Multiple sequence alignment - TraesCS6D01G241300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G241300 chr6D 100.000 1383 0 0 594 1976 343616621 343618003 0.000000e+00 2555.0
1 TraesCS6D01G241300 chr6D 100.000 482 0 0 1 482 343616028 343616509 0.000000e+00 891.0
2 TraesCS6D01G241300 chr6D 100.000 410 0 0 2272 2681 343618299 343618708 0.000000e+00 758.0
3 TraesCS6D01G241300 chr6B 94.424 1345 53 8 594 1933 518591372 518592699 0.000000e+00 2049.0
4 TraesCS6D01G241300 chr6B 94.606 482 23 2 1 482 518590851 518591329 0.000000e+00 743.0
5 TraesCS6D01G241300 chr6A 94.034 1341 59 13 598 1933 484038598 484039922 0.000000e+00 2013.0
6 TraesCS6D01G241300 chr6A 93.197 441 18 4 1 430 484037772 484038211 2.910000e-179 638.0
7 TraesCS6D01G241300 chr4D 92.344 418 24 3 2272 2681 502490798 502491215 2.970000e-164 588.0
8 TraesCS6D01G241300 chr1D 92.701 411 24 3 2272 2681 474021140 474020735 2.970000e-164 588.0
9 TraesCS6D01G241300 chr1D 91.727 411 30 2 2272 2681 251717799 251717392 3.870000e-158 568.0
10 TraesCS6D01G241300 chr1D 91.388 418 28 5 2272 2681 36400148 36400565 1.390000e-157 566.0
11 TraesCS6D01G241300 chr1D 91.566 415 27 3 2275 2681 238648310 238647896 1.390000e-157 566.0
12 TraesCS6D01G241300 chr7D 90.909 418 30 3 2272 2681 51201161 51200744 3.020000e-154 555.0
13 TraesCS6D01G241300 chr7D 90.909 418 29 4 2272 2681 262012 261596 1.080000e-153 553.0
14 TraesCS6D01G241300 chr2D 90.909 418 29 5 2272 2681 209127713 209128129 1.080000e-153 553.0
15 TraesCS6D01G241300 chr2D 90.909 418 29 6 2272 2681 471701741 471701325 1.080000e-153 553.0
16 TraesCS6D01G241300 chr2D 87.931 58 6 1 153 210 540322692 540322748 1.720000e-07 67.6
17 TraesCS6D01G241300 chr2D 86.441 59 7 1 152 210 540334263 540334320 2.230000e-06 63.9
18 TraesCS6D01G241300 chrUn 94.737 38 2 0 166 203 15894707 15894744 2.880000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G241300 chr6D 343616028 343618708 2680 False 1401.333333 2555 100.0000 1 2681 3 chr6D.!!$F1 2680
1 TraesCS6D01G241300 chr6B 518590851 518592699 1848 False 1396.000000 2049 94.5150 1 1933 2 chr6B.!!$F1 1932
2 TraesCS6D01G241300 chr6A 484037772 484039922 2150 False 1325.500000 2013 93.6155 1 1933 2 chr6A.!!$F1 1932

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
961 1197 2.040939 GGGAAAACGGAAGGGGAAAAA 58.959 47.619 0.0 0.0 0.0 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2495 2732 0.031616 AGGAGGGGAGACACCAGATC 60.032 60.0 0.0 0.0 41.2 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 7.051000 TGTTTCCATGAATATGATTGACCGTA 58.949 34.615 0.00 0.00 36.36 4.02
230 236 7.490962 TTCACGTGAGTTGATCTATGTTTTT 57.509 32.000 19.11 0.00 46.40 1.94
257 263 5.174037 ACATGAGTAATCCCTTTTTCCGA 57.826 39.130 0.00 0.00 0.00 4.55
269 275 6.587273 TCCCTTTTTCCGAAAATTCAACAAT 58.413 32.000 7.12 0.00 34.45 2.71
390 404 5.178438 GCAATCCTAGCTAGTTCATAAGCAC 59.822 44.000 19.31 0.00 41.32 4.40
396 410 5.165961 AGCTAGTTCATAAGCACCTGAAA 57.834 39.130 0.00 0.00 41.32 2.69
401 415 5.574188 AGTTCATAAGCACCTGAAATTCCT 58.426 37.500 0.00 0.00 33.45 3.36
435 449 2.679355 TTCAAAACGAACATGCGAGG 57.321 45.000 0.00 0.00 34.83 4.63
666 899 8.745837 GCACGAAAATATGTTCCATATCAAAAG 58.254 33.333 0.00 0.00 0.00 2.27
839 1073 8.844441 AAAGCATGACAATCAAAACAAAAATG 57.156 26.923 0.00 0.00 0.00 2.32
944 1180 6.262056 AGACTAGGACAAAAGAAAAAGGGA 57.738 37.500 0.00 0.00 0.00 4.20
961 1197 2.040939 GGGAAAACGGAAGGGGAAAAA 58.959 47.619 0.00 0.00 0.00 1.94
1206 1443 3.436704 GCCAAGAGATTGAATCAACGACA 59.563 43.478 8.03 0.00 0.00 4.35
1269 1506 4.742201 GGCGCCGTCTTGCTCTCA 62.742 66.667 12.58 0.00 0.00 3.27
1539 1776 4.329545 GGCCGCCTTGGTGACAGA 62.330 66.667 0.71 0.00 44.54 3.41
1644 1881 1.736645 CGGGAGTACACTTGGTGCG 60.737 63.158 0.00 0.00 36.98 5.34
1685 1922 4.963276 TCGAATTGCCCAAGTAATGAAG 57.037 40.909 0.00 0.00 0.00 3.02
1686 1923 3.128589 TCGAATTGCCCAAGTAATGAAGC 59.871 43.478 0.00 0.00 0.00 3.86
1687 1924 3.438360 GAATTGCCCAAGTAATGAAGCG 58.562 45.455 0.00 0.00 32.57 4.68
1688 1925 2.192664 TTGCCCAAGTAATGAAGCGA 57.807 45.000 0.00 0.00 32.57 4.93
1689 1926 2.418368 TGCCCAAGTAATGAAGCGAT 57.582 45.000 0.00 0.00 32.57 4.58
1690 1927 2.288666 TGCCCAAGTAATGAAGCGATC 58.711 47.619 0.00 0.00 32.57 3.69
1691 1928 2.288666 GCCCAAGTAATGAAGCGATCA 58.711 47.619 0.00 0.00 43.67 2.92
1692 1929 2.682856 GCCCAAGTAATGAAGCGATCAA 59.317 45.455 0.00 0.00 42.54 2.57
1889 2126 4.157817 GCACTGCTGCGGAAATTG 57.842 55.556 16.72 3.86 32.44 2.32
1921 2158 0.179029 CCACAAACCACTCCGAACCT 60.179 55.000 0.00 0.00 0.00 3.50
1927 2164 1.129058 ACCACTCCGAACCTTGAGTT 58.871 50.000 0.00 0.00 39.76 3.01
1928 2165 1.202651 ACCACTCCGAACCTTGAGTTG 60.203 52.381 0.00 0.00 39.76 3.16
1930 2167 1.070134 CACTCCGAACCTTGAGTTGGA 59.930 52.381 0.00 0.00 39.76 3.53
1931 2168 1.978580 ACTCCGAACCTTGAGTTGGAT 59.021 47.619 0.00 0.00 38.67 3.41
1932 2169 2.372172 ACTCCGAACCTTGAGTTGGATT 59.628 45.455 0.00 0.00 38.67 3.01
1933 2170 3.003480 CTCCGAACCTTGAGTTGGATTC 58.997 50.000 0.00 0.00 39.40 2.52
1935 2172 3.003480 CCGAACCTTGAGTTGGATTCTC 58.997 50.000 0.00 0.00 39.40 2.87
1936 2173 3.307059 CCGAACCTTGAGTTGGATTCTCT 60.307 47.826 0.00 0.00 39.40 3.10
1937 2174 4.081642 CCGAACCTTGAGTTGGATTCTCTA 60.082 45.833 0.00 0.00 39.40 2.43
1938 2175 5.479306 CGAACCTTGAGTTGGATTCTCTAA 58.521 41.667 0.00 0.00 39.40 2.10
1939 2176 6.109359 CGAACCTTGAGTTGGATTCTCTAAT 58.891 40.000 0.00 0.00 39.40 1.73
1940 2177 6.256757 CGAACCTTGAGTTGGATTCTCTAATC 59.743 42.308 0.00 0.00 39.40 1.75
1941 2178 6.882768 ACCTTGAGTTGGATTCTCTAATCT 57.117 37.500 0.00 0.00 41.18 2.40
1942 2179 6.883744 ACCTTGAGTTGGATTCTCTAATCTC 58.116 40.000 0.00 0.00 41.18 2.75
1943 2180 6.441924 ACCTTGAGTTGGATTCTCTAATCTCA 59.558 38.462 0.00 0.00 41.18 3.27
1944 2181 7.127032 ACCTTGAGTTGGATTCTCTAATCTCAT 59.873 37.037 0.00 0.00 41.18 2.90
1945 2182 7.656948 CCTTGAGTTGGATTCTCTAATCTCATC 59.343 40.741 0.00 0.00 41.18 2.92
1946 2183 7.911130 TGAGTTGGATTCTCTAATCTCATCT 57.089 36.000 0.00 0.00 41.18 2.90
1947 2184 9.426534 TTGAGTTGGATTCTCTAATCTCATCTA 57.573 33.333 0.00 0.00 41.18 1.98
1948 2185 9.426534 TGAGTTGGATTCTCTAATCTCATCTAA 57.573 33.333 0.00 0.00 41.18 2.10
1949 2186 9.912634 GAGTTGGATTCTCTAATCTCATCTAAG 57.087 37.037 0.00 0.00 41.18 2.18
1950 2187 9.432982 AGTTGGATTCTCTAATCTCATCTAAGT 57.567 33.333 0.00 0.00 41.18 2.24
1970 2207 9.998106 TCTAAGTAAGAATTATATGGTCCTTGC 57.002 33.333 0.00 0.00 30.46 4.01
1971 2208 9.778741 CTAAGTAAGAATTATATGGTCCTTGCA 57.221 33.333 0.00 0.00 30.46 4.08
1972 2209 8.451908 AAGTAAGAATTATATGGTCCTTGCAC 57.548 34.615 0.00 0.00 30.46 4.57
1973 2210 6.998673 AGTAAGAATTATATGGTCCTTGCACC 59.001 38.462 0.00 0.00 32.53 5.01
1974 2211 5.653255 AGAATTATATGGTCCTTGCACCT 57.347 39.130 0.00 0.00 37.34 4.00
1975 2212 5.380043 AGAATTATATGGTCCTTGCACCTG 58.620 41.667 0.00 0.00 37.34 4.00
2344 2581 3.710722 CCTCGGTTGCCCTGCTCT 61.711 66.667 0.00 0.00 0.00 4.09
2345 2582 2.435586 CTCGGTTGCCCTGCTCTG 60.436 66.667 0.00 0.00 0.00 3.35
2346 2583 4.704833 TCGGTTGCCCTGCTCTGC 62.705 66.667 0.00 0.00 0.00 4.26
2349 2586 3.730761 GTTGCCCTGCTCTGCGTG 61.731 66.667 0.00 0.00 0.00 5.34
2354 2591 4.020617 CCTGCTCTGCGTGGGGAA 62.021 66.667 0.00 0.00 0.00 3.97
2355 2592 2.743928 CTGCTCTGCGTGGGGAAC 60.744 66.667 0.00 0.00 0.00 3.62
2368 2605 3.231298 GGAACCCCGGATCTGGAG 58.769 66.667 23.02 11.90 0.00 3.86
2369 2606 2.506472 GAACCCCGGATCTGGAGC 59.494 66.667 23.02 4.29 0.00 4.70
2370 2607 3.447025 GAACCCCGGATCTGGAGCG 62.447 68.421 23.02 11.04 0.00 5.03
2387 2624 3.830192 GGCGGCTCCATTGGCAAG 61.830 66.667 5.96 0.00 34.01 4.01
2388 2625 2.751436 GCGGCTCCATTGGCAAGA 60.751 61.111 5.96 0.00 0.00 3.02
2389 2626 3.056313 GCGGCTCCATTGGCAAGAC 62.056 63.158 5.96 0.00 0.00 3.01
2390 2627 1.675310 CGGCTCCATTGGCAAGACA 60.675 57.895 5.96 0.00 0.00 3.41
2391 2628 1.885871 GGCTCCATTGGCAAGACAC 59.114 57.895 5.96 0.00 0.00 3.67
2392 2629 1.503542 GCTCCATTGGCAAGACACG 59.496 57.895 5.96 0.00 0.00 4.49
2393 2630 1.926511 GCTCCATTGGCAAGACACGG 61.927 60.000 5.96 1.22 0.00 4.94
2394 2631 1.926511 CTCCATTGGCAAGACACGGC 61.927 60.000 5.96 0.00 0.00 5.68
2400 2637 4.752879 GCAAGACACGGCCGGCTA 62.753 66.667 31.76 0.00 0.00 3.93
2401 2638 2.509336 CAAGACACGGCCGGCTAG 60.509 66.667 31.76 22.69 0.00 3.42
2402 2639 4.452733 AAGACACGGCCGGCTAGC 62.453 66.667 31.76 13.67 0.00 3.42
2421 2658 4.820744 GCCATGCGGGTGGTGGAT 62.821 66.667 4.76 0.00 41.47 3.41
2422 2659 2.516930 CCATGCGGGTGGTGGATC 60.517 66.667 0.00 0.00 34.94 3.36
2423 2660 2.591753 CATGCGGGTGGTGGATCT 59.408 61.111 0.00 0.00 0.00 2.75
2424 2661 1.820906 CATGCGGGTGGTGGATCTG 60.821 63.158 0.00 0.00 0.00 2.90
2425 2662 3.047807 ATGCGGGTGGTGGATCTGG 62.048 63.158 0.00 0.00 0.00 3.86
2427 2664 4.838152 CGGGTGGTGGATCTGGCG 62.838 72.222 0.00 0.00 0.00 5.69
2428 2665 3.717294 GGGTGGTGGATCTGGCGT 61.717 66.667 0.00 0.00 0.00 5.68
2429 2666 2.125106 GGTGGTGGATCTGGCGTC 60.125 66.667 0.00 0.00 0.00 5.19
2430 2667 2.125106 GTGGTGGATCTGGCGTCC 60.125 66.667 0.00 0.00 36.26 4.79
2431 2668 3.399181 TGGTGGATCTGGCGTCCC 61.399 66.667 0.00 0.00 34.76 4.46
2432 2669 4.530857 GGTGGATCTGGCGTCCCG 62.531 72.222 0.00 0.00 34.76 5.14
2433 2670 4.530857 GTGGATCTGGCGTCCCGG 62.531 72.222 0.00 0.00 38.98 5.73
2456 2693 4.143333 CGAGCGGTGGGATTCGGT 62.143 66.667 0.00 0.00 39.89 4.69
2457 2694 2.511600 GAGCGGTGGGATTCGGTG 60.512 66.667 0.00 0.00 37.23 4.94
2458 2695 4.096003 AGCGGTGGGATTCGGTGG 62.096 66.667 0.00 0.00 35.73 4.61
2459 2696 4.404098 GCGGTGGGATTCGGTGGT 62.404 66.667 0.00 0.00 0.00 4.16
2460 2697 2.125269 CGGTGGGATTCGGTGGTC 60.125 66.667 0.00 0.00 0.00 4.02
2461 2698 2.125269 GGTGGGATTCGGTGGTCG 60.125 66.667 0.00 0.00 40.90 4.79
2462 2699 2.660802 GTGGGATTCGGTGGTCGT 59.339 61.111 0.00 0.00 40.32 4.34
2463 2700 1.004200 GTGGGATTCGGTGGTCGTT 60.004 57.895 0.00 0.00 40.32 3.85
2464 2701 1.004320 TGGGATTCGGTGGTCGTTG 60.004 57.895 0.00 0.00 40.32 4.10
2465 2702 1.743995 GGGATTCGGTGGTCGTTGG 60.744 63.158 0.00 0.00 40.32 3.77
2466 2703 2.396157 GGATTCGGTGGTCGTTGGC 61.396 63.158 0.00 0.00 40.32 4.52
2467 2704 2.736682 GATTCGGTGGTCGTTGGCG 61.737 63.158 0.00 0.00 40.32 5.69
2468 2705 4.973055 TTCGGTGGTCGTTGGCGG 62.973 66.667 0.00 0.00 40.32 6.13
2499 2736 4.796231 GGTCGGTGCACGCGATCT 62.796 66.667 25.80 0.00 43.86 2.75
2500 2737 3.545481 GTCGGTGCACGCGATCTG 61.545 66.667 25.80 0.69 43.86 2.90
2501 2738 4.794439 TCGGTGCACGCGATCTGG 62.794 66.667 21.41 0.00 43.86 3.86
2503 2740 3.490759 GGTGCACGCGATCTGGTG 61.491 66.667 15.93 0.00 37.22 4.17
2504 2741 2.738521 GTGCACGCGATCTGGTGT 60.739 61.111 15.93 0.00 36.54 4.16
2505 2742 2.432456 TGCACGCGATCTGGTGTC 60.432 61.111 15.93 0.00 36.54 3.67
2506 2743 2.125912 GCACGCGATCTGGTGTCT 60.126 61.111 15.93 0.00 36.54 3.41
2507 2744 2.161486 GCACGCGATCTGGTGTCTC 61.161 63.158 15.93 0.00 36.54 3.36
2508 2745 1.517257 CACGCGATCTGGTGTCTCC 60.517 63.158 15.93 0.00 0.00 3.71
2509 2746 2.105128 CGCGATCTGGTGTCTCCC 59.895 66.667 0.00 0.00 34.77 4.30
2510 2747 2.501610 GCGATCTGGTGTCTCCCC 59.498 66.667 0.00 0.00 34.77 4.81
2511 2748 2.060980 GCGATCTGGTGTCTCCCCT 61.061 63.158 0.00 0.00 34.77 4.79
2512 2749 2.022240 GCGATCTGGTGTCTCCCCTC 62.022 65.000 0.00 0.00 34.77 4.30
2513 2750 1.395826 CGATCTGGTGTCTCCCCTCC 61.396 65.000 0.00 0.00 34.77 4.30
2514 2751 0.031616 GATCTGGTGTCTCCCCTCCT 60.032 60.000 0.00 0.00 34.77 3.69
2515 2752 0.031616 ATCTGGTGTCTCCCCTCCTC 60.032 60.000 0.00 0.00 34.77 3.71
2516 2753 1.687493 CTGGTGTCTCCCCTCCTCC 60.687 68.421 0.00 0.00 34.77 4.30
2517 2754 2.365768 GGTGTCTCCCCTCCTCCC 60.366 72.222 0.00 0.00 0.00 4.30
2518 2755 2.760385 GTGTCTCCCCTCCTCCCG 60.760 72.222 0.00 0.00 0.00 5.14
2519 2756 3.273654 TGTCTCCCCTCCTCCCGT 61.274 66.667 0.00 0.00 0.00 5.28
2520 2757 2.760385 GTCTCCCCTCCTCCCGTG 60.760 72.222 0.00 0.00 0.00 4.94
2521 2758 3.273654 TCTCCCCTCCTCCCGTGT 61.274 66.667 0.00 0.00 0.00 4.49
2522 2759 2.284699 CTCCCCTCCTCCCGTGTT 60.285 66.667 0.00 0.00 0.00 3.32
2523 2760 2.284405 TCCCCTCCTCCCGTGTTC 60.284 66.667 0.00 0.00 0.00 3.18
2524 2761 3.771160 CCCCTCCTCCCGTGTTCG 61.771 72.222 0.00 0.00 0.00 3.95
2565 2802 2.815647 CCGCGCTTCCTCTTGGTC 60.816 66.667 5.56 0.00 34.23 4.02
2566 2803 3.181967 CGCGCTTCCTCTTGGTCG 61.182 66.667 5.56 0.00 34.23 4.79
2567 2804 3.491652 GCGCTTCCTCTTGGTCGC 61.492 66.667 0.00 0.00 39.03 5.19
2568 2805 2.815647 CGCTTCCTCTTGGTCGCC 60.816 66.667 0.00 0.00 34.23 5.54
2569 2806 2.815647 GCTTCCTCTTGGTCGCCG 60.816 66.667 0.00 0.00 34.23 6.46
2570 2807 2.125512 CTTCCTCTTGGTCGCCGG 60.126 66.667 0.00 0.00 34.23 6.13
2571 2808 2.920912 TTCCTCTTGGTCGCCGGT 60.921 61.111 1.90 0.00 34.23 5.28
2572 2809 2.450479 CTTCCTCTTGGTCGCCGGTT 62.450 60.000 1.90 0.00 34.23 4.44
2573 2810 2.434359 CCTCTTGGTCGCCGGTTC 60.434 66.667 1.90 0.00 0.00 3.62
2574 2811 2.657237 CTCTTGGTCGCCGGTTCT 59.343 61.111 1.90 0.00 0.00 3.01
2575 2812 1.738099 CTCTTGGTCGCCGGTTCTG 60.738 63.158 1.90 0.00 0.00 3.02
2576 2813 2.030562 CTTGGTCGCCGGTTCTGT 59.969 61.111 1.90 0.00 0.00 3.41
2577 2814 1.180456 TCTTGGTCGCCGGTTCTGTA 61.180 55.000 1.90 0.00 0.00 2.74
2578 2815 1.005867 TTGGTCGCCGGTTCTGTAC 60.006 57.895 1.90 0.00 0.00 2.90
2579 2816 1.746322 TTGGTCGCCGGTTCTGTACA 61.746 55.000 1.90 0.00 0.00 2.90
2580 2817 1.445582 GGTCGCCGGTTCTGTACAG 60.446 63.158 17.17 17.17 0.00 2.74
2581 2818 1.445582 GTCGCCGGTTCTGTACAGG 60.446 63.158 22.48 8.35 44.10 4.00
2582 2819 1.604308 TCGCCGGTTCTGTACAGGA 60.604 57.895 22.48 11.97 44.02 3.86
2583 2820 1.153823 CGCCGGTTCTGTACAGGAG 60.154 63.158 22.48 11.05 44.02 3.69
2584 2821 1.218316 GCCGGTTCTGTACAGGAGG 59.782 63.158 22.48 19.11 44.02 4.30
2585 2822 1.218316 CCGGTTCTGTACAGGAGGC 59.782 63.158 22.48 10.03 44.02 4.70
2586 2823 1.153823 CGGTTCTGTACAGGAGGCG 60.154 63.158 22.48 0.00 0.00 5.52
2587 2824 1.448013 GGTTCTGTACAGGAGGCGC 60.448 63.158 22.48 0.00 0.00 6.53
2588 2825 1.592223 GTTCTGTACAGGAGGCGCT 59.408 57.895 22.48 0.00 0.00 5.92
2589 2826 0.737715 GTTCTGTACAGGAGGCGCTG 60.738 60.000 22.48 0.00 0.00 5.18
2590 2827 2.507110 TTCTGTACAGGAGGCGCTGC 62.507 60.000 22.48 0.00 0.00 5.25
2591 2828 2.997315 TGTACAGGAGGCGCTGCT 60.997 61.111 7.64 0.48 30.68 4.24
2604 2841 4.864334 CTGCTGGTGGCGGGGATC 62.864 72.222 0.00 0.00 45.43 3.36
2606 2843 3.161450 GCTGGTGGCGGGGATCTA 61.161 66.667 0.00 0.00 0.00 1.98
2607 2844 3.142393 CTGGTGGCGGGGATCTAG 58.858 66.667 0.00 0.00 0.00 2.43
2608 2845 1.762460 CTGGTGGCGGGGATCTAGT 60.762 63.158 0.00 0.00 0.00 2.57
2609 2846 1.306654 TGGTGGCGGGGATCTAGTT 60.307 57.895 0.00 0.00 0.00 2.24
2610 2847 1.335132 TGGTGGCGGGGATCTAGTTC 61.335 60.000 0.00 0.00 0.00 3.01
2611 2848 1.067582 GTGGCGGGGATCTAGTTCG 59.932 63.158 0.00 0.00 0.00 3.95
2612 2849 2.131709 TGGCGGGGATCTAGTTCGG 61.132 63.158 0.00 0.00 0.00 4.30
2613 2850 2.735237 GCGGGGATCTAGTTCGGG 59.265 66.667 0.00 0.00 0.00 5.14
2614 2851 2.132352 GCGGGGATCTAGTTCGGGT 61.132 63.158 0.00 0.00 0.00 5.28
2615 2852 1.740285 CGGGGATCTAGTTCGGGTG 59.260 63.158 0.00 0.00 0.00 4.61
2616 2853 0.754217 CGGGGATCTAGTTCGGGTGA 60.754 60.000 0.00 0.00 0.00 4.02
2617 2854 1.492764 GGGGATCTAGTTCGGGTGAA 58.507 55.000 0.00 0.00 0.00 3.18
2618 2855 1.835531 GGGGATCTAGTTCGGGTGAAA 59.164 52.381 0.00 0.00 35.46 2.69
2619 2856 2.438392 GGGGATCTAGTTCGGGTGAAAT 59.562 50.000 0.00 0.00 35.46 2.17
2620 2857 3.494573 GGGGATCTAGTTCGGGTGAAATC 60.495 52.174 0.00 0.00 35.46 2.17
2621 2858 3.494573 GGGATCTAGTTCGGGTGAAATCC 60.495 52.174 0.00 0.00 35.46 3.01
2622 2859 3.494573 GGATCTAGTTCGGGTGAAATCCC 60.495 52.174 0.00 0.00 43.78 3.85
2623 2860 2.829023 TCTAGTTCGGGTGAAATCCCT 58.171 47.619 0.25 0.00 44.95 4.20
2624 2861 2.500098 TCTAGTTCGGGTGAAATCCCTG 59.500 50.000 0.25 0.00 44.95 4.45
2625 2862 0.328258 AGTTCGGGTGAAATCCCTGG 59.672 55.000 0.25 0.00 44.95 4.45
2626 2863 1.001393 TTCGGGTGAAATCCCTGGC 60.001 57.895 0.25 0.00 44.95 4.85
2627 2864 2.440247 CGGGTGAAATCCCTGGCC 60.440 66.667 0.00 0.00 44.95 5.36
2628 2865 2.440247 GGGTGAAATCCCTGGCCG 60.440 66.667 0.00 0.00 43.85 6.13
2629 2866 2.440247 GGTGAAATCCCTGGCCGG 60.440 66.667 3.88 3.88 0.00 6.13
2630 2867 3.140814 GTGAAATCCCTGGCCGGC 61.141 66.667 21.18 21.18 0.00 6.13
2631 2868 4.440829 TGAAATCCCTGGCCGGCC 62.441 66.667 39.40 39.40 0.00 6.13
2632 2869 4.440829 GAAATCCCTGGCCGGCCA 62.441 66.667 44.03 44.03 45.02 5.36
2633 2870 3.738745 GAAATCCCTGGCCGGCCAT 62.739 63.158 46.65 32.12 46.15 4.40
2634 2871 4.528039 AATCCCTGGCCGGCCATG 62.528 66.667 46.65 40.94 46.15 3.66
2674 2911 4.452733 CCTGAGGGCGTCGTTCCC 62.453 72.222 2.41 0.00 44.25 3.97
2675 2912 4.452733 CTGAGGGCGTCGTTCCCC 62.453 72.222 4.46 1.51 45.03 4.81
2680 2917 3.703127 GGCGTCGTTCCCCTCCTT 61.703 66.667 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.431420 TGTGTTTTATTTCGCACATGACT 57.569 34.783 0.00 0.00 37.00 3.41
108 109 7.798710 TGGGACCCATTAACAAATTTCATAA 57.201 32.000 9.95 0.00 0.00 1.90
230 236 7.094549 CGGAAAAAGGGATTACTCATGTACAAA 60.095 37.037 0.00 0.00 0.00 2.83
243 249 6.587273 TGTTGAATTTTCGGAAAAAGGGATT 58.413 32.000 18.78 8.98 37.76 3.01
313 327 1.302949 GCCCCTTGTGCATCACCTA 59.697 57.895 0.00 0.00 32.73 3.08
390 404 5.047092 ACTGCCATACAAAAGGAATTTCAGG 60.047 40.000 0.00 0.00 0.00 3.86
396 410 4.832266 TGAACACTGCCATACAAAAGGAAT 59.168 37.500 0.00 0.00 0.00 3.01
401 415 4.800993 CGTTTTGAACACTGCCATACAAAA 59.199 37.500 0.00 0.00 35.75 2.44
435 449 1.066303 CTATCCTATGGCGCGAGATCC 59.934 57.143 12.10 0.65 0.00 3.36
600 833 8.994429 AAGTTGTGTGAACATTTTATTTGACA 57.006 26.923 0.00 0.00 0.00 3.58
894 1129 8.187480 TCATGTGTTTCAACAATAATTATCCCG 58.813 33.333 0.00 0.00 41.21 5.14
944 1180 3.035055 TCCTTTTTCCCCTTCCGTTTT 57.965 42.857 0.00 0.00 0.00 2.43
961 1197 9.546428 CTGTTTTCTTTGGATAACATTTTTCCT 57.454 29.630 0.00 0.00 40.59 3.36
1025 1262 2.427506 ACTGAATTTGGAACGCTCCTC 58.572 47.619 6.39 0.00 42.94 3.71
1206 1443 7.125507 TGGTTGGATGCCATTGATAGTTTATTT 59.874 33.333 0.00 0.00 31.53 1.40
1344 1581 1.000896 GGTGTGGCAGGTGGCTAAT 60.001 57.895 5.03 0.00 44.01 1.73
1470 1707 3.381983 TCCATGAGGACGCGCAGT 61.382 61.111 5.73 6.37 39.61 4.40
1539 1776 4.988716 TCCCTCGGGCAGTCACGT 62.989 66.667 0.00 0.00 34.68 4.49
1644 1881 1.592669 CGTCATCCATCTGCCGGTC 60.593 63.158 1.90 0.00 0.00 4.79
1685 1922 2.196295 AGAGTACTTCGCTTGATCGC 57.804 50.000 0.00 0.00 0.00 4.58
1686 1923 4.275662 CAGTAGAGTACTTCGCTTGATCG 58.724 47.826 0.00 0.00 36.76 3.69
1687 1924 4.602995 CCAGTAGAGTACTTCGCTTGATC 58.397 47.826 0.00 0.00 36.76 2.92
1688 1925 3.181485 GCCAGTAGAGTACTTCGCTTGAT 60.181 47.826 0.00 0.00 36.76 2.57
1689 1926 2.163815 GCCAGTAGAGTACTTCGCTTGA 59.836 50.000 0.00 0.00 36.76 3.02
1690 1927 2.094700 TGCCAGTAGAGTACTTCGCTTG 60.095 50.000 0.00 0.00 36.76 4.01
1691 1928 2.164624 CTGCCAGTAGAGTACTTCGCTT 59.835 50.000 0.00 0.00 36.76 4.68
1692 1929 1.746220 CTGCCAGTAGAGTACTTCGCT 59.254 52.381 0.00 0.00 36.76 4.93
1847 2084 6.567687 TGTACATGAACCGATCACAAATTT 57.432 33.333 0.00 0.00 41.93 1.82
1850 2087 4.142708 GCATGTACATGAACCGATCACAAA 60.143 41.667 34.65 0.00 41.93 2.83
1889 2126 2.253603 GTTTGTGGCGATCAAATCTGC 58.746 47.619 0.00 0.00 37.18 4.26
1921 2158 8.316497 AGATGAGATTAGAGAATCCAACTCAA 57.684 34.615 0.00 0.00 42.25 3.02
1944 2181 9.998106 GCAAGGACCATATAATTCTTACTTAGA 57.002 33.333 0.00 0.00 0.00 2.10
1945 2182 9.778741 TGCAAGGACCATATAATTCTTACTTAG 57.221 33.333 0.00 0.00 0.00 2.18
1946 2183 9.555727 GTGCAAGGACCATATAATTCTTACTTA 57.444 33.333 0.00 0.00 0.00 2.24
1947 2184 7.502561 GGTGCAAGGACCATATAATTCTTACTT 59.497 37.037 5.83 0.00 35.88 2.24
1948 2185 6.998673 GGTGCAAGGACCATATAATTCTTACT 59.001 38.462 5.83 0.00 35.88 2.24
1949 2186 6.998673 AGGTGCAAGGACCATATAATTCTTAC 59.001 38.462 13.37 0.00 38.63 2.34
1950 2187 6.998074 CAGGTGCAAGGACCATATAATTCTTA 59.002 38.462 13.37 0.00 38.63 2.10
1951 2188 5.829924 CAGGTGCAAGGACCATATAATTCTT 59.170 40.000 13.37 0.00 38.63 2.52
1952 2189 5.380043 CAGGTGCAAGGACCATATAATTCT 58.620 41.667 13.37 0.00 38.63 2.40
1953 2190 5.695851 CAGGTGCAAGGACCATATAATTC 57.304 43.478 13.37 0.00 38.63 2.17
2332 2569 3.730761 CACGCAGAGCAGGGCAAC 61.731 66.667 0.00 0.00 0.00 4.17
2337 2574 4.020617 TTCCCCACGCAGAGCAGG 62.021 66.667 0.00 0.00 0.00 4.85
2338 2575 2.743928 GTTCCCCACGCAGAGCAG 60.744 66.667 0.00 0.00 0.00 4.24
2339 2576 4.329545 GGTTCCCCACGCAGAGCA 62.330 66.667 0.00 0.00 0.00 4.26
2349 2586 3.489513 CCAGATCCGGGGTTCCCC 61.490 72.222 16.52 16.52 41.57 4.81
2350 2587 2.366435 TCCAGATCCGGGGTTCCC 60.366 66.667 0.00 0.00 41.09 3.97
2351 2588 3.108288 GCTCCAGATCCGGGGTTCC 62.108 68.421 0.00 0.00 0.00 3.62
2352 2589 2.506472 GCTCCAGATCCGGGGTTC 59.494 66.667 0.00 0.00 0.00 3.62
2353 2590 3.470888 CGCTCCAGATCCGGGGTT 61.471 66.667 0.00 0.00 0.00 4.11
2370 2607 3.830192 CTTGCCAATGGAGCCGCC 61.830 66.667 2.05 0.00 37.10 6.13
2371 2608 2.751436 TCTTGCCAATGGAGCCGC 60.751 61.111 2.05 0.00 0.00 6.53
2372 2609 1.675310 TGTCTTGCCAATGGAGCCG 60.675 57.895 2.05 0.00 0.00 5.52
2373 2610 1.885871 GTGTCTTGCCAATGGAGCC 59.114 57.895 2.05 0.00 0.00 4.70
2374 2611 1.503542 CGTGTCTTGCCAATGGAGC 59.496 57.895 2.05 0.00 0.00 4.70
2375 2612 1.926511 GCCGTGTCTTGCCAATGGAG 61.927 60.000 2.05 0.00 0.00 3.86
2376 2613 1.971167 GCCGTGTCTTGCCAATGGA 60.971 57.895 2.05 0.00 0.00 3.41
2377 2614 2.568090 GCCGTGTCTTGCCAATGG 59.432 61.111 0.00 0.00 0.00 3.16
2383 2620 4.752879 TAGCCGGCCGTGTCTTGC 62.753 66.667 26.15 19.03 0.00 4.01
2384 2621 2.509336 CTAGCCGGCCGTGTCTTG 60.509 66.667 26.15 14.43 0.00 3.02
2385 2622 4.452733 GCTAGCCGGCCGTGTCTT 62.453 66.667 26.15 4.77 0.00 3.01
2397 2634 4.864334 ACCCGCATGGCTGCTAGC 62.864 66.667 8.10 8.10 46.65 3.42
2398 2635 2.898840 CACCCGCATGGCTGCTAG 60.899 66.667 0.00 0.00 46.65 3.42
2399 2636 4.488136 CCACCCGCATGGCTGCTA 62.488 66.667 0.00 0.00 46.65 3.49
2404 2641 4.820744 ATCCACCACCCGCATGGC 62.821 66.667 3.22 0.00 44.33 4.40
2405 2642 2.516930 GATCCACCACCCGCATGG 60.517 66.667 0.00 1.82 46.10 3.66
2406 2643 1.820906 CAGATCCACCACCCGCATG 60.821 63.158 0.00 0.00 0.00 4.06
2407 2644 2.591753 CAGATCCACCACCCGCAT 59.408 61.111 0.00 0.00 0.00 4.73
2408 2645 3.716195 CCAGATCCACCACCCGCA 61.716 66.667 0.00 0.00 0.00 5.69
2410 2647 4.838152 CGCCAGATCCACCACCCG 62.838 72.222 0.00 0.00 0.00 5.28
2411 2648 3.682292 GACGCCAGATCCACCACCC 62.682 68.421 0.00 0.00 0.00 4.61
2412 2649 2.125106 GACGCCAGATCCACCACC 60.125 66.667 0.00 0.00 0.00 4.61
2413 2650 2.125106 GGACGCCAGATCCACCAC 60.125 66.667 0.00 0.00 36.15 4.16
2414 2651 3.399181 GGGACGCCAGATCCACCA 61.399 66.667 0.00 0.00 38.06 4.17
2439 2676 4.143333 ACCGAATCCCACCGCTCG 62.143 66.667 0.00 0.00 0.00 5.03
2440 2677 2.511600 CACCGAATCCCACCGCTC 60.512 66.667 0.00 0.00 0.00 5.03
2441 2678 4.096003 CCACCGAATCCCACCGCT 62.096 66.667 0.00 0.00 0.00 5.52
2442 2679 4.404098 ACCACCGAATCCCACCGC 62.404 66.667 0.00 0.00 0.00 5.68
2443 2680 2.125269 GACCACCGAATCCCACCG 60.125 66.667 0.00 0.00 0.00 4.94
2444 2681 2.125269 CGACCACCGAATCCCACC 60.125 66.667 0.00 0.00 41.76 4.61
2445 2682 1.004200 AACGACCACCGAATCCCAC 60.004 57.895 0.00 0.00 41.76 4.61
2446 2683 1.004320 CAACGACCACCGAATCCCA 60.004 57.895 0.00 0.00 41.76 4.37
2447 2684 1.743995 CCAACGACCACCGAATCCC 60.744 63.158 0.00 0.00 41.76 3.85
2448 2685 2.396157 GCCAACGACCACCGAATCC 61.396 63.158 0.00 0.00 41.76 3.01
2449 2686 2.736682 CGCCAACGACCACCGAATC 61.737 63.158 0.00 0.00 43.93 2.52
2450 2687 2.740826 CGCCAACGACCACCGAAT 60.741 61.111 0.00 0.00 43.93 3.34
2451 2688 4.973055 CCGCCAACGACCACCGAA 62.973 66.667 0.00 0.00 43.93 4.30
2457 2694 4.699522 AAGCCTCCGCCAACGACC 62.700 66.667 0.00 0.00 43.93 4.79
2458 2695 3.119096 GAAGCCTCCGCCAACGAC 61.119 66.667 0.00 0.00 43.93 4.34
2459 2696 3.311110 AGAAGCCTCCGCCAACGA 61.311 61.111 0.00 0.00 43.93 3.85
2460 2697 3.121030 CAGAAGCCTCCGCCAACG 61.121 66.667 0.00 0.00 39.67 4.10
2461 2698 3.435186 GCAGAAGCCTCCGCCAAC 61.435 66.667 0.00 0.00 34.57 3.77
2482 2719 4.796231 AGATCGCGTGCACCGACC 62.796 66.667 25.64 19.42 39.56 4.79
2483 2720 3.545481 CAGATCGCGTGCACCGAC 61.545 66.667 25.64 19.83 39.56 4.79
2484 2721 4.794439 CCAGATCGCGTGCACCGA 62.794 66.667 25.43 25.43 39.56 4.69
2486 2723 3.490759 CACCAGATCGCGTGCACC 61.491 66.667 12.15 3.09 0.00 5.01
2487 2724 2.730672 GACACCAGATCGCGTGCAC 61.731 63.158 6.82 6.82 33.09 4.57
2488 2725 2.432456 GACACCAGATCGCGTGCA 60.432 61.111 5.77 0.00 33.09 4.57
2489 2726 2.125912 AGACACCAGATCGCGTGC 60.126 61.111 5.77 0.00 33.09 5.34
2490 2727 1.517257 GGAGACACCAGATCGCGTG 60.517 63.158 5.77 12.13 38.79 5.34
2491 2728 2.711922 GGGAGACACCAGATCGCGT 61.712 63.158 5.77 0.00 41.20 6.01
2492 2729 2.105128 GGGAGACACCAGATCGCG 59.895 66.667 0.00 0.00 41.20 5.87
2493 2730 2.022240 GAGGGGAGACACCAGATCGC 62.022 65.000 0.00 0.00 41.20 4.58
2494 2731 1.395826 GGAGGGGAGACACCAGATCG 61.396 65.000 0.00 0.00 41.20 3.69
2495 2732 0.031616 AGGAGGGGAGACACCAGATC 60.032 60.000 0.00 0.00 41.20 2.75
2496 2733 0.031616 GAGGAGGGGAGACACCAGAT 60.032 60.000 0.00 0.00 41.20 2.90
2497 2734 1.388531 GAGGAGGGGAGACACCAGA 59.611 63.158 0.00 0.00 41.20 3.86
2498 2735 1.687493 GGAGGAGGGGAGACACCAG 60.687 68.421 0.00 0.00 41.20 4.00
2499 2736 2.450243 GGAGGAGGGGAGACACCA 59.550 66.667 0.00 0.00 41.20 4.17
2500 2737 2.365768 GGGAGGAGGGGAGACACC 60.366 72.222 0.00 0.00 38.08 4.16
2501 2738 2.760385 CGGGAGGAGGGGAGACAC 60.760 72.222 0.00 0.00 0.00 3.67
2502 2739 3.273654 ACGGGAGGAGGGGAGACA 61.274 66.667 0.00 0.00 0.00 3.41
2503 2740 2.760385 CACGGGAGGAGGGGAGAC 60.760 72.222 0.00 0.00 0.00 3.36
2504 2741 2.800159 GAACACGGGAGGAGGGGAGA 62.800 65.000 0.00 0.00 0.00 3.71
2505 2742 2.284699 AACACGGGAGGAGGGGAG 60.285 66.667 0.00 0.00 0.00 4.30
2506 2743 2.284405 GAACACGGGAGGAGGGGA 60.284 66.667 0.00 0.00 0.00 4.81
2507 2744 3.771160 CGAACACGGGAGGAGGGG 61.771 72.222 0.00 0.00 0.00 4.79
2508 2745 3.771160 CCGAACACGGGAGGAGGG 61.771 72.222 0.00 0.00 42.66 4.30
2509 2746 4.452733 GCCGAACACGGGAGGAGG 62.453 72.222 10.55 0.00 45.94 4.30
2510 2747 3.691342 TGCCGAACACGGGAGGAG 61.691 66.667 10.55 0.00 45.94 3.69
2548 2785 2.815647 GACCAAGAGGAAGCGCGG 60.816 66.667 8.83 0.00 38.69 6.46
2549 2786 3.181967 CGACCAAGAGGAAGCGCG 61.182 66.667 0.00 0.00 38.69 6.86
2550 2787 3.491652 GCGACCAAGAGGAAGCGC 61.492 66.667 0.00 0.00 42.39 5.92
2551 2788 2.815647 GGCGACCAAGAGGAAGCG 60.816 66.667 0.00 0.00 40.09 4.68
2552 2789 2.815647 CGGCGACCAAGAGGAAGC 60.816 66.667 0.00 0.00 39.08 3.86
2553 2790 2.125512 CCGGCGACCAAGAGGAAG 60.126 66.667 9.30 0.00 38.69 3.46
2554 2791 2.444700 GAACCGGCGACCAAGAGGAA 62.445 60.000 9.30 0.00 38.69 3.36
2555 2792 2.920912 AACCGGCGACCAAGAGGA 60.921 61.111 9.30 0.00 38.69 3.71
2556 2793 2.434359 GAACCGGCGACCAAGAGG 60.434 66.667 9.30 0.00 42.21 3.69
2557 2794 1.738099 CAGAACCGGCGACCAAGAG 60.738 63.158 9.30 0.00 0.00 2.85
2558 2795 1.180456 TACAGAACCGGCGACCAAGA 61.180 55.000 9.30 0.00 0.00 3.02
2559 2796 1.012486 GTACAGAACCGGCGACCAAG 61.012 60.000 9.30 0.00 0.00 3.61
2560 2797 1.005867 GTACAGAACCGGCGACCAA 60.006 57.895 9.30 0.00 0.00 3.67
2561 2798 2.149803 CTGTACAGAACCGGCGACCA 62.150 60.000 18.45 0.00 0.00 4.02
2562 2799 1.445582 CTGTACAGAACCGGCGACC 60.446 63.158 18.45 0.00 0.00 4.79
2563 2800 1.445582 CCTGTACAGAACCGGCGAC 60.446 63.158 24.68 0.00 0.00 5.19
2564 2801 1.592400 CTCCTGTACAGAACCGGCGA 61.592 60.000 24.68 9.72 32.70 5.54
2565 2802 1.153823 CTCCTGTACAGAACCGGCG 60.154 63.158 24.68 0.00 32.70 6.46
2566 2803 1.218316 CCTCCTGTACAGAACCGGC 59.782 63.158 24.68 0.00 32.70 6.13
2567 2804 1.218316 GCCTCCTGTACAGAACCGG 59.782 63.158 24.68 17.34 33.90 5.28
2568 2805 1.153823 CGCCTCCTGTACAGAACCG 60.154 63.158 24.68 15.72 0.00 4.44
2569 2806 1.448013 GCGCCTCCTGTACAGAACC 60.448 63.158 24.68 8.34 0.00 3.62
2570 2807 0.737715 CAGCGCCTCCTGTACAGAAC 60.738 60.000 24.68 9.07 0.00 3.01
2571 2808 1.591703 CAGCGCCTCCTGTACAGAA 59.408 57.895 24.68 2.15 0.00 3.02
2572 2809 3.006756 GCAGCGCCTCCTGTACAGA 62.007 63.158 24.68 9.38 35.28 3.41
2573 2810 2.510238 GCAGCGCCTCCTGTACAG 60.510 66.667 16.34 16.34 35.28 2.74
2574 2811 2.997315 AGCAGCGCCTCCTGTACA 60.997 61.111 2.29 0.00 35.28 2.90
2575 2812 2.510238 CAGCAGCGCCTCCTGTAC 60.510 66.667 2.29 0.00 35.28 2.90
2576 2813 3.774528 CCAGCAGCGCCTCCTGTA 61.775 66.667 2.29 0.00 35.28 2.74
2587 2824 4.864334 GATCCCCGCCACCAGCAG 62.864 72.222 0.00 0.00 44.04 4.24
2588 2825 3.993865 TAGATCCCCGCCACCAGCA 62.994 63.158 0.00 0.00 44.04 4.41
2589 2826 3.161450 TAGATCCCCGCCACCAGC 61.161 66.667 0.00 0.00 38.52 4.85
2590 2827 1.338136 AACTAGATCCCCGCCACCAG 61.338 60.000 0.00 0.00 0.00 4.00
2591 2828 1.306654 AACTAGATCCCCGCCACCA 60.307 57.895 0.00 0.00 0.00 4.17
2592 2829 1.446366 GAACTAGATCCCCGCCACC 59.554 63.158 0.00 0.00 0.00 4.61
2593 2830 1.067582 CGAACTAGATCCCCGCCAC 59.932 63.158 0.00 0.00 0.00 5.01
2594 2831 2.131709 CCGAACTAGATCCCCGCCA 61.132 63.158 0.00 0.00 0.00 5.69
2595 2832 2.735237 CCGAACTAGATCCCCGCC 59.265 66.667 0.00 0.00 0.00 6.13
2596 2833 2.132352 ACCCGAACTAGATCCCCGC 61.132 63.158 0.00 0.00 0.00 6.13
2597 2834 0.754217 TCACCCGAACTAGATCCCCG 60.754 60.000 0.00 0.00 0.00 5.73
2598 2835 1.492764 TTCACCCGAACTAGATCCCC 58.507 55.000 0.00 0.00 0.00 4.81
2599 2836 3.494573 GGATTTCACCCGAACTAGATCCC 60.495 52.174 0.00 0.00 32.19 3.85
2600 2837 3.494573 GGGATTTCACCCGAACTAGATCC 60.495 52.174 0.00 0.00 40.49 3.36
2601 2838 3.729966 GGGATTTCACCCGAACTAGATC 58.270 50.000 0.00 0.00 40.49 2.75
2602 2839 3.840124 GGGATTTCACCCGAACTAGAT 57.160 47.619 0.00 0.00 40.49 1.98
2612 2849 2.440247 CCGGCCAGGGATTTCACC 60.440 66.667 2.24 0.00 35.97 4.02
2613 2850 3.140814 GCCGGCCAGGGATTTCAC 61.141 66.667 18.11 0.00 41.48 3.18
2614 2851 4.440829 GGCCGGCCAGGGATTTCA 62.441 66.667 40.73 0.00 41.48 2.69
2615 2852 4.440829 TGGCCGGCCAGGGATTTC 62.441 66.667 44.23 15.73 41.89 2.17
2657 2894 4.452733 GGGAACGACGCCCTCAGG 62.453 72.222 3.48 0.00 42.56 3.86
2658 2895 4.452733 GGGGAACGACGCCCTCAG 62.453 72.222 9.99 0.00 45.30 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.