Multiple sequence alignment - TraesCS6D01G241800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G241800 chr6D 100.000 7489 0 0 1 7489 344169226 344176714 0.000000e+00 13830.0
1 TraesCS6D01G241800 chr6B 95.995 3645 91 8 3436 7034 519399683 519403318 0.000000e+00 5871.0
2 TraesCS6D01G241800 chr6B 93.199 2779 114 35 590 3330 519396843 519399584 0.000000e+00 4015.0
3 TraesCS6D01G241800 chr6B 94.260 453 14 8 7042 7489 519403421 519403866 0.000000e+00 682.0
4 TraesCS6D01G241800 chr6B 89.286 168 4 3 440 593 519396517 519396684 1.650000e-46 198.0
5 TraesCS6D01G241800 chr6B 91.579 95 6 2 1360 1454 472612057 472612149 6.100000e-26 130.0
6 TraesCS6D01G241800 chr6B 91.176 68 6 0 371 438 234842440 234842373 8.000000e-15 93.5
7 TraesCS6D01G241800 chr6A 95.560 2320 73 10 3290 5585 484563272 484565585 0.000000e+00 3687.0
8 TraesCS6D01G241800 chr6A 93.430 1857 65 19 1447 3251 484561433 484563284 0.000000e+00 2700.0
9 TraesCS6D01G241800 chr6A 95.147 1154 44 4 5583 6727 484565645 484566795 0.000000e+00 1810.0
10 TraesCS6D01G241800 chr6A 91.577 926 44 16 472 1366 484560514 484561436 0.000000e+00 1247.0
11 TraesCS6D01G241800 chr6A 89.765 469 20 4 7046 7489 484567259 484567724 6.520000e-160 575.0
12 TraesCS6D01G241800 chr6A 91.403 221 10 6 6826 7046 484566964 484567175 2.040000e-75 294.0
13 TraesCS6D01G241800 chr6A 89.899 99 8 2 1351 1449 606033260 606033356 7.890000e-25 126.0
14 TraesCS6D01G241800 chr5B 91.827 1297 88 8 1915 3201 27403960 27405248 0.000000e+00 1792.0
15 TraesCS6D01G241800 chr5B 91.984 1285 87 9 1923 3200 27378176 27379451 0.000000e+00 1788.0
16 TraesCS6D01G241800 chr3B 93.142 627 34 6 2583 3201 608259197 608259822 0.000000e+00 911.0
17 TraesCS6D01G241800 chr3B 91.489 94 8 0 3288 3381 135685090 135684997 6.100000e-26 130.0
18 TraesCS6D01G241800 chr7D 92.663 627 36 7 2583 3201 232339081 232339705 0.000000e+00 894.0
19 TraesCS6D01G241800 chr7D 87.946 224 26 1 214 436 484828716 484828939 5.760000e-66 263.0
20 TraesCS6D01G241800 chr7D 86.592 179 14 9 6536 6710 436459778 436459606 9.920000e-44 189.0
21 TraesCS6D01G241800 chr7D 89.109 101 7 4 3284 3382 52840443 52840541 1.020000e-23 122.0
22 TraesCS6D01G241800 chr7D 88.235 102 10 2 3281 3381 552499656 552499556 3.670000e-23 121.0
23 TraesCS6D01G241800 chrUn 100.000 417 0 0 3469 3885 477117611 477117195 0.000000e+00 771.0
24 TraesCS6D01G241800 chr2D 96.811 439 14 0 1 439 27650434 27650872 0.000000e+00 734.0
25 TraesCS6D01G241800 chr2D 93.333 90 4 1 3288 3377 567635666 567635579 1.700000e-26 132.0
26 TraesCS6D01G241800 chr3D 96.578 263 9 0 177 439 347449656 347449394 3.210000e-118 436.0
27 TraesCS6D01G241800 chr3D 96.875 192 6 0 1 192 347449862 347449671 9.370000e-84 322.0
28 TraesCS6D01G241800 chr3D 89.000 100 9 2 3286 3384 224304755 224304657 1.020000e-23 122.0
29 TraesCS6D01G241800 chr3D 84.722 72 9 2 369 439 19789178 19789248 3.750000e-08 71.3
30 TraesCS6D01G241800 chr1B 90.789 228 20 1 214 440 566766801 566767028 3.400000e-78 303.0
31 TraesCS6D01G241800 chr4A 92.258 155 11 1 6535 6688 490599551 490599705 1.270000e-52 219.0
32 TraesCS6D01G241800 chr4A 89.216 102 10 1 1364 1465 712603262 712603162 7.890000e-25 126.0
33 TraesCS6D01G241800 chr4A 87.324 71 8 1 369 439 737524712 737524643 6.230000e-11 80.5
34 TraesCS6D01G241800 chr4B 91.139 158 10 2 6534 6688 510827814 510827658 2.120000e-50 211.0
35 TraesCS6D01G241800 chr4B 90.909 154 10 2 6537 6687 146469216 146469368 3.540000e-48 204.0
36 TraesCS6D01G241800 chr3A 90.909 154 13 1 6534 6686 603266530 603266377 9.850000e-49 206.0
37 TraesCS6D01G241800 chr7A 89.873 158 12 2 6537 6690 421785006 421785163 4.580000e-47 200.0
38 TraesCS6D01G241800 chr1A 88.485 165 15 3 6537 6697 465505246 465505082 5.930000e-46 196.0
39 TraesCS6D01G241800 chr1A 90.625 96 8 1 1364 1459 533694061 533693967 7.890000e-25 126.0
40 TraesCS6D01G241800 chr1A 89.796 98 8 2 3287 3383 542440310 542440406 2.840000e-24 124.0
41 TraesCS6D01G241800 chr2A 85.926 135 17 2 3250 3383 678161391 678161258 7.830000e-30 143.0
42 TraesCS6D01G241800 chr2B 93.333 90 6 0 3286 3375 508956373 508956284 4.710000e-27 134.0
43 TraesCS6D01G241800 chr2B 93.478 92 3 3 1363 1453 600748985 600749074 4.710000e-27 134.0
44 TraesCS6D01G241800 chr2B 88.235 102 8 4 1364 1463 70878898 70878997 1.320000e-22 119.0
45 TraesCS6D01G241800 chr5A 94.253 87 4 1 1363 1449 443966874 443966789 1.700000e-26 132.0
46 TraesCS6D01G241800 chr4D 90.722 97 7 2 1354 1449 18692607 18692702 2.190000e-25 128.0
47 TraesCS6D01G241800 chr1D 87.619 105 9 4 3287 3388 253197623 253197520 1.320000e-22 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G241800 chr6D 344169226 344176714 7488 False 13830.000000 13830 100.000000 1 7489 1 chr6D.!!$F1 7488
1 TraesCS6D01G241800 chr6B 519396517 519403866 7349 False 2691.500000 5871 93.185000 440 7489 4 chr6B.!!$F2 7049
2 TraesCS6D01G241800 chr6A 484560514 484567724 7210 False 1718.833333 3687 92.813667 472 7489 6 chr6A.!!$F2 7017
3 TraesCS6D01G241800 chr5B 27403960 27405248 1288 False 1792.000000 1792 91.827000 1915 3201 1 chr5B.!!$F2 1286
4 TraesCS6D01G241800 chr5B 27378176 27379451 1275 False 1788.000000 1788 91.984000 1923 3200 1 chr5B.!!$F1 1277
5 TraesCS6D01G241800 chr3B 608259197 608259822 625 False 911.000000 911 93.142000 2583 3201 1 chr3B.!!$F1 618
6 TraesCS6D01G241800 chr7D 232339081 232339705 624 False 894.000000 894 92.663000 2583 3201 1 chr7D.!!$F2 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
130 131 0.039617 TGCTCGCGGAACATTTTTGG 60.040 50.000 6.13 0.00 0.00 3.28 F
322 323 0.105039 GCTCCTCCGGTCCACAATAG 59.895 60.000 0.00 0.00 0.00 1.73 F
408 409 0.108992 GGCTCGTGATAACGTGACCA 60.109 55.000 8.86 0.00 0.00 4.02 F
411 412 0.108992 TCGTGATAACGTGACCAGGC 60.109 55.000 1.71 0.00 0.00 4.85 F
413 414 0.108992 GTGATAACGTGACCAGGCGA 60.109 55.000 0.00 0.00 0.00 5.54 F
895 1102 0.171455 CTTTCTGTCGCTCTACCGCT 59.829 55.000 0.00 0.00 0.00 5.52 F
976 1183 0.315251 GCCAGTGCCAAGGTTTCTTC 59.685 55.000 0.00 0.00 0.00 2.87 F
1119 1328 0.895100 TGATTGTCTGCAAGCCCCAC 60.895 55.000 0.00 0.00 40.02 4.61 F
2840 3093 1.434555 CCGTCGGATAAACAGTTGCA 58.565 50.000 4.91 0.00 0.00 4.08 F
3996 4307 1.068885 GTGAGTGTCAGTGTCTCCGAG 60.069 57.143 9.07 0.00 0.00 4.63 F
5034 5357 0.540365 TTTCAAGGGCAGCTCTTGGG 60.540 55.000 30.90 10.43 41.23 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1599 1808 1.831106 ACACATGATAGCCTGAACGGA 59.169 47.619 0.0 0.0 33.16 4.69 R
1746 1980 2.038952 AGAAATCTGTAGCACTGCACCA 59.961 45.455 3.3 0.0 0.00 4.17 R
1973 2221 2.872858 AGTCGAAAGCAACTTCTTGACC 59.127 45.455 0.0 0.0 0.00 4.02 R
2008 2256 4.845796 TCATTGCTGAGGTGGGATGATATA 59.154 41.667 0.0 0.0 0.00 0.86 R
2450 2700 4.463050 TTGGGGAAGAAAACCACATACT 57.537 40.909 0.0 0.0 40.70 2.12 R
2891 3144 3.882888 TGGGTGAACTTTCTTGTGTCATC 59.117 43.478 0.0 0.0 0.00 2.92 R
3095 3361 1.202348 GGCCAGAATTGTAACACTGCC 59.798 52.381 0.0 0.0 0.00 4.85 R
3268 3538 7.233757 GGAGTACATCCTCTGTATGGAATTACT 59.766 40.741 0.0 0.0 45.64 2.24 R
4917 5240 0.734889 ACAACTGACAACTGCTGCAC 59.265 50.000 0.0 0.0 0.00 4.57 R
5220 5543 0.889186 AACCCTGTGCCGTTGTCATC 60.889 55.000 0.0 0.0 0.00 2.92 R
7127 7693 1.377725 CAGCACCAACAGGGCTAGG 60.378 63.158 0.0 0.0 42.05 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.897744 TTAGTTGATAGTGATTTTGCAAAAGAG 57.102 29.630 27.08 0.00 0.00 2.85
28 29 8.169977 AGTTGATAGTGATTTTGCAAAAGAGA 57.830 30.769 27.08 12.39 0.00 3.10
29 30 8.632679 AGTTGATAGTGATTTTGCAAAAGAGAA 58.367 29.630 27.08 13.31 0.00 2.87
30 31 9.415544 GTTGATAGTGATTTTGCAAAAGAGAAT 57.584 29.630 27.08 16.81 0.00 2.40
72 73 9.813080 TTTTTGGATTTTGTCGTAAACTTTTTG 57.187 25.926 0.00 0.00 0.00 2.44
73 74 8.535690 TTTGGATTTTGTCGTAAACTTTTTGT 57.464 26.923 0.00 0.00 0.00 2.83
74 75 8.535690 TTGGATTTTGTCGTAAACTTTTTGTT 57.464 26.923 0.00 0.00 41.29 2.83
76 77 8.989980 TGGATTTTGTCGTAAACTTTTTGTTTT 58.010 25.926 0.00 0.00 45.69 2.43
77 78 9.814507 GGATTTTGTCGTAAACTTTTTGTTTTT 57.185 25.926 0.00 0.00 45.69 1.94
82 83 9.857957 TTGTCGTAAACTTTTTGTTTTTATCCT 57.142 25.926 0.00 0.00 45.69 3.24
83 84 9.291664 TGTCGTAAACTTTTTGTTTTTATCCTG 57.708 29.630 0.00 0.00 45.69 3.86
84 85 8.748582 GTCGTAAACTTTTTGTTTTTATCCTGG 58.251 33.333 0.00 0.00 45.69 4.45
85 86 8.684520 TCGTAAACTTTTTGTTTTTATCCTGGA 58.315 29.630 0.00 0.00 45.69 3.86
86 87 9.471084 CGTAAACTTTTTGTTTTTATCCTGGAT 57.529 29.630 14.66 14.66 45.69 3.41
88 89 8.675705 AAACTTTTTGTTTTTATCCTGGATGG 57.324 30.769 19.42 0.00 45.69 3.51
89 90 7.373617 ACTTTTTGTTTTTATCCTGGATGGT 57.626 32.000 19.42 0.00 37.07 3.55
90 91 8.485578 ACTTTTTGTTTTTATCCTGGATGGTA 57.514 30.769 19.42 1.88 37.07 3.25
91 92 8.585018 ACTTTTTGTTTTTATCCTGGATGGTAG 58.415 33.333 19.42 4.80 37.07 3.18
92 93 8.485578 TTTTTGTTTTTATCCTGGATGGTAGT 57.514 30.769 19.42 0.00 37.07 2.73
93 94 9.589461 TTTTTGTTTTTATCCTGGATGGTAGTA 57.411 29.630 19.42 0.00 37.07 1.82
94 95 8.801882 TTTGTTTTTATCCTGGATGGTAGTAG 57.198 34.615 19.42 0.00 37.07 2.57
95 96 6.354130 TGTTTTTATCCTGGATGGTAGTAGC 58.646 40.000 19.42 3.07 37.07 3.58
96 97 6.157994 TGTTTTTATCCTGGATGGTAGTAGCT 59.842 38.462 19.42 0.00 37.07 3.32
97 98 6.420913 TTTTATCCTGGATGGTAGTAGCTC 57.579 41.667 19.42 0.00 37.07 4.09
98 99 3.619900 ATCCTGGATGGTAGTAGCTCA 57.380 47.619 8.75 0.00 37.07 4.26
99 100 3.619900 TCCTGGATGGTAGTAGCTCAT 57.380 47.619 0.00 0.00 37.07 2.90
100 101 3.928754 TCCTGGATGGTAGTAGCTCATT 58.071 45.455 0.00 0.00 37.07 2.57
101 102 3.643320 TCCTGGATGGTAGTAGCTCATTG 59.357 47.826 0.00 0.00 37.07 2.82
102 103 3.643320 CCTGGATGGTAGTAGCTCATTGA 59.357 47.826 0.00 0.00 0.00 2.57
103 104 4.262377 CCTGGATGGTAGTAGCTCATTGAG 60.262 50.000 9.40 9.40 0.00 3.02
104 105 4.546674 TGGATGGTAGTAGCTCATTGAGA 58.453 43.478 17.87 0.00 0.00 3.27
105 106 4.342378 TGGATGGTAGTAGCTCATTGAGAC 59.658 45.833 17.87 7.56 0.00 3.36
106 107 4.586841 GGATGGTAGTAGCTCATTGAGACT 59.413 45.833 17.87 14.18 0.00 3.24
107 108 5.770663 GGATGGTAGTAGCTCATTGAGACTA 59.229 44.000 17.87 13.24 0.00 2.59
108 109 6.265649 GGATGGTAGTAGCTCATTGAGACTAA 59.734 42.308 17.87 4.13 0.00 2.24
109 110 7.039363 GGATGGTAGTAGCTCATTGAGACTAAT 60.039 40.741 17.87 16.99 0.00 1.73
110 111 8.941995 ATGGTAGTAGCTCATTGAGACTAATA 57.058 34.615 17.87 16.15 0.00 0.98
111 112 8.941995 TGGTAGTAGCTCATTGAGACTAATAT 57.058 34.615 17.87 9.63 29.61 1.28
112 113 8.797438 TGGTAGTAGCTCATTGAGACTAATATG 58.203 37.037 17.87 0.00 29.61 1.78
113 114 7.757624 GGTAGTAGCTCATTGAGACTAATATGC 59.242 40.741 17.87 9.83 29.61 3.14
114 115 7.537596 AGTAGCTCATTGAGACTAATATGCT 57.462 36.000 17.87 7.12 34.49 3.79
115 116 7.601856 AGTAGCTCATTGAGACTAATATGCTC 58.398 38.462 17.87 5.18 33.23 4.26
116 117 5.468592 AGCTCATTGAGACTAATATGCTCG 58.531 41.667 17.87 0.00 0.00 5.03
117 118 4.091220 GCTCATTGAGACTAATATGCTCGC 59.909 45.833 17.87 0.00 0.00 5.03
118 119 4.229876 TCATTGAGACTAATATGCTCGCG 58.770 43.478 0.00 0.00 0.00 5.87
119 120 2.706555 TGAGACTAATATGCTCGCGG 57.293 50.000 6.13 0.00 0.00 6.46
120 121 2.227194 TGAGACTAATATGCTCGCGGA 58.773 47.619 6.13 0.00 0.00 5.54
121 122 2.621526 TGAGACTAATATGCTCGCGGAA 59.378 45.455 6.13 0.00 0.00 4.30
122 123 2.981140 GAGACTAATATGCTCGCGGAAC 59.019 50.000 6.13 0.00 0.00 3.62
123 124 2.361119 AGACTAATATGCTCGCGGAACA 59.639 45.455 6.13 2.11 0.00 3.18
124 125 3.005897 AGACTAATATGCTCGCGGAACAT 59.994 43.478 6.13 10.40 0.00 2.71
125 126 3.728845 ACTAATATGCTCGCGGAACATT 58.271 40.909 6.13 2.77 0.00 2.71
126 127 4.127171 ACTAATATGCTCGCGGAACATTT 58.873 39.130 6.13 7.65 0.00 2.32
127 128 4.574828 ACTAATATGCTCGCGGAACATTTT 59.425 37.500 6.13 11.27 0.00 1.82
128 129 4.370364 AATATGCTCGCGGAACATTTTT 57.630 36.364 6.13 3.12 0.00 1.94
129 130 1.981254 ATGCTCGCGGAACATTTTTG 58.019 45.000 6.13 0.00 0.00 2.44
130 131 0.039617 TGCTCGCGGAACATTTTTGG 60.040 50.000 6.13 0.00 0.00 3.28
131 132 0.732538 GCTCGCGGAACATTTTTGGG 60.733 55.000 6.13 0.00 0.00 4.12
132 133 0.109319 CTCGCGGAACATTTTTGGGG 60.109 55.000 6.13 0.00 0.00 4.96
133 134 1.080161 CGCGGAACATTTTTGGGGG 60.080 57.895 0.00 0.00 0.00 5.40
134 135 1.528292 CGCGGAACATTTTTGGGGGA 61.528 55.000 0.00 0.00 0.00 4.81
135 136 0.901827 GCGGAACATTTTTGGGGGAT 59.098 50.000 0.00 0.00 0.00 3.85
136 137 1.134818 GCGGAACATTTTTGGGGGATC 60.135 52.381 0.00 0.00 0.00 3.36
137 138 1.134175 CGGAACATTTTTGGGGGATCG 59.866 52.381 0.00 0.00 0.00 3.69
138 139 2.176045 GGAACATTTTTGGGGGATCGT 58.824 47.619 0.00 0.00 0.00 3.73
139 140 2.565391 GGAACATTTTTGGGGGATCGTT 59.435 45.455 0.00 0.00 0.00 3.85
140 141 3.007506 GGAACATTTTTGGGGGATCGTTT 59.992 43.478 0.00 0.00 0.00 3.60
141 142 3.676291 ACATTTTTGGGGGATCGTTTG 57.324 42.857 0.00 0.00 0.00 2.93
142 143 2.301583 ACATTTTTGGGGGATCGTTTGG 59.698 45.455 0.00 0.00 0.00 3.28
143 144 0.682292 TTTTTGGGGGATCGTTTGGC 59.318 50.000 0.00 0.00 0.00 4.52
144 145 0.470080 TTTTGGGGGATCGTTTGGCA 60.470 50.000 0.00 0.00 0.00 4.92
145 146 0.897863 TTTGGGGGATCGTTTGGCAG 60.898 55.000 0.00 0.00 0.00 4.85
146 147 1.784301 TTGGGGGATCGTTTGGCAGA 61.784 55.000 0.00 0.00 0.00 4.26
147 148 1.452108 GGGGGATCGTTTGGCAGAG 60.452 63.158 0.00 0.00 0.00 3.35
148 149 1.602237 GGGGATCGTTTGGCAGAGA 59.398 57.895 0.00 0.00 0.00 3.10
149 150 0.744771 GGGGATCGTTTGGCAGAGAC 60.745 60.000 0.00 0.00 0.00 3.36
150 151 0.250513 GGGATCGTTTGGCAGAGACT 59.749 55.000 0.00 0.00 0.00 3.24
151 152 1.363744 GGATCGTTTGGCAGAGACTG 58.636 55.000 0.00 0.00 34.12 3.51
152 153 1.066858 GGATCGTTTGGCAGAGACTGA 60.067 52.381 2.81 0.00 32.44 3.41
153 154 2.266554 GATCGTTTGGCAGAGACTGAG 58.733 52.381 2.81 0.00 32.44 3.35
154 155 0.319900 TCGTTTGGCAGAGACTGAGC 60.320 55.000 2.81 0.00 32.44 4.26
155 156 1.621301 CGTTTGGCAGAGACTGAGCG 61.621 60.000 2.81 0.00 32.44 5.03
156 157 1.004560 TTTGGCAGAGACTGAGCGG 60.005 57.895 2.81 0.00 32.44 5.52
157 158 3.596066 TTGGCAGAGACTGAGCGGC 62.596 63.158 2.81 0.00 32.44 6.53
158 159 4.828925 GGCAGAGACTGAGCGGCC 62.829 72.222 0.00 0.00 32.44 6.13
160 161 3.753434 CAGAGACTGAGCGGCCGT 61.753 66.667 28.70 13.92 32.44 5.68
161 162 3.753434 AGAGACTGAGCGGCCGTG 61.753 66.667 28.70 16.62 0.00 4.94
162 163 3.749064 GAGACTGAGCGGCCGTGA 61.749 66.667 28.70 9.94 0.00 4.35
163 164 3.691744 GAGACTGAGCGGCCGTGAG 62.692 68.421 28.70 21.17 0.00 3.51
164 165 3.749064 GACTGAGCGGCCGTGAGA 61.749 66.667 28.70 7.58 0.00 3.27
165 166 3.691744 GACTGAGCGGCCGTGAGAG 62.692 68.421 28.70 19.01 0.00 3.20
166 167 3.443925 CTGAGCGGCCGTGAGAGA 61.444 66.667 28.70 4.12 0.00 3.10
167 168 3.408501 CTGAGCGGCCGTGAGAGAG 62.409 68.421 28.70 10.44 0.00 3.20
168 169 4.863925 GAGCGGCCGTGAGAGAGC 62.864 72.222 28.70 6.99 0.00 4.09
171 172 4.838486 CGGCCGTGAGAGAGCGAC 62.838 72.222 19.50 0.00 0.00 5.19
172 173 3.749064 GGCCGTGAGAGAGCGACA 61.749 66.667 0.00 0.00 0.00 4.35
173 174 2.258591 GCCGTGAGAGAGCGACAA 59.741 61.111 0.00 0.00 0.00 3.18
174 175 1.803519 GCCGTGAGAGAGCGACAAG 60.804 63.158 0.00 0.00 0.00 3.16
175 176 1.581954 CCGTGAGAGAGCGACAAGT 59.418 57.895 0.00 0.00 0.00 3.16
176 177 0.730834 CCGTGAGAGAGCGACAAGTG 60.731 60.000 0.00 0.00 0.00 3.16
177 178 0.730834 CGTGAGAGAGCGACAAGTGG 60.731 60.000 0.00 0.00 0.00 4.00
178 179 0.598562 GTGAGAGAGCGACAAGTGGA 59.401 55.000 0.00 0.00 0.00 4.02
179 180 0.884514 TGAGAGAGCGACAAGTGGAG 59.115 55.000 0.00 0.00 0.00 3.86
180 181 0.885196 GAGAGAGCGACAAGTGGAGT 59.115 55.000 0.00 0.00 0.00 3.85
181 182 2.085320 GAGAGAGCGACAAGTGGAGTA 58.915 52.381 0.00 0.00 0.00 2.59
182 183 2.488545 GAGAGAGCGACAAGTGGAGTAA 59.511 50.000 0.00 0.00 0.00 2.24
183 184 2.891580 AGAGAGCGACAAGTGGAGTAAA 59.108 45.455 0.00 0.00 0.00 2.01
184 185 3.321111 AGAGAGCGACAAGTGGAGTAAAA 59.679 43.478 0.00 0.00 0.00 1.52
185 186 4.021016 AGAGAGCGACAAGTGGAGTAAAAT 60.021 41.667 0.00 0.00 0.00 1.82
186 187 3.997021 AGAGCGACAAGTGGAGTAAAATG 59.003 43.478 0.00 0.00 0.00 2.32
187 188 3.074412 AGCGACAAGTGGAGTAAAATGG 58.926 45.455 0.00 0.00 0.00 3.16
188 189 3.071479 GCGACAAGTGGAGTAAAATGGA 58.929 45.455 0.00 0.00 0.00 3.41
189 190 3.125316 GCGACAAGTGGAGTAAAATGGAG 59.875 47.826 0.00 0.00 0.00 3.86
190 191 4.315803 CGACAAGTGGAGTAAAATGGAGT 58.684 43.478 0.00 0.00 0.00 3.85
191 192 4.755123 CGACAAGTGGAGTAAAATGGAGTT 59.245 41.667 0.00 0.00 0.00 3.01
192 193 5.334105 CGACAAGTGGAGTAAAATGGAGTTG 60.334 44.000 0.00 0.00 0.00 3.16
193 194 4.827284 ACAAGTGGAGTAAAATGGAGTTGG 59.173 41.667 0.00 0.00 0.00 3.77
194 195 4.724279 AGTGGAGTAAAATGGAGTTGGT 57.276 40.909 0.00 0.00 0.00 3.67
195 196 4.398319 AGTGGAGTAAAATGGAGTTGGTG 58.602 43.478 0.00 0.00 0.00 4.17
196 197 3.506067 GTGGAGTAAAATGGAGTTGGTGG 59.494 47.826 0.00 0.00 0.00 4.61
197 198 2.492088 GGAGTAAAATGGAGTTGGTGGC 59.508 50.000 0.00 0.00 0.00 5.01
198 199 3.153919 GAGTAAAATGGAGTTGGTGGCA 58.846 45.455 0.00 0.00 0.00 4.92
199 200 3.157087 AGTAAAATGGAGTTGGTGGCAG 58.843 45.455 0.00 0.00 0.00 4.85
200 201 2.380064 AAAATGGAGTTGGTGGCAGA 57.620 45.000 0.00 0.00 0.00 4.26
201 202 2.610438 AAATGGAGTTGGTGGCAGAT 57.390 45.000 0.00 0.00 0.00 2.90
202 203 2.134789 AATGGAGTTGGTGGCAGATC 57.865 50.000 0.00 0.00 0.00 2.75
203 204 0.257039 ATGGAGTTGGTGGCAGATCC 59.743 55.000 0.00 0.00 0.00 3.36
204 205 1.077429 GGAGTTGGTGGCAGATCCC 60.077 63.158 0.00 0.00 0.00 3.85
205 206 1.685224 GAGTTGGTGGCAGATCCCA 59.315 57.895 0.00 0.00 0.00 4.37
206 207 0.393537 GAGTTGGTGGCAGATCCCAG 60.394 60.000 0.00 0.00 35.05 4.45
212 213 3.797353 GGCAGATCCCAGCCCGAA 61.797 66.667 9.65 0.00 45.18 4.30
213 214 2.203126 GCAGATCCCAGCCCGAAG 60.203 66.667 0.00 0.00 0.00 3.79
214 215 3.036429 GCAGATCCCAGCCCGAAGT 62.036 63.158 0.00 0.00 0.00 3.01
215 216 1.153289 CAGATCCCAGCCCGAAGTG 60.153 63.158 0.00 0.00 0.00 3.16
216 217 2.190578 GATCCCAGCCCGAAGTGG 59.809 66.667 0.00 0.00 37.55 4.00
217 218 2.285368 ATCCCAGCCCGAAGTGGA 60.285 61.111 0.00 0.00 42.00 4.02
218 219 2.317149 GATCCCAGCCCGAAGTGGAG 62.317 65.000 0.00 0.00 42.00 3.86
219 220 3.322466 CCCAGCCCGAAGTGGAGT 61.322 66.667 0.00 0.00 42.00 3.85
220 221 1.987855 CCCAGCCCGAAGTGGAGTA 60.988 63.158 0.00 0.00 42.00 2.59
221 222 1.550130 CCCAGCCCGAAGTGGAGTAA 61.550 60.000 0.00 0.00 42.00 2.24
222 223 0.323629 CCAGCCCGAAGTGGAGTAAA 59.676 55.000 0.00 0.00 42.00 2.01
223 224 1.271163 CCAGCCCGAAGTGGAGTAAAA 60.271 52.381 0.00 0.00 42.00 1.52
224 225 2.618045 CCAGCCCGAAGTGGAGTAAAAT 60.618 50.000 0.00 0.00 42.00 1.82
225 226 2.420022 CAGCCCGAAGTGGAGTAAAATG 59.580 50.000 0.00 0.00 42.00 2.32
226 227 1.743394 GCCCGAAGTGGAGTAAAATGG 59.257 52.381 0.00 0.00 42.00 3.16
227 228 2.617021 GCCCGAAGTGGAGTAAAATGGA 60.617 50.000 0.00 0.00 42.00 3.41
228 229 3.270877 CCCGAAGTGGAGTAAAATGGAG 58.729 50.000 0.00 0.00 42.00 3.86
229 230 3.307480 CCCGAAGTGGAGTAAAATGGAGT 60.307 47.826 0.00 0.00 42.00 3.85
230 231 3.933332 CCGAAGTGGAGTAAAATGGAGTC 59.067 47.826 0.00 0.00 42.00 3.36
231 232 3.612860 CGAAGTGGAGTAAAATGGAGTCG 59.387 47.826 0.00 0.00 0.00 4.18
232 233 3.611766 AGTGGAGTAAAATGGAGTCGG 57.388 47.619 0.00 0.00 0.00 4.79
233 234 2.904434 AGTGGAGTAAAATGGAGTCGGT 59.096 45.455 0.00 0.00 0.00 4.69
234 235 3.000727 GTGGAGTAAAATGGAGTCGGTG 58.999 50.000 0.00 0.00 0.00 4.94
235 236 2.027561 TGGAGTAAAATGGAGTCGGTGG 60.028 50.000 0.00 0.00 0.00 4.61
236 237 2.007608 GAGTAAAATGGAGTCGGTGGC 58.992 52.381 0.00 0.00 0.00 5.01
237 238 1.092348 GTAAAATGGAGTCGGTGGCC 58.908 55.000 0.00 0.00 0.00 5.36
253 254 2.520982 CCGATCCCAGCCCGTCTA 60.521 66.667 0.00 0.00 0.00 2.59
254 255 2.728817 CGATCCCAGCCCGTCTAC 59.271 66.667 0.00 0.00 0.00 2.59
255 256 2.125326 CGATCCCAGCCCGTCTACA 61.125 63.158 0.00 0.00 0.00 2.74
256 257 1.672854 CGATCCCAGCCCGTCTACAA 61.673 60.000 0.00 0.00 0.00 2.41
257 258 0.179081 GATCCCAGCCCGTCTACAAC 60.179 60.000 0.00 0.00 0.00 3.32
258 259 1.623542 ATCCCAGCCCGTCTACAACC 61.624 60.000 0.00 0.00 0.00 3.77
259 260 2.267961 CCAGCCCGTCTACAACCC 59.732 66.667 0.00 0.00 0.00 4.11
260 261 2.589157 CCAGCCCGTCTACAACCCA 61.589 63.158 0.00 0.00 0.00 4.51
261 262 1.602237 CAGCCCGTCTACAACCCAT 59.398 57.895 0.00 0.00 0.00 4.00
262 263 0.828022 CAGCCCGTCTACAACCCATA 59.172 55.000 0.00 0.00 0.00 2.74
263 264 1.208535 CAGCCCGTCTACAACCCATAA 59.791 52.381 0.00 0.00 0.00 1.90
264 265 1.208776 AGCCCGTCTACAACCCATAAC 59.791 52.381 0.00 0.00 0.00 1.89
265 266 1.744798 GCCCGTCTACAACCCATAACC 60.745 57.143 0.00 0.00 0.00 2.85
266 267 1.472026 CCCGTCTACAACCCATAACCG 60.472 57.143 0.00 0.00 0.00 4.44
267 268 1.472026 CCGTCTACAACCCATAACCGG 60.472 57.143 0.00 0.00 0.00 5.28
268 269 1.660167 GTCTACAACCCATAACCGGC 58.340 55.000 0.00 0.00 0.00 6.13
269 270 0.176219 TCTACAACCCATAACCGGCG 59.824 55.000 0.00 0.00 0.00 6.46
270 271 0.108041 CTACAACCCATAACCGGCGT 60.108 55.000 6.01 0.00 0.00 5.68
271 272 0.324285 TACAACCCATAACCGGCGTT 59.676 50.000 6.01 2.92 35.90 4.84
272 273 0.324285 ACAACCCATAACCGGCGTTA 59.676 50.000 6.01 5.28 38.79 3.18
273 274 0.728542 CAACCCATAACCGGCGTTAC 59.271 55.000 6.01 0.00 37.28 2.50
274 275 0.614812 AACCCATAACCGGCGTTACT 59.385 50.000 6.01 0.00 37.28 2.24
275 276 0.614812 ACCCATAACCGGCGTTACTT 59.385 50.000 6.01 0.00 37.28 2.24
276 277 1.011333 CCCATAACCGGCGTTACTTG 58.989 55.000 6.01 1.68 37.28 3.16
277 278 0.375803 CCATAACCGGCGTTACTTGC 59.624 55.000 6.01 0.00 37.28 4.01
283 284 4.526152 GGCGTTACTTGCCGTTTG 57.474 55.556 0.00 0.00 43.70 2.93
284 285 1.728074 GGCGTTACTTGCCGTTTGC 60.728 57.895 0.00 0.00 43.70 3.68
294 295 2.642129 CCGTTTGCACAATCGGCA 59.358 55.556 17.19 0.00 43.77 5.69
295 296 1.729131 CCGTTTGCACAATCGGCAC 60.729 57.895 17.19 0.00 43.77 5.01
296 297 1.009108 CGTTTGCACAATCGGCACA 60.009 52.632 6.05 0.00 41.75 4.57
297 298 0.593518 CGTTTGCACAATCGGCACAA 60.594 50.000 6.05 0.00 41.75 3.33
298 299 0.852136 GTTTGCACAATCGGCACAAC 59.148 50.000 0.00 0.00 41.75 3.32
299 300 0.593518 TTTGCACAATCGGCACAACG 60.594 50.000 0.00 0.00 41.75 4.10
300 301 1.719725 TTGCACAATCGGCACAACGT 61.720 50.000 0.00 0.00 41.75 3.99
301 302 1.440353 GCACAATCGGCACAACGTC 60.440 57.895 0.00 0.00 34.94 4.34
302 303 1.938125 CACAATCGGCACAACGTCA 59.062 52.632 0.00 0.00 34.94 4.35
303 304 0.110688 CACAATCGGCACAACGTCAG 60.111 55.000 0.00 0.00 34.94 3.51
304 305 1.154413 CAATCGGCACAACGTCAGC 60.154 57.895 0.00 0.00 34.94 4.26
305 306 1.301716 AATCGGCACAACGTCAGCT 60.302 52.632 6.76 0.00 34.94 4.24
306 307 1.291877 AATCGGCACAACGTCAGCTC 61.292 55.000 6.76 0.00 34.94 4.09
307 308 3.414700 CGGCACAACGTCAGCTCC 61.415 66.667 6.76 0.00 0.00 4.70
308 309 2.031163 GGCACAACGTCAGCTCCT 59.969 61.111 6.76 0.00 0.00 3.69
309 310 2.029844 GGCACAACGTCAGCTCCTC 61.030 63.158 6.76 0.00 0.00 3.71
310 311 2.029844 GCACAACGTCAGCTCCTCC 61.030 63.158 0.00 0.00 0.00 4.30
311 312 1.734477 CACAACGTCAGCTCCTCCG 60.734 63.158 0.00 0.00 0.00 4.63
312 313 2.125912 CAACGTCAGCTCCTCCGG 60.126 66.667 0.00 0.00 0.00 5.14
313 314 2.600769 AACGTCAGCTCCTCCGGT 60.601 61.111 0.00 0.00 0.00 5.28
314 315 2.637383 AACGTCAGCTCCTCCGGTC 61.637 63.158 0.00 0.00 0.00 4.79
315 316 3.827898 CGTCAGCTCCTCCGGTCC 61.828 72.222 0.00 0.00 0.00 4.46
316 317 2.680352 GTCAGCTCCTCCGGTCCA 60.680 66.667 0.00 0.00 0.00 4.02
317 318 2.680352 TCAGCTCCTCCGGTCCAC 60.680 66.667 0.00 0.00 0.00 4.02
318 319 2.997315 CAGCTCCTCCGGTCCACA 60.997 66.667 0.00 0.00 0.00 4.17
319 320 2.203788 AGCTCCTCCGGTCCACAA 60.204 61.111 0.00 0.00 0.00 3.33
320 321 1.613630 AGCTCCTCCGGTCCACAAT 60.614 57.895 0.00 0.00 0.00 2.71
321 322 0.325296 AGCTCCTCCGGTCCACAATA 60.325 55.000 0.00 0.00 0.00 1.90
322 323 0.105039 GCTCCTCCGGTCCACAATAG 59.895 60.000 0.00 0.00 0.00 1.73
323 324 0.753262 CTCCTCCGGTCCACAATAGG 59.247 60.000 0.00 0.00 0.00 2.57
324 325 1.146263 CCTCCGGTCCACAATAGGC 59.854 63.158 0.00 0.00 0.00 3.93
325 326 1.622607 CCTCCGGTCCACAATAGGCA 61.623 60.000 0.00 0.00 0.00 4.75
326 327 0.469917 CTCCGGTCCACAATAGGCAT 59.530 55.000 0.00 0.00 0.00 4.40
327 328 0.916086 TCCGGTCCACAATAGGCATT 59.084 50.000 0.00 0.00 0.00 3.56
328 329 2.104111 CTCCGGTCCACAATAGGCATTA 59.896 50.000 0.00 0.00 0.00 1.90
329 330 2.506231 TCCGGTCCACAATAGGCATTAA 59.494 45.455 0.00 0.00 0.00 1.40
330 331 3.054287 TCCGGTCCACAATAGGCATTAAA 60.054 43.478 0.00 0.00 0.00 1.52
331 332 3.888930 CCGGTCCACAATAGGCATTAAAT 59.111 43.478 0.00 0.00 0.00 1.40
332 333 4.261572 CCGGTCCACAATAGGCATTAAATG 60.262 45.833 0.00 0.00 0.00 2.32
333 334 4.578516 CGGTCCACAATAGGCATTAAATGA 59.421 41.667 0.00 0.00 0.00 2.57
334 335 5.277974 CGGTCCACAATAGGCATTAAATGAG 60.278 44.000 0.00 0.00 0.00 2.90
335 336 5.010012 GGTCCACAATAGGCATTAAATGAGG 59.990 44.000 0.00 0.00 0.00 3.86
336 337 4.584325 TCCACAATAGGCATTAAATGAGGC 59.416 41.667 0.00 0.00 0.00 4.70
337 338 4.539870 CACAATAGGCATTAAATGAGGCG 58.460 43.478 0.00 0.00 0.00 5.52
338 339 3.004734 ACAATAGGCATTAAATGAGGCGC 59.995 43.478 0.00 0.00 0.00 6.53
339 340 1.225855 TAGGCATTAAATGAGGCGCG 58.774 50.000 0.00 0.00 0.00 6.86
340 341 0.748005 AGGCATTAAATGAGGCGCGT 60.748 50.000 8.43 0.27 0.00 6.01
341 342 0.941542 GGCATTAAATGAGGCGCGTA 59.058 50.000 8.43 0.00 0.00 4.42
342 343 1.333791 GGCATTAAATGAGGCGCGTAC 60.334 52.381 8.43 0.44 0.00 3.67
343 344 1.329292 GCATTAAATGAGGCGCGTACA 59.671 47.619 8.43 6.21 0.00 2.90
344 345 2.032030 GCATTAAATGAGGCGCGTACAT 60.032 45.455 8.43 8.45 0.00 2.29
345 346 3.544651 CATTAAATGAGGCGCGTACATG 58.455 45.455 8.43 0.00 0.00 3.21
346 347 0.934496 TAAATGAGGCGCGTACATGC 59.066 50.000 8.43 0.00 0.00 4.06
352 353 3.788817 GCGCGTACATGCCAAGTA 58.211 55.556 8.43 0.00 0.00 2.24
353 354 2.083183 GCGCGTACATGCCAAGTAA 58.917 52.632 8.43 0.00 0.00 2.24
354 355 0.655733 GCGCGTACATGCCAAGTAAT 59.344 50.000 8.43 0.00 0.00 1.89
355 356 1.862201 GCGCGTACATGCCAAGTAATA 59.138 47.619 8.43 0.00 0.00 0.98
356 357 2.348218 GCGCGTACATGCCAAGTAATAC 60.348 50.000 8.43 0.00 0.00 1.89
357 358 2.861335 CGCGTACATGCCAAGTAATACA 59.139 45.455 0.00 0.00 0.00 2.29
358 359 3.307512 CGCGTACATGCCAAGTAATACAA 59.692 43.478 0.00 0.00 0.00 2.41
359 360 4.584394 GCGTACATGCCAAGTAATACAAC 58.416 43.478 0.00 0.00 0.00 3.32
360 361 4.780946 GCGTACATGCCAAGTAATACAACG 60.781 45.833 0.00 0.00 0.00 4.10
361 362 4.327898 CGTACATGCCAAGTAATACAACGT 59.672 41.667 0.00 0.00 0.00 3.99
362 363 5.515982 CGTACATGCCAAGTAATACAACGTA 59.484 40.000 0.00 0.00 0.00 3.57
363 364 6.199531 CGTACATGCCAAGTAATACAACGTAT 59.800 38.462 0.00 0.00 0.00 3.06
364 365 6.358118 ACATGCCAAGTAATACAACGTATG 57.642 37.500 0.00 0.00 0.00 2.39
365 366 6.110033 ACATGCCAAGTAATACAACGTATGA 58.890 36.000 0.00 0.00 0.00 2.15
366 367 6.765989 ACATGCCAAGTAATACAACGTATGAT 59.234 34.615 0.00 0.00 0.00 2.45
367 368 6.597262 TGCCAAGTAATACAACGTATGATG 57.403 37.500 0.00 0.00 0.00 3.07
368 369 5.007234 TGCCAAGTAATACAACGTATGATGC 59.993 40.000 0.00 0.00 0.00 3.91
369 370 5.007234 GCCAAGTAATACAACGTATGATGCA 59.993 40.000 0.00 0.00 0.00 3.96
370 371 6.293407 GCCAAGTAATACAACGTATGATGCAT 60.293 38.462 0.00 0.00 0.00 3.96
371 372 7.095397 GCCAAGTAATACAACGTATGATGCATA 60.095 37.037 0.00 0.00 0.00 3.14
372 373 8.935844 CCAAGTAATACAACGTATGATGCATAT 58.064 33.333 0.00 0.00 0.00 1.78
373 374 9.958285 CAAGTAATACAACGTATGATGCATATC 57.042 33.333 0.00 0.00 0.00 1.63
374 375 8.703604 AGTAATACAACGTATGATGCATATCC 57.296 34.615 0.00 0.00 32.09 2.59
375 376 8.531982 AGTAATACAACGTATGATGCATATCCT 58.468 33.333 0.00 0.00 32.09 3.24
376 377 7.834068 AATACAACGTATGATGCATATCCTC 57.166 36.000 0.00 0.00 32.09 3.71
377 378 4.237724 ACAACGTATGATGCATATCCTCG 58.762 43.478 0.00 4.26 32.09 4.63
378 379 4.022329 ACAACGTATGATGCATATCCTCGA 60.022 41.667 0.00 0.00 32.09 4.04
379 380 4.783764 ACGTATGATGCATATCCTCGAA 57.216 40.909 0.00 0.00 32.09 3.71
380 381 4.486090 ACGTATGATGCATATCCTCGAAC 58.514 43.478 0.00 0.00 32.09 3.95
381 382 3.543889 CGTATGATGCATATCCTCGAACG 59.456 47.826 0.00 0.00 32.09 3.95
382 383 3.942130 ATGATGCATATCCTCGAACGA 57.058 42.857 0.00 0.00 32.09 3.85
383 384 3.288809 TGATGCATATCCTCGAACGAG 57.711 47.619 15.94 15.94 41.63 4.18
384 385 2.623416 TGATGCATATCCTCGAACGAGT 59.377 45.455 20.09 7.78 40.44 4.18
385 386 2.492019 TGCATATCCTCGAACGAGTG 57.508 50.000 20.09 13.61 40.44 3.51
386 387 1.067060 TGCATATCCTCGAACGAGTGG 59.933 52.381 20.09 9.29 40.44 4.00
387 388 1.337071 GCATATCCTCGAACGAGTGGA 59.663 52.381 20.09 13.77 40.44 4.02
388 389 2.859032 GCATATCCTCGAACGAGTGGAC 60.859 54.545 20.09 4.16 40.44 4.02
389 390 1.012086 TATCCTCGAACGAGTGGACG 58.988 55.000 20.09 7.15 40.44 4.79
390 391 1.654954 ATCCTCGAACGAGTGGACGG 61.655 60.000 20.09 7.37 40.44 4.79
391 392 2.504244 CTCGAACGAGTGGACGGC 60.504 66.667 14.87 0.00 37.47 5.68
392 393 2.979197 CTCGAACGAGTGGACGGCT 61.979 63.158 14.87 0.00 37.47 5.52
393 394 2.504244 CGAACGAGTGGACGGCTC 60.504 66.667 0.00 0.00 37.61 4.70
398 399 2.885861 GAGTGGACGGCTCGTGAT 59.114 61.111 4.94 0.00 41.37 3.06
399 400 2.104267 GAGTGGACGGCTCGTGATA 58.896 57.895 4.94 0.00 41.37 2.15
400 401 0.454600 GAGTGGACGGCTCGTGATAA 59.545 55.000 4.94 0.00 41.37 1.75
401 402 0.172803 AGTGGACGGCTCGTGATAAC 59.827 55.000 4.94 0.00 41.37 1.89
402 403 1.138036 TGGACGGCTCGTGATAACG 59.862 57.895 4.94 0.00 41.37 3.18
403 404 1.138247 GGACGGCTCGTGATAACGT 59.862 57.895 1.71 0.00 41.37 3.99
404 405 1.138047 GGACGGCTCGTGATAACGTG 61.138 60.000 1.71 0.83 41.37 4.49
405 406 0.179181 GACGGCTCGTGATAACGTGA 60.179 55.000 8.86 0.00 41.37 4.35
406 407 0.455633 ACGGCTCGTGATAACGTGAC 60.456 55.000 8.86 4.58 39.18 3.67
407 408 1.138047 CGGCTCGTGATAACGTGACC 61.138 60.000 8.86 8.13 31.70 4.02
408 409 0.108992 GGCTCGTGATAACGTGACCA 60.109 55.000 8.86 0.00 0.00 4.02
409 410 1.269166 GCTCGTGATAACGTGACCAG 58.731 55.000 8.86 0.00 0.00 4.00
410 411 1.909376 CTCGTGATAACGTGACCAGG 58.091 55.000 1.71 0.00 0.00 4.45
411 412 0.108992 TCGTGATAACGTGACCAGGC 60.109 55.000 1.71 0.00 0.00 4.85
412 413 1.410737 CGTGATAACGTGACCAGGCG 61.411 60.000 0.00 0.00 0.00 5.52
413 414 0.108992 GTGATAACGTGACCAGGCGA 60.109 55.000 0.00 0.00 0.00 5.54
414 415 0.172578 TGATAACGTGACCAGGCGAG 59.827 55.000 0.00 0.00 0.00 5.03
415 416 1.146358 GATAACGTGACCAGGCGAGC 61.146 60.000 0.00 0.00 0.00 5.03
416 417 1.605058 ATAACGTGACCAGGCGAGCT 61.605 55.000 0.00 0.00 0.00 4.09
417 418 2.209064 TAACGTGACCAGGCGAGCTC 62.209 60.000 2.73 2.73 0.00 4.09
419 420 4.057428 GTGACCAGGCGAGCTCGT 62.057 66.667 34.46 16.85 42.22 4.18
420 421 3.749064 TGACCAGGCGAGCTCGTC 61.749 66.667 32.52 32.52 45.56 4.20
421 422 4.500116 GACCAGGCGAGCTCGTCC 62.500 72.222 35.21 32.30 46.54 4.79
423 424 4.803426 CCAGGCGAGCTCGTCCAC 62.803 72.222 34.89 24.54 46.54 4.02
428 429 4.717629 CGAGCTCGTCCACGCCAA 62.718 66.667 27.79 0.00 39.60 4.52
429 430 2.125512 GAGCTCGTCCACGCCAAT 60.126 61.111 0.00 0.00 39.60 3.16
430 431 2.434884 AGCTCGTCCACGCCAATG 60.435 61.111 0.00 0.00 39.60 2.82
431 432 2.434185 GCTCGTCCACGCCAATGA 60.434 61.111 0.00 0.00 39.60 2.57
432 433 2.456119 GCTCGTCCACGCCAATGAG 61.456 63.158 0.00 0.00 39.60 2.90
433 434 1.079819 CTCGTCCACGCCAATGAGT 60.080 57.895 0.00 0.00 39.60 3.41
434 435 0.670546 CTCGTCCACGCCAATGAGTT 60.671 55.000 0.00 0.00 39.60 3.01
435 436 0.250124 TCGTCCACGCCAATGAGTTT 60.250 50.000 0.00 0.00 39.60 2.66
436 437 0.591170 CGTCCACGCCAATGAGTTTT 59.409 50.000 0.00 0.00 0.00 2.43
437 438 1.399727 CGTCCACGCCAATGAGTTTTC 60.400 52.381 0.00 0.00 0.00 2.29
438 439 0.871722 TCCACGCCAATGAGTTTTCG 59.128 50.000 0.00 0.00 0.00 3.46
663 853 1.595109 CTCTGCAACCGTGTCTGCA 60.595 57.895 0.00 0.00 46.01 4.41
820 1027 2.224159 AGCCCGCCTTCTTCCTTCA 61.224 57.895 0.00 0.00 0.00 3.02
841 1048 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
889 1096 1.287730 CGCTTGCTTTCTGTCGCTCT 61.288 55.000 0.00 0.00 0.00 4.09
895 1102 0.171455 CTTTCTGTCGCTCTACCGCT 59.829 55.000 0.00 0.00 0.00 5.52
928 1135 2.644992 CCGCTGTTGACCAAAGGC 59.355 61.111 0.00 0.00 0.00 4.35
936 1143 2.815647 GACCAAAGGCGGCTCGAG 60.816 66.667 13.70 8.45 0.00 4.04
938 1145 4.767255 CCAAAGGCGGCTCGAGCT 62.767 66.667 34.46 14.35 41.70 4.09
947 1154 2.959071 GCTCGAGCTGCTTAGCCG 60.959 66.667 29.88 12.90 38.21 5.52
948 1155 2.279120 CTCGAGCTGCTTAGCCGG 60.279 66.667 2.53 0.00 34.90 6.13
976 1183 0.315251 GCCAGTGCCAAGGTTTCTTC 59.685 55.000 0.00 0.00 0.00 2.87
1105 1313 5.123936 TCATCTTGCATCCTCTTCTGATTG 58.876 41.667 0.00 0.00 0.00 2.67
1119 1328 0.895100 TGATTGTCTGCAAGCCCCAC 60.895 55.000 0.00 0.00 40.02 4.61
1171 1380 1.940613 GTAATTCACCGCATCCCTGTC 59.059 52.381 0.00 0.00 0.00 3.51
1367 1576 7.606456 TGGATCCTTTTGTGTTCACTTATACTC 59.394 37.037 14.23 0.00 0.00 2.59
1423 1632 7.959175 ATCACTAAAGTAGTGGTCTAAACACA 58.041 34.615 13.91 0.00 46.78 3.72
1493 1702 4.696877 CAGAAGACACATGCCATGAGTTTA 59.303 41.667 12.53 0.00 34.21 2.01
1496 1705 2.083774 ACACATGCCATGAGTTTACGG 58.916 47.619 12.53 0.00 29.63 4.02
1511 1720 8.031848 TGAGTTTACGGTTACATGGTTTAATC 57.968 34.615 0.00 0.00 0.00 1.75
1599 1808 3.171348 GGGAAGCCCAGGTTCTGT 58.829 61.111 6.50 0.00 44.65 3.41
1642 1851 2.840651 AGTAGGCTCTTTGGCACTACAT 59.159 45.455 11.71 0.00 44.55 2.29
1752 1986 3.862877 AATATAGATGGCTGTGGTGCA 57.137 42.857 0.00 0.00 34.04 4.57
1782 2016 2.380084 TTTCTGATGGCTGGACGTAC 57.620 50.000 0.00 0.00 0.00 3.67
2008 2256 4.271291 GCTTTCGACTTCAAGTTCTTCACT 59.729 41.667 0.00 0.00 37.30 3.41
2155 2403 7.096230 GCTGACAAACAAACCACATGTAAATAC 60.096 37.037 0.00 0.00 0.00 1.89
2241 2489 4.439700 GGATTGGTCATGCATTCTCTGTTG 60.440 45.833 0.00 0.00 0.00 3.33
2273 2521 8.545420 CCAAGAATGCATTTTATAATTGCACTC 58.455 33.333 19.90 18.76 33.65 3.51
2343 2592 7.255590 GCATATCACAATAGCCCAACATAACTT 60.256 37.037 0.00 0.00 0.00 2.66
2450 2700 2.093394 TGTGGTTCTCGGACAGAAAACA 60.093 45.455 0.00 0.00 43.10 2.83
2609 2861 9.764363 GTCAGTCATATACAAGAATGGTGAATA 57.236 33.333 0.00 0.00 31.34 1.75
2840 3093 1.434555 CCGTCGGATAAACAGTTGCA 58.565 50.000 4.91 0.00 0.00 4.08
2890 3143 7.283127 CAGCAAAGGAATAGGCTATTTTCAGTA 59.717 37.037 20.12 0.00 34.25 2.74
2891 3144 7.500559 AGCAAAGGAATAGGCTATTTTCAGTAG 59.499 37.037 20.12 9.19 34.25 2.57
3095 3361 8.903570 TGCGAAATTAATAACCAACATGTTAG 57.096 30.769 11.53 6.62 34.41 2.34
3264 3534 2.479730 CCTCCGTACATCCGTTTGAGAG 60.480 54.545 0.00 0.00 0.00 3.20
3268 3538 3.571571 CGTACATCCGTTTGAGAGTCAA 58.428 45.455 0.00 0.00 34.03 3.18
3277 3547 4.994852 CCGTTTGAGAGTCAAGTAATTCCA 59.005 41.667 0.00 0.00 37.70 3.53
3278 3548 5.643777 CCGTTTGAGAGTCAAGTAATTCCAT 59.356 40.000 0.00 0.00 37.70 3.41
3281 3551 7.330946 CGTTTGAGAGTCAAGTAATTCCATACA 59.669 37.037 0.00 0.00 37.70 2.29
3286 3556 6.897966 AGAGTCAAGTAATTCCATACAGAGGA 59.102 38.462 0.00 0.00 0.00 3.71
3287 3557 7.566879 AGAGTCAAGTAATTCCATACAGAGGAT 59.433 37.037 0.00 0.00 34.56 3.24
3424 3726 7.221452 GCTTATGAAAGACTGTAAATTGCCATG 59.779 37.037 0.00 0.00 34.37 3.66
3425 3727 4.808558 TGAAAGACTGTAAATTGCCATGC 58.191 39.130 0.00 0.00 0.00 4.06
3440 3742 2.039084 GCCATGCCTTAGCCACTAGTAT 59.961 50.000 0.00 0.00 38.69 2.12
3996 4307 1.068885 GTGAGTGTCAGTGTCTCCGAG 60.069 57.143 9.07 0.00 0.00 4.63
4009 4320 2.812591 GTCTCCGAGCCTACGATTATCA 59.187 50.000 0.00 0.00 35.09 2.15
4019 4330 7.483375 CGAGCCTACGATTATCAAATCTCTTAG 59.517 40.741 0.00 0.00 39.56 2.18
4647 4970 3.738282 GCCGATTGAGTGACACATCTATC 59.262 47.826 8.59 12.10 0.00 2.08
4713 5036 1.918262 TCATCAGGCTCTTCCCATGTT 59.082 47.619 0.00 0.00 34.51 2.71
4875 5198 2.351738 CGGTTCCAATTTCACTCTTGCC 60.352 50.000 0.00 0.00 0.00 4.52
4917 5240 2.943690 CTCAGGCAAGGATCAATCTGTG 59.056 50.000 0.00 0.00 0.00 3.66
4941 5264 3.790123 GCAGCAGTTGTCAGTTGTCTTTC 60.790 47.826 0.00 0.00 0.00 2.62
5034 5357 0.540365 TTTCAAGGGCAGCTCTTGGG 60.540 55.000 30.90 10.43 41.23 4.12
5091 5414 3.755905 TGTGTTTCACTCAACTGCAGAAA 59.244 39.130 23.35 5.79 35.11 2.52
5127 5450 3.250762 GCACACTAAGTTCACAATCAGCA 59.749 43.478 0.00 0.00 0.00 4.41
5220 5543 7.779073 AGGAAGCAAATTCTATCATGGAAAAG 58.221 34.615 0.00 0.00 38.07 2.27
5428 5751 1.154221 GTGCCCCCAAAAGGTACCA 59.846 57.895 15.94 0.00 34.23 3.25
5443 5766 2.170607 GGTACCAGCTCTATGCCAGAAA 59.829 50.000 7.15 0.00 44.23 2.52
5703 6090 1.667236 CAGAACAATGCCGGCATAGA 58.333 50.000 40.54 15.50 35.31 1.98
6154 6554 1.074405 AGAAATGGCAGAAGAGCACCA 59.926 47.619 0.00 0.00 36.43 4.17
6327 6727 5.479027 GGTAACTCCAAAAAGGCCTTTGATA 59.521 40.000 31.02 13.90 38.35 2.15
6328 6728 5.468540 AACTCCAAAAAGGCCTTTGATAC 57.531 39.130 31.02 0.00 38.35 2.24
6465 6867 1.333619 AGGTGTTTGCAAAGTACAGCG 59.666 47.619 20.33 0.00 43.12 5.18
6557 6959 5.888982 ATACTCCCTCCGTTCACAAATAT 57.111 39.130 0.00 0.00 0.00 1.28
6590 6992 5.529581 AACCTTTTTGTGAATCGGATGTT 57.470 34.783 0.00 0.00 0.00 2.71
6606 7008 8.706492 ATCGGATGTTTATAGACACGTTTTAA 57.294 30.769 0.00 0.00 31.30 1.52
6679 7081 5.752955 CCAAAACATCTTTTTGTGAACCGAT 59.247 36.000 8.29 0.00 37.62 4.18
6691 7093 4.813027 TGTGAACCGATGGAGTAGTAAAC 58.187 43.478 0.00 0.00 0.00 2.01
6721 7123 6.878923 TGAAAGATGGTACTGTTCAGTAATGG 59.121 38.462 13.24 0.00 0.00 3.16
6746 7148 6.461927 GCAATAGATGGAATGATGGAAGCAAA 60.462 38.462 0.00 0.00 33.49 3.68
6754 7156 2.368439 TGATGGAAGCAAAGGAATCGG 58.632 47.619 0.00 0.00 0.00 4.18
6880 7352 5.413309 AGGTCTGAGTTGAGTTGGATTAG 57.587 43.478 0.00 0.00 0.00 1.73
6936 7408 2.094494 TCAGAAGTCAGAACTCGGATGC 60.094 50.000 0.00 0.00 33.48 3.91
7034 7506 1.536073 GCTGGTTTTGAAGCTCCCCC 61.536 60.000 0.00 0.00 0.00 5.40
7036 7508 0.178964 TGGTTTTGAAGCTCCCCCTG 60.179 55.000 0.00 0.00 0.00 4.45
7037 7509 1.536073 GGTTTTGAAGCTCCCCCTGC 61.536 60.000 0.00 0.00 0.00 4.85
7038 7510 1.228862 TTTTGAAGCTCCCCCTGCC 60.229 57.895 0.00 0.00 0.00 4.85
7039 7511 1.729267 TTTTGAAGCTCCCCCTGCCT 61.729 55.000 0.00 0.00 0.00 4.75
7043 7515 3.950861 AAGCTCCCCCTGCCTGCTA 62.951 63.158 0.00 0.00 33.28 3.49
7044 7516 3.871395 GCTCCCCCTGCCTGCTAG 61.871 72.222 0.00 0.00 0.00 3.42
7058 7624 2.736826 GCTAGCTCCTCCCCGCTTT 61.737 63.158 7.70 0.00 37.68 3.51
7059 7625 1.443828 CTAGCTCCTCCCCGCTTTC 59.556 63.158 0.00 0.00 37.68 2.62
7064 7630 4.082523 CCTCCCCGCTTTCGCAGA 62.083 66.667 0.00 0.00 35.30 4.26
7070 7636 2.433145 CGCTTTCGCAGAGCTCCA 60.433 61.111 10.93 0.00 38.43 3.86
7080 7646 4.129737 GAGCTCCACGGCTACGCA 62.130 66.667 0.87 0.00 46.04 5.24
7083 7649 2.808315 CTCCACGGCTACGCATCT 59.192 61.111 0.00 0.00 46.04 2.90
7085 7651 2.279517 CCACGGCTACGCATCTCC 60.280 66.667 0.00 0.00 46.04 3.71
7090 7656 1.834822 GGCTACGCATCTCCCCTCT 60.835 63.158 0.00 0.00 0.00 3.69
7093 7659 0.671251 CTACGCATCTCCCCTCTGTC 59.329 60.000 0.00 0.00 0.00 3.51
7098 7664 2.418910 ATCTCCCCTCTGTCGCGTG 61.419 63.158 5.77 0.00 0.00 5.34
7144 7710 2.606587 CCCTAGCCCTGTTGGTGCT 61.607 63.158 0.00 0.00 40.93 4.40
7303 7894 4.305539 TCCTGGAAAGAAGATGAATGCA 57.694 40.909 0.00 0.00 0.00 3.96
7378 7972 2.031683 CGTTTTTGTTCGTCTTCTGCCT 59.968 45.455 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.283768 TCTCTTTTGCAAAATCACTATCAACTA 57.716 29.630 24.06 0.00 0.00 2.24
3 4 8.169977 TCTCTTTTGCAAAATCACTATCAACT 57.830 30.769 24.06 0.00 0.00 3.16
4 5 8.801715 TTCTCTTTTGCAAAATCACTATCAAC 57.198 30.769 24.06 0.00 0.00 3.18
46 47 9.813080 CAAAAAGTTTACGACAAAATCCAAAAA 57.187 25.926 0.00 0.00 0.00 1.94
47 48 8.989980 ACAAAAAGTTTACGACAAAATCCAAAA 58.010 25.926 0.00 0.00 0.00 2.44
48 49 8.535690 ACAAAAAGTTTACGACAAAATCCAAA 57.464 26.923 0.00 0.00 0.00 3.28
49 50 8.535690 AACAAAAAGTTTACGACAAAATCCAA 57.464 26.923 0.00 0.00 37.03 3.53
62 63 9.771534 CCATCCAGGATAAAAACAAAAAGTTTA 57.228 29.630 0.00 0.00 44.73 2.01
63 64 8.271458 ACCATCCAGGATAAAAACAAAAAGTTT 58.729 29.630 0.00 0.00 46.40 2.66
64 65 7.801104 ACCATCCAGGATAAAAACAAAAAGTT 58.199 30.769 0.00 0.00 40.68 2.66
65 66 7.373617 ACCATCCAGGATAAAAACAAAAAGT 57.626 32.000 0.00 0.00 41.22 2.66
66 67 8.585018 ACTACCATCCAGGATAAAAACAAAAAG 58.415 33.333 0.00 0.00 41.22 2.27
67 68 8.485578 ACTACCATCCAGGATAAAAACAAAAA 57.514 30.769 0.00 0.00 41.22 1.94
68 69 9.238368 CTACTACCATCCAGGATAAAAACAAAA 57.762 33.333 0.00 0.00 41.22 2.44
69 70 7.338449 GCTACTACCATCCAGGATAAAAACAAA 59.662 37.037 0.00 0.00 41.22 2.83
70 71 6.826741 GCTACTACCATCCAGGATAAAAACAA 59.173 38.462 0.00 0.00 41.22 2.83
71 72 6.157994 AGCTACTACCATCCAGGATAAAAACA 59.842 38.462 0.00 0.00 41.22 2.83
72 73 6.592870 AGCTACTACCATCCAGGATAAAAAC 58.407 40.000 0.00 0.00 41.22 2.43
73 74 6.385759 TGAGCTACTACCATCCAGGATAAAAA 59.614 38.462 0.00 0.00 41.22 1.94
74 75 5.903010 TGAGCTACTACCATCCAGGATAAAA 59.097 40.000 0.00 0.00 41.22 1.52
75 76 5.464069 TGAGCTACTACCATCCAGGATAAA 58.536 41.667 0.00 0.00 41.22 1.40
76 77 5.074746 TGAGCTACTACCATCCAGGATAA 57.925 43.478 0.00 0.00 41.22 1.75
77 78 4.741928 TGAGCTACTACCATCCAGGATA 57.258 45.455 0.00 0.00 41.22 2.59
78 79 3.619900 TGAGCTACTACCATCCAGGAT 57.380 47.619 0.00 0.00 41.22 3.24
79 80 3.619900 ATGAGCTACTACCATCCAGGA 57.380 47.619 0.00 0.00 41.22 3.86
80 81 3.643320 TCAATGAGCTACTACCATCCAGG 59.357 47.826 0.00 0.00 45.67 4.45
81 82 4.586421 TCTCAATGAGCTACTACCATCCAG 59.414 45.833 5.18 0.00 0.00 3.86
82 83 4.342378 GTCTCAATGAGCTACTACCATCCA 59.658 45.833 5.18 0.00 0.00 3.41
83 84 4.586841 AGTCTCAATGAGCTACTACCATCC 59.413 45.833 5.18 0.00 0.00 3.51
84 85 5.782893 AGTCTCAATGAGCTACTACCATC 57.217 43.478 5.18 0.00 0.00 3.51
85 86 7.847711 ATTAGTCTCAATGAGCTACTACCAT 57.152 36.000 5.18 0.00 0.00 3.55
86 87 8.797438 CATATTAGTCTCAATGAGCTACTACCA 58.203 37.037 5.18 0.88 0.00 3.25
87 88 7.757624 GCATATTAGTCTCAATGAGCTACTACC 59.242 40.741 5.18 2.25 0.00 3.18
88 89 8.519526 AGCATATTAGTCTCAATGAGCTACTAC 58.480 37.037 5.18 0.00 31.63 2.73
89 90 8.642935 AGCATATTAGTCTCAATGAGCTACTA 57.357 34.615 5.18 6.56 31.63 1.82
90 91 7.537596 AGCATATTAGTCTCAATGAGCTACT 57.462 36.000 5.18 7.56 31.63 2.57
91 92 6.526325 CGAGCATATTAGTCTCAATGAGCTAC 59.474 42.308 5.18 0.00 32.77 3.58
92 93 6.616017 CGAGCATATTAGTCTCAATGAGCTA 58.384 40.000 5.18 7.72 32.77 3.32
93 94 5.468592 CGAGCATATTAGTCTCAATGAGCT 58.531 41.667 5.18 8.69 34.26 4.09
94 95 4.091220 GCGAGCATATTAGTCTCAATGAGC 59.909 45.833 5.18 0.99 0.00 4.26
95 96 4.323070 CGCGAGCATATTAGTCTCAATGAG 59.677 45.833 0.00 3.38 0.00 2.90
96 97 4.229876 CGCGAGCATATTAGTCTCAATGA 58.770 43.478 0.00 0.00 0.00 2.57
97 98 3.366121 CCGCGAGCATATTAGTCTCAATG 59.634 47.826 8.23 0.00 0.00 2.82
98 99 3.255888 TCCGCGAGCATATTAGTCTCAAT 59.744 43.478 8.23 0.00 0.00 2.57
99 100 2.621526 TCCGCGAGCATATTAGTCTCAA 59.378 45.455 8.23 0.00 0.00 3.02
100 101 2.227194 TCCGCGAGCATATTAGTCTCA 58.773 47.619 8.23 0.00 0.00 3.27
101 102 2.981140 GTTCCGCGAGCATATTAGTCTC 59.019 50.000 8.23 0.00 0.00 3.36
102 103 2.361119 TGTTCCGCGAGCATATTAGTCT 59.639 45.455 8.23 0.00 0.00 3.24
103 104 2.739292 TGTTCCGCGAGCATATTAGTC 58.261 47.619 8.23 0.00 0.00 2.59
104 105 2.882927 TGTTCCGCGAGCATATTAGT 57.117 45.000 8.23 0.00 0.00 2.24
105 106 4.732285 AAATGTTCCGCGAGCATATTAG 57.268 40.909 8.23 0.00 32.59 1.73
106 107 5.270083 CAAAAATGTTCCGCGAGCATATTA 58.730 37.500 8.23 0.00 32.59 0.98
107 108 4.104776 CAAAAATGTTCCGCGAGCATATT 58.895 39.130 8.23 5.35 32.59 1.28
108 109 3.489059 CCAAAAATGTTCCGCGAGCATAT 60.489 43.478 8.23 0.00 32.59 1.78
109 110 2.159448 CCAAAAATGTTCCGCGAGCATA 60.159 45.455 8.23 0.00 32.59 3.14
110 111 1.402720 CCAAAAATGTTCCGCGAGCAT 60.403 47.619 8.23 5.89 35.11 3.79
111 112 0.039617 CCAAAAATGTTCCGCGAGCA 60.040 50.000 8.23 3.28 0.00 4.26
112 113 0.732538 CCCAAAAATGTTCCGCGAGC 60.733 55.000 8.23 0.00 0.00 5.03
113 114 0.109319 CCCCAAAAATGTTCCGCGAG 60.109 55.000 8.23 0.00 0.00 5.03
114 115 1.528292 CCCCCAAAAATGTTCCGCGA 61.528 55.000 8.23 0.00 0.00 5.87
115 116 1.080161 CCCCCAAAAATGTTCCGCG 60.080 57.895 0.00 0.00 0.00 6.46
116 117 0.901827 ATCCCCCAAAAATGTTCCGC 59.098 50.000 0.00 0.00 0.00 5.54
117 118 1.134175 CGATCCCCCAAAAATGTTCCG 59.866 52.381 0.00 0.00 0.00 4.30
118 119 2.176045 ACGATCCCCCAAAAATGTTCC 58.824 47.619 0.00 0.00 0.00 3.62
119 120 3.953712 AACGATCCCCCAAAAATGTTC 57.046 42.857 0.00 0.00 0.00 3.18
120 121 3.244387 CCAAACGATCCCCCAAAAATGTT 60.244 43.478 0.00 0.00 0.00 2.71
121 122 2.301583 CCAAACGATCCCCCAAAAATGT 59.698 45.455 0.00 0.00 0.00 2.71
122 123 2.934801 GCCAAACGATCCCCCAAAAATG 60.935 50.000 0.00 0.00 0.00 2.32
123 124 1.277842 GCCAAACGATCCCCCAAAAAT 59.722 47.619 0.00 0.00 0.00 1.82
124 125 0.682292 GCCAAACGATCCCCCAAAAA 59.318 50.000 0.00 0.00 0.00 1.94
125 126 0.470080 TGCCAAACGATCCCCCAAAA 60.470 50.000 0.00 0.00 0.00 2.44
126 127 0.897863 CTGCCAAACGATCCCCCAAA 60.898 55.000 0.00 0.00 0.00 3.28
127 128 1.304052 CTGCCAAACGATCCCCCAA 60.304 57.895 0.00 0.00 0.00 4.12
128 129 2.196997 CTCTGCCAAACGATCCCCCA 62.197 60.000 0.00 0.00 0.00 4.96
129 130 1.452108 CTCTGCCAAACGATCCCCC 60.452 63.158 0.00 0.00 0.00 5.40
130 131 0.744771 GTCTCTGCCAAACGATCCCC 60.745 60.000 0.00 0.00 0.00 4.81
131 132 0.250513 AGTCTCTGCCAAACGATCCC 59.749 55.000 0.00 0.00 0.00 3.85
132 133 1.066858 TCAGTCTCTGCCAAACGATCC 60.067 52.381 0.00 0.00 0.00 3.36
133 134 2.266554 CTCAGTCTCTGCCAAACGATC 58.733 52.381 0.00 0.00 0.00 3.69
134 135 1.674221 GCTCAGTCTCTGCCAAACGAT 60.674 52.381 0.00 0.00 0.00 3.73
135 136 0.319900 GCTCAGTCTCTGCCAAACGA 60.320 55.000 0.00 0.00 0.00 3.85
136 137 1.621301 CGCTCAGTCTCTGCCAAACG 61.621 60.000 0.00 0.00 0.00 3.60
137 138 1.294659 CCGCTCAGTCTCTGCCAAAC 61.295 60.000 0.00 0.00 0.00 2.93
138 139 1.004560 CCGCTCAGTCTCTGCCAAA 60.005 57.895 0.00 0.00 0.00 3.28
139 140 2.659016 CCGCTCAGTCTCTGCCAA 59.341 61.111 0.00 0.00 0.00 4.52
140 141 4.074526 GCCGCTCAGTCTCTGCCA 62.075 66.667 0.00 0.00 0.00 4.92
141 142 4.828925 GGCCGCTCAGTCTCTGCC 62.829 72.222 0.00 0.00 0.00 4.85
143 144 3.753434 ACGGCCGCTCAGTCTCTG 61.753 66.667 28.58 0.00 0.00 3.35
144 145 3.753434 CACGGCCGCTCAGTCTCT 61.753 66.667 28.58 0.00 0.00 3.10
145 146 3.691744 CTCACGGCCGCTCAGTCTC 62.692 68.421 28.58 0.00 0.00 3.36
146 147 3.753434 CTCACGGCCGCTCAGTCT 61.753 66.667 28.58 0.00 0.00 3.24
147 148 3.691744 CTCTCACGGCCGCTCAGTC 62.692 68.421 28.58 0.00 0.00 3.51
148 149 3.753434 CTCTCACGGCCGCTCAGT 61.753 66.667 28.58 0.81 0.00 3.41
149 150 3.408501 CTCTCTCACGGCCGCTCAG 62.409 68.421 28.58 18.63 0.00 3.35
150 151 3.443925 CTCTCTCACGGCCGCTCA 61.444 66.667 28.58 8.26 0.00 4.26
151 152 4.863925 GCTCTCTCACGGCCGCTC 62.864 72.222 28.58 1.14 0.00 5.03
154 155 4.838486 GTCGCTCTCTCACGGCCG 62.838 72.222 26.86 26.86 0.00 6.13
155 156 3.282745 TTGTCGCTCTCTCACGGCC 62.283 63.158 0.00 0.00 31.61 6.13
156 157 1.803519 CTTGTCGCTCTCTCACGGC 60.804 63.158 0.00 0.00 0.00 5.68
157 158 0.730834 CACTTGTCGCTCTCTCACGG 60.731 60.000 0.00 0.00 0.00 4.94
158 159 0.730834 CCACTTGTCGCTCTCTCACG 60.731 60.000 0.00 0.00 0.00 4.35
159 160 0.598562 TCCACTTGTCGCTCTCTCAC 59.401 55.000 0.00 0.00 0.00 3.51
160 161 0.884514 CTCCACTTGTCGCTCTCTCA 59.115 55.000 0.00 0.00 0.00 3.27
161 162 0.885196 ACTCCACTTGTCGCTCTCTC 59.115 55.000 0.00 0.00 0.00 3.20
162 163 2.201921 TACTCCACTTGTCGCTCTCT 57.798 50.000 0.00 0.00 0.00 3.10
163 164 3.299340 TTTACTCCACTTGTCGCTCTC 57.701 47.619 0.00 0.00 0.00 3.20
164 165 3.746045 TTTTACTCCACTTGTCGCTCT 57.254 42.857 0.00 0.00 0.00 4.09
165 166 3.125316 CCATTTTACTCCACTTGTCGCTC 59.875 47.826 0.00 0.00 0.00 5.03
166 167 3.074412 CCATTTTACTCCACTTGTCGCT 58.926 45.455 0.00 0.00 0.00 4.93
167 168 3.071479 TCCATTTTACTCCACTTGTCGC 58.929 45.455 0.00 0.00 0.00 5.19
168 169 4.315803 ACTCCATTTTACTCCACTTGTCG 58.684 43.478 0.00 0.00 0.00 4.35
169 170 5.048713 CCAACTCCATTTTACTCCACTTGTC 60.049 44.000 0.00 0.00 0.00 3.18
170 171 4.827284 CCAACTCCATTTTACTCCACTTGT 59.173 41.667 0.00 0.00 0.00 3.16
171 172 4.827284 ACCAACTCCATTTTACTCCACTTG 59.173 41.667 0.00 0.00 0.00 3.16
172 173 4.827284 CACCAACTCCATTTTACTCCACTT 59.173 41.667 0.00 0.00 0.00 3.16
173 174 4.398319 CACCAACTCCATTTTACTCCACT 58.602 43.478 0.00 0.00 0.00 4.00
174 175 3.506067 CCACCAACTCCATTTTACTCCAC 59.494 47.826 0.00 0.00 0.00 4.02
175 176 3.761897 CCACCAACTCCATTTTACTCCA 58.238 45.455 0.00 0.00 0.00 3.86
176 177 2.492088 GCCACCAACTCCATTTTACTCC 59.508 50.000 0.00 0.00 0.00 3.85
177 178 3.153919 TGCCACCAACTCCATTTTACTC 58.846 45.455 0.00 0.00 0.00 2.59
178 179 3.157087 CTGCCACCAACTCCATTTTACT 58.843 45.455 0.00 0.00 0.00 2.24
179 180 3.153919 TCTGCCACCAACTCCATTTTAC 58.846 45.455 0.00 0.00 0.00 2.01
180 181 3.517296 TCTGCCACCAACTCCATTTTA 57.483 42.857 0.00 0.00 0.00 1.52
181 182 2.380064 TCTGCCACCAACTCCATTTT 57.620 45.000 0.00 0.00 0.00 1.82
182 183 2.450476 GATCTGCCACCAACTCCATTT 58.550 47.619 0.00 0.00 0.00 2.32
183 184 1.341383 GGATCTGCCACCAACTCCATT 60.341 52.381 0.00 0.00 36.34 3.16
184 185 0.257039 GGATCTGCCACCAACTCCAT 59.743 55.000 0.00 0.00 36.34 3.41
185 186 1.685224 GGATCTGCCACCAACTCCA 59.315 57.895 0.00 0.00 36.34 3.86
186 187 1.077429 GGGATCTGCCACCAACTCC 60.077 63.158 0.00 0.00 38.95 3.85
187 188 0.393537 CTGGGATCTGCCACCAACTC 60.394 60.000 0.00 0.00 38.95 3.01
188 189 1.687612 CTGGGATCTGCCACCAACT 59.312 57.895 0.00 0.00 38.95 3.16
189 190 2.048603 GCTGGGATCTGCCACCAAC 61.049 63.158 0.00 0.00 38.95 3.77
190 191 2.356278 GCTGGGATCTGCCACCAA 59.644 61.111 0.00 0.00 38.95 3.67
196 197 2.203126 CTTCGGGCTGGGATCTGC 60.203 66.667 0.00 0.00 37.15 4.26
197 198 1.153289 CACTTCGGGCTGGGATCTG 60.153 63.158 0.00 0.00 0.00 2.90
198 199 2.370445 CCACTTCGGGCTGGGATCT 61.370 63.158 0.00 0.00 0.00 2.75
199 200 2.190578 CCACTTCGGGCTGGGATC 59.809 66.667 0.00 0.00 0.00 3.36
200 201 2.285368 TCCACTTCGGGCTGGGAT 60.285 61.111 0.00 0.00 34.36 3.85
201 202 2.449967 TACTCCACTTCGGGCTGGGA 62.450 60.000 0.00 0.00 34.36 4.37
202 203 1.550130 TTACTCCACTTCGGGCTGGG 61.550 60.000 0.00 0.00 34.36 4.45
203 204 0.323629 TTTACTCCACTTCGGGCTGG 59.676 55.000 0.00 0.00 34.36 4.85
204 205 2.178912 TTTTACTCCACTTCGGGCTG 57.821 50.000 0.00 0.00 34.36 4.85
205 206 2.618045 CCATTTTACTCCACTTCGGGCT 60.618 50.000 0.00 0.00 34.36 5.19
206 207 1.743394 CCATTTTACTCCACTTCGGGC 59.257 52.381 0.00 0.00 34.36 6.13
207 208 3.270877 CTCCATTTTACTCCACTTCGGG 58.729 50.000 0.00 0.00 34.36 5.14
208 209 3.933332 GACTCCATTTTACTCCACTTCGG 59.067 47.826 0.00 0.00 0.00 4.30
209 210 3.612860 CGACTCCATTTTACTCCACTTCG 59.387 47.826 0.00 0.00 0.00 3.79
210 211 3.933332 CCGACTCCATTTTACTCCACTTC 59.067 47.826 0.00 0.00 0.00 3.01
211 212 3.326880 ACCGACTCCATTTTACTCCACTT 59.673 43.478 0.00 0.00 0.00 3.16
212 213 2.904434 ACCGACTCCATTTTACTCCACT 59.096 45.455 0.00 0.00 0.00 4.00
213 214 3.000727 CACCGACTCCATTTTACTCCAC 58.999 50.000 0.00 0.00 0.00 4.02
214 215 2.027561 CCACCGACTCCATTTTACTCCA 60.028 50.000 0.00 0.00 0.00 3.86
215 216 2.629051 CCACCGACTCCATTTTACTCC 58.371 52.381 0.00 0.00 0.00 3.85
216 217 2.007608 GCCACCGACTCCATTTTACTC 58.992 52.381 0.00 0.00 0.00 2.59
217 218 1.339727 GGCCACCGACTCCATTTTACT 60.340 52.381 0.00 0.00 0.00 2.24
218 219 1.092348 GGCCACCGACTCCATTTTAC 58.908 55.000 0.00 0.00 0.00 2.01
219 220 3.562397 GGCCACCGACTCCATTTTA 57.438 52.632 0.00 0.00 0.00 1.52
220 221 4.415783 GGCCACCGACTCCATTTT 57.584 55.556 0.00 0.00 0.00 1.82
236 237 2.520982 TAGACGGGCTGGGATCGG 60.521 66.667 0.00 0.00 0.00 4.18
237 238 1.672854 TTGTAGACGGGCTGGGATCG 61.673 60.000 0.00 0.00 0.00 3.69
238 239 0.179081 GTTGTAGACGGGCTGGGATC 60.179 60.000 0.00 0.00 0.00 3.36
239 240 1.623542 GGTTGTAGACGGGCTGGGAT 61.624 60.000 0.00 0.00 0.00 3.85
240 241 2.288025 GGTTGTAGACGGGCTGGGA 61.288 63.158 0.00 0.00 0.00 4.37
241 242 2.267961 GGTTGTAGACGGGCTGGG 59.732 66.667 0.00 0.00 0.00 4.45
242 243 1.910580 ATGGGTTGTAGACGGGCTGG 61.911 60.000 0.00 0.00 0.00 4.85
243 244 0.828022 TATGGGTTGTAGACGGGCTG 59.172 55.000 0.00 0.00 0.00 4.85
244 245 1.208776 GTTATGGGTTGTAGACGGGCT 59.791 52.381 0.00 0.00 0.00 5.19
245 246 1.660167 GTTATGGGTTGTAGACGGGC 58.340 55.000 0.00 0.00 0.00 6.13
246 247 1.472026 CGGTTATGGGTTGTAGACGGG 60.472 57.143 0.00 0.00 0.00 5.28
247 248 1.472026 CCGGTTATGGGTTGTAGACGG 60.472 57.143 0.00 0.00 0.00 4.79
248 249 1.930567 CCGGTTATGGGTTGTAGACG 58.069 55.000 0.00 0.00 0.00 4.18
249 250 1.660167 GCCGGTTATGGGTTGTAGAC 58.340 55.000 1.90 0.00 0.00 2.59
250 251 0.176219 CGCCGGTTATGGGTTGTAGA 59.824 55.000 1.90 0.00 0.00 2.59
251 252 0.108041 ACGCCGGTTATGGGTTGTAG 60.108 55.000 1.90 0.00 0.00 2.74
252 253 0.324285 AACGCCGGTTATGGGTTGTA 59.676 50.000 1.90 0.00 37.47 2.41
253 254 0.324285 TAACGCCGGTTATGGGTTGT 59.676 50.000 1.90 0.00 38.99 3.32
254 255 0.728542 GTAACGCCGGTTATGGGTTG 59.271 55.000 1.90 0.00 40.53 3.77
255 256 0.614812 AGTAACGCCGGTTATGGGTT 59.385 50.000 1.90 0.00 40.53 4.11
256 257 0.614812 AAGTAACGCCGGTTATGGGT 59.385 50.000 1.90 0.00 40.53 4.51
257 258 1.011333 CAAGTAACGCCGGTTATGGG 58.989 55.000 1.90 0.00 40.53 4.00
258 259 0.375803 GCAAGTAACGCCGGTTATGG 59.624 55.000 1.90 0.00 40.53 2.74
259 260 0.375803 GGCAAGTAACGCCGGTTATG 59.624 55.000 1.90 0.00 40.53 1.90
260 261 2.771435 GGCAAGTAACGCCGGTTAT 58.229 52.632 1.90 0.00 40.53 1.89
261 262 4.282399 GGCAAGTAACGCCGGTTA 57.718 55.556 1.90 0.00 40.35 2.85
266 267 1.728074 GCAAACGGCAAGTAACGCC 60.728 57.895 0.00 0.00 46.62 5.68
267 268 3.823450 GCAAACGGCAAGTAACGC 58.177 55.556 0.00 0.00 43.97 4.84
278 279 0.593518 TTGTGCCGATTGTGCAAACG 60.594 50.000 7.46 7.46 41.06 3.60
279 280 0.852136 GTTGTGCCGATTGTGCAAAC 59.148 50.000 0.00 3.21 41.06 2.93
280 281 0.593518 CGTTGTGCCGATTGTGCAAA 60.594 50.000 0.00 0.00 41.06 3.68
281 282 1.009108 CGTTGTGCCGATTGTGCAA 60.009 52.632 0.00 0.00 41.06 4.08
282 283 2.111932 GACGTTGTGCCGATTGTGCA 62.112 55.000 0.00 0.00 36.12 4.57
283 284 1.440353 GACGTTGTGCCGATTGTGC 60.440 57.895 0.00 0.00 0.00 4.57
284 285 0.110688 CTGACGTTGTGCCGATTGTG 60.111 55.000 0.00 0.00 0.00 3.33
285 286 1.841663 GCTGACGTTGTGCCGATTGT 61.842 55.000 0.00 0.00 0.00 2.71
286 287 1.154413 GCTGACGTTGTGCCGATTG 60.154 57.895 0.00 0.00 0.00 2.67
287 288 1.291877 GAGCTGACGTTGTGCCGATT 61.292 55.000 0.00 0.00 0.00 3.34
288 289 1.738099 GAGCTGACGTTGTGCCGAT 60.738 57.895 0.00 0.00 0.00 4.18
289 290 2.355837 GAGCTGACGTTGTGCCGA 60.356 61.111 0.00 0.00 0.00 5.54
290 291 3.414700 GGAGCTGACGTTGTGCCG 61.415 66.667 0.00 0.00 0.00 5.69
291 292 2.029844 GAGGAGCTGACGTTGTGCC 61.030 63.158 0.00 0.00 0.00 5.01
292 293 2.029844 GGAGGAGCTGACGTTGTGC 61.030 63.158 0.00 0.00 0.00 4.57
293 294 1.734477 CGGAGGAGCTGACGTTGTG 60.734 63.158 0.00 0.00 0.00 3.33
294 295 2.651361 CGGAGGAGCTGACGTTGT 59.349 61.111 0.00 0.00 0.00 3.32
307 308 0.469917 ATGCCTATTGTGGACCGGAG 59.530 55.000 9.46 0.00 0.00 4.63
308 309 0.916086 AATGCCTATTGTGGACCGGA 59.084 50.000 9.46 0.00 0.00 5.14
309 310 2.631160 TAATGCCTATTGTGGACCGG 57.369 50.000 0.00 0.00 0.00 5.28
310 311 4.578516 TCATTTAATGCCTATTGTGGACCG 59.421 41.667 0.00 0.00 0.00 4.79
311 312 5.010012 CCTCATTTAATGCCTATTGTGGACC 59.990 44.000 0.00 0.00 0.00 4.46
312 313 5.507985 GCCTCATTTAATGCCTATTGTGGAC 60.508 44.000 0.00 0.00 0.00 4.02
313 314 4.584325 GCCTCATTTAATGCCTATTGTGGA 59.416 41.667 0.00 0.00 0.00 4.02
314 315 4.557296 CGCCTCATTTAATGCCTATTGTGG 60.557 45.833 0.00 0.00 0.00 4.17
315 316 4.539870 CGCCTCATTTAATGCCTATTGTG 58.460 43.478 0.00 0.00 0.00 3.33
316 317 3.004734 GCGCCTCATTTAATGCCTATTGT 59.995 43.478 0.00 0.00 0.00 2.71
317 318 3.568538 GCGCCTCATTTAATGCCTATTG 58.431 45.455 0.00 0.00 0.00 1.90
318 319 2.226437 CGCGCCTCATTTAATGCCTATT 59.774 45.455 0.00 0.00 0.00 1.73
319 320 1.806542 CGCGCCTCATTTAATGCCTAT 59.193 47.619 0.00 0.00 0.00 2.57
320 321 1.225855 CGCGCCTCATTTAATGCCTA 58.774 50.000 0.00 0.00 0.00 3.93
321 322 0.748005 ACGCGCCTCATTTAATGCCT 60.748 50.000 5.73 0.00 0.00 4.75
322 323 0.941542 TACGCGCCTCATTTAATGCC 59.058 50.000 5.73 0.00 0.00 4.40
323 324 1.329292 TGTACGCGCCTCATTTAATGC 59.671 47.619 5.73 0.00 0.00 3.56
324 325 3.544651 CATGTACGCGCCTCATTTAATG 58.455 45.455 5.73 0.00 0.00 1.90
325 326 2.032030 GCATGTACGCGCCTCATTTAAT 60.032 45.455 5.73 0.00 0.00 1.40
326 327 1.329292 GCATGTACGCGCCTCATTTAA 59.671 47.619 5.73 0.00 0.00 1.52
327 328 0.934496 GCATGTACGCGCCTCATTTA 59.066 50.000 5.73 0.00 0.00 1.40
328 329 1.714899 GGCATGTACGCGCCTCATTT 61.715 55.000 16.11 0.00 45.29 2.32
329 330 2.180204 GGCATGTACGCGCCTCATT 61.180 57.895 16.11 0.00 45.29 2.57
330 331 2.588877 GGCATGTACGCGCCTCAT 60.589 61.111 16.11 5.67 45.29 2.90
335 336 0.655733 ATTACTTGGCATGTACGCGC 59.344 50.000 5.73 0.00 0.00 6.86
336 337 2.861335 TGTATTACTTGGCATGTACGCG 59.139 45.455 12.28 3.53 0.00 6.01
337 338 4.584394 GTTGTATTACTTGGCATGTACGC 58.416 43.478 12.28 6.90 0.00 4.42
338 339 4.327898 ACGTTGTATTACTTGGCATGTACG 59.672 41.667 17.35 17.35 0.00 3.67
339 340 5.789710 ACGTTGTATTACTTGGCATGTAC 57.210 39.130 12.28 5.52 0.00 2.90
340 341 7.266400 TCATACGTTGTATTACTTGGCATGTA 58.734 34.615 8.98 8.98 0.00 2.29
341 342 6.110033 TCATACGTTGTATTACTTGGCATGT 58.890 36.000 11.04 11.04 0.00 3.21
342 343 6.597262 TCATACGTTGTATTACTTGGCATG 57.403 37.500 0.00 0.00 0.00 4.06
343 344 6.293407 GCATCATACGTTGTATTACTTGGCAT 60.293 38.462 0.00 0.00 0.00 4.40
344 345 5.007234 GCATCATACGTTGTATTACTTGGCA 59.993 40.000 0.00 0.00 0.00 4.92
345 346 5.007234 TGCATCATACGTTGTATTACTTGGC 59.993 40.000 0.00 0.00 0.00 4.52
346 347 6.597262 TGCATCATACGTTGTATTACTTGG 57.403 37.500 0.00 0.00 0.00 3.61
347 348 9.958285 GATATGCATCATACGTTGTATTACTTG 57.042 33.333 0.19 0.00 0.00 3.16
348 349 9.151471 GGATATGCATCATACGTTGTATTACTT 57.849 33.333 0.19 0.00 32.32 2.24
349 350 8.531982 AGGATATGCATCATACGTTGTATTACT 58.468 33.333 0.19 0.00 32.32 2.24
350 351 8.703604 AGGATATGCATCATACGTTGTATTAC 57.296 34.615 0.19 0.00 32.32 1.89
351 352 7.700656 CGAGGATATGCATCATACGTTGTATTA 59.299 37.037 0.19 0.00 32.32 0.98
352 353 6.531594 CGAGGATATGCATCATACGTTGTATT 59.468 38.462 0.19 0.00 32.32 1.89
353 354 6.036470 CGAGGATATGCATCATACGTTGTAT 58.964 40.000 0.19 0.00 32.32 2.29
354 355 5.182380 TCGAGGATATGCATCATACGTTGTA 59.818 40.000 0.19 0.00 32.32 2.41
355 356 4.022329 TCGAGGATATGCATCATACGTTGT 60.022 41.667 0.19 0.00 32.32 3.32
356 357 4.485163 TCGAGGATATGCATCATACGTTG 58.515 43.478 0.19 0.00 32.32 4.10
357 358 4.783764 TCGAGGATATGCATCATACGTT 57.216 40.909 0.19 0.00 32.32 3.99
358 359 4.486090 GTTCGAGGATATGCATCATACGT 58.514 43.478 0.19 0.00 32.32 3.57
359 360 3.543889 CGTTCGAGGATATGCATCATACG 59.456 47.826 0.19 4.70 32.32 3.06
360 361 4.733850 TCGTTCGAGGATATGCATCATAC 58.266 43.478 0.19 0.00 32.32 2.39
361 362 4.459337 ACTCGTTCGAGGATATGCATCATA 59.541 41.667 22.90 0.00 36.64 2.15
362 363 3.256879 ACTCGTTCGAGGATATGCATCAT 59.743 43.478 22.90 0.00 36.64 2.45
363 364 2.623416 ACTCGTTCGAGGATATGCATCA 59.377 45.455 22.90 0.00 36.64 3.07
364 365 2.983136 CACTCGTTCGAGGATATGCATC 59.017 50.000 22.90 0.00 36.64 3.91
365 366 2.288457 CCACTCGTTCGAGGATATGCAT 60.288 50.000 22.90 3.79 36.64 3.96
366 367 1.067060 CCACTCGTTCGAGGATATGCA 59.933 52.381 22.90 0.00 36.64 3.96
367 368 1.337071 TCCACTCGTTCGAGGATATGC 59.663 52.381 22.90 0.00 36.64 3.14
368 369 2.602456 CGTCCACTCGTTCGAGGATATG 60.602 54.545 22.90 13.29 36.64 1.78
369 370 1.602851 CGTCCACTCGTTCGAGGATAT 59.397 52.381 22.90 2.71 36.64 1.63
370 371 1.012086 CGTCCACTCGTTCGAGGATA 58.988 55.000 22.90 7.61 36.64 2.59
371 372 1.654954 CCGTCCACTCGTTCGAGGAT 61.655 60.000 22.90 3.71 36.64 3.24
372 373 2.330372 CCGTCCACTCGTTCGAGGA 61.330 63.158 22.90 11.97 36.64 3.71
373 374 2.178521 CCGTCCACTCGTTCGAGG 59.821 66.667 22.90 13.22 36.64 4.63
374 375 2.504244 GCCGTCCACTCGTTCGAG 60.504 66.667 18.66 18.66 38.17 4.04
375 376 2.974489 GAGCCGTCCACTCGTTCGA 61.974 63.158 0.00 0.00 0.00 3.71
376 377 2.504244 GAGCCGTCCACTCGTTCG 60.504 66.667 0.00 0.00 0.00 3.95
381 382 0.454600 TTATCACGAGCCGTCCACTC 59.545 55.000 0.00 0.00 38.32 3.51
382 383 0.172803 GTTATCACGAGCCGTCCACT 59.827 55.000 0.00 0.00 38.32 4.00
383 384 2.662150 GTTATCACGAGCCGTCCAC 58.338 57.895 0.00 0.00 38.32 4.02
394 395 0.108992 TCGCCTGGTCACGTTATCAC 60.109 55.000 0.00 0.00 0.00 3.06
395 396 0.172578 CTCGCCTGGTCACGTTATCA 59.827 55.000 0.00 0.00 0.00 2.15
396 397 1.146358 GCTCGCCTGGTCACGTTATC 61.146 60.000 0.00 0.00 0.00 1.75
397 398 1.153628 GCTCGCCTGGTCACGTTAT 60.154 57.895 0.00 0.00 0.00 1.89
398 399 2.209064 GAGCTCGCCTGGTCACGTTA 62.209 60.000 0.00 0.00 34.88 3.18
399 400 3.575351 GAGCTCGCCTGGTCACGTT 62.575 63.158 0.00 0.00 34.88 3.99
400 401 4.057428 GAGCTCGCCTGGTCACGT 62.057 66.667 0.00 0.00 34.88 4.49
402 403 3.973267 GACGAGCTCGCCTGGTCAC 62.973 68.421 34.83 12.57 45.45 3.67
403 404 3.749064 GACGAGCTCGCCTGGTCA 61.749 66.667 34.83 0.00 45.45 4.02
404 405 4.500116 GGACGAGCTCGCCTGGTC 62.500 72.222 34.83 23.38 45.42 4.02
406 407 4.803426 GTGGACGAGCTCGCCTGG 62.803 72.222 33.81 15.25 44.43 4.45
411 412 3.989698 ATTGGCGTGGACGAGCTCG 62.990 63.158 33.45 33.45 43.02 5.03
412 413 2.125512 ATTGGCGTGGACGAGCTC 60.126 61.111 2.73 2.73 43.02 4.09
413 414 2.434884 CATTGGCGTGGACGAGCT 60.435 61.111 2.73 0.00 43.02 4.09
414 415 2.434185 TCATTGGCGTGGACGAGC 60.434 61.111 2.73 0.00 43.02 5.03
415 416 0.670546 AACTCATTGGCGTGGACGAG 60.671 55.000 2.73 0.00 43.02 4.18
416 417 0.250124 AAACTCATTGGCGTGGACGA 60.250 50.000 2.73 0.00 43.02 4.20
417 418 0.591170 AAAACTCATTGGCGTGGACG 59.409 50.000 0.00 0.00 43.27 4.79
418 419 1.399727 CGAAAACTCATTGGCGTGGAC 60.400 52.381 0.00 0.00 0.00 4.02
419 420 0.871722 CGAAAACTCATTGGCGTGGA 59.128 50.000 0.00 0.00 0.00 4.02
420 421 0.871722 TCGAAAACTCATTGGCGTGG 59.128 50.000 0.00 0.00 0.00 4.94
421 422 2.286713 TGTTCGAAAACTCATTGGCGTG 60.287 45.455 0.00 0.00 36.30 5.34
422 423 1.944024 TGTTCGAAAACTCATTGGCGT 59.056 42.857 0.00 0.00 36.30 5.68
423 424 2.223144 TCTGTTCGAAAACTCATTGGCG 59.777 45.455 0.00 0.00 36.30 5.69
424 425 3.896648 TCTGTTCGAAAACTCATTGGC 57.103 42.857 0.00 0.00 36.30 4.52
425 426 5.362556 ACATCTGTTCGAAAACTCATTGG 57.637 39.130 0.00 0.00 36.30 3.16
426 427 7.011773 CAGTACATCTGTTCGAAAACTCATTG 58.988 38.462 0.00 0.00 39.17 2.82
427 428 6.347725 GCAGTACATCTGTTCGAAAACTCATT 60.348 38.462 0.00 0.00 45.23 2.57
428 429 5.120830 GCAGTACATCTGTTCGAAAACTCAT 59.879 40.000 0.00 0.00 45.23 2.90
429 430 4.447724 GCAGTACATCTGTTCGAAAACTCA 59.552 41.667 0.00 0.00 45.23 3.41
430 431 4.686554 AGCAGTACATCTGTTCGAAAACTC 59.313 41.667 0.00 0.00 45.23 3.01
431 432 4.632153 AGCAGTACATCTGTTCGAAAACT 58.368 39.130 0.00 0.00 45.23 2.66
432 433 4.992381 AGCAGTACATCTGTTCGAAAAC 57.008 40.909 0.00 0.00 45.23 2.43
433 434 5.534407 TGTAGCAGTACATCTGTTCGAAAA 58.466 37.500 0.00 0.00 45.23 2.29
434 435 5.048294 TCTGTAGCAGTACATCTGTTCGAAA 60.048 40.000 0.00 0.00 45.23 3.46
435 436 4.457949 TCTGTAGCAGTACATCTGTTCGAA 59.542 41.667 0.00 0.00 45.23 3.71
436 437 4.007659 TCTGTAGCAGTACATCTGTTCGA 58.992 43.478 0.00 0.00 45.23 3.71
437 438 4.357018 TCTGTAGCAGTACATCTGTTCG 57.643 45.455 0.00 0.00 45.23 3.95
438 439 5.926542 TGTTTCTGTAGCAGTACATCTGTTC 59.073 40.000 0.00 0.00 45.23 3.18
451 452 1.663161 GCGGCTGTTTGTTTCTGTAGC 60.663 52.381 0.00 0.00 0.00 3.58
663 853 1.335324 GCTTTGCTTTGCTCGACACAT 60.335 47.619 0.00 0.00 0.00 3.21
799 1002 4.803908 GGAAGAAGGCGGGCTGGG 62.804 72.222 4.27 0.00 0.00 4.45
820 1027 1.869452 AGGGAGGGAGGGAGGAAGT 60.869 63.158 0.00 0.00 0.00 3.01
847 1054 1.271127 AAGAAGAGGGGGCAGAGCTC 61.271 60.000 5.27 5.27 0.00 4.09
889 1096 3.490419 GGAGAAAGCGAAAGATAGCGGTA 60.490 47.826 0.00 0.00 37.23 4.02
895 1102 1.480954 AGCGGGAGAAAGCGAAAGATA 59.519 47.619 0.00 0.00 38.61 1.98
928 1135 2.959071 GCTAAGCAGCTCGAGCCG 60.959 66.667 32.94 24.89 44.93 5.52
937 1144 2.187946 CACCCTCCGGCTAAGCAG 59.812 66.667 0.00 0.00 0.00 4.24
938 1145 4.096003 GCACCCTCCGGCTAAGCA 62.096 66.667 0.00 0.00 0.00 3.91
976 1183 1.993369 GCGGGAAAAAGATCGGGCAG 61.993 60.000 0.00 0.00 0.00 4.85
1105 1313 2.983725 AAGGTGTGGGGCTTGCAGAC 62.984 60.000 0.00 0.00 0.00 3.51
1119 1328 6.293845 CCAAAGAAGAATCACTTGAGAAGGTG 60.294 42.308 0.00 0.00 39.13 4.00
1171 1380 3.724508 AGAACAGATCCGTCTATGCTG 57.275 47.619 0.00 0.00 32.09 4.41
1367 1576 8.487028 ACACTCTTATATTTCTTTACAGAGGGG 58.513 37.037 0.00 0.00 35.07 4.79
1430 1639 9.096823 TCTTGTAGTACTTCCTCCATAAAGAAA 57.903 33.333 0.00 0.00 0.00 2.52
1493 1702 5.873164 GTGAGAGATTAAACCATGTAACCGT 59.127 40.000 0.00 0.00 0.00 4.83
1496 1705 8.779354 AGAAGTGAGAGATTAAACCATGTAAC 57.221 34.615 0.00 0.00 0.00 2.50
1511 1720 3.750652 GGCCTGAAGAAAAGAAGTGAGAG 59.249 47.826 0.00 0.00 0.00 3.20
1599 1808 1.831106 ACACATGATAGCCTGAACGGA 59.169 47.619 0.00 0.00 33.16 4.69
1668 1882 8.154203 TGATTGTATGAAGGTAGTGAAAGAACA 58.846 33.333 0.00 0.00 0.00 3.18
1746 1980 2.038952 AGAAATCTGTAGCACTGCACCA 59.961 45.455 3.30 0.00 0.00 4.17
1752 1986 3.199508 AGCCATCAGAAATCTGTAGCACT 59.800 43.478 17.59 7.12 44.12 4.40
1782 2016 8.594687 GTTTAACATGATTGATCAAATTTCCCG 58.405 33.333 13.09 2.51 40.69 5.14
1973 2221 2.872858 AGTCGAAAGCAACTTCTTGACC 59.127 45.455 0.00 0.00 0.00 4.02
2008 2256 4.845796 TCATTGCTGAGGTGGGATGATATA 59.154 41.667 0.00 0.00 0.00 0.86
2450 2700 4.463050 TTGGGGAAGAAAACCACATACT 57.537 40.909 0.00 0.00 40.70 2.12
2490 2742 6.701841 AGAATATGTATGCCTTCGTGTACTTG 59.298 38.462 0.00 0.00 0.00 3.16
2496 2748 7.946655 TTCTAAGAATATGTATGCCTTCGTG 57.053 36.000 0.00 0.00 0.00 4.35
2609 2861 3.910627 AGGAAATACCAAGTCCAGTGAGT 59.089 43.478 0.00 0.00 42.04 3.41
2840 3093 6.730977 TGAATATAGCTAGGAGGGCTATTTGT 59.269 38.462 12.40 0.94 46.80 2.83
2890 3143 4.137543 GGGTGAACTTTCTTGTGTCATCT 58.862 43.478 0.00 0.00 0.00 2.90
2891 3144 3.882888 TGGGTGAACTTTCTTGTGTCATC 59.117 43.478 0.00 0.00 0.00 2.92
3095 3361 1.202348 GGCCAGAATTGTAACACTGCC 59.798 52.381 0.00 0.00 0.00 4.85
3264 3534 7.275920 ACATCCTCTGTATGGAATTACTTGAC 58.724 38.462 0.00 0.00 35.91 3.18
3268 3538 7.233757 GGAGTACATCCTCTGTATGGAATTACT 59.766 40.741 0.00 0.00 45.64 2.24
3358 3660 7.710044 GGCTTATTTAGTACTCCCTCTGTAAAC 59.290 40.741 0.00 0.00 0.00 2.01
3424 3726 6.753107 TTTGAAAATACTAGTGGCTAAGGC 57.247 37.500 5.39 0.00 37.82 4.35
3425 3727 8.739972 ACAATTTGAAAATACTAGTGGCTAAGG 58.260 33.333 5.39 0.00 0.00 2.69
3467 3769 8.778358 CCTTCACAAATAGATACTTCCATAAGC 58.222 37.037 0.00 0.00 36.05 3.09
3996 4307 7.093992 AGCTAAGAGATTTGATAATCGTAGGC 58.906 38.462 0.00 0.00 43.99 3.93
4009 4320 8.964533 TTCATAGGGATAGAGCTAAGAGATTT 57.035 34.615 0.00 0.00 0.00 2.17
4019 4330 5.669477 CAATAGCCTTCATAGGGATAGAGC 58.331 45.833 0.00 0.00 42.25 4.09
4230 4541 5.071519 CAGTTGACCAGAGGAGGATATGATT 59.928 44.000 0.00 0.00 0.00 2.57
4647 4970 1.072965 AGAGGCCCTTCAACTGAACAG 59.927 52.381 0.00 0.00 0.00 3.16
4695 5018 1.684248 GCAACATGGGAAGAGCCTGAT 60.684 52.381 0.00 0.00 36.66 2.90
4713 5036 4.933505 TCCATTCATTGTCAAAACTGCA 57.066 36.364 0.00 0.00 0.00 4.41
4875 5198 7.435488 CCTGAGATAGACCTATGTAAACAAACG 59.565 40.741 0.00 0.00 0.00 3.60
4917 5240 0.734889 ACAACTGACAACTGCTGCAC 59.265 50.000 0.00 0.00 0.00 4.57
5034 5357 2.426842 ACCTTTTGCTCCTATCTGGC 57.573 50.000 0.00 0.00 35.26 4.85
5091 5414 2.880443 AGTGTGCCATGTCCTTCAATT 58.120 42.857 0.00 0.00 0.00 2.32
5127 5450 7.773945 TGGAAATGCCTCCTCCTTTTGGATT 62.774 44.000 0.00 0.00 42.40 3.01
5220 5543 0.889186 AACCCTGTGCCGTTGTCATC 60.889 55.000 0.00 0.00 0.00 2.92
5428 5751 1.558756 AGCTGTTTCTGGCATAGAGCT 59.441 47.619 9.32 9.32 44.79 4.09
5443 5766 7.693969 ATTCTGCTTTCAAATTAGTAGCTGT 57.306 32.000 0.00 0.00 33.96 4.40
5621 6008 7.781548 ATTAAGATCAATGCTTGCCATTTTC 57.218 32.000 0.00 0.00 42.15 2.29
5628 6015 7.646314 ACATGACTATTAAGATCAATGCTTGC 58.354 34.615 0.00 0.00 0.00 4.01
5647 6034 5.064452 CCTGCTTAGATGAGAACAACATGAC 59.936 44.000 0.00 0.00 0.00 3.06
5649 6036 4.940046 ACCTGCTTAGATGAGAACAACATG 59.060 41.667 0.00 0.00 0.00 3.21
6126 6526 1.667236 TCTGCCATTTCTATGCGTGG 58.333 50.000 0.00 0.00 34.84 4.94
6154 6554 4.127171 CGGCATAGGTATTGCTGTTACTT 58.873 43.478 0.00 0.00 40.77 2.24
6327 6727 8.548877 AGTAAATTATCTAGGGAATGTGTGTGT 58.451 33.333 0.00 0.00 0.00 3.72
6328 6728 8.964476 AGTAAATTATCTAGGGAATGTGTGTG 57.036 34.615 0.00 0.00 0.00 3.82
6465 6867 1.961277 CTGTCACCTGTTCCGTGCC 60.961 63.158 0.00 0.00 0.00 5.01
6606 7008 4.036734 ACTGAAATGAGCGAACAAACACAT 59.963 37.500 0.00 0.00 0.00 3.21
6618 7020 4.683832 ACTACATACGGACTGAAATGAGC 58.316 43.478 7.93 0.00 0.00 4.26
6679 7081 6.474140 TCTTTCAGTGTGTTTACTACTCCA 57.526 37.500 0.00 0.00 0.00 3.86
6691 7093 5.056480 TGAACAGTACCATCTTTCAGTGTG 58.944 41.667 0.00 0.00 0.00 3.82
6721 7123 4.521639 TGCTTCCATCATTCCATCTATTGC 59.478 41.667 0.00 0.00 0.00 3.56
6746 7148 4.207165 CAAATAATGGTGTCCCGATTCCT 58.793 43.478 0.00 0.00 0.00 3.36
6790 7192 7.359181 GCAAGTGGTAATGTTGCAATTTAGTTC 60.359 37.037 0.59 0.00 44.87 3.01
6809 7211 2.424601 CCATGGAGTACAATGCAAGTGG 59.575 50.000 5.56 0.00 35.33 4.00
6880 7352 2.439507 TCAAGAGGAGGCATCATAACCC 59.560 50.000 0.00 0.00 0.00 4.11
6914 7386 3.768406 CATCCGAGTTCTGACTTCTGAG 58.232 50.000 0.00 0.00 35.88 3.35
6915 7387 2.094494 GCATCCGAGTTCTGACTTCTGA 60.094 50.000 0.00 0.00 35.88 3.27
6916 7388 2.266554 GCATCCGAGTTCTGACTTCTG 58.733 52.381 0.00 0.00 35.88 3.02
6917 7389 1.895798 TGCATCCGAGTTCTGACTTCT 59.104 47.619 0.00 0.00 35.88 2.85
6918 7390 2.370281 TGCATCCGAGTTCTGACTTC 57.630 50.000 0.00 0.00 35.88 3.01
6919 7391 2.037772 ACTTGCATCCGAGTTCTGACTT 59.962 45.455 0.00 0.00 35.88 3.01
6920 7392 1.620819 ACTTGCATCCGAGTTCTGACT 59.379 47.619 0.00 0.00 39.32 3.41
6921 7393 2.086054 ACTTGCATCCGAGTTCTGAC 57.914 50.000 0.00 0.00 31.43 3.51
6936 7408 6.151691 CCAATGAATCCACACTACAAACTTG 58.848 40.000 0.00 0.00 0.00 3.16
7034 7506 2.806009 GGGAGGAGCTAGCAGGCAG 61.806 68.421 18.83 0.00 34.17 4.85
7036 7508 3.555324 GGGGAGGAGCTAGCAGGC 61.555 72.222 18.83 5.58 0.00 4.85
7037 7509 3.230245 CGGGGAGGAGCTAGCAGG 61.230 72.222 18.83 0.00 0.00 4.85
7038 7510 3.922640 GCGGGGAGGAGCTAGCAG 61.923 72.222 18.83 0.00 0.00 4.24
7039 7511 3.984186 AAGCGGGGAGGAGCTAGCA 62.984 63.158 18.83 0.00 43.78 3.49
7043 7515 3.775654 CGAAAGCGGGGAGGAGCT 61.776 66.667 0.00 0.00 46.97 4.09
7059 7625 3.826754 TAGCCGTGGAGCTCTGCG 61.827 66.667 14.64 17.10 43.67 5.18
7080 7646 2.043852 ACGCGACAGAGGGGAGAT 60.044 61.111 15.93 0.00 0.00 2.75
7127 7693 1.377725 CAGCACCAACAGGGCTAGG 60.378 63.158 0.00 0.00 42.05 3.02
7144 7710 1.591059 GCACAATGTTGTTGCGGCA 60.591 52.632 0.00 0.00 39.91 5.69
7303 7894 2.344093 ATACCTGGACTTGGGTCTGT 57.656 50.000 0.00 0.00 41.82 3.41
7378 7972 9.836864 AGTCTGCATTCTGTAAAACATATGATA 57.163 29.630 10.38 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.