 41.37 4.17
700 701 0.918983 TCCAATGATCCCCTCACCAC 59.081 55.000 0.00 0.00 36.48 4.16
701 702 0.921896 CCAATGATCCCCTCACCACT 59.078 55.000 0.00 0.00 36.48 4.00
702 703 1.285962 CCAATGATCCCCTCACCACTT 59.714 52.381 0.00 0.00 36.48 3.16
703 704 2.509548 CCAATGATCCCCTCACCACTTA 59.490 50.000 0.00 0.00 36.48 2.24
704 705 3.139025 CCAATGATCCCCTCACCACTTAT 59.861 47.826 0.00 0.00 36.48 1.73
705 706 4.139786 CAATGATCCCCTCACCACTTATG 58.860 47.826 0.00 0.00 36.48 1.90
706 707 3.129262 TGATCCCCTCACCACTTATGA 57.871 47.619 0.00 0.00 0.00 2.15
707 708 2.771943 TGATCCCCTCACCACTTATGAC 59.228 50.000 0.00 0.00 0.00 3.06
708 709 1.580059 TCCCCTCACCACTTATGACC 58.420 55.000 0.00 0.00 0.00 4.02
709 710 0.178068 CCCCTCACCACTTATGACCG 59.822 60.000 0.00 0.00 0.00 4.79
710 711 0.462047 CCCTCACCACTTATGACCGC 60.462 60.000 0.00 0.00 0.00 5.68
711 712 0.462047 CCTCACCACTTATGACCGCC 60.462 60.000 0.00 0.00 0.00 6.13
712 713 0.806102 CTCACCACTTATGACCGCCG 60.806 60.000 0.00 0.00 0.00 6.46
713 714 1.813753 CACCACTTATGACCGCCGG 60.814 63.158 0.00 0.00 0.00 6.13
714 715 1.985662 ACCACTTATGACCGCCGGA 60.986 57.895 11.71 0.00 0.00 5.14
715 716 1.227263 CCACTTATGACCGCCGGAG 60.227 63.158 11.71 0.00 0.00 4.63
734 735 2.681778 AGGCACTCTCTGACGGGG 60.682 66.667 0.00 0.00 30.12 5.73
735 736 3.775654 GGCACTCTCTGACGGGGG 61.776 72.222 0.00 0.00 0.00 5.40
736 737 4.459089 GCACTCTCTGACGGGGGC 62.459 72.222 0.00 0.00 0.00 5.80
737 738 4.135153 CACTCTCTGACGGGGGCG 62.135 72.222 0.00 0.00 0.00 6.13
752 753 2.731374 GCGGAGGCTAGATCGCTT 59.269 61.111 13.93 0.00 44.10 4.68
753 754 1.068250 GCGGAGGCTAGATCGCTTT 59.932 57.895 13.93 0.00 44.10 3.51
754 755 0.530870 GCGGAGGCTAGATCGCTTTT 60.531 55.000 13.93 0.00 44.10 2.27
755 756 1.492720 CGGAGGCTAGATCGCTTTTC 58.507 55.000 0.00 0.00 0.00 2.29
756 757 1.067821 CGGAGGCTAGATCGCTTTTCT 59.932 52.381 0.00 0.00 0.00 2.52
757 758 2.482142 CGGAGGCTAGATCGCTTTTCTT 60.482 50.000 0.00 0.00 0.00 2.52
758 759 3.536570 GGAGGCTAGATCGCTTTTCTTT 58.463 45.455 0.00 0.00 0.00 2.52
759 760 3.558006 GGAGGCTAGATCGCTTTTCTTTC 59.442 47.826 0.00 0.00 0.00 2.62
760 761 4.438148 GAGGCTAGATCGCTTTTCTTTCT 58.562 43.478 0.00 0.00 0.00 2.52
761 762 4.187694 AGGCTAGATCGCTTTTCTTTCTG 58.812 43.478 0.00 0.00 0.00 3.02
762 763 3.242576 GGCTAGATCGCTTTTCTTTCTGC 60.243 47.826 0.00 0.00 0.00 4.26
763 764 3.242576 GCTAGATCGCTTTTCTTTCTGCC 60.243 47.826 0.00 0.00 0.00 4.85
764 765 2.783135 AGATCGCTTTTCTTTCTGCCA 58.217 42.857 0.00 0.00 0.00 4.92
765 766 3.149196 AGATCGCTTTTCTTTCTGCCAA 58.851 40.909 0.00 0.00 0.00 4.52
766 767 3.569701 AGATCGCTTTTCTTTCTGCCAAA 59.430 39.130 0.00 0.00 0.00 3.28
767 768 3.354089 TCGCTTTTCTTTCTGCCAAAG 57.646 42.857 0.00 0.00 0.00 2.77
768 769 2.948979 TCGCTTTTCTTTCTGCCAAAGA 59.051 40.909 4.25 4.25 34.73 2.52
769 770 3.380004 TCGCTTTTCTTTCTGCCAAAGAA 59.620 39.130 13.92 13.92 43.37 2.52
780 781 3.068024 TCTGCCAAAGAAAACGATTTGCT 59.932 39.130 0.00 0.00 35.53 3.91
808 809 0.807667 CTTGCTCCATCTCCGTTCGG 60.808 60.000 4.74 4.74 0.00 4.30
809 810 1.541310 TTGCTCCATCTCCGTTCGGT 61.541 55.000 11.04 0.00 0.00 4.69
838 839 3.113745 CACTCCATGGCCATTCGC 58.886 61.111 17.92 0.00 0.00 4.70
867 880 1.225855 CTCGCTGCAAGTGTGGTTTA 58.774 50.000 0.00 0.00 46.69 2.01
899 912 3.774282 TTCGTTTACGGACATTCGTTG 57.226 42.857 2.09 0.00 43.59 4.10
912 925 1.500512 TTCGTTGTTTCCGCCTTCCG 61.501 55.000 0.00 0.00 0.00 4.30
951 964 1.388547 GAACACTTTCACACTGGGCA 58.611 50.000 0.00 0.00 0.00 5.36
1342 1371 2.543637 TCCCCTCCCCCTTCTCCT 60.544 66.667 0.00 0.00 0.00 3.69
1427 1458 7.391554 TGAATAGTGGAATTGCATATCTTAGGC 59.608 37.037 1.94 0.00 35.76 3.93
1430 1461 3.181445 TGGAATTGCATATCTTAGGCCGT 60.181 43.478 0.00 0.00 33.95 5.68
1490 1531 3.770046 ACCCCTAATTTTAGCGTTTGGT 58.230 40.909 0.00 0.00 0.00 3.67
1637 1713 6.118170 ACACTTATAGCTGCTGATTTGATGT 58.882 36.000 13.43 5.32 0.00 3.06
2848 2934 5.288804 TGTGAGCCAAGCAAAGATTTAAAC 58.711 37.500 0.00 0.00 0.00 2.01
3272 3369 9.994432 CTGTTTTTATCAAGACCAGATTATGAC 57.006 33.333 0.00 0.00 0.00 3.06
3415 3512 5.642063 CGTAGGACTTAAGGCTCAAATTTGA 59.358 40.000 19.45 19.45 35.57 2.69
3492 3589 6.039493 TGGAGTACCGAATAAGATTCTCAGAC 59.961 42.308 0.00 0.00 39.42 3.51
3497 3594 6.334202 ACCGAATAAGATTCTCAGACTCAAC 58.666 40.000 0.00 0.00 0.00 3.18
3562 3659 4.340097 CCTTTTGTTTAAGAAAGACCCGGT 59.660 41.667 0.00 0.00 35.41 5.28
3636 3734 6.945435 TGTTATGCATCCTCTACTTTGGAAAA 59.055 34.615 0.19 0.00 35.81 2.29
3749 3847 8.573035 TGCATCAGTTATGTATACGTTCATCTA 58.427 33.333 2.23 0.00 37.93 1.98
3767 3865 5.693555 TCATCTATTTGATAAGCACTGCGAG 59.306 40.000 0.00 0.00 33.36 5.03
3809 3907 3.301274 ACTGAGGGACACTAATAGAGGC 58.699 50.000 0.00 0.00 0.00 4.70
3829 3927 1.673168 GATCTGGACACAGGATTGGC 58.327 55.000 0.00 0.00 44.99 4.52
3838 5759 3.614092 ACACAGGATTGGCAGATAAGTG 58.386 45.455 9.05 9.05 0.00 3.16
3897 5818 3.327757 AGAAGCCTGACACATAGTTTCCA 59.672 43.478 0.00 0.00 0.00 3.53
3898 5819 3.340814 AGCCTGACACATAGTTTCCAG 57.659 47.619 0.00 0.00 0.00 3.86
3899 5820 2.639839 AGCCTGACACATAGTTTCCAGT 59.360 45.455 0.00 0.00 0.00 4.00
3900 5821 3.073062 AGCCTGACACATAGTTTCCAGTT 59.927 43.478 0.00 0.00 0.00 3.16
3901 5822 3.821033 GCCTGACACATAGTTTCCAGTTT 59.179 43.478 0.00 0.00 0.00 2.66
3902 5823 4.083271 GCCTGACACATAGTTTCCAGTTTC 60.083 45.833 0.00 0.00 0.00 2.78
3903 5824 4.455877 CCTGACACATAGTTTCCAGTTTCC 59.544 45.833 0.00 0.00 0.00 3.13
3970 5891 9.334693 GTCTAAAAACTAGCATGATGAAACTTG 57.665 33.333 0.00 0.00 0.00 3.16
4011 5932 6.954944 TCAAGAATGAACTTTTAGAACGTGG 58.045 36.000 0.00 0.00 30.99 4.94
4083 6004 2.673775 TTCAAGGGTTGAAGGCATCA 57.326 45.000 0.00 0.00 44.21 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.114616 CACACGCGCTGGAGGAAG 61.115 66.667 5.73 0.00 0.00 3.46
30 31 3.268603 TTGGTCACGCAGCACACG 61.269 61.111 0.00 0.00 30.04 4.49
31 32 2.327940 GTTGGTCACGCAGCACAC 59.672 61.111 0.00 0.00 30.04 3.82
32 33 2.124942 TGTTGGTCACGCAGCACA 60.125 55.556 0.00 0.00 30.04 4.57
33 34 2.327940 GTGTTGGTCACGCAGCAC 59.672 61.111 0.00 0.00 37.31 4.40
66 67 3.295228 CTTGGACTTCGCGTTGCCG 62.295 63.158 5.77 0.00 37.07 5.69
67 68 1.959226 TCTTGGACTTCGCGTTGCC 60.959 57.895 5.77 4.50 0.00 4.52
68 69 1.204312 GTCTTGGACTTCGCGTTGC 59.796 57.895 5.77 0.00 0.00 4.17
69 70 1.487231 CGTCTTGGACTTCGCGTTG 59.513 57.895 5.77 2.39 0.00 4.10
70 71 1.663702 CCGTCTTGGACTTCGCGTT 60.664 57.895 5.77 0.00 42.00 4.84
71 72 2.049433 CCGTCTTGGACTTCGCGT 60.049 61.111 5.77 0.00 42.00 6.01
72 73 2.203972 TACCCGTCTTGGACTTCGCG 62.204 60.000 0.00 0.00 42.00 5.87
73 74 0.735287 GTACCCGTCTTGGACTTCGC 60.735 60.000 0.00 0.00 42.00 4.70
74 75 0.108945 GGTACCCGTCTTGGACTTCG 60.109 60.000 0.00 0.00 42.00 3.79
75 76 0.108945 CGGTACCCGTCTTGGACTTC 60.109 60.000 6.25 0.00 42.73 3.01
76 77 1.969862 CGGTACCCGTCTTGGACTT 59.030 57.895 6.25 0.00 42.73 3.01
77 78 3.690745 CGGTACCCGTCTTGGACT 58.309 61.111 6.25 0.00 42.73 3.85
156 157 4.364409 GTTGGTGTCGCGAACGGC 62.364 66.667 12.06 0.00 46.48 5.68
157 158 3.708734 GGTTGGTGTCGCGAACGG 61.709 66.667 12.06 0.00 40.63 4.44
158 159 3.708734 GGGTTGGTGTCGCGAACG 61.709 66.667 12.06 0.00 36.78 3.95
159 160 3.708734 CGGGTTGGTGTCGCGAAC 61.709 66.667 12.06 11.64 42.30 3.95
176 177 4.383602 ACATCGTTGTTGCCGCGC 62.384 61.111 0.00 0.00 29.55 6.86
177 178 2.202171 GACATCGTTGTTGCCGCG 60.202 61.111 0.00 0.00 35.79 6.46
178 179 2.202171 CGACATCGTTGTTGCCGC 60.202 61.111 0.00 0.00 35.79 6.53
182 183 0.110238 CCTTGGCGACATCGTTGTTG 60.110 55.000 9.17 9.17 42.32 3.33
183 184 0.534203 ACCTTGGCGACATCGTTGTT 60.534 50.000 0.00 0.00 42.32 2.83
184 185 1.070786 ACCTTGGCGACATCGTTGT 59.929 52.632 0.00 0.00 42.32 3.32
185 186 1.497278 CACCTTGGCGACATCGTTG 59.503 57.895 0.00 0.00 42.32 4.10
186 187 1.671054 CCACCTTGGCGACATCGTT 60.671 57.895 0.00 0.00 42.32 3.85
187 188 2.047274 CCACCTTGGCGACATCGT 60.047 61.111 0.00 0.00 42.32 3.73
188 189 2.047274 ACCACCTTGGCGACATCG 60.047 61.111 0.00 0.00 42.67 3.84
189 190 1.745489 GGACCACCTTGGCGACATC 60.745 63.158 0.00 0.00 42.67 3.06
190 191 2.351276 GGACCACCTTGGCGACAT 59.649 61.111 0.00 0.00 42.67 3.06
191 192 3.164977 TGGACCACCTTGGCGACA 61.165 61.111 0.00 0.00 42.67 4.35
192 193 2.668550 GTGGACCACCTTGGCGAC 60.669 66.667 14.16 0.00 42.67 5.19
193 194 3.164977 TGTGGACCACCTTGGCGA 61.165 61.111 22.00 0.00 42.67 5.54
194 195 2.669569 CTGTGGACCACCTTGGCG 60.670 66.667 22.00 0.02 42.67 5.69
195 196 1.302832 CTCTGTGGACCACCTTGGC 60.303 63.158 22.00 0.00 42.67 4.52
196 197 1.302832 GCTCTGTGGACCACCTTGG 60.303 63.158 22.00 10.29 45.02 3.61
197 198 1.669115 CGCTCTGTGGACCACCTTG 60.669 63.158 22.00 11.90 37.04 3.61
198 199 2.743718 CGCTCTGTGGACCACCTT 59.256 61.111 22.00 0.00 37.04 3.50
199 200 3.314331 CCGCTCTGTGGACCACCT 61.314 66.667 22.00 0.00 34.74 4.00
246 247 4.194720 CTCGTCCTCCTTCGCCGG 62.195 72.222 0.00 0.00 0.00 6.13
247 248 3.398353 GACTCGTCCTCCTTCGCCG 62.398 68.421 0.00 0.00 0.00 6.46
248 249 2.490685 GACTCGTCCTCCTTCGCC 59.509 66.667 0.00 0.00 0.00 5.54
249 250 2.100603 CGACTCGTCCTCCTTCGC 59.899 66.667 0.00 0.00 0.00 4.70
250 251 1.979831 GACCGACTCGTCCTCCTTCG 61.980 65.000 0.00 0.00 0.00 3.79
251 252 0.677414 AGACCGACTCGTCCTCCTTC 60.677 60.000 0.00 0.00 32.91 3.46
252 253 0.961358 CAGACCGACTCGTCCTCCTT 60.961 60.000 0.00 0.00 32.91 3.36
253 254 1.377463 CAGACCGACTCGTCCTCCT 60.377 63.158 0.00 0.00 32.91 3.69
254 255 3.053849 GCAGACCGACTCGTCCTCC 62.054 68.421 0.00 0.00 32.91 4.30
255 256 1.984321 GAGCAGACCGACTCGTCCTC 61.984 65.000 0.00 0.00 32.91 3.71
256 257 2.034376 AGCAGACCGACTCGTCCT 59.966 61.111 0.00 0.00 32.91 3.85
257 258 2.486042 GAGCAGACCGACTCGTCC 59.514 66.667 0.00 0.00 32.91 4.79
258 259 2.486042 GGAGCAGACCGACTCGTC 59.514 66.667 0.00 0.00 33.55 4.20
266 267 2.750637 TCCTCGTCGGAGCAGACC 60.751 66.667 0.00 0.00 39.06 3.85
273 274 0.612229 AGACTGTACTCCTCGTCGGA 59.388 55.000 0.00 0.00 40.30 4.55
274 275 0.727970 CAGACTGTACTCCTCGTCGG 59.272 60.000 0.00 0.00 0.00 4.79
275 276 0.097325 GCAGACTGTACTCCTCGTCG 59.903 60.000 3.99 0.00 0.00 5.12
276 277 1.399089 GAGCAGACTGTACTCCTCGTC 59.601 57.143 3.99 0.00 0.00 4.20
277 278 1.455248 GAGCAGACTGTACTCCTCGT 58.545 55.000 3.99 0.00 0.00 4.18
278 279 0.736053 GGAGCAGACTGTACTCCTCG 59.264 60.000 17.45 0.00 45.44 4.63
279 280 0.736053 CGGAGCAGACTGTACTCCTC 59.264 60.000 20.49 11.33 46.49 3.71
280 281 0.038455 ACGGAGCAGACTGTACTCCT 59.962 55.000 20.49 9.79 46.49 3.69
281 282 0.452585 GACGGAGCAGACTGTACTCC 59.547 60.000 15.62 15.62 45.44 3.85
282 283 0.097325 CGACGGAGCAGACTGTACTC 59.903 60.000 3.99 3.06 0.00 2.59
283 284 1.306642 CCGACGGAGCAGACTGTACT 61.307 60.000 8.64 0.00 0.00 2.73
284 285 1.136984 CCGACGGAGCAGACTGTAC 59.863 63.158 8.64 0.00 0.00 2.90
285 286 2.697761 GCCGACGGAGCAGACTGTA 61.698 63.158 20.50 0.00 0.00 2.74
286 287 4.057428 GCCGACGGAGCAGACTGT 62.057 66.667 20.50 0.00 0.00 3.55
294 295 3.740397 TACACCACGCCGACGGAG 61.740 66.667 20.50 18.44 46.04 4.63
295 296 4.041917 GTACACCACGCCGACGGA 62.042 66.667 20.50 0.00 46.04 4.69
296 297 3.562779 AAGTACACCACGCCGACGG 62.563 63.158 10.29 10.29 46.04 4.79
298 299 1.300388 ACAAGTACACCACGCCGAC 60.300 57.895 0.00 0.00 0.00 4.79
299 300 1.300311 CACAAGTACACCACGCCGA 60.300 57.895 0.00 0.00 0.00 5.54
300 301 2.950172 GCACAAGTACACCACGCCG 61.950 63.158 0.00 0.00 0.00 6.46
301 302 2.943653 GCACAAGTACACCACGCC 59.056 61.111 0.00 0.00 0.00 5.68
302 303 1.886861 CTCGCACAAGTACACCACGC 61.887 60.000 0.00 0.00 0.00 5.34
303 304 0.318360 TCTCGCACAAGTACACCACG 60.318 55.000 0.00 0.00 0.00 4.94
304 305 1.726791 CATCTCGCACAAGTACACCAC 59.273 52.381 0.00 0.00 0.00 4.16
305 306 1.343142 ACATCTCGCACAAGTACACCA 59.657 47.619 0.00 0.00 0.00 4.17
306 307 1.726791 CACATCTCGCACAAGTACACC 59.273 52.381 0.00 0.00 0.00 4.16
307 308 1.126846 GCACATCTCGCACAAGTACAC 59.873 52.381 0.00 0.00 0.00 2.90
308 309 1.428448 GCACATCTCGCACAAGTACA 58.572 50.000 0.00 0.00 0.00 2.90
309 310 0.721718 GGCACATCTCGCACAAGTAC 59.278 55.000 0.00 0.00 0.00 2.73
310 311 0.735978 CGGCACATCTCGCACAAGTA 60.736 55.000 0.00 0.00 0.00 2.24
311 312 2.029288 CGGCACATCTCGCACAAGT 61.029 57.895 0.00 0.00 0.00 3.16
312 313 2.780643 CGGCACATCTCGCACAAG 59.219 61.111 0.00 0.00 0.00 3.16
318 319 1.298157 TTTTCCTGCGGCACATCTCG 61.298 55.000 0.00 0.00 0.00 4.04
319 320 0.449388 CTTTTCCTGCGGCACATCTC 59.551 55.000 0.00 0.00 0.00 2.75
320 321 0.036732 TCTTTTCCTGCGGCACATCT 59.963 50.000 0.00 0.00 0.00 2.90
321 322 0.449388 CTCTTTTCCTGCGGCACATC 59.551 55.000 0.00 0.00 0.00 3.06
322 323 0.962356 CCTCTTTTCCTGCGGCACAT 60.962 55.000 0.00 0.00 0.00 3.21
323 324 1.600636 CCTCTTTTCCTGCGGCACA 60.601 57.895 0.00 0.00 0.00 4.57
324 325 1.301677 CTCCTCTTTTCCTGCGGCAC 61.302 60.000 0.00 0.00 0.00 5.01
325 326 1.003355 CTCCTCTTTTCCTGCGGCA 60.003 57.895 1.29 1.29 0.00 5.69
326 327 0.742635 CTCTCCTCTTTTCCTGCGGC 60.743 60.000 0.00 0.00 0.00 6.53
327 328 0.898320 TCTCTCCTCTTTTCCTGCGG 59.102 55.000 0.00 0.00 0.00 5.69
328 329 1.821753 TCTCTCTCCTCTTTTCCTGCG 59.178 52.381 0.00 0.00 0.00 5.18
329 330 2.831526 ACTCTCTCTCCTCTTTTCCTGC 59.168 50.000 0.00 0.00 0.00 4.85
330 331 4.085733 TCACTCTCTCTCCTCTTTTCCTG 58.914 47.826 0.00 0.00 0.00 3.86
331 332 4.344104 CTCACTCTCTCTCCTCTTTTCCT 58.656 47.826 0.00 0.00 0.00 3.36
332 333 3.447229 CCTCACTCTCTCTCCTCTTTTCC 59.553 52.174 0.00 0.00 0.00 3.13
333 334 4.340617 TCCTCACTCTCTCTCCTCTTTTC 58.659 47.826 0.00 0.00 0.00 2.29
334 335 4.044065 TCTCCTCACTCTCTCTCCTCTTTT 59.956 45.833 0.00 0.00 0.00 2.27
335 336 3.591527 TCTCCTCACTCTCTCTCCTCTTT 59.408 47.826 0.00 0.00 0.00 2.52
336 337 3.189606 TCTCCTCACTCTCTCTCCTCTT 58.810 50.000 0.00 0.00 0.00 2.85
337 338 2.774234 CTCTCCTCACTCTCTCTCCTCT 59.226 54.545 0.00 0.00 0.00 3.69
338 339 2.771943 TCTCTCCTCACTCTCTCTCCTC 59.228 54.545 0.00 0.00 0.00 3.71
339 340 2.774234 CTCTCTCCTCACTCTCTCTCCT 59.226 54.545 0.00 0.00 0.00 3.69
340 341 2.158755 CCTCTCTCCTCACTCTCTCTCC 60.159 59.091 0.00 0.00 0.00 3.71
341 342 2.746472 GCCTCTCTCCTCACTCTCTCTC 60.746 59.091 0.00 0.00 0.00 3.20
342 343 1.212935 GCCTCTCTCCTCACTCTCTCT 59.787 57.143 0.00 0.00 0.00 3.10
343 344 1.212935 AGCCTCTCTCCTCACTCTCTC 59.787 57.143 0.00 0.00 0.00 3.20
344 345 1.064463 CAGCCTCTCTCCTCACTCTCT 60.064 57.143 0.00 0.00 0.00 3.10
345 346 1.392589 CAGCCTCTCTCCTCACTCTC 58.607 60.000 0.00 0.00 0.00 3.20
346 347 0.684153 GCAGCCTCTCTCCTCACTCT 60.684 60.000 0.00 0.00 0.00 3.24
347 348 1.815866 GCAGCCTCTCTCCTCACTC 59.184 63.158 0.00 0.00 0.00 3.51
348 349 2.051518 CGCAGCCTCTCTCCTCACT 61.052 63.158 0.00 0.00 0.00 3.41
349 350 2.003658 CTCGCAGCCTCTCTCCTCAC 62.004 65.000 0.00 0.00 0.00 3.51
350 351 1.752310 CTCGCAGCCTCTCTCCTCA 60.752 63.158 0.00 0.00 0.00 3.86
351 352 2.489275 CCTCGCAGCCTCTCTCCTC 61.489 68.421 0.00 0.00 0.00 3.71
352 353 2.441901 CCTCGCAGCCTCTCTCCT 60.442 66.667 0.00 0.00 0.00 3.69
353 354 1.608717 TTTCCTCGCAGCCTCTCTCC 61.609 60.000 0.00 0.00 0.00 3.71
354 355 0.247736 TTTTCCTCGCAGCCTCTCTC 59.752 55.000 0.00 0.00 0.00 3.20
355 356 0.248843 CTTTTCCTCGCAGCCTCTCT 59.751 55.000 0.00 0.00 0.00 3.10
356 357 0.247736 TCTTTTCCTCGCAGCCTCTC 59.752 55.000 0.00 0.00 0.00 3.20
357 358 0.248843 CTCTTTTCCTCGCAGCCTCT 59.751 55.000 0.00 0.00 0.00 3.69
358 359 0.742635 CCTCTTTTCCTCGCAGCCTC 60.743 60.000 0.00 0.00 0.00 4.70
359 360 1.194781 TCCTCTTTTCCTCGCAGCCT 61.195 55.000 0.00 0.00 0.00 4.58
360 361 0.321653 TTCCTCTTTTCCTCGCAGCC 60.322 55.000 0.00 0.00 0.00 4.85
361 362 1.466558 CTTTCCTCTTTTCCTCGCAGC 59.533 52.381 0.00 0.00 0.00 5.25
362 363 2.999355 CTCTTTCCTCTTTTCCTCGCAG 59.001 50.000 0.00 0.00 0.00 5.18
363 364 2.632996 TCTCTTTCCTCTTTTCCTCGCA 59.367 45.455 0.00 0.00 0.00 5.10
364 365 3.258228 CTCTCTTTCCTCTTTTCCTCGC 58.742 50.000 0.00 0.00 0.00 5.03
365 366 4.021894 TCACTCTCTTTCCTCTTTTCCTCG 60.022 45.833 0.00 0.00 0.00 4.63
366 367 5.476091 TCACTCTCTTTCCTCTTTTCCTC 57.524 43.478 0.00 0.00 0.00 3.71
367 368 4.285775 CCTCACTCTCTTTCCTCTTTTCCT 59.714 45.833 0.00 0.00 0.00 3.36
368 369 4.284746 TCCTCACTCTCTTTCCTCTTTTCC 59.715 45.833 0.00 0.00 0.00 3.13
369 370 5.245075 TCTCCTCACTCTCTTTCCTCTTTTC 59.755 44.000 0.00 0.00 0.00 2.29
370 371 5.151454 TCTCCTCACTCTCTTTCCTCTTTT 58.849 41.667 0.00 0.00 0.00 2.27
371 372 4.746466 TCTCCTCACTCTCTTTCCTCTTT 58.254 43.478 0.00 0.00 0.00 2.52
372 373 4.044065 TCTCTCCTCACTCTCTTTCCTCTT 59.956 45.833 0.00 0.00 0.00 2.85
373 374 3.591527 TCTCTCCTCACTCTCTTTCCTCT 59.408 47.826 0.00 0.00 0.00 3.69
374 375 3.947834 CTCTCTCCTCACTCTCTTTCCTC 59.052 52.174 0.00 0.00 0.00 3.71
375 376 3.309121 CCTCTCTCCTCACTCTCTTTCCT 60.309 52.174 0.00 0.00 0.00 3.36
376 377 3.023832 CCTCTCTCCTCACTCTCTTTCC 58.976 54.545 0.00 0.00 0.00 3.13
377 378 2.427095 GCCTCTCTCCTCACTCTCTTTC 59.573 54.545 0.00 0.00 0.00 2.62
378 379 2.042979 AGCCTCTCTCCTCACTCTCTTT 59.957 50.000 0.00 0.00 0.00 2.52
379 380 1.640670 AGCCTCTCTCCTCACTCTCTT 59.359 52.381 0.00 0.00 0.00 2.85
380 381 1.064463 CAGCCTCTCTCCTCACTCTCT 60.064 57.143 0.00 0.00 0.00 3.10
381 382 1.340991 ACAGCCTCTCTCCTCACTCTC 60.341 57.143 0.00 0.00 0.00 3.20
382 383 0.704076 ACAGCCTCTCTCCTCACTCT 59.296 55.000 0.00 0.00 0.00 3.24
383 384 0.817013 CACAGCCTCTCTCCTCACTC 59.183 60.000 0.00 0.00 0.00 3.51
384 385 0.407528 TCACAGCCTCTCTCCTCACT 59.592 55.000 0.00 0.00 0.00 3.41
385 386 0.817013 CTCACAGCCTCTCTCCTCAC 59.183 60.000 0.00 0.00 0.00 3.51
386 387 0.324183 CCTCACAGCCTCTCTCCTCA 60.324 60.000 0.00 0.00 0.00 3.86
387 388 0.033601 TCCTCACAGCCTCTCTCCTC 60.034 60.000 0.00 0.00 0.00 3.71
388 389 0.411452 TTCCTCACAGCCTCTCTCCT 59.589 55.000 0.00 0.00 0.00 3.69
389 390 1.270907 TTTCCTCACAGCCTCTCTCC 58.729 55.000 0.00 0.00 0.00 3.71
390 391 2.564947 TCTTTTCCTCACAGCCTCTCTC 59.435 50.000 0.00 0.00 0.00 3.20
391 392 2.566724 CTCTTTTCCTCACAGCCTCTCT 59.433 50.000 0.00 0.00 0.00 3.10
392 393 2.354604 CCTCTTTTCCTCACAGCCTCTC 60.355 54.545 0.00 0.00 0.00 3.20
393 394 1.627834 CCTCTTTTCCTCACAGCCTCT 59.372 52.381 0.00 0.00 0.00 3.69
394 395 1.625818 TCCTCTTTTCCTCACAGCCTC 59.374 52.381 0.00 0.00 0.00 4.70
395 396 1.627834 CTCCTCTTTTCCTCACAGCCT 59.372 52.381 0.00 0.00 0.00 4.58
396 397 1.625818 TCTCCTCTTTTCCTCACAGCC 59.374 52.381 0.00 0.00 0.00 4.85
397 398 2.564947 TCTCTCCTCTTTTCCTCACAGC 59.435 50.000 0.00 0.00 0.00 4.40
398 399 4.085733 TCTCTCTCCTCTTTTCCTCACAG 58.914 47.826 0.00 0.00 0.00 3.66
399 400 4.085733 CTCTCTCTCCTCTTTTCCTCACA 58.914 47.826 0.00 0.00 0.00 3.58
400 401 4.082245 CACTCTCTCTCCTCTTTTCCTCAC 60.082 50.000 0.00 0.00 0.00 3.51
401 402 4.085733 CACTCTCTCTCCTCTTTTCCTCA 58.914 47.826 0.00 0.00 0.00 3.86
402 403 4.340617 TCACTCTCTCTCCTCTTTTCCTC 58.659 47.826 0.00 0.00 0.00 3.71
403 404 4.344104 CTCACTCTCTCTCCTCTTTTCCT 58.656 47.826 0.00 0.00 0.00 3.36
404 405 3.447229 CCTCACTCTCTCTCCTCTTTTCC 59.553 52.174 0.00 0.00 0.00 3.13
405 406 4.340617 TCCTCACTCTCTCTCCTCTTTTC 58.659 47.826 0.00 0.00 0.00 2.29
406 407 4.044065 TCTCCTCACTCTCTCTCCTCTTTT 59.956 45.833 0.00 0.00 0.00 2.27
407 408 3.591527 TCTCCTCACTCTCTCTCCTCTTT 59.408 47.826 0.00 0.00 0.00 2.52
408 409 3.189606 TCTCCTCACTCTCTCTCCTCTT 58.810 50.000 0.00 0.00 0.00 2.85
409 410 2.774234 CTCTCCTCACTCTCTCTCCTCT 59.226 54.545 0.00 0.00 0.00 3.69
410 411 2.771943 TCTCTCCTCACTCTCTCTCCTC 59.228 54.545 0.00 0.00 0.00 3.71
411 412 2.774234 CTCTCTCCTCACTCTCTCTCCT 59.226 54.545 0.00 0.00 0.00 3.69
412 413 2.158755 CCTCTCTCCTCACTCTCTCTCC 60.159 59.091 0.00 0.00 0.00 3.71
413 414 2.746472 GCCTCTCTCCTCACTCTCTCTC 60.746 59.091 0.00 0.00 0.00 3.20
414 415 1.212935 GCCTCTCTCCTCACTCTCTCT 59.787 57.143 0.00 0.00 0.00 3.10
415 416 1.212935 AGCCTCTCTCCTCACTCTCTC 59.787 57.143 0.00 0.00 0.00 3.20
416 417 1.064463 CAGCCTCTCTCCTCACTCTCT 60.064 57.143 0.00 0.00 0.00 3.10
417 418 1.064758 TCAGCCTCTCTCCTCACTCTC 60.065 57.143 0.00 0.00 0.00 3.20
418 419 0.998928 TCAGCCTCTCTCCTCACTCT 59.001 55.000 0.00 0.00 0.00 3.24
419 420 1.102978 GTCAGCCTCTCTCCTCACTC 58.897 60.000 0.00 0.00 0.00 3.51
420 421 0.704076 AGTCAGCCTCTCTCCTCACT 59.296 55.000 0.00 0.00 0.00 3.41
421 422 1.204467 CAAGTCAGCCTCTCTCCTCAC 59.796 57.143 0.00 0.00 0.00 3.51
422 423 1.203112 ACAAGTCAGCCTCTCTCCTCA 60.203 52.381 0.00 0.00 0.00 3.86
423 424 1.204467 CACAAGTCAGCCTCTCTCCTC 59.796 57.143 0.00 0.00 0.00 3.71
424 425 1.265236 CACAAGTCAGCCTCTCTCCT 58.735 55.000 0.00 0.00 0.00 3.69
425 426 0.248843 CCACAAGTCAGCCTCTCTCC 59.751 60.000 0.00 0.00 0.00 3.71
426 427 0.248843 CCCACAAGTCAGCCTCTCTC 59.751 60.000 0.00 0.00 0.00 3.20
427 428 1.197430 CCCCACAAGTCAGCCTCTCT 61.197 60.000 0.00 0.00 0.00 3.10
428 429 1.298014 CCCCACAAGTCAGCCTCTC 59.702 63.158 0.00 0.00 0.00 3.20
429 430 2.227036 CCCCCACAAGTCAGCCTCT 61.227 63.158 0.00 0.00 0.00 3.69
430 431 2.069165 AACCCCCACAAGTCAGCCTC 62.069 60.000 0.00 0.00 0.00 4.70
431 432 1.655114 AAACCCCCACAAGTCAGCCT 61.655 55.000 0.00 0.00 0.00 4.58
432 433 0.759060 AAAACCCCCACAAGTCAGCC 60.759 55.000 0.00 0.00 0.00 4.85
433 434 0.389025 CAAAACCCCCACAAGTCAGC 59.611 55.000 0.00 0.00 0.00 4.26
434 435 0.389025 GCAAAACCCCCACAAGTCAG 59.611 55.000 0.00 0.00 0.00 3.51
435 436 0.324738 TGCAAAACCCCCACAAGTCA 60.325 50.000 0.00 0.00 0.00 3.41
436 437 1.047801 ATGCAAAACCCCCACAAGTC 58.952 50.000 0.00 0.00 0.00 3.01
437 438 0.758123 CATGCAAAACCCCCACAAGT 59.242 50.000 0.00 0.00 0.00 3.16
438 439 0.603439 GCATGCAAAACCCCCACAAG 60.603 55.000 14.21 0.00 0.00 3.16
439 440 1.340399 TGCATGCAAAACCCCCACAA 61.340 50.000 20.30 0.00 0.00 3.33
440 441 1.340399 TTGCATGCAAAACCCCCACA 61.340 50.000 30.19 3.74 32.44 4.17
441 442 0.179034 TTTGCATGCAAAACCCCCAC 60.179 50.000 36.92 0.00 42.16 4.61
442 443 0.548031 TTTTGCATGCAAAACCCCCA 59.452 45.000 40.87 26.00 46.80 4.96
443 444 1.202746 TCTTTTGCATGCAAAACCCCC 60.203 47.619 40.87 4.47 46.80 5.40
444 445 2.145536 CTCTTTTGCATGCAAAACCCC 58.854 47.619 40.87 5.19 46.80 4.95
445 446 3.062042 CTCTCTTTTGCATGCAAAACCC 58.938 45.455 40.87 5.92 46.80 4.11
446 447 2.477754 GCTCTCTTTTGCATGCAAAACC 59.522 45.455 40.87 26.33 46.80 3.27
447 448 2.154389 CGCTCTCTTTTGCATGCAAAAC 59.846 45.455 40.87 31.56 46.80 2.43
449 450 1.931709 GCGCTCTCTTTTGCATGCAAA 60.932 47.619 35.80 35.80 43.23 3.68
450 451 0.387622 GCGCTCTCTTTTGCATGCAA 60.388 50.000 28.80 28.80 0.00 4.08
451 452 1.210931 GCGCTCTCTTTTGCATGCA 59.789 52.632 18.46 18.46 0.00 3.96
452 453 1.515736 GGCGCTCTCTTTTGCATGC 60.516 57.895 11.82 11.82 0.00 4.06
453 454 1.226211 CGGCGCTCTCTTTTGCATG 60.226 57.895 7.64 0.00 0.00 4.06
454 455 1.375908 TCGGCGCTCTCTTTTGCAT 60.376 52.632 7.64 0.00 0.00 3.96
455 456 2.030412 TCGGCGCTCTCTTTTGCA 59.970 55.556 7.64 0.00 0.00 4.08
456 457 2.476499 GTCGGCGCTCTCTTTTGC 59.524 61.111 7.64 0.00 0.00 3.68
457 458 2.772189 CGTCGGCGCTCTCTTTTG 59.228 61.111 7.64 0.00 0.00 2.44
482 483 3.437795 CAGAAAGCTGGGCGGCAG 61.438 66.667 12.47 7.70 38.51 4.85
490 491 1.069049 CAACCCAAACCCAGAAAGCTG 59.931 52.381 0.00 0.00 41.93 4.24
491 492 1.413118 CAACCCAAACCCAGAAAGCT 58.587 50.000 0.00 0.00 0.00 3.74
492 493 0.392706 CCAACCCAAACCCAGAAAGC 59.607 55.000 0.00 0.00 0.00 3.51
493 494 1.047801 CCCAACCCAAACCCAGAAAG 58.952 55.000 0.00 0.00 0.00 2.62
494 495 0.637195 TCCCAACCCAAACCCAGAAA 59.363 50.000 0.00 0.00 0.00 2.52
495 496 0.105913 GTCCCAACCCAAACCCAGAA 60.106 55.000 0.00 0.00 0.00 3.02
496 497 1.539665 GTCCCAACCCAAACCCAGA 59.460 57.895 0.00 0.00 0.00 3.86
497 498 1.533033 GGTCCCAACCCAAACCCAG 60.533 63.158 0.00 0.00 39.93 4.45
498 499 2.609920 GGTCCCAACCCAAACCCA 59.390 61.111 0.00 0.00 39.93 4.51
499 500 2.599281 CGGTCCCAACCCAAACCC 60.599 66.667 0.00 0.00 43.21 4.11
500 501 3.299977 GCGGTCCCAACCCAAACC 61.300 66.667 0.00 0.00 43.21 3.27
501 502 3.299977 GGCGGTCCCAACCCAAAC 61.300 66.667 0.00 0.00 43.21 2.93
502 503 4.958897 CGGCGGTCCCAACCCAAA 62.959 66.667 0.00 0.00 43.21 3.28
505 506 4.765449 GTACGGCGGTCCCAACCC 62.765 72.222 13.24 0.00 43.21 4.11
507 508 2.485188 TTACGTACGGCGGTCCCAAC 62.485 60.000 21.06 0.00 46.52 3.77
508 509 1.603236 ATTACGTACGGCGGTCCCAA 61.603 55.000 21.06 0.00 46.52 4.12
509 510 1.603236 AATTACGTACGGCGGTCCCA 61.603 55.000 21.06 0.00 46.52 4.37
510 511 0.460109 AAATTACGTACGGCGGTCCC 60.460 55.000 21.06 0.00 46.52 4.46
511 512 1.060986 CAAAATTACGTACGGCGGTCC 59.939 52.381 21.06 0.00 46.52 4.46
512 513 1.060986 CCAAAATTACGTACGGCGGTC 59.939 52.381 21.06 2.30 46.52 4.79
513 514 1.077915 CCAAAATTACGTACGGCGGT 58.922 50.000 21.06 1.39 46.52 5.68
514 515 0.247775 GCCAAAATTACGTACGGCGG 60.248 55.000 21.06 9.46 46.52 6.13
515 516 6.952795 ATTTGGCCAAAATTACGTACGGCG 62.953 45.833 33.43 4.80 39.98 6.46
516 517 0.803740 TGGCCAAAATTACGTACGGC 59.196 50.000 21.06 10.17 38.85 5.68
517 518 3.555917 TTTGGCCAAAATTACGTACGG 57.444 42.857 28.57 1.43 0.00 4.02
518 519 4.099824 GGATTTGGCCAAAATTACGTACG 58.900 43.478 33.43 15.01 38.64 3.67
519 520 4.099824 CGGATTTGGCCAAAATTACGTAC 58.900 43.478 33.43 16.42 38.64 3.67
520 521 3.128938 CCGGATTTGGCCAAAATTACGTA 59.871 43.478 33.43 10.00 38.64 3.57
521 522 2.094442 CCGGATTTGGCCAAAATTACGT 60.094 45.455 33.43 17.01 38.64 3.57
522 523 2.535331 CCGGATTTGGCCAAAATTACG 58.465 47.619 33.43 28.09 38.64 3.18
533 534 1.021202 TCAAATAGCGCCGGATTTGG 58.979 50.000 26.71 15.58 41.40 3.28
534 535 2.097466 AGTTCAAATAGCGCCGGATTTG 59.903 45.455 23.80 23.80 42.09 2.32
535 536 2.365582 AGTTCAAATAGCGCCGGATTT 58.634 42.857 5.05 5.16 0.00 2.17
536 537 2.038387 AGTTCAAATAGCGCCGGATT 57.962 45.000 5.05 0.00 0.00 3.01
537 538 2.038387 AAGTTCAAATAGCGCCGGAT 57.962 45.000 5.05 0.00 0.00 4.18
538 539 1.816074 AAAGTTCAAATAGCGCCGGA 58.184 45.000 5.05 0.00 0.00 5.14
539 540 2.095466 TCAAAAGTTCAAATAGCGCCGG 60.095 45.455 2.29 0.00 0.00 6.13
540 541 3.163594 CTCAAAAGTTCAAATAGCGCCG 58.836 45.455 2.29 0.00 0.00 6.46
541 542 3.190535 TCCTCAAAAGTTCAAATAGCGCC 59.809 43.478 2.29 0.00 0.00 6.53
542 543 4.159120 GTCCTCAAAAGTTCAAATAGCGC 58.841 43.478 0.00 0.00 0.00 5.92
543 544 5.356882 TGTCCTCAAAAGTTCAAATAGCG 57.643 39.130 0.00 0.00 0.00 4.26
544 545 6.803807 GTCATGTCCTCAAAAGTTCAAATAGC 59.196 38.462 0.00 0.00 0.00 2.97
545 546 8.019669 CAGTCATGTCCTCAAAAGTTCAAATAG 58.980 37.037 0.00 0.00 0.00 1.73
546 547 7.040478 CCAGTCATGTCCTCAAAAGTTCAAATA 60.040 37.037 0.00 0.00 0.00 1.40
547 548 6.239120 CCAGTCATGTCCTCAAAAGTTCAAAT 60.239 38.462 0.00 0.00 0.00 2.32
548 549 5.067674 CCAGTCATGTCCTCAAAAGTTCAAA 59.932 40.000 0.00 0.00 0.00 2.69
549 550 4.580167 CCAGTCATGTCCTCAAAAGTTCAA 59.420 41.667 0.00 0.00 0.00 2.69
550 551 4.136796 CCAGTCATGTCCTCAAAAGTTCA 58.863 43.478 0.00 0.00 0.00 3.18
551 552 3.503748 CCCAGTCATGTCCTCAAAAGTTC 59.496 47.826 0.00 0.00 0.00 3.01
552 553 3.117512 ACCCAGTCATGTCCTCAAAAGTT 60.118 43.478 0.00 0.00 0.00 2.66
553 554 2.443255 ACCCAGTCATGTCCTCAAAAGT 59.557 45.455 0.00 0.00 0.00 2.66
554 555 2.816087 CACCCAGTCATGTCCTCAAAAG 59.184 50.000 0.00 0.00 0.00 2.27
555 556 2.441375 TCACCCAGTCATGTCCTCAAAA 59.559 45.455 0.00 0.00 0.00 2.44
556 557 2.054021 TCACCCAGTCATGTCCTCAAA 58.946 47.619 0.00 0.00 0.00 2.69
557 558 1.728323 TCACCCAGTCATGTCCTCAA 58.272 50.000 0.00 0.00 0.00 3.02
558 559 1.728323 TTCACCCAGTCATGTCCTCA 58.272 50.000 0.00 0.00 0.00 3.86
559 560 2.859165 TTTCACCCAGTCATGTCCTC 57.141 50.000 0.00 0.00 0.00 3.71
560 561 3.593442 TTTTTCACCCAGTCATGTCCT 57.407 42.857 0.00 0.00 0.00 3.85
585 586 2.576847 CTTTTTCATCGCCGGCGC 60.577 61.111 42.78 9.12 39.59 6.53
586 587 1.226018 GTCTTTTTCATCGCCGGCG 60.226 57.895 42.13 42.13 41.35 6.46
587 588 1.136774 GGTCTTTTTCATCGCCGGC 59.863 57.895 19.07 19.07 0.00 6.13
588 589 0.727398 GAGGTCTTTTTCATCGCCGG 59.273 55.000 0.00 0.00 0.00 6.13
589 590 0.727398 GGAGGTCTTTTTCATCGCCG 59.273 55.000 0.00 0.00 0.00 6.46
590 591 1.740025 CAGGAGGTCTTTTTCATCGCC 59.260 52.381 0.00 0.00 0.00 5.54
591 592 2.699954 TCAGGAGGTCTTTTTCATCGC 58.300 47.619 0.00 0.00 0.00 4.58
592 593 3.686726 CCTTCAGGAGGTCTTTTTCATCG 59.313 47.826 0.00 0.00 40.95 3.84
593 594 4.013050 CCCTTCAGGAGGTCTTTTTCATC 58.987 47.826 0.00 0.00 44.71 2.92
594 595 3.245407 CCCCTTCAGGAGGTCTTTTTCAT 60.245 47.826 0.00 0.00 44.71 2.57
595 596 2.108250 CCCCTTCAGGAGGTCTTTTTCA 59.892 50.000 0.00 0.00 44.71 2.69
596 597 2.375509 TCCCCTTCAGGAGGTCTTTTTC 59.624 50.000 0.00 0.00 44.71 2.29
597 598 2.428901 TCCCCTTCAGGAGGTCTTTTT 58.571 47.619 0.00 0.00 44.71 1.94
598 599 2.108425 GTTCCCCTTCAGGAGGTCTTTT 59.892 50.000 0.00 0.00 44.71 2.27
599 600 1.705745 GTTCCCCTTCAGGAGGTCTTT 59.294 52.381 0.00 0.00 44.71 2.52
600 601 1.132365 AGTTCCCCTTCAGGAGGTCTT 60.132 52.381 0.00 0.00 44.71 3.01
601 602 0.494095 AGTTCCCCTTCAGGAGGTCT 59.506 55.000 0.00 0.00 44.71 3.85
602 603 0.906066 GAGTTCCCCTTCAGGAGGTC 59.094 60.000 0.00 0.00 44.71 3.85
603 604 0.905337 CGAGTTCCCCTTCAGGAGGT 60.905 60.000 0.00 0.00 44.71 3.85
604 605 1.617947 CCGAGTTCCCCTTCAGGAGG 61.618 65.000 0.00 0.00 45.86 4.30
605 606 1.617947 CCCGAGTTCCCCTTCAGGAG 61.618 65.000 0.00 0.00 37.20 3.69
606 607 1.612442 CCCGAGTTCCCCTTCAGGA 60.612 63.158 0.00 0.00 38.24 3.86
607 608 2.670148 CCCCGAGTTCCCCTTCAGG 61.670 68.421 0.00 0.00 0.00 3.86
608 609 2.670148 CCCCCGAGTTCCCCTTCAG 61.670 68.421 0.00 0.00 0.00 3.02
609 610 2.609610 CCCCCGAGTTCCCCTTCA 60.610 66.667 0.00 0.00 0.00 3.02
623 624 2.190578 CATCTTCAGCCGTCCCCC 59.809 66.667 0.00 0.00 0.00 5.40
624 625 2.514824 GCATCTTCAGCCGTCCCC 60.515 66.667 0.00 0.00 0.00 4.81
625 626 1.522580 GAGCATCTTCAGCCGTCCC 60.523 63.158 0.00 0.00 0.00 4.46
626 627 4.116878 GAGCATCTTCAGCCGTCC 57.883 61.111 0.00 0.00 0.00 4.79
637 638 5.146010 AGGCATTAGTAGCTTAGAGCATC 57.854 43.478 0.00 0.00 45.56 3.91
638 639 6.672266 TTAGGCATTAGTAGCTTAGAGCAT 57.328 37.500 0.00 0.00 45.56 3.79
639 640 6.479972 TTTAGGCATTAGTAGCTTAGAGCA 57.520 37.500 0.00 0.00 45.56 4.26
640 641 6.761714 TGTTTTAGGCATTAGTAGCTTAGAGC 59.238 38.462 0.00 0.00 42.84 4.09
641 642 8.718102 TTGTTTTAGGCATTAGTAGCTTAGAG 57.282 34.615 0.00 0.00 0.00 2.43
642 643 9.326413 GATTGTTTTAGGCATTAGTAGCTTAGA 57.674 33.333 0.00 0.00 0.00 2.10
643 644 8.560374 GGATTGTTTTAGGCATTAGTAGCTTAG 58.440 37.037 0.00 0.00 0.00 2.18
644 645 8.050325 TGGATTGTTTTAGGCATTAGTAGCTTA 58.950 33.333 0.00 0.00 0.00 3.09
645 646 6.889722 TGGATTGTTTTAGGCATTAGTAGCTT 59.110 34.615 0.00 0.00 0.00 3.74
646 647 6.318900 GTGGATTGTTTTAGGCATTAGTAGCT 59.681 38.462 0.00 0.00 0.00 3.32
647 648 6.094881 TGTGGATTGTTTTAGGCATTAGTAGC 59.905 38.462 0.00 0.00 0.00 3.58
648 649 7.472543 GTGTGGATTGTTTTAGGCATTAGTAG 58.527 38.462 0.00 0.00 0.00 2.57
649 650 6.092944 CGTGTGGATTGTTTTAGGCATTAGTA 59.907 38.462 0.00 0.00 0.00 1.82
650 651 5.106317 CGTGTGGATTGTTTTAGGCATTAGT 60.106 40.000 0.00 0.00 0.00 2.24
651 652 5.331902 CGTGTGGATTGTTTTAGGCATTAG 58.668 41.667 0.00 0.00 0.00 1.73
652 653 4.380023 GCGTGTGGATTGTTTTAGGCATTA 60.380 41.667 0.00 0.00 0.00 1.90
653 654 3.613910 GCGTGTGGATTGTTTTAGGCATT 60.614 43.478 0.00 0.00 0.00 3.56
654 655 2.094752 GCGTGTGGATTGTTTTAGGCAT 60.095 45.455 0.00 0.00 0.00 4.40
655 656 1.268352 GCGTGTGGATTGTTTTAGGCA 59.732 47.619 0.00 0.00 0.00 4.75
656 657 1.727857 CGCGTGTGGATTGTTTTAGGC 60.728 52.381 0.00 0.00 0.00 3.93
657 658 1.727857 GCGCGTGTGGATTGTTTTAGG 60.728 52.381 8.43 0.00 0.00 2.69
658 659 1.069568 TGCGCGTGTGGATTGTTTTAG 60.070 47.619 8.43 0.00 0.00 1.85
659 660 0.945099 TGCGCGTGTGGATTGTTTTA 59.055 45.000 8.43 0.00 0.00 1.52
660 661 0.317770 CTGCGCGTGTGGATTGTTTT 60.318 50.000 8.43 0.00 0.00 2.43
661 662 1.163420 TCTGCGCGTGTGGATTGTTT 61.163 50.000 8.43 0.00 0.00 2.83
662 663 0.955428 ATCTGCGCGTGTGGATTGTT 60.955 50.000 8.43 0.00 0.00 2.83
663 664 1.361668 GATCTGCGCGTGTGGATTGT 61.362 55.000 8.43 0.00 0.00 2.71
664 665 1.349627 GATCTGCGCGTGTGGATTG 59.650 57.895 8.43 0.00 0.00 2.67
665 666 1.815421 GGATCTGCGCGTGTGGATT 60.815 57.895 8.43 0.00 0.00 3.01
666 667 2.202932 GGATCTGCGCGTGTGGAT 60.203 61.111 8.43 6.47 0.00 3.41
667 668 2.520465 ATTGGATCTGCGCGTGTGGA 62.520 55.000 8.43 1.19 0.00 4.02
668 669 2.108514 ATTGGATCTGCGCGTGTGG 61.109 57.895 8.43 0.00 0.00 4.17
669 670 1.061411 CATTGGATCTGCGCGTGTG 59.939 57.895 8.43 0.00 0.00 3.82
670 671 0.462581 ATCATTGGATCTGCGCGTGT 60.463 50.000 8.43 0.00 0.00 4.49
671 672 0.234106 GATCATTGGATCTGCGCGTG 59.766 55.000 8.43 0.68 45.32 5.34
672 673 2.609825 GATCATTGGATCTGCGCGT 58.390 52.632 8.43 0.00 45.32 6.01
680 681 1.496429 GTGGTGAGGGGATCATTGGAT 59.504 52.381 0.00 0.00 40.92 3.41
681 682 0.918983 GTGGTGAGGGGATCATTGGA 59.081 55.000 0.00 0.00 40.92 3.53
682 683 0.921896 AGTGGTGAGGGGATCATTGG 59.078 55.000 0.00 0.00 40.92 3.16
683 684 2.814805 AAGTGGTGAGGGGATCATTG 57.185 50.000 0.00 0.00 40.92 2.82
684 685 4.047166 TCATAAGTGGTGAGGGGATCATT 58.953 43.478 0.00 0.00 40.92 2.57
685 686 3.392616 GTCATAAGTGGTGAGGGGATCAT 59.607 47.826 0.00 0.00 40.92 2.45
686 687 2.771943 GTCATAAGTGGTGAGGGGATCA 59.228 50.000 0.00 0.00 34.79 2.92
687 688 2.104963 GGTCATAAGTGGTGAGGGGATC 59.895 54.545 0.00 0.00 0.00 3.36
688 689 2.127708 GGTCATAAGTGGTGAGGGGAT 58.872 52.381 0.00 0.00 0.00 3.85
689 690 1.580059 GGTCATAAGTGGTGAGGGGA 58.420 55.000 0.00 0.00 0.00 4.81
690 691 0.178068 CGGTCATAAGTGGTGAGGGG 59.822 60.000 0.00 0.00 0.00 4.79
691 692 0.462047 GCGGTCATAAGTGGTGAGGG 60.462 60.000 0.00 0.00 0.00 4.30
692 693 0.462047 GGCGGTCATAAGTGGTGAGG 60.462 60.000 0.00 0.00 0.00 3.86
693 694 0.806102 CGGCGGTCATAAGTGGTGAG 60.806 60.000 0.00 0.00 0.00 3.51
694 695 1.216977 CGGCGGTCATAAGTGGTGA 59.783 57.895 0.00 0.00 0.00 4.02
695 696 1.813753 CCGGCGGTCATAAGTGGTG 60.814 63.158 19.97 0.00 0.00 4.17
696 697 1.956629 CTCCGGCGGTCATAAGTGGT 61.957 60.000 27.32 0.00 0.00 4.16
697 698 1.227263 CTCCGGCGGTCATAAGTGG 60.227 63.158 27.32 0.00 0.00 4.00
698 699 1.227263 CCTCCGGCGGTCATAAGTG 60.227 63.158 27.32 5.81 0.00 3.16
699 700 1.380785 TCCTCCGGCGGTCATAAGT 60.381 57.895 27.32 0.00 0.00 2.24
700 701 1.364171 CTCCTCCGGCGGTCATAAG 59.636 63.158 27.32 15.30 0.00 1.73
701 702 2.131709 CCTCCTCCGGCGGTCATAA 61.132 63.158 27.32 4.71 0.00 1.90
702 703 2.520982 CCTCCTCCGGCGGTCATA 60.521 66.667 27.32 5.16 0.00 2.15
710 711 2.043450 AGAGAGTGCCTCCTCCGG 60.043 66.667 0.00 0.00 42.97 5.14
711 712 1.379176 TCAGAGAGTGCCTCCTCCG 60.379 63.158 0.00 0.00 42.97 4.63
712 713 1.662438 CGTCAGAGAGTGCCTCCTCC 61.662 65.000 0.00 0.00 42.97 4.30
713 714 1.662438 CCGTCAGAGAGTGCCTCCTC 61.662 65.000 0.00 0.00 42.97 3.71
714 715 1.680651 CCGTCAGAGAGTGCCTCCT 60.681 63.158 0.00 0.00 42.97 3.69
715 716 2.716017 CCCGTCAGAGAGTGCCTCC 61.716 68.421 0.00 0.00 42.97 4.30
716 717 2.716017 CCCCGTCAGAGAGTGCCTC 61.716 68.421 0.00 0.00 42.28 4.70
717 718 2.681778 CCCCGTCAGAGAGTGCCT 60.682 66.667 0.00 0.00 0.00 4.75
718 719 3.775654 CCCCCGTCAGAGAGTGCC 61.776 72.222 0.00 0.00 0.00 5.01
719 720 4.459089 GCCCCCGTCAGAGAGTGC 62.459 72.222 0.00 0.00 0.00 4.40
720 721 4.135153 CGCCCCCGTCAGAGAGTG 62.135 72.222 0.00 0.00 0.00 3.51
731 732 3.315140 GATCTAGCCTCCGCCCCC 61.315 72.222 0.00 0.00 34.57 5.40
732 733 3.686045 CGATCTAGCCTCCGCCCC 61.686 72.222 0.00 0.00 34.57 5.80
733 734 4.365505 GCGATCTAGCCTCCGCCC 62.366 72.222 0.00 0.00 41.59 6.13
735 736 0.530870 AAAAGCGATCTAGCCTCCGC 60.531 55.000 0.00 0.00 47.00 5.54
736 737 1.067821 AGAAAAGCGATCTAGCCTCCG 59.932 52.381 0.00 0.00 38.01 4.63
737 738 2.900716 AGAAAAGCGATCTAGCCTCC 57.099 50.000 0.00 0.00 38.01 4.30
738 739 4.269844 CAGAAAGAAAAGCGATCTAGCCTC 59.730 45.833 0.00 0.00 38.01 4.70
739 740 4.187694 CAGAAAGAAAAGCGATCTAGCCT 58.812 43.478 0.00 0.00 38.01 4.58
740 741 3.242576 GCAGAAAGAAAAGCGATCTAGCC 60.243 47.826 0.00 0.00 38.01 3.93
741 742 3.242576 GGCAGAAAGAAAAGCGATCTAGC 60.243 47.826 0.00 0.00 37.41 3.42
742 743 3.935203 TGGCAGAAAGAAAAGCGATCTAG 59.065 43.478 0.00 0.00 0.00 2.43
743 744 3.937814 TGGCAGAAAGAAAAGCGATCTA 58.062 40.909 0.00 0.00 0.00 1.98
744 745 2.783135 TGGCAGAAAGAAAAGCGATCT 58.217 42.857 0.00 0.00 0.00 2.75
745 746 3.559238 TTGGCAGAAAGAAAAGCGATC 57.441 42.857 0.00 0.00 0.00 3.69
746 747 3.569701 TCTTTGGCAGAAAGAAAAGCGAT 59.430 39.130 7.50 0.00 33.72 4.58
747 748 2.948979 TCTTTGGCAGAAAGAAAAGCGA 59.051 40.909 7.50 0.00 33.72 4.93
748 749 3.354089 TCTTTGGCAGAAAGAAAAGCG 57.646 42.857 7.50 0.00 33.72 4.68
757 758 3.801594 GCAAATCGTTTTCTTTGGCAGAA 59.198 39.130 0.00 0.00 39.99 3.02
758 759 3.068024 AGCAAATCGTTTTCTTTGGCAGA 59.932 39.130 0.00 0.00 33.85 4.26
759 760 3.383761 AGCAAATCGTTTTCTTTGGCAG 58.616 40.909 0.00 0.00 33.85 4.85
760 761 3.380142 GAGCAAATCGTTTTCTTTGGCA 58.620 40.909 0.00 0.00 33.85 4.92
761 762 2.405025 CGAGCAAATCGTTTTCTTTGGC 59.595 45.455 0.00 0.00 46.62 4.52
773 774 1.730446 GCAAGAGCAACCGAGCAAATC 60.730 52.381 0.00 0.00 41.58 2.17
774 775 0.242017 GCAAGAGCAACCGAGCAAAT 59.758 50.000 0.00 0.00 41.58 2.32
775 776 0.819259 AGCAAGAGCAACCGAGCAAA 60.819 50.000 0.00 0.00 45.49 3.68
780 781 0.391661 GATGGAGCAAGAGCAACCGA 60.392 55.000 0.00 0.00 45.49 4.69
784 785 0.107993 CGGAGATGGAGCAAGAGCAA 60.108 55.000 0.00 0.00 45.49 3.91
822 823 1.452651 CTGCGAATGGCCATGGAGT 60.453 57.895 21.63 2.29 42.61 3.85
842 843 4.749310 ACTTGCAGCGAGGAGGCG 62.749 66.667 14.59 0.00 38.18 5.52
843 844 3.123620 CACTTGCAGCGAGGAGGC 61.124 66.667 14.59 0.00 0.00 4.70
844 845 2.031516 CACACTTGCAGCGAGGAGG 61.032 63.158 14.59 5.74 0.00 4.30
845 846 2.031516 CCACACTTGCAGCGAGGAG 61.032 63.158 14.59 8.52 0.00 3.69
851 864 0.660300 GCGTAAACCACACTTGCAGC 60.660 55.000 0.00 0.00 0.00 5.25
852 865 0.944386 AGCGTAAACCACACTTGCAG 59.056 50.000 0.00 0.00 0.00 4.41
858 871 2.215196 TCTGGAAAGCGTAAACCACAC 58.785 47.619 0.00 0.00 0.00 3.82
867 880 2.410730 CGTAAACGAATCTGGAAAGCGT 59.589 45.455 0.00 0.00 43.02 5.07
875 888 3.611113 ACGAATGTCCGTAAACGAATCTG 59.389 43.478 3.65 0.00 41.44 2.90
920 933 4.374702 GTGTTCCAGTGCAGCGCG 62.375 66.667 0.00 0.00 0.00 6.86
1066 1095 2.997897 AGGAGGCGGCTTCGAGTT 60.998 61.111 14.76 0.00 35.61 3.01
1342 1371 1.550524 CAACATCAACGAGGAGGAGGA 59.449 52.381 0.00 0.00 0.00 3.71
1415 1446 3.040147 TGCTAACGGCCTAAGATATGC 57.960 47.619 0.00 0.00 40.92 3.14
1421 1452 0.940126 CAGCATGCTAACGGCCTAAG 59.060 55.000 22.19 0.00 40.92 2.18
1423 1454 0.251916 AACAGCATGCTAACGGCCTA 59.748 50.000 22.19 0.00 42.53 3.93
1427 1458 1.526887 CGGATAACAGCATGCTAACGG 59.473 52.381 22.19 10.78 42.53 4.44
1430 1461 1.593196 GCCGGATAACAGCATGCTAA 58.407 50.000 22.19 9.55 42.53 3.09
1490 1531 7.984422 TTGCTTGATCAGTTGATTCTAAAGA 57.016 32.000 0.00 0.00 34.37 2.52
1731 1815 8.405531 AGGAAATGTACAATCCATTTGAATACG 58.594 33.333 24.88 0.00 41.34 3.06
1899 1983 0.508641 GCATATCAACCGCGTGCTAG 59.491 55.000 4.92 0.00 33.25 3.42
2438 2524 5.581874 TCGCTATTTTTAGGAAAAGGGTACG 59.418 40.000 0.00 0.00 38.09 3.67
3296 3393 4.168283 AGGCTAGAGTCAACTAGGGTATCA 59.832 45.833 0.00 0.00 39.88 2.15
3492 3589 7.553881 TTTCCTGAAAGACAGTAAAGTTGAG 57.446 36.000 0.00 0.00 44.40 3.02
3497 3594 7.095695 TGGTTTTTCCTGAAAGACAGTAAAG 57.904 36.000 13.30 0.00 44.40 1.85
3549 3646 1.422402 TGGCTAAACCGGGTCTTTCTT 59.578 47.619 6.32 0.00 43.94 2.52
3562 3659 8.497910 AGTCCTCAAGATATAATCTGGCTAAA 57.502 34.615 0.00 0.00 40.13 1.85
3636 3734 2.577700 TGCACCTTCGTGTTGGTTATT 58.422 42.857 0.00 0.00 42.39 1.40
3749 3847 4.118410 CTCTCTCGCAGTGCTTATCAAAT 58.882 43.478 14.33 0.00 0.00 2.32
3767 3865 7.148641 TCAGTTTGATTCTACAACTGTCTCTC 58.851 38.462 16.67 0.00 34.24 3.20
3809 3907 1.945387 CCAATCCTGTGTCCAGATCG 58.055 55.000 0.00 0.00 41.50 3.69
3898 5819 4.796290 GCTTCCACTAAAAGGCAAGGAAAC 60.796 45.833 0.00 0.00 35.00 2.78
3899 5820 3.320826 GCTTCCACTAAAAGGCAAGGAAA 59.679 43.478 0.00 0.00 35.00 3.13
3900 5821 2.890945 GCTTCCACTAAAAGGCAAGGAA 59.109 45.455 0.00 0.00 34.30 3.36
3901 5822 2.514803 GCTTCCACTAAAAGGCAAGGA 58.485 47.619 0.00 0.00 0.00 3.36
3902 5823 1.546029 GGCTTCCACTAAAAGGCAAGG 59.454 52.381 4.74 0.00 45.73 3.61
3964 5885 7.144661 TGAACATTGCGACAATTATCAAGTTT 58.855 30.769 11.27 0.00 0.00 2.66
3970 5891 7.697710 TCATTCTTGAACATTGCGACAATTATC 59.302 33.333 2.86 5.38 0.00 1.75
4011 5932 3.617263 AGTCACGAATTAAGATTCACCGC 59.383 43.478 0.00 0.00 41.43 5.68
4083 6004 2.295349 CCAGTTCATCTTTTGCTGTGCT 59.705 45.455 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.