Multiple sequence alignment - TraesCS6D01G240500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G240500 chr6D 100.000 5195 0 0 1 5195 342083663 342078469 0.000000e+00 9594.0
1 TraesCS6D01G240500 chr6D 87.027 370 27 4 4531 4894 248010493 248010847 1.050000e-106 398.0
2 TraesCS6D01G240500 chr6D 85.034 294 27 6 4595 4886 5955945 5956223 3.060000e-72 283.0
3 TraesCS6D01G240500 chr6D 84.694 294 28 6 4595 4886 5949930 5950208 1.420000e-70 278.0
4 TraesCS6D01G240500 chr6D 91.837 49 3 1 2919 2966 93531074 93531122 3.360000e-07 67.6
5 TraesCS6D01G240500 chr6D 78.378 111 10 7 3177 3273 419274696 419274586 5.620000e-05 60.2
6 TraesCS6D01G240500 chr6A 87.674 2369 171 48 522 2810 482094782 482092455 0.000000e+00 2645.0
7 TraesCS6D01G240500 chr6A 87.563 595 35 11 3977 4537 482091549 482090960 0.000000e+00 652.0
8 TraesCS6D01G240500 chr6A 89.908 218 17 2 2964 3181 482092381 482092169 5.120000e-70 276.0
9 TraesCS6D01G240500 chr6A 86.345 249 31 3 3335 3580 482092059 482091811 8.570000e-68 268.0
10 TraesCS6D01G240500 chr6A 92.593 81 2 2 2851 2927 482092460 482092380 4.250000e-21 113.0
11 TraesCS6D01G240500 chr6B 90.925 1168 69 19 522 1662 516525749 516524592 0.000000e+00 1535.0
12 TraesCS6D01G240500 chr6B 89.767 1114 79 22 1661 2769 516524509 516523426 0.000000e+00 1393.0
13 TraesCS6D01G240500 chr6B 83.400 994 57 36 2964 3918 516523314 516522390 0.000000e+00 822.0
14 TraesCS6D01G240500 chr6B 88.029 543 20 16 4015 4537 516522315 516521798 7.440000e-168 601.0
15 TraesCS6D01G240500 chr6B 81.551 374 46 10 4535 4902 458859167 458859523 2.370000e-73 287.0
16 TraesCS6D01G240500 chr6B 97.414 116 3 0 2812 2927 516523428 516523313 1.140000e-46 198.0
17 TraesCS6D01G240500 chr6B 85.000 60 8 1 3177 3236 674946806 674946748 5.620000e-05 60.2
18 TraesCS6D01G240500 chr6B 80.460 87 8 7 3179 3264 516523042 516523120 2.020000e-04 58.4
19 TraesCS6D01G240500 chr3D 87.399 373 22 10 4539 4902 391236384 391236740 6.260000e-109 405.0
20 TraesCS6D01G240500 chr3D 90.066 302 23 4 4898 5194 151442315 151442016 8.160000e-103 385.0
21 TraesCS6D01G240500 chr3D 85.791 373 30 10 4536 4901 151442608 151442252 1.770000e-99 374.0
22 TraesCS6D01G240500 chr3D 92.157 51 2 2 2935 2983 68167971 68168021 2.600000e-08 71.3
23 TraesCS6D01G240500 chr2D 86.737 377 28 11 4531 4901 180494063 180494423 2.910000e-107 399.0
24 TraesCS6D01G240500 chr2D 85.333 375 31 15 4535 4902 114223893 114224250 2.960000e-97 366.0
25 TraesCS6D01G240500 chr2D 97.619 42 1 0 2935 2976 539427319 539427278 7.220000e-09 73.1
26 TraesCS6D01G240500 chr4D 90.492 305 19 7 4898 5195 404059855 404060156 1.360000e-105 394.0
27 TraesCS6D01G240500 chr4D 86.327 373 29 6 4534 4900 415025325 415025681 2.270000e-103 387.0
28 TraesCS6D01G240500 chr4D 89.362 47 5 0 3600 3646 506420192 506420238 5.620000e-05 60.2
29 TraesCS6D01G240500 chr2B 90.429 303 23 5 4898 5195 164898217 164898518 1.360000e-105 394.0
30 TraesCS6D01G240500 chr2B 90.397 302 23 5 4898 5195 440730 440431 4.880000e-105 392.0
31 TraesCS6D01G240500 chr2B 100.000 39 0 0 2935 2973 601206877 601206839 7.220000e-09 73.1
32 TraesCS6D01G240500 chr7D 90.397 302 23 5 4898 5195 520799390 520799689 4.880000e-105 392.0
33 TraesCS6D01G240500 chr7D 86.290 372 28 9 4537 4901 33544516 33544871 2.930000e-102 383.0
34 TraesCS6D01G240500 chr7D 90.033 301 22 5 4898 5195 489347814 489348109 2.930000e-102 383.0
35 TraesCS6D01G240500 chr7D 88.525 61 5 2 3176 3235 56946642 56946701 7.220000e-09 73.1
36 TraesCS6D01G240500 chr3A 90.333 300 23 5 4898 5195 163452294 163451999 6.310000e-104 388.0
37 TraesCS6D01G240500 chr3A 90.132 304 23 6 4898 5195 737600934 737600632 6.310000e-104 388.0
38 TraesCS6D01G240500 chr3A 85.908 369 30 9 4536 4898 163452587 163452235 1.770000e-99 374.0
39 TraesCS6D01G240500 chr3A 85.676 370 33 6 4537 4901 417155426 417155780 6.350000e-99 372.0
40 TraesCS6D01G240500 chr3A 89.583 48 5 0 3600 3647 580599692 580599739 1.560000e-05 62.1
41 TraesCS6D01G240500 chr2A 90.333 300 23 6 4898 5193 767584263 767584560 6.310000e-104 388.0
42 TraesCS6D01G240500 chr2A 100.000 28 0 0 3831 3858 300151608 300151635 9.000000e-03 52.8
43 TraesCS6D01G240500 chr1D 85.714 378 31 8 4532 4902 32418398 32418037 1.370000e-100 377.0
44 TraesCS6D01G240500 chr7A 85.366 369 31 11 4537 4898 261704261 261703909 1.380000e-95 361.0
45 TraesCS6D01G240500 chr7A 85.246 61 7 2 3176 3235 60731070 60731129 1.560000e-05 62.1
46 TraesCS6D01G240500 chr5D 91.093 247 18 4 4537 4781 8756295 8756539 1.080000e-86 331.0
47 TraesCS6D01G240500 chr5D 86.957 92 8 4 3175 3263 439641846 439641756 3.310000e-17 100.0
48 TraesCS6D01G240500 chr5D 80.000 95 9 8 3177 3264 234153249 234153158 1.560000e-05 62.1
49 TraesCS6D01G240500 chr7B 89.286 252 21 5 4535 4782 31829027 31828778 1.400000e-80 311.0
50 TraesCS6D01G240500 chr7B 83.871 93 12 3 677 767 122277633 122277724 9.270000e-13 86.1
51 TraesCS6D01G240500 chr7B 95.455 44 1 1 2935 2978 673996249 673996291 9.330000e-08 69.4
52 TraesCS6D01G240500 chrUn 85.374 294 26 6 4595 4886 401197776 401198054 6.580000e-74 289.0
53 TraesCS6D01G240500 chrUn 85.034 294 27 6 4595 4886 427928584 427928862 3.060000e-72 283.0
54 TraesCS6D01G240500 chrUn 91.667 48 4 0 2927 2974 316483426 316483473 3.360000e-07 67.6
55 TraesCS6D01G240500 chrUn 91.667 48 4 0 2927 2974 327795951 327795998 3.360000e-07 67.6
56 TraesCS6D01G240500 chrUn 91.667 48 4 0 2927 2974 394984246 394984293 3.360000e-07 67.6
57 TraesCS6D01G240500 chrUn 88.889 54 5 1 3177 3230 48473119 48473171 1.210000e-06 65.8
58 TraesCS6D01G240500 chr5B 95.652 46 2 0 2935 2980 527097752 527097797 2.010000e-09 75.0
59 TraesCS6D01G240500 chr5B 88.333 60 5 1 3176 3235 188019575 188019632 2.600000e-08 71.3
60 TraesCS6D01G240500 chr1A 80.189 106 8 6 3180 3272 206793682 206793787 3.360000e-07 67.6
61 TraesCS6D01G240500 chr5A 100.000 28 0 0 3239 3266 707806554 707806581 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G240500 chr6D 342078469 342083663 5194 True 9594.0 9594 100.0000 1 5195 1 chr6D.!!$R1 5194
1 TraesCS6D01G240500 chr6A 482090960 482094782 3822 True 790.8 2645 88.8166 522 4537 5 chr6A.!!$R1 4015
2 TraesCS6D01G240500 chr6B 516521798 516525749 3951 True 909.8 1535 89.9070 522 4537 5 chr6B.!!$R2 4015
3 TraesCS6D01G240500 chr3D 151442016 151442608 592 True 379.5 385 87.9285 4536 5194 2 chr3D.!!$R1 658
4 TraesCS6D01G240500 chr3A 163451999 163452587 588 True 381.0 388 88.1205 4536 5195 2 chr3A.!!$R2 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
771 776 1.067495 GCTTAGGCGAGGTATAGGCAG 60.067 57.143 0.00 0.0 35.18 4.85 F
966 973 1.370064 GTAACCACCGAGCACCAGT 59.630 57.895 0.00 0.0 0.00 4.00 F
1731 1852 1.757118 TGGCATGGCTAGACTGTAGAC 59.243 52.381 21.08 0.0 0.00 2.59 F
2709 2904 0.808755 GGCACCCGTAATTTCCACTG 59.191 55.000 0.00 0.0 0.00 3.66 F
3592 3837 0.031857 TGCACAGTTGGAATTTGGCG 59.968 50.000 0.00 0.0 0.00 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2678 2868 0.106719 CGGGTGCCCCATCAATAGTT 60.107 55.0 10.47 0.00 45.83 2.24 R
2696 2891 0.179200 GCGCACCAGTGGAAATTACG 60.179 55.0 18.40 10.59 0.00 3.18 R
3496 3739 0.028902 GCTGAAAAGTTTCACCGCGT 59.971 50.0 4.92 0.00 41.88 6.01 R
4053 4440 0.102120 TTGCAAAGCACTTGTTCCCG 59.898 50.0 0.00 0.00 38.71 5.14 R
4790 5215 0.036590 TACTTGCCCGTAACAACCCC 59.963 55.0 0.00 0.00 0.00 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.485578 TCTTTTCTTTCCTTCTTCTCTAGTCT 57.514 34.615 0.00 0.00 0.00 3.24
27 28 8.581578 TCTTTTCTTTCCTTCTTCTCTAGTCTC 58.418 37.037 0.00 0.00 0.00 3.36
28 29 6.503589 TTCTTTCCTTCTTCTCTAGTCTCG 57.496 41.667 0.00 0.00 0.00 4.04
29 30 5.562635 TCTTTCCTTCTTCTCTAGTCTCGT 58.437 41.667 0.00 0.00 0.00 4.18
30 31 6.005198 TCTTTCCTTCTTCTCTAGTCTCGTT 58.995 40.000 0.00 0.00 0.00 3.85
31 32 7.166851 TCTTTCCTTCTTCTCTAGTCTCGTTA 58.833 38.462 0.00 0.00 0.00 3.18
32 33 6.988622 TTCCTTCTTCTCTAGTCTCGTTAG 57.011 41.667 0.00 0.00 0.00 2.34
33 34 6.052405 TCCTTCTTCTCTAGTCTCGTTAGT 57.948 41.667 0.00 0.00 0.00 2.24
34 35 6.474630 TCCTTCTTCTCTAGTCTCGTTAGTT 58.525 40.000 0.00 0.00 0.00 2.24
35 36 6.941436 TCCTTCTTCTCTAGTCTCGTTAGTTT 59.059 38.462 0.00 0.00 0.00 2.66
36 37 7.447853 TCCTTCTTCTCTAGTCTCGTTAGTTTT 59.552 37.037 0.00 0.00 0.00 2.43
37 38 7.751793 CCTTCTTCTCTAGTCTCGTTAGTTTTC 59.248 40.741 0.00 0.00 0.00 2.29
38 39 7.982761 TCTTCTCTAGTCTCGTTAGTTTTCT 57.017 36.000 0.00 0.00 0.00 2.52
39 40 8.393671 TCTTCTCTAGTCTCGTTAGTTTTCTT 57.606 34.615 0.00 0.00 0.00 2.52
40 41 8.848182 TCTTCTCTAGTCTCGTTAGTTTTCTTT 58.152 33.333 0.00 0.00 0.00 2.52
41 42 9.465985 CTTCTCTAGTCTCGTTAGTTTTCTTTT 57.534 33.333 0.00 0.00 0.00 2.27
42 43 8.798748 TCTCTAGTCTCGTTAGTTTTCTTTTG 57.201 34.615 0.00 0.00 0.00 2.44
43 44 8.411683 TCTCTAGTCTCGTTAGTTTTCTTTTGT 58.588 33.333 0.00 0.00 0.00 2.83
44 45 8.937634 TCTAGTCTCGTTAGTTTTCTTTTGTT 57.062 30.769 0.00 0.00 0.00 2.83
45 46 9.374838 TCTAGTCTCGTTAGTTTTCTTTTGTTT 57.625 29.630 0.00 0.00 0.00 2.83
46 47 9.422196 CTAGTCTCGTTAGTTTTCTTTTGTTTG 57.578 33.333 0.00 0.00 0.00 2.93
47 48 7.813645 AGTCTCGTTAGTTTTCTTTTGTTTGT 58.186 30.769 0.00 0.00 0.00 2.83
48 49 8.294577 AGTCTCGTTAGTTTTCTTTTGTTTGTT 58.705 29.630 0.00 0.00 0.00 2.83
49 50 8.572976 GTCTCGTTAGTTTTCTTTTGTTTGTTC 58.427 33.333 0.00 0.00 0.00 3.18
50 51 8.508875 TCTCGTTAGTTTTCTTTTGTTTGTTCT 58.491 29.630 0.00 0.00 0.00 3.01
51 52 9.124807 CTCGTTAGTTTTCTTTTGTTTGTTCTT 57.875 29.630 0.00 0.00 0.00 2.52
52 53 8.907685 TCGTTAGTTTTCTTTTGTTTGTTCTTG 58.092 29.630 0.00 0.00 0.00 3.02
53 54 8.159709 CGTTAGTTTTCTTTTGTTTGTTCTTGG 58.840 33.333 0.00 0.00 0.00 3.61
54 55 8.984764 GTTAGTTTTCTTTTGTTTGTTCTTGGT 58.015 29.630 0.00 0.00 0.00 3.67
55 56 9.549078 TTAGTTTTCTTTTGTTTGTTCTTGGTT 57.451 25.926 0.00 0.00 0.00 3.67
56 57 8.445275 AGTTTTCTTTTGTTTGTTCTTGGTTT 57.555 26.923 0.00 0.00 0.00 3.27
57 58 8.898761 AGTTTTCTTTTGTTTGTTCTTGGTTTT 58.101 25.926 0.00 0.00 0.00 2.43
58 59 9.165014 GTTTTCTTTTGTTTGTTCTTGGTTTTC 57.835 29.630 0.00 0.00 0.00 2.29
59 60 8.438676 TTTCTTTTGTTTGTTCTTGGTTTTCA 57.561 26.923 0.00 0.00 0.00 2.69
60 61 7.414814 TCTTTTGTTTGTTCTTGGTTTTCAC 57.585 32.000 0.00 0.00 0.00 3.18
61 62 6.425417 TCTTTTGTTTGTTCTTGGTTTTCACC 59.575 34.615 0.00 0.00 44.56 4.02
76 77 7.997107 GGTTTTCACCGATTTTTCTTTACTT 57.003 32.000 0.00 0.00 31.60 2.24
77 78 8.415192 GGTTTTCACCGATTTTTCTTTACTTT 57.585 30.769 0.00 0.00 31.60 2.66
78 79 8.875803 GGTTTTCACCGATTTTTCTTTACTTTT 58.124 29.630 0.00 0.00 31.60 2.27
79 80 9.683651 GTTTTCACCGATTTTTCTTTACTTTTG 57.316 29.630 0.00 0.00 0.00 2.44
80 81 8.989653 TTTCACCGATTTTTCTTTACTTTTGT 57.010 26.923 0.00 0.00 0.00 2.83
81 82 8.989653 TTCACCGATTTTTCTTTACTTTTGTT 57.010 26.923 0.00 0.00 0.00 2.83
82 83 8.989653 TCACCGATTTTTCTTTACTTTTGTTT 57.010 26.923 0.00 0.00 0.00 2.83
83 84 9.425577 TCACCGATTTTTCTTTACTTTTGTTTT 57.574 25.926 0.00 0.00 0.00 2.43
103 104 9.487790 TTGTTTTTCTTTGTTTCATTCTTCAGT 57.512 25.926 0.00 0.00 0.00 3.41
104 105 9.487790 TGTTTTTCTTTGTTTCATTCTTCAGTT 57.512 25.926 0.00 0.00 0.00 3.16
150 151 8.276252 TCTTAATTTCTATTTCCTTTCACCGG 57.724 34.615 0.00 0.00 0.00 5.28
151 152 7.886446 TCTTAATTTCTATTTCCTTTCACCGGT 59.114 33.333 0.00 0.00 0.00 5.28
152 153 6.911250 AATTTCTATTTCCTTTCACCGGTT 57.089 33.333 2.97 0.00 0.00 4.44
153 154 5.699097 TTTCTATTTCCTTTCACCGGTTG 57.301 39.130 2.97 0.00 0.00 3.77
154 155 4.360951 TCTATTTCCTTTCACCGGTTGT 57.639 40.909 2.97 0.00 0.00 3.32
155 156 4.069304 TCTATTTCCTTTCACCGGTTGTG 58.931 43.478 2.97 0.00 46.88 3.33
156 157 2.131776 TTTCCTTTCACCGGTTGTGT 57.868 45.000 2.97 0.00 45.61 3.72
157 158 2.131776 TTCCTTTCACCGGTTGTGTT 57.868 45.000 2.97 0.00 45.61 3.32
158 159 2.131776 TCCTTTCACCGGTTGTGTTT 57.868 45.000 2.97 0.00 45.61 2.83
159 160 1.746220 TCCTTTCACCGGTTGTGTTTG 59.254 47.619 2.97 0.00 45.61 2.93
160 161 1.202359 CCTTTCACCGGTTGTGTTTGG 60.202 52.381 2.97 0.00 45.61 3.28
161 162 1.474879 CTTTCACCGGTTGTGTTTGGT 59.525 47.619 2.97 0.00 45.61 3.67
162 163 1.546961 TTCACCGGTTGTGTTTGGTT 58.453 45.000 2.97 0.00 45.61 3.67
163 164 1.546961 TCACCGGTTGTGTTTGGTTT 58.453 45.000 2.97 0.00 45.61 3.27
164 165 1.473278 TCACCGGTTGTGTTTGGTTTC 59.527 47.619 2.97 0.00 45.61 2.78
165 166 1.474879 CACCGGTTGTGTTTGGTTTCT 59.525 47.619 2.97 0.00 40.26 2.52
166 167 2.094442 CACCGGTTGTGTTTGGTTTCTT 60.094 45.455 2.97 0.00 40.26 2.52
167 168 2.563620 ACCGGTTGTGTTTGGTTTCTTT 59.436 40.909 0.00 0.00 0.00 2.52
168 169 3.183754 CCGGTTGTGTTTGGTTTCTTTC 58.816 45.455 0.00 0.00 0.00 2.62
169 170 3.119280 CCGGTTGTGTTTGGTTTCTTTCT 60.119 43.478 0.00 0.00 0.00 2.52
170 171 4.490743 CGGTTGTGTTTGGTTTCTTTCTT 58.509 39.130 0.00 0.00 0.00 2.52
171 172 4.926832 CGGTTGTGTTTGGTTTCTTTCTTT 59.073 37.500 0.00 0.00 0.00 2.52
172 173 5.061684 CGGTTGTGTTTGGTTTCTTTCTTTC 59.938 40.000 0.00 0.00 0.00 2.62
173 174 6.163476 GGTTGTGTTTGGTTTCTTTCTTTCT 58.837 36.000 0.00 0.00 0.00 2.52
174 175 6.649141 GGTTGTGTTTGGTTTCTTTCTTTCTT 59.351 34.615 0.00 0.00 0.00 2.52
175 176 7.172532 GGTTGTGTTTGGTTTCTTTCTTTCTTT 59.827 33.333 0.00 0.00 0.00 2.52
176 177 8.556194 GTTGTGTTTGGTTTCTTTCTTTCTTTT 58.444 29.630 0.00 0.00 0.00 2.27
177 178 8.669946 TGTGTTTGGTTTCTTTCTTTCTTTTT 57.330 26.923 0.00 0.00 0.00 1.94
178 179 9.765795 TGTGTTTGGTTTCTTTCTTTCTTTTTA 57.234 25.926 0.00 0.00 0.00 1.52
275 276 9.883142 TTTTAACTTCCATGAACATTTTTCTGT 57.117 25.926 0.00 0.00 0.00 3.41
279 280 8.408043 ACTTCCATGAACATTTTTCTGTATGA 57.592 30.769 0.00 0.00 0.00 2.15
280 281 9.028284 ACTTCCATGAACATTTTTCTGTATGAT 57.972 29.630 0.00 0.00 0.00 2.45
381 382 6.893958 ATAGCTTACATTTCTTGAGACACG 57.106 37.500 0.00 0.00 0.00 4.49
382 383 4.632153 AGCTTACATTTCTTGAGACACGT 58.368 39.130 0.00 0.00 0.00 4.49
383 384 4.449068 AGCTTACATTTCTTGAGACACGTG 59.551 41.667 15.48 15.48 0.00 4.49
384 385 4.447724 GCTTACATTTCTTGAGACACGTGA 59.552 41.667 25.01 0.00 0.00 4.35
385 386 5.050363 GCTTACATTTCTTGAGACACGTGAA 60.050 40.000 25.01 4.74 0.00 3.18
386 387 6.511121 GCTTACATTTCTTGAGACACGTGAAA 60.511 38.462 25.01 10.68 0.00 2.69
387 388 7.490962 TTACATTTCTTGAGACACGTGAAAT 57.509 32.000 25.01 12.60 37.70 2.17
388 389 6.377327 ACATTTCTTGAGACACGTGAAATT 57.623 33.333 25.01 0.00 35.84 1.82
389 390 6.795399 ACATTTCTTGAGACACGTGAAATTT 58.205 32.000 25.01 6.04 35.84 1.82
390 391 7.257722 ACATTTCTTGAGACACGTGAAATTTT 58.742 30.769 25.01 0.00 35.84 1.82
391 392 7.759433 ACATTTCTTGAGACACGTGAAATTTTT 59.241 29.630 25.01 0.00 35.84 1.94
464 465 8.891671 AATCTGACAATTGCTTTACATTTTGT 57.108 26.923 5.05 0.00 37.56 2.83
465 466 8.891671 ATCTGACAATTGCTTTACATTTTGTT 57.108 26.923 5.05 0.00 35.97 2.83
466 467 8.129161 TCTGACAATTGCTTTACATTTTGTTG 57.871 30.769 5.05 0.00 35.97 3.33
467 468 6.713520 TGACAATTGCTTTACATTTTGTTGC 58.286 32.000 5.05 0.00 35.97 4.17
468 469 5.736338 ACAATTGCTTTACATTTTGTTGCG 58.264 33.333 5.05 0.00 33.51 4.85
469 470 5.521735 ACAATTGCTTTACATTTTGTTGCGA 59.478 32.000 5.05 0.00 33.51 5.10
470 471 6.036517 ACAATTGCTTTACATTTTGTTGCGAA 59.963 30.769 5.05 0.00 33.51 4.70
471 472 6.783892 ATTGCTTTACATTTTGTTGCGAAT 57.216 29.167 0.00 0.00 0.00 3.34
472 473 5.573296 TGCTTTACATTTTGTTGCGAATG 57.427 34.783 0.00 0.00 38.79 2.67
473 474 5.284864 TGCTTTACATTTTGTTGCGAATGA 58.715 33.333 3.36 0.00 36.87 2.57
474 475 5.750547 TGCTTTACATTTTGTTGCGAATGAA 59.249 32.000 3.36 0.00 36.87 2.57
475 476 6.064525 GCTTTACATTTTGTTGCGAATGAAC 58.935 36.000 3.36 0.00 36.87 3.18
476 477 6.292061 GCTTTACATTTTGTTGCGAATGAACA 60.292 34.615 3.36 0.00 36.87 3.18
477 478 7.525688 TTTACATTTTGTTGCGAATGAACAA 57.474 28.000 3.36 0.00 40.65 2.83
478 479 7.706281 TTACATTTTGTTGCGAATGAACAAT 57.294 28.000 0.00 0.00 41.66 2.71
479 480 6.601741 ACATTTTGTTGCGAATGAACAATT 57.398 29.167 0.00 0.00 41.66 2.32
480 481 6.648502 ACATTTTGTTGCGAATGAACAATTC 58.351 32.000 0.00 0.00 41.66 2.17
481 482 5.649602 TTTTGTTGCGAATGAACAATTCC 57.350 34.783 0.00 0.00 41.66 3.01
482 483 4.582701 TTGTTGCGAATGAACAATTCCT 57.417 36.364 0.00 0.00 41.55 3.36
483 484 4.582701 TGTTGCGAATGAACAATTCCTT 57.417 36.364 0.00 0.00 41.55 3.36
484 485 4.942852 TGTTGCGAATGAACAATTCCTTT 58.057 34.783 0.00 0.00 41.55 3.11
485 486 6.078202 TGTTGCGAATGAACAATTCCTTTA 57.922 33.333 0.00 0.00 41.55 1.85
486 487 5.918011 TGTTGCGAATGAACAATTCCTTTAC 59.082 36.000 0.00 0.00 41.55 2.01
487 488 5.697473 TGCGAATGAACAATTCCTTTACA 57.303 34.783 0.00 0.00 41.55 2.41
488 489 6.266168 TGCGAATGAACAATTCCTTTACAT 57.734 33.333 0.00 0.00 41.55 2.29
489 490 6.686630 TGCGAATGAACAATTCCTTTACATT 58.313 32.000 0.00 0.00 41.55 2.71
490 491 7.151308 TGCGAATGAACAATTCCTTTACATTT 58.849 30.769 0.00 0.00 41.55 2.32
491 492 7.655328 TGCGAATGAACAATTCCTTTACATTTT 59.345 29.630 0.00 0.00 41.55 1.82
492 493 8.495148 GCGAATGAACAATTCCTTTACATTTTT 58.505 29.630 0.00 0.00 41.55 1.94
499 500 9.810545 AACAATTCCTTTACATTTTTCTTTCGA 57.189 25.926 0.00 0.00 0.00 3.71
500 501 9.810545 ACAATTCCTTTACATTTTTCTTTCGAA 57.189 25.926 0.00 0.00 0.00 3.71
505 506 9.458374 TCCTTTACATTTTTCTTTCGAATGAAC 57.542 29.630 22.01 0.00 35.36 3.18
506 507 9.243637 CCTTTACATTTTTCTTTCGAATGAACA 57.756 29.630 22.01 15.13 35.36 3.18
511 512 8.764287 ACATTTTTCTTTCGAATGAACAATTCC 58.236 29.630 24.36 0.00 41.55 3.01
512 513 8.981647 CATTTTTCTTTCGAATGAACAATTCCT 58.018 29.630 24.36 10.86 41.55 3.36
513 514 7.928908 TTTTCTTTCGAATGAACAATTCCTG 57.071 32.000 22.01 0.00 41.55 3.86
514 515 5.046910 TCTTTCGAATGAACAATTCCTGC 57.953 39.130 11.02 0.00 41.55 4.85
515 516 4.518590 TCTTTCGAATGAACAATTCCTGCA 59.481 37.500 11.02 0.00 41.55 4.41
516 517 4.844998 TTCGAATGAACAATTCCTGCAA 57.155 36.364 0.00 0.00 41.55 4.08
517 518 4.844998 TCGAATGAACAATTCCTGCAAA 57.155 36.364 0.00 0.00 41.55 3.68
518 519 5.193663 TCGAATGAACAATTCCTGCAAAA 57.806 34.783 0.00 0.00 41.55 2.44
519 520 5.595885 TCGAATGAACAATTCCTGCAAAAA 58.404 33.333 0.00 0.00 41.55 1.94
771 776 1.067495 GCTTAGGCGAGGTATAGGCAG 60.067 57.143 0.00 0.00 35.18 4.85
824 830 6.923199 CCCAAGAAAAATATGGGCTCATAT 57.077 37.500 13.60 13.60 46.77 1.78
866 872 2.593956 GCCCTTTCCCAGTCCGACT 61.594 63.158 0.00 0.00 0.00 4.18
926 932 3.853183 TATAACCCGCCGTCCCCAGAT 62.853 57.143 0.00 0.00 0.00 2.90
966 973 1.370064 GTAACCACCGAGCACCAGT 59.630 57.895 0.00 0.00 0.00 4.00
1042 1049 3.338126 ATGTCGTCGTCAGGGTCGC 62.338 63.158 0.00 0.00 0.00 5.19
1139 1147 4.335594 GGTGAATCTCCCCTAATGTTTTCG 59.664 45.833 0.00 0.00 0.00 3.46
1147 1155 6.821665 TCTCCCCTAATGTTTTCGTATCTTTG 59.178 38.462 0.00 0.00 0.00 2.77
1235 1244 1.852942 TCGTCGATAGCTGATTTGCC 58.147 50.000 0.00 0.00 0.00 4.52
1282 1291 2.168936 TCGTTGGGGCGATAATGTTAGT 59.831 45.455 0.00 0.00 35.83 2.24
1394 1412 3.937706 CAGATTCTACTTGAACAGGCAGG 59.062 47.826 0.00 0.00 37.52 4.85
1550 1571 4.082408 TCCCGATTGCTGTAATAGATACGG 60.082 45.833 8.05 8.05 42.79 4.02
1718 1839 1.991121 ACTGGAGCAATATGGCATGG 58.009 50.000 10.98 0.55 35.83 3.66
1731 1852 1.757118 TGGCATGGCTAGACTGTAGAC 59.243 52.381 21.08 0.00 0.00 2.59
1732 1853 2.035632 GGCATGGCTAGACTGTAGACT 58.964 52.381 12.86 0.00 0.00 3.24
1733 1854 3.223435 GGCATGGCTAGACTGTAGACTA 58.777 50.000 12.86 0.00 0.00 2.59
1734 1855 3.254657 GGCATGGCTAGACTGTAGACTAG 59.745 52.174 12.86 12.13 41.24 2.57
1974 2099 4.729552 ACAGGTGCATCAATATGGGTAT 57.270 40.909 0.00 0.00 33.38 2.73
1979 2104 4.314961 GTGCATCAATATGGGTATGACGA 58.685 43.478 0.00 0.00 33.38 4.20
1981 2106 6.106003 GTGCATCAATATGGGTATGACGATA 58.894 40.000 0.00 0.00 33.38 2.92
2017 2142 4.383850 TTCCAATATCACCAATTTGCGG 57.616 40.909 0.00 0.00 0.00 5.69
2018 2143 2.692557 TCCAATATCACCAATTTGCGGG 59.307 45.455 0.00 0.00 0.00 6.13
2040 2165 7.490079 GCGGGTTTTTATTTATTTGTAGAAGGG 59.510 37.037 0.00 0.00 0.00 3.95
2041 2166 8.741841 CGGGTTTTTATTTATTTGTAGAAGGGA 58.258 33.333 0.00 0.00 0.00 4.20
2249 2380 2.569853 TCACCGCAAATCCCTTCTTCTA 59.430 45.455 0.00 0.00 0.00 2.10
2372 2505 4.479619 GACATCATCAAGGTTCTGTTTGC 58.520 43.478 0.00 0.00 0.00 3.68
2471 2604 3.709653 TCTTCTACATTGTCCCCGCTAAT 59.290 43.478 0.00 0.00 0.00 1.73
2509 2642 7.547722 CCCTTTTTAAGTACATTTGCATTACCC 59.452 37.037 0.00 0.00 0.00 3.69
2606 2795 3.262660 TGGATTCAGTTGAGTCATGCTCT 59.737 43.478 15.20 4.71 44.41 4.09
2642 2832 7.806180 AGATATGTGGTAACCTCTAGCAAATT 58.194 34.615 0.00 0.00 0.00 1.82
2655 2845 6.039047 CCTCTAGCAAATTGTGATGTAGCATT 59.961 38.462 0.00 0.00 0.00 3.56
2709 2904 0.808755 GGCACCCGTAATTTCCACTG 59.191 55.000 0.00 0.00 0.00 3.66
2722 2917 2.034879 CCACTGGTGCGCGATTTCT 61.035 57.895 12.10 0.00 0.00 2.52
2742 2937 2.288666 TGACCACAAGTTTCTGACAGC 58.711 47.619 0.00 0.00 0.00 4.40
2749 2944 0.846693 AGTTTCTGACAGCCCAACCT 59.153 50.000 0.00 0.00 0.00 3.50
2751 2946 0.843309 TTTCTGACAGCCCAACCTGA 59.157 50.000 0.00 0.00 36.67 3.86
2752 2947 1.067295 TTCTGACAGCCCAACCTGAT 58.933 50.000 0.00 0.00 36.67 2.90
2772 2967 2.227194 TCGTTTTTCTCCCCTTTGCTC 58.773 47.619 0.00 0.00 0.00 4.26
2822 3017 7.068716 AGTCCATATATTTGGTTTTCCTTCTGC 59.931 37.037 11.44 0.00 41.38 4.26
2930 3129 8.739972 TCTATTTTCAAGGCAAAATCTTACTCC 58.260 33.333 0.00 0.00 37.23 3.85
2931 3130 5.722021 TTTCAAGGCAAAATCTTACTCCC 57.278 39.130 0.00 0.00 0.00 4.30
2932 3131 4.657814 TCAAGGCAAAATCTTACTCCCT 57.342 40.909 0.00 0.00 0.00 4.20
2933 3132 4.589908 TCAAGGCAAAATCTTACTCCCTC 58.410 43.478 0.00 0.00 0.00 4.30
2934 3133 4.289672 TCAAGGCAAAATCTTACTCCCTCT 59.710 41.667 0.00 0.00 0.00 3.69
2935 3134 4.936685 AGGCAAAATCTTACTCCCTCTT 57.063 40.909 0.00 0.00 0.00 2.85
2936 3135 4.593956 AGGCAAAATCTTACTCCCTCTTG 58.406 43.478 0.00 0.00 0.00 3.02
2937 3136 4.289672 AGGCAAAATCTTACTCCCTCTTGA 59.710 41.667 0.00 0.00 0.00 3.02
2938 3137 4.637977 GGCAAAATCTTACTCCCTCTTGAG 59.362 45.833 0.00 0.00 38.37 3.02
2939 3138 5.491982 GCAAAATCTTACTCCCTCTTGAGA 58.508 41.667 0.00 0.00 36.22 3.27
2940 3139 5.352846 GCAAAATCTTACTCCCTCTTGAGAC 59.647 44.000 0.00 0.00 36.22 3.36
2941 3140 6.467677 CAAAATCTTACTCCCTCTTGAGACA 58.532 40.000 0.00 0.00 36.22 3.41
2942 3141 5.669164 AATCTTACTCCCTCTTGAGACAC 57.331 43.478 0.00 0.00 36.22 3.67
2943 3142 4.390129 TCTTACTCCCTCTTGAGACACT 57.610 45.455 0.00 0.00 36.22 3.55
2944 3143 4.742012 TCTTACTCCCTCTTGAGACACTT 58.258 43.478 0.00 0.00 36.22 3.16
2945 3144 5.888901 TCTTACTCCCTCTTGAGACACTTA 58.111 41.667 0.00 0.00 36.22 2.24
2946 3145 6.494952 TCTTACTCCCTCTTGAGACACTTAT 58.505 40.000 0.00 0.00 36.22 1.73
2947 3146 6.954684 TCTTACTCCCTCTTGAGACACTTATT 59.045 38.462 0.00 0.00 36.22 1.40
2948 3147 7.455008 TCTTACTCCCTCTTGAGACACTTATTT 59.545 37.037 0.00 0.00 36.22 1.40
2949 3148 6.441088 ACTCCCTCTTGAGACACTTATTTT 57.559 37.500 0.00 0.00 36.22 1.82
2950 3149 6.234177 ACTCCCTCTTGAGACACTTATTTTG 58.766 40.000 0.00 0.00 36.22 2.44
2951 3150 5.560724 TCCCTCTTGAGACACTTATTTTGG 58.439 41.667 0.00 0.00 0.00 3.28
2952 3151 4.702131 CCCTCTTGAGACACTTATTTTGGG 59.298 45.833 0.00 0.00 0.00 4.12
2953 3152 5.514834 CCCTCTTGAGACACTTATTTTGGGA 60.515 44.000 0.00 0.00 0.00 4.37
2954 3153 5.412904 CCTCTTGAGACACTTATTTTGGGAC 59.587 44.000 0.00 0.00 0.00 4.46
2955 3154 4.994852 TCTTGAGACACTTATTTTGGGACG 59.005 41.667 0.00 0.00 0.00 4.79
2956 3155 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2957 3156 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2958 3157 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2959 3158 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2960 3159 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2961 3160 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2962 3161 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2963 3162 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2964 3163 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2965 3164 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
2966 3165 1.961133 TTTGGGACGGAGGGAGTATT 58.039 50.000 0.00 0.00 0.00 1.89
2967 3166 2.852714 TTGGGACGGAGGGAGTATTA 57.147 50.000 0.00 0.00 0.00 0.98
2968 3167 3.339713 TTGGGACGGAGGGAGTATTAT 57.660 47.619 0.00 0.00 0.00 1.28
2969 3168 4.474303 TTGGGACGGAGGGAGTATTATA 57.526 45.455 0.00 0.00 0.00 0.98
2970 3169 3.771216 TGGGACGGAGGGAGTATTATAC 58.229 50.000 0.00 0.00 0.00 1.47
2971 3170 3.140707 TGGGACGGAGGGAGTATTATACA 59.859 47.826 5.11 0.00 0.00 2.29
2972 3171 4.154942 GGGACGGAGGGAGTATTATACAA 58.845 47.826 5.11 0.00 0.00 2.41
2973 3172 4.776308 GGGACGGAGGGAGTATTATACAAT 59.224 45.833 5.11 0.00 0.00 2.71
2974 3173 5.105432 GGGACGGAGGGAGTATTATACAATC 60.105 48.000 5.11 0.00 0.00 2.67
2975 3174 5.715753 GGACGGAGGGAGTATTATACAATCT 59.284 44.000 5.11 0.00 0.00 2.40
3041 3244 7.347222 ACATAATCTTCCCACTTGGATAGTACA 59.653 37.037 0.00 0.00 44.66 2.90
3224 3427 2.623416 GGCACTGCCTTAGTTCAACTTT 59.377 45.455 13.28 0.00 46.69 2.66
3226 3429 4.083271 GGCACTGCCTTAGTTCAACTTTAG 60.083 45.833 13.28 0.00 46.69 1.85
3237 3440 6.937436 AGTTCAACTTTAGTACAAAGTGGG 57.063 37.500 18.10 14.71 40.10 4.61
3249 3452 6.463360 AGTACAAAGTGGGCAATTAATTTGG 58.537 36.000 0.00 0.00 35.75 3.28
3252 3455 6.172630 ACAAAGTGGGCAATTAATTTGGATC 58.827 36.000 0.00 0.00 35.75 3.36
3271 3474 3.726557 TCGGAGGGAGTACAGACTTTA 57.273 47.619 0.00 0.00 35.45 1.85
3451 3692 6.707440 TTTCTCACATGAAAAGCTTTGGTA 57.293 33.333 13.54 2.54 33.59 3.25
3455 3696 3.974401 CACATGAAAAGCTTTGGTACGTG 59.026 43.478 13.54 16.56 0.00 4.49
3456 3697 2.766970 TGAAAAGCTTTGGTACGTGC 57.233 45.000 13.54 0.00 0.00 5.34
3496 3739 1.419762 TGTGAGAAAGGGCAAGCTACA 59.580 47.619 0.00 0.00 0.00 2.74
3531 3775 3.281341 TCAGCATTAAAAGTTGTGGCG 57.719 42.857 0.00 0.00 0.00 5.69
3590 3835 2.605338 CGAGTGCACAGTTGGAATTTGG 60.605 50.000 21.04 0.00 0.00 3.28
3591 3836 1.069049 AGTGCACAGTTGGAATTTGGC 59.931 47.619 21.04 0.00 0.00 4.52
3592 3837 0.031857 TGCACAGTTGGAATTTGGCG 59.968 50.000 0.00 0.00 0.00 5.69
3593 3838 0.031994 GCACAGTTGGAATTTGGCGT 59.968 50.000 0.00 0.00 0.00 5.68
3594 3839 1.769733 CACAGTTGGAATTTGGCGTG 58.230 50.000 0.00 0.00 0.00 5.34
3595 3840 0.673437 ACAGTTGGAATTTGGCGTGG 59.327 50.000 0.00 0.00 0.00 4.94
3596 3841 0.667184 CAGTTGGAATTTGGCGTGGC 60.667 55.000 0.00 0.00 0.00 5.01
3599 3844 2.125952 GGAATTTGGCGTGGCTGC 60.126 61.111 0.00 0.00 0.00 5.25
3600 3845 2.639327 GGAATTTGGCGTGGCTGCT 61.639 57.895 0.00 0.00 34.52 4.24
3601 3846 1.312371 GGAATTTGGCGTGGCTGCTA 61.312 55.000 0.00 0.00 34.52 3.49
3602 3847 0.525761 GAATTTGGCGTGGCTGCTAA 59.474 50.000 0.00 0.07 33.19 3.09
3603 3848 0.965439 AATTTGGCGTGGCTGCTAAA 59.035 45.000 13.90 13.90 46.97 1.85
3604 3849 0.527565 ATTTGGCGTGGCTGCTAAAG 59.472 50.000 15.90 0.00 46.29 1.85
3607 3852 0.035598 TGGCGTGGCTGCTAAAGTAA 59.964 50.000 0.00 0.00 34.52 2.24
3608 3853 1.339631 TGGCGTGGCTGCTAAAGTAAT 60.340 47.619 0.00 0.00 34.52 1.89
3609 3854 1.743394 GGCGTGGCTGCTAAAGTAATT 59.257 47.619 0.00 0.00 34.52 1.40
3617 3877 8.062448 CGTGGCTGCTAAAGTAATTATCTAAAC 58.938 37.037 0.00 0.00 0.00 2.01
3640 3900 7.614684 AACGCTCTTATAGTACGTTACGGAGT 61.615 42.308 10.20 6.06 44.32 3.85
3648 3908 2.977405 ACGTTACGGAGTGAGTACAC 57.023 50.000 10.20 0.00 45.73 2.90
3690 3950 9.331282 CAAGCTAAAGATATTAGTAAGCTGGTT 57.669 33.333 0.00 0.00 38.74 3.67
3691 3951 9.907229 AAGCTAAAGATATTAGTAAGCTGGTTT 57.093 29.630 0.00 0.00 38.74 3.27
3698 3958 9.067986 AGATATTAGTAAGCTGGTTTAATTGGC 57.932 33.333 0.00 0.00 0.00 4.52
3699 3959 8.996651 ATATTAGTAAGCTGGTTTAATTGGCT 57.003 30.769 0.00 0.00 34.52 4.75
3700 3960 6.509418 TTAGTAAGCTGGTTTAATTGGCTG 57.491 37.500 0.00 0.00 33.30 4.85
3701 3961 3.763897 AGTAAGCTGGTTTAATTGGCTGG 59.236 43.478 0.00 0.00 33.30 4.85
3702 3962 2.603075 AGCTGGTTTAATTGGCTGGA 57.397 45.000 0.00 0.00 31.68 3.86
3703 3963 2.171003 AGCTGGTTTAATTGGCTGGAC 58.829 47.619 0.00 0.00 31.68 4.02
3704 3964 2.171003 GCTGGTTTAATTGGCTGGACT 58.829 47.619 0.00 0.00 0.00 3.85
3705 3965 3.010138 AGCTGGTTTAATTGGCTGGACTA 59.990 43.478 0.00 0.00 31.68 2.59
3706 3966 3.378427 GCTGGTTTAATTGGCTGGACTAG 59.622 47.826 0.00 0.00 0.00 2.57
3707 3967 3.947834 CTGGTTTAATTGGCTGGACTAGG 59.052 47.826 0.00 0.00 0.00 3.02
3708 3968 3.332485 TGGTTTAATTGGCTGGACTAGGT 59.668 43.478 0.00 0.00 0.00 3.08
3709 3969 3.694566 GGTTTAATTGGCTGGACTAGGTG 59.305 47.826 0.00 0.00 0.00 4.00
3710 3970 2.710096 TAATTGGCTGGACTAGGTGC 57.290 50.000 0.00 0.00 0.00 5.01
3711 3971 0.698238 AATTGGCTGGACTAGGTGCA 59.302 50.000 0.00 0.00 32.07 4.57
3727 3987 8.863872 ACTAGGTGCATTAATTCACTTAAGTT 57.136 30.769 16.18 0.00 32.93 2.66
3728 3988 9.297037 ACTAGGTGCATTAATTCACTTAAGTTT 57.703 29.630 16.18 0.57 32.93 2.66
3808 4075 8.231692 TCAAACTGTCATTGTGGATTTTTCTA 57.768 30.769 0.00 0.00 0.00 2.10
3811 4078 5.183904 ACTGTCATTGTGGATTTTTCTAGCC 59.816 40.000 0.00 0.00 0.00 3.93
3812 4079 5.324409 TGTCATTGTGGATTTTTCTAGCCT 58.676 37.500 0.00 0.00 0.00 4.58
3813 4080 5.774690 TGTCATTGTGGATTTTTCTAGCCTT 59.225 36.000 0.00 0.00 0.00 4.35
3814 4081 6.095377 GTCATTGTGGATTTTTCTAGCCTTG 58.905 40.000 0.00 0.00 0.00 3.61
3815 4082 5.774690 TCATTGTGGATTTTTCTAGCCTTGT 59.225 36.000 0.00 0.00 0.00 3.16
3817 4084 5.452078 TGTGGATTTTTCTAGCCTTGTTG 57.548 39.130 0.00 0.00 0.00 3.33
3819 4086 4.021981 GTGGATTTTTCTAGCCTTGTTGCT 60.022 41.667 0.00 0.00 45.38 3.91
3820 4087 4.022068 TGGATTTTTCTAGCCTTGTTGCTG 60.022 41.667 0.00 0.00 42.77 4.41
3821 4088 4.021981 GGATTTTTCTAGCCTTGTTGCTGT 60.022 41.667 0.00 0.00 42.77 4.40
3822 4089 5.509670 GGATTTTTCTAGCCTTGTTGCTGTT 60.510 40.000 0.00 0.00 42.77 3.16
3871 4138 6.558009 CATCATCTGTTTCGTTCATTTGGAT 58.442 36.000 0.00 0.00 0.00 3.41
3890 4157 6.211587 TGGATTGATTGGTTGTCATTGATC 57.788 37.500 0.00 0.00 0.00 2.92
3903 4177 6.490566 TGTCATTGATCTCACATGAGTTTG 57.509 37.500 8.70 0.00 42.60 2.93
3923 4197 4.370364 TGGAAACTCACTTGTTTGCTTC 57.630 40.909 11.55 0.00 44.72 3.86
3924 4198 4.016444 TGGAAACTCACTTGTTTGCTTCT 58.984 39.130 11.55 0.00 44.72 2.85
3925 4199 4.096382 TGGAAACTCACTTGTTTGCTTCTC 59.904 41.667 11.55 0.00 44.72 2.87
3926 4200 4.336713 GGAAACTCACTTGTTTGCTTCTCT 59.663 41.667 0.00 0.00 42.38 3.10
3927 4201 5.491635 AAACTCACTTGTTTGCTTCTCTC 57.508 39.130 0.00 0.00 38.54 3.20
3929 4203 4.775236 ACTCACTTGTTTGCTTCTCTCTT 58.225 39.130 0.00 0.00 0.00 2.85
3938 4245 2.498167 TGCTTCTCTCTTGTTGCCTTC 58.502 47.619 0.00 0.00 0.00 3.46
3965 4272 8.250332 ACAAACGGATATGCACATCTTTTTAAT 58.750 29.630 4.72 0.00 0.00 1.40
3966 4273 9.729023 CAAACGGATATGCACATCTTTTTAATA 57.271 29.630 4.72 0.00 0.00 0.98
3967 4274 9.730420 AAACGGATATGCACATCTTTTTAATAC 57.270 29.630 4.72 0.00 0.00 1.89
3968 4275 8.445275 ACGGATATGCACATCTTTTTAATACA 57.555 30.769 4.72 0.00 0.00 2.29
3969 4276 8.342634 ACGGATATGCACATCTTTTTAATACAC 58.657 33.333 4.72 0.00 0.00 2.90
3970 4277 8.341903 CGGATATGCACATCTTTTTAATACACA 58.658 33.333 4.72 0.00 0.00 3.72
3986 4293 9.562408 TTTAATACACATTTACTTGTCTGGACA 57.438 29.630 0.00 0.00 39.98 4.02
3987 4294 7.435068 AATACACATTTACTTGTCTGGACAC 57.565 36.000 2.65 0.00 41.67 3.67
3988 4295 4.776349 ACACATTTACTTGTCTGGACACA 58.224 39.130 2.65 0.00 41.67 3.72
3989 4296 5.376625 ACACATTTACTTGTCTGGACACAT 58.623 37.500 2.65 0.00 41.67 3.21
3990 4297 5.827797 ACACATTTACTTGTCTGGACACATT 59.172 36.000 2.65 0.00 41.67 2.71
3991 4298 6.017109 ACACATTTACTTGTCTGGACACATTC 60.017 38.462 2.65 0.00 41.67 2.67
3992 4299 6.017192 CACATTTACTTGTCTGGACACATTCA 60.017 38.462 2.65 0.00 41.67 2.57
3993 4300 6.017109 ACATTTACTTGTCTGGACACATTCAC 60.017 38.462 2.65 0.00 41.67 3.18
3994 4301 3.845781 ACTTGTCTGGACACATTCACT 57.154 42.857 2.65 0.00 41.67 3.41
3995 4302 4.156455 ACTTGTCTGGACACATTCACTT 57.844 40.909 2.65 0.00 41.67 3.16
3996 4303 3.879295 ACTTGTCTGGACACATTCACTTG 59.121 43.478 2.65 0.00 41.67 3.16
3997 4304 2.221169 TGTCTGGACACATTCACTTGC 58.779 47.619 0.00 0.00 36.21 4.01
3998 4305 2.158769 TGTCTGGACACATTCACTTGCT 60.159 45.455 0.00 0.00 36.21 3.91
3999 4306 2.880890 GTCTGGACACATTCACTTGCTT 59.119 45.455 0.00 0.00 0.00 3.91
4000 4307 3.316308 GTCTGGACACATTCACTTGCTTT 59.684 43.478 0.00 0.00 0.00 3.51
4001 4308 3.316029 TCTGGACACATTCACTTGCTTTG 59.684 43.478 0.00 0.00 0.00 2.77
4002 4309 3.023119 TGGACACATTCACTTGCTTTGT 58.977 40.909 0.00 0.00 0.00 2.83
4003 4310 3.446873 TGGACACATTCACTTGCTTTGTT 59.553 39.130 0.00 0.00 0.00 2.83
4004 4311 4.642437 TGGACACATTCACTTGCTTTGTTA 59.358 37.500 0.00 0.00 0.00 2.41
4005 4312 5.126222 TGGACACATTCACTTGCTTTGTTAA 59.874 36.000 0.00 0.00 0.00 2.01
4006 4313 6.039616 GGACACATTCACTTGCTTTGTTAAA 58.960 36.000 0.00 0.00 0.00 1.52
4007 4314 6.701400 GGACACATTCACTTGCTTTGTTAAAT 59.299 34.615 0.00 0.00 0.00 1.40
4008 4315 7.306749 GGACACATTCACTTGCTTTGTTAAATG 60.307 37.037 0.00 0.00 0.00 2.32
4009 4316 6.018832 ACACATTCACTTGCTTTGTTAAATGC 60.019 34.615 0.00 0.00 37.06 3.56
4010 4317 6.018913 CACATTCACTTGCTTTGTTAAATGCA 60.019 34.615 0.00 0.00 42.75 3.96
4053 4440 4.807304 TCCTTTATAATTTCGCAGACCGTC 59.193 41.667 0.00 0.00 34.32 4.79
4185 4572 1.234615 TAGGCCGTGCTTTGTTCAGC 61.235 55.000 0.00 0.00 40.55 4.26
4240 4643 1.996191 GGCGAGCTTTTGTCTAGAGTG 59.004 52.381 0.00 0.00 0.00 3.51
4286 4689 2.654749 TGCTACTCAAGTCGTCATGG 57.345 50.000 0.00 0.00 0.00 3.66
4297 4701 0.250553 TCGTCATGGGGTGTTGGTTC 60.251 55.000 0.00 0.00 0.00 3.62
4298 4702 1.241315 CGTCATGGGGTGTTGGTTCC 61.241 60.000 0.00 0.00 0.00 3.62
4389 4794 5.518847 GTGAAGGTCTTTTGGTTAAACTTGC 59.481 40.000 0.00 0.00 0.00 4.01
4449 4858 2.476619 CGTGCAGTTCTTCTCGATGTTT 59.523 45.455 0.00 0.00 0.00 2.83
4467 4876 5.344743 TGTTTTGTTTTGCCCAGATGTTA 57.655 34.783 0.00 0.00 0.00 2.41
4468 4877 5.112686 TGTTTTGTTTTGCCCAGATGTTAC 58.887 37.500 0.00 0.00 0.00 2.50
4469 4878 5.112686 GTTTTGTTTTGCCCAGATGTTACA 58.887 37.500 0.00 0.00 0.00 2.41
4470 4879 5.543507 TTTGTTTTGCCCAGATGTTACAT 57.456 34.783 0.00 0.00 0.00 2.29
4471 4880 4.517952 TGTTTTGCCCAGATGTTACATG 57.482 40.909 1.24 0.00 0.00 3.21
4472 4881 3.253230 GTTTTGCCCAGATGTTACATGC 58.747 45.455 1.24 0.11 0.00 4.06
4473 4882 2.212812 TTGCCCAGATGTTACATGCA 57.787 45.000 1.24 3.11 0.00 3.96
4500 4921 1.064654 GGTGAATCGGCAAGCATTCTC 59.935 52.381 6.65 3.78 31.33 2.87
4550 4971 7.768807 TTAAAGGATTACTAGCAAAAAGGCA 57.231 32.000 0.00 0.00 35.83 4.75
4555 4976 1.961793 ACTAGCAAAAAGGCACGTGA 58.038 45.000 22.23 0.00 35.83 4.35
4572 4993 2.350772 CGTGAGTTGCAATGGGAGAAAC 60.351 50.000 0.59 0.00 0.00 2.78
4687 5112 7.280205 CCGCAGTTTAAGATTCTATAGGTGTTT 59.720 37.037 0.00 0.00 0.00 2.83
4724 5149 6.149474 GGCTTGCATGTAGATTTAATCCGTAT 59.851 38.462 0.78 0.00 0.00 3.06
4756 5181 6.046593 CAGGCAAGTGATCATGCATTTATTT 58.953 36.000 20.02 0.00 44.32 1.40
4773 5198 9.891828 GCATTTATTTATGTCATGTTCGGAATA 57.108 29.630 0.00 0.00 0.00 1.75
4777 5202 3.492102 ATGTCATGTTCGGAATAGGGG 57.508 47.619 0.00 0.00 0.00 4.79
4778 5203 2.193127 TGTCATGTTCGGAATAGGGGT 58.807 47.619 0.00 0.00 0.00 4.95
4779 5204 2.093181 TGTCATGTTCGGAATAGGGGTG 60.093 50.000 0.00 0.00 0.00 4.61
4780 5205 2.093128 GTCATGTTCGGAATAGGGGTGT 60.093 50.000 0.00 0.00 0.00 4.16
4781 5206 2.169769 TCATGTTCGGAATAGGGGTGTC 59.830 50.000 0.00 0.00 0.00 3.67
4782 5207 0.906775 TGTTCGGAATAGGGGTGTCC 59.093 55.000 0.00 0.00 0.00 4.02
4789 5214 4.532314 GGAATAGGGGTGTCCGTAATAG 57.468 50.000 0.00 0.00 41.52 1.73
4790 5215 3.260128 GGAATAGGGGTGTCCGTAATAGG 59.740 52.174 0.00 0.00 41.52 2.57
4791 5216 2.386829 TAGGGGTGTCCGTAATAGGG 57.613 55.000 0.00 0.00 41.52 3.53
4792 5217 0.399519 AGGGGTGTCCGTAATAGGGG 60.400 60.000 0.00 0.00 41.52 4.79
4805 5230 0.915387 ATAGGGGGTTGTTACGGGCA 60.915 55.000 0.00 0.00 0.00 5.36
4840 5265 8.467402 AAATGACAAAAACAAACGATAACACA 57.533 26.923 0.00 0.00 0.00 3.72
4841 5266 8.641499 AATGACAAAAACAAACGATAACACAT 57.359 26.923 0.00 0.00 0.00 3.21
4842 5267 8.641499 ATGACAAAAACAAACGATAACACATT 57.359 26.923 0.00 0.00 0.00 2.71
4843 5268 9.737427 ATGACAAAAACAAACGATAACACATTA 57.263 25.926 0.00 0.00 0.00 1.90
4844 5269 9.227490 TGACAAAAACAAACGATAACACATTAG 57.773 29.630 0.00 0.00 0.00 1.73
4845 5270 8.056710 ACAAAAACAAACGATAACACATTAGC 57.943 30.769 0.00 0.00 0.00 3.09
4846 5271 7.702772 ACAAAAACAAACGATAACACATTAGCA 59.297 29.630 0.00 0.00 0.00 3.49
4847 5272 7.617533 AAAACAAACGATAACACATTAGCAC 57.382 32.000 0.00 0.00 0.00 4.40
4848 5273 5.933187 ACAAACGATAACACATTAGCACA 57.067 34.783 0.00 0.00 0.00 4.57
4849 5274 5.685841 ACAAACGATAACACATTAGCACAC 58.314 37.500 0.00 0.00 0.00 3.82
4850 5275 5.468746 ACAAACGATAACACATTAGCACACT 59.531 36.000 0.00 0.00 0.00 3.55
4851 5276 6.647481 ACAAACGATAACACATTAGCACACTA 59.353 34.615 0.00 0.00 0.00 2.74
4852 5277 6.642683 AACGATAACACATTAGCACACTAC 57.357 37.500 0.00 0.00 0.00 2.73
4853 5278 4.796830 ACGATAACACATTAGCACACTACG 59.203 41.667 0.00 0.00 0.00 3.51
4854 5279 4.206404 CGATAACACATTAGCACACTACGG 59.794 45.833 0.00 0.00 0.00 4.02
4855 5280 3.671008 AACACATTAGCACACTACGGA 57.329 42.857 0.00 0.00 0.00 4.69
4856 5281 3.232213 ACACATTAGCACACTACGGAG 57.768 47.619 0.00 0.00 0.00 4.63
4857 5282 2.823747 ACACATTAGCACACTACGGAGA 59.176 45.455 0.00 0.00 0.00 3.71
4858 5283 3.179830 CACATTAGCACACTACGGAGAC 58.820 50.000 0.00 0.00 0.00 3.36
4873 5298 1.594862 GGAGACGTGTGCATCAATAGC 59.405 52.381 0.00 0.00 0.00 2.97
4874 5299 2.270923 GAGACGTGTGCATCAATAGCA 58.729 47.619 0.00 0.00 40.19 3.49
4875 5300 2.274437 AGACGTGTGCATCAATAGCAG 58.726 47.619 0.00 0.00 43.63 4.24
4876 5301 2.002586 GACGTGTGCATCAATAGCAGT 58.997 47.619 0.00 0.00 43.63 4.40
4877 5302 2.416547 GACGTGTGCATCAATAGCAGTT 59.583 45.455 0.00 0.00 43.63 3.16
4878 5303 2.813754 ACGTGTGCATCAATAGCAGTTT 59.186 40.909 0.00 0.00 43.63 2.66
4879 5304 3.253188 ACGTGTGCATCAATAGCAGTTTT 59.747 39.130 0.00 0.00 43.63 2.43
4880 5305 3.605056 CGTGTGCATCAATAGCAGTTTTG 59.395 43.478 0.00 0.00 43.63 2.44
4881 5306 4.613394 CGTGTGCATCAATAGCAGTTTTGA 60.613 41.667 0.00 0.00 43.63 2.69
4882 5307 4.855388 GTGTGCATCAATAGCAGTTTTGAG 59.145 41.667 0.00 0.00 43.63 3.02
4883 5308 4.520111 TGTGCATCAATAGCAGTTTTGAGT 59.480 37.500 0.00 0.00 43.63 3.41
4884 5309 5.009911 TGTGCATCAATAGCAGTTTTGAGTT 59.990 36.000 0.00 0.00 43.63 3.01
4885 5310 5.922544 GTGCATCAATAGCAGTTTTGAGTTT 59.077 36.000 0.00 0.00 43.63 2.66
4886 5311 7.083858 GTGCATCAATAGCAGTTTTGAGTTTA 58.916 34.615 0.00 0.00 43.63 2.01
4887 5312 7.594758 GTGCATCAATAGCAGTTTTGAGTTTAA 59.405 33.333 0.00 0.00 43.63 1.52
4888 5313 7.809331 TGCATCAATAGCAGTTTTGAGTTTAAG 59.191 33.333 0.00 0.00 37.02 1.85
4889 5314 8.023128 GCATCAATAGCAGTTTTGAGTTTAAGA 58.977 33.333 0.00 0.00 35.47 2.10
4890 5315 9.897744 CATCAATAGCAGTTTTGAGTTTAAGAA 57.102 29.630 0.00 0.00 35.47 2.52
4893 5318 9.897744 CAATAGCAGTTTTGAGTTTAAGAATCA 57.102 29.630 0.00 0.00 0.00 2.57
4894 5319 9.899226 AATAGCAGTTTTGAGTTTAAGAATCAC 57.101 29.630 0.00 0.00 0.00 3.06
4895 5320 6.739112 AGCAGTTTTGAGTTTAAGAATCACC 58.261 36.000 0.00 0.00 0.00 4.02
4896 5321 6.321181 AGCAGTTTTGAGTTTAAGAATCACCA 59.679 34.615 0.00 0.00 0.00 4.17
4930 5355 3.197265 CGGAGACATGTGTGCATCAATA 58.803 45.455 14.78 0.00 31.99 1.90
4939 5364 4.548494 TGTGTGCATCAATAGCAGTTTTG 58.452 39.130 0.00 0.00 43.63 2.44
4963 5388 7.741785 TGAGTTTAAGAATCACCAACTTAGGA 58.258 34.615 0.00 0.00 0.00 2.94
4981 5406 8.834749 ACTTAGGATAACTCTTGAACACTTTC 57.165 34.615 0.00 0.00 0.00 2.62
5170 5600 7.927788 TGCCATATATGTCATAGGTATTGGTT 58.072 34.615 11.73 0.00 0.00 3.67
5172 5602 8.046708 GCCATATATGTCATAGGTATTGGTTCA 58.953 37.037 11.73 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.929487 AGACTAGAGAAGAAGGAAAGAAAAGAA 58.071 33.333 0.00 0.00 0.00 2.52
1 2 8.485578 AGACTAGAGAAGAAGGAAAGAAAAGA 57.514 34.615 0.00 0.00 0.00 2.52
2 3 7.540745 CGAGACTAGAGAAGAAGGAAAGAAAAG 59.459 40.741 0.00 0.00 0.00 2.27
3 4 7.014422 ACGAGACTAGAGAAGAAGGAAAGAAAA 59.986 37.037 0.00 0.00 0.00 2.29
4 5 6.490721 ACGAGACTAGAGAAGAAGGAAAGAAA 59.509 38.462 0.00 0.00 0.00 2.52
5 6 6.005198 ACGAGACTAGAGAAGAAGGAAAGAA 58.995 40.000 0.00 0.00 0.00 2.52
6 7 5.562635 ACGAGACTAGAGAAGAAGGAAAGA 58.437 41.667 0.00 0.00 0.00 2.52
7 8 5.890424 ACGAGACTAGAGAAGAAGGAAAG 57.110 43.478 0.00 0.00 0.00 2.62
8 9 6.941436 ACTAACGAGACTAGAGAAGAAGGAAA 59.059 38.462 0.00 0.00 0.00 3.13
9 10 6.474630 ACTAACGAGACTAGAGAAGAAGGAA 58.525 40.000 0.00 0.00 0.00 3.36
10 11 6.052405 ACTAACGAGACTAGAGAAGAAGGA 57.948 41.667 0.00 0.00 0.00 3.36
11 12 6.746745 AACTAACGAGACTAGAGAAGAAGG 57.253 41.667 0.00 0.00 0.00 3.46
12 13 8.508875 AGAAAACTAACGAGACTAGAGAAGAAG 58.491 37.037 0.00 0.00 0.00 2.85
13 14 8.393671 AGAAAACTAACGAGACTAGAGAAGAA 57.606 34.615 0.00 0.00 0.00 2.52
14 15 7.982761 AGAAAACTAACGAGACTAGAGAAGA 57.017 36.000 0.00 0.00 0.00 2.87
15 16 9.465985 AAAAGAAAACTAACGAGACTAGAGAAG 57.534 33.333 0.00 0.00 0.00 2.85
16 17 9.245962 CAAAAGAAAACTAACGAGACTAGAGAA 57.754 33.333 0.00 0.00 0.00 2.87
17 18 8.411683 ACAAAAGAAAACTAACGAGACTAGAGA 58.588 33.333 0.00 0.00 0.00 3.10
18 19 8.576936 ACAAAAGAAAACTAACGAGACTAGAG 57.423 34.615 0.00 0.00 0.00 2.43
19 20 8.937634 AACAAAAGAAAACTAACGAGACTAGA 57.062 30.769 0.00 0.00 0.00 2.43
20 21 9.422196 CAAACAAAAGAAAACTAACGAGACTAG 57.578 33.333 0.00 0.00 0.00 2.57
21 22 8.938906 ACAAACAAAAGAAAACTAACGAGACTA 58.061 29.630 0.00 0.00 0.00 2.59
22 23 7.813645 ACAAACAAAAGAAAACTAACGAGACT 58.186 30.769 0.00 0.00 0.00 3.24
23 24 8.443898 AACAAACAAAAGAAAACTAACGAGAC 57.556 30.769 0.00 0.00 0.00 3.36
24 25 8.508875 AGAACAAACAAAAGAAAACTAACGAGA 58.491 29.630 0.00 0.00 0.00 4.04
25 26 8.669394 AGAACAAACAAAAGAAAACTAACGAG 57.331 30.769 0.00 0.00 0.00 4.18
26 27 8.907685 CAAGAACAAACAAAAGAAAACTAACGA 58.092 29.630 0.00 0.00 0.00 3.85
27 28 8.159709 CCAAGAACAAACAAAAGAAAACTAACG 58.840 33.333 0.00 0.00 0.00 3.18
28 29 8.984764 ACCAAGAACAAACAAAAGAAAACTAAC 58.015 29.630 0.00 0.00 0.00 2.34
29 30 9.549078 AACCAAGAACAAACAAAAGAAAACTAA 57.451 25.926 0.00 0.00 0.00 2.24
30 31 9.549078 AAACCAAGAACAAACAAAAGAAAACTA 57.451 25.926 0.00 0.00 0.00 2.24
31 32 8.445275 AAACCAAGAACAAACAAAAGAAAACT 57.555 26.923 0.00 0.00 0.00 2.66
32 33 9.165014 GAAAACCAAGAACAAACAAAAGAAAAC 57.835 29.630 0.00 0.00 0.00 2.43
33 34 8.893727 TGAAAACCAAGAACAAACAAAAGAAAA 58.106 25.926 0.00 0.00 0.00 2.29
34 35 8.338986 GTGAAAACCAAGAACAAACAAAAGAAA 58.661 29.630 0.00 0.00 0.00 2.52
35 36 7.041712 GGTGAAAACCAAGAACAAACAAAAGAA 60.042 33.333 0.00 0.00 0.00 2.52
36 37 6.425417 GGTGAAAACCAAGAACAAACAAAAGA 59.575 34.615 0.00 0.00 0.00 2.52
37 38 6.598525 GGTGAAAACCAAGAACAAACAAAAG 58.401 36.000 0.00 0.00 0.00 2.27
38 39 5.177696 CGGTGAAAACCAAGAACAAACAAAA 59.822 36.000 0.00 0.00 0.00 2.44
39 40 4.686554 CGGTGAAAACCAAGAACAAACAAA 59.313 37.500 0.00 0.00 0.00 2.83
40 41 4.022242 TCGGTGAAAACCAAGAACAAACAA 60.022 37.500 0.00 0.00 0.00 2.83
41 42 3.506455 TCGGTGAAAACCAAGAACAAACA 59.494 39.130 0.00 0.00 0.00 2.83
42 43 4.099380 TCGGTGAAAACCAAGAACAAAC 57.901 40.909 0.00 0.00 0.00 2.93
43 44 4.993029 ATCGGTGAAAACCAAGAACAAA 57.007 36.364 0.00 0.00 0.00 2.83
44 45 4.993029 AATCGGTGAAAACCAAGAACAA 57.007 36.364 0.00 0.00 0.00 2.83
45 46 4.993029 AAATCGGTGAAAACCAAGAACA 57.007 36.364 0.00 0.00 0.00 3.18
46 47 6.040247 AGAAAAATCGGTGAAAACCAAGAAC 58.960 36.000 0.00 0.00 0.00 3.01
47 48 6.215495 AGAAAAATCGGTGAAAACCAAGAA 57.785 33.333 0.00 0.00 0.00 2.52
48 49 5.845391 AGAAAAATCGGTGAAAACCAAGA 57.155 34.783 0.00 0.00 0.00 3.02
49 50 6.902224 AAAGAAAAATCGGTGAAAACCAAG 57.098 33.333 0.00 0.00 0.00 3.61
50 51 7.548967 AGTAAAGAAAAATCGGTGAAAACCAA 58.451 30.769 0.00 0.00 0.00 3.67
51 52 7.102847 AGTAAAGAAAAATCGGTGAAAACCA 57.897 32.000 0.00 0.00 0.00 3.67
52 53 7.997107 AAGTAAAGAAAAATCGGTGAAAACC 57.003 32.000 0.00 0.00 0.00 3.27
53 54 9.683651 CAAAAGTAAAGAAAAATCGGTGAAAAC 57.316 29.630 0.00 0.00 0.00 2.43
54 55 9.425577 ACAAAAGTAAAGAAAAATCGGTGAAAA 57.574 25.926 0.00 0.00 0.00 2.29
55 56 8.989653 ACAAAAGTAAAGAAAAATCGGTGAAA 57.010 26.923 0.00 0.00 0.00 2.69
56 57 8.989653 AACAAAAGTAAAGAAAAATCGGTGAA 57.010 26.923 0.00 0.00 0.00 3.18
57 58 8.989653 AAACAAAAGTAAAGAAAAATCGGTGA 57.010 26.923 0.00 0.00 0.00 4.02
77 78 9.487790 ACTGAAGAATGAAACAAAGAAAAACAA 57.512 25.926 0.00 0.00 0.00 2.83
78 79 9.487790 AACTGAAGAATGAAACAAAGAAAAACA 57.512 25.926 0.00 0.00 0.00 2.83
124 125 8.736244 CCGGTGAAAGGAAATAGAAATTAAGAA 58.264 33.333 0.00 0.00 0.00 2.52
125 126 7.886446 ACCGGTGAAAGGAAATAGAAATTAAGA 59.114 33.333 6.12 0.00 0.00 2.10
126 127 8.051901 ACCGGTGAAAGGAAATAGAAATTAAG 57.948 34.615 6.12 0.00 0.00 1.85
127 128 8.301002 CAACCGGTGAAAGGAAATAGAAATTAA 58.699 33.333 8.52 0.00 0.00 1.40
128 129 7.449086 ACAACCGGTGAAAGGAAATAGAAATTA 59.551 33.333 8.52 0.00 0.00 1.40
129 130 6.266786 ACAACCGGTGAAAGGAAATAGAAATT 59.733 34.615 8.52 0.00 0.00 1.82
130 131 5.773176 ACAACCGGTGAAAGGAAATAGAAAT 59.227 36.000 8.52 0.00 0.00 2.17
131 132 5.134661 ACAACCGGTGAAAGGAAATAGAAA 58.865 37.500 8.52 0.00 0.00 2.52
132 133 4.721132 ACAACCGGTGAAAGGAAATAGAA 58.279 39.130 8.52 0.00 0.00 2.10
133 134 4.360951 ACAACCGGTGAAAGGAAATAGA 57.639 40.909 8.52 0.00 0.00 1.98
146 147 1.842052 AGAAACCAAACACAACCGGT 58.158 45.000 0.00 0.00 0.00 5.28
147 148 2.951457 AAGAAACCAAACACAACCGG 57.049 45.000 0.00 0.00 0.00 5.28
148 149 4.104696 AGAAAGAAACCAAACACAACCG 57.895 40.909 0.00 0.00 0.00 4.44
149 150 6.163476 AGAAAGAAAGAAACCAAACACAACC 58.837 36.000 0.00 0.00 0.00 3.77
150 151 7.652300 AAGAAAGAAAGAAACCAAACACAAC 57.348 32.000 0.00 0.00 0.00 3.32
151 152 8.669946 AAAAGAAAGAAAGAAACCAAACACAA 57.330 26.923 0.00 0.00 0.00 3.33
152 153 8.669946 AAAAAGAAAGAAAGAAACCAAACACA 57.330 26.923 0.00 0.00 0.00 3.72
249 250 9.883142 ACAGAAAAATGTTCATGGAAGTTAAAA 57.117 25.926 0.00 0.00 0.00 1.52
253 254 8.859090 TCATACAGAAAAATGTTCATGGAAGTT 58.141 29.630 0.00 0.00 34.56 2.66
254 255 8.408043 TCATACAGAAAAATGTTCATGGAAGT 57.592 30.769 0.00 0.00 34.56 3.01
355 356 9.035607 CGTGTCTCAAGAAATGTAAGCTATATT 57.964 33.333 0.00 0.00 0.00 1.28
356 357 8.198109 ACGTGTCTCAAGAAATGTAAGCTATAT 58.802 33.333 0.00 0.00 30.05 0.86
357 358 7.488150 CACGTGTCTCAAGAAATGTAAGCTATA 59.512 37.037 7.58 0.00 30.66 1.31
358 359 6.311445 CACGTGTCTCAAGAAATGTAAGCTAT 59.689 38.462 7.58 0.00 30.66 2.97
359 360 5.633601 CACGTGTCTCAAGAAATGTAAGCTA 59.366 40.000 7.58 0.00 30.66 3.32
360 361 4.449068 CACGTGTCTCAAGAAATGTAAGCT 59.551 41.667 7.58 0.00 30.66 3.74
361 362 4.447724 TCACGTGTCTCAAGAAATGTAAGC 59.552 41.667 16.51 0.00 30.66 3.09
362 363 6.525121 TTCACGTGTCTCAAGAAATGTAAG 57.475 37.500 16.51 0.00 30.66 2.34
363 364 6.912203 TTTCACGTGTCTCAAGAAATGTAA 57.088 33.333 16.51 0.00 30.66 2.41
364 365 7.490962 AATTTCACGTGTCTCAAGAAATGTA 57.509 32.000 16.51 0.00 38.50 2.29
365 366 6.377327 AATTTCACGTGTCTCAAGAAATGT 57.623 33.333 16.51 1.57 38.50 2.71
366 367 7.684062 AAAATTTCACGTGTCTCAAGAAATG 57.316 32.000 16.51 0.00 38.50 2.32
438 439 9.979578 ACAAAATGTAAAGCAATTGTCAGATTA 57.020 25.926 7.40 0.00 36.89 1.75
439 440 8.891671 ACAAAATGTAAAGCAATTGTCAGATT 57.108 26.923 7.40 0.00 36.89 2.40
440 441 8.767085 CAACAAAATGTAAAGCAATTGTCAGAT 58.233 29.630 7.40 0.00 39.02 2.90
441 442 7.254387 GCAACAAAATGTAAAGCAATTGTCAGA 60.254 33.333 7.40 0.00 39.02 3.27
442 443 6.847289 GCAACAAAATGTAAAGCAATTGTCAG 59.153 34.615 7.40 0.00 39.02 3.51
443 444 6.509199 CGCAACAAAATGTAAAGCAATTGTCA 60.509 34.615 7.40 0.30 39.02 3.58
444 445 5.840267 CGCAACAAAATGTAAAGCAATTGTC 59.160 36.000 7.40 0.00 39.02 3.18
445 446 5.521735 TCGCAACAAAATGTAAAGCAATTGT 59.478 32.000 7.40 0.00 40.54 2.71
446 447 5.972018 TCGCAACAAAATGTAAAGCAATTG 58.028 33.333 0.00 0.00 35.44 2.32
447 448 6.595772 TTCGCAACAAAATGTAAAGCAATT 57.404 29.167 0.00 0.00 0.00 2.32
448 449 6.423302 TCATTCGCAACAAAATGTAAAGCAAT 59.577 30.769 0.00 0.00 35.02 3.56
449 450 5.750547 TCATTCGCAACAAAATGTAAAGCAA 59.249 32.000 0.00 0.00 35.02 3.91
450 451 5.284864 TCATTCGCAACAAAATGTAAAGCA 58.715 33.333 0.00 0.00 35.02 3.91
451 452 5.820926 TCATTCGCAACAAAATGTAAAGC 57.179 34.783 0.00 0.00 35.02 3.51
452 453 7.159437 TGTTCATTCGCAACAAAATGTAAAG 57.841 32.000 0.00 0.00 35.02 1.85
453 454 7.525688 TTGTTCATTCGCAACAAAATGTAAA 57.474 28.000 0.00 0.00 40.08 2.01
454 455 7.706281 ATTGTTCATTCGCAACAAAATGTAA 57.294 28.000 3.72 0.00 44.73 2.41
455 456 7.095857 GGAATTGTTCATTCGCAACAAAATGTA 60.096 33.333 3.72 0.00 44.73 2.29
456 457 6.292811 GGAATTGTTCATTCGCAACAAAATGT 60.293 34.615 3.72 0.00 44.73 2.71
457 458 6.072733 GGAATTGTTCATTCGCAACAAAATG 58.927 36.000 3.72 0.00 44.73 2.32
458 459 5.990996 AGGAATTGTTCATTCGCAACAAAAT 59.009 32.000 3.72 0.00 44.73 1.82
459 460 5.355596 AGGAATTGTTCATTCGCAACAAAA 58.644 33.333 3.72 0.00 44.73 2.44
460 461 4.942852 AGGAATTGTTCATTCGCAACAAA 58.057 34.783 3.72 0.00 44.73 2.83
461 462 4.582701 AGGAATTGTTCATTCGCAACAA 57.417 36.364 2.22 2.22 45.43 2.83
462 463 4.582701 AAGGAATTGTTCATTCGCAACA 57.417 36.364 0.00 0.00 42.27 3.33
463 464 5.918011 TGTAAAGGAATTGTTCATTCGCAAC 59.082 36.000 0.00 0.00 42.27 4.17
464 465 6.078202 TGTAAAGGAATTGTTCATTCGCAA 57.922 33.333 0.00 0.00 42.27 4.85
465 466 5.697473 TGTAAAGGAATTGTTCATTCGCA 57.303 34.783 0.00 0.00 42.27 5.10
466 467 7.581011 AAATGTAAAGGAATTGTTCATTCGC 57.419 32.000 0.00 0.00 42.27 4.70
473 474 9.810545 TCGAAAGAAAAATGTAAAGGAATTGTT 57.189 25.926 0.00 0.00 37.03 2.83
492 493 4.518590 TGCAGGAATTGTTCATTCGAAAGA 59.481 37.500 0.00 0.00 42.27 2.52
493 494 4.797471 TGCAGGAATTGTTCATTCGAAAG 58.203 39.130 0.00 0.00 42.27 2.62
494 495 4.844998 TGCAGGAATTGTTCATTCGAAA 57.155 36.364 0.00 0.00 42.27 3.46
495 496 4.844998 TTGCAGGAATTGTTCATTCGAA 57.155 36.364 0.00 0.00 42.27 3.71
496 497 4.844998 TTTGCAGGAATTGTTCATTCGA 57.155 36.364 0.00 0.00 42.27 3.71
497 498 5.903764 TTTTTGCAGGAATTGTTCATTCG 57.096 34.783 0.00 0.00 42.27 3.34
520 521 9.877178 TGTTAACACAATGTAAAGGAATTGTTT 57.123 25.926 3.59 1.52 42.85 2.83
824 830 3.193267 GGTCCAATTTCAGCAGCAACATA 59.807 43.478 0.00 0.00 0.00 2.29
825 831 2.028748 GGTCCAATTTCAGCAGCAACAT 60.029 45.455 0.00 0.00 0.00 2.71
1139 1147 6.738649 GCAGATCAACGAAAGAACAAAGATAC 59.261 38.462 0.00 0.00 0.00 2.24
1147 1155 4.999751 AGAAGCAGATCAACGAAAGAAC 57.000 40.909 0.00 0.00 0.00 3.01
1185 1194 3.255888 TCATCTATGCCTGGTAACTAGCG 59.744 47.826 0.00 0.00 38.02 4.26
1235 1244 3.319031 AGCCAAATATTCCCCTCCTTG 57.681 47.619 0.00 0.00 0.00 3.61
1323 1334 1.463553 AAAGCCTTCGCAAAGTGGGG 61.464 55.000 0.00 0.00 37.52 4.96
1324 1335 0.389025 AAAAGCCTTCGCAAAGTGGG 59.611 50.000 0.00 0.00 37.52 4.61
1394 1412 4.736793 CGGCAATGAAAGATAATGCAGTTC 59.263 41.667 0.00 0.00 38.73 3.01
1410 1428 0.962356 AGAGCTCAAACCCGGCAATG 60.962 55.000 17.77 0.00 0.00 2.82
1495 1516 9.689501 AAAAGATCCGGTCTGGTTTTTATATAA 57.310 29.630 0.00 0.00 37.23 0.98
1550 1571 9.774742 CCAGCTACTCAATTTAGTTAATTCAAC 57.225 33.333 0.00 0.00 34.19 3.18
1626 1663 0.384309 TCGATGGATACGGTGAGCAC 59.616 55.000 0.00 0.00 42.51 4.40
1974 2099 8.951243 TGGAATTTCATAAATGTTGTATCGTCA 58.049 29.630 0.00 0.00 0.00 4.35
2035 2160 4.918588 TGGACTTTTCATACCTTCCCTTC 58.081 43.478 0.00 0.00 0.00 3.46
2040 2165 8.265764 ACCTACTTATGGACTTTTCATACCTTC 58.734 37.037 0.00 0.00 0.00 3.46
2041 2166 8.159229 ACCTACTTATGGACTTTTCATACCTT 57.841 34.615 0.00 0.00 0.00 3.50
2043 2168 9.895138 TTAACCTACTTATGGACTTTTCATACC 57.105 33.333 0.00 0.00 0.00 2.73
2129 2260 5.767168 GCCATACTAGGAAGCATCAGAATTT 59.233 40.000 0.00 0.00 0.00 1.82
2139 2270 2.808567 GCTCAAGGCCATACTAGGAAGC 60.809 54.545 5.01 0.00 34.27 3.86
2150 2281 2.094078 GCAACAATATTGCTCAAGGCCA 60.094 45.455 15.48 0.00 41.87 5.36
2151 2282 2.543641 GCAACAATATTGCTCAAGGCC 58.456 47.619 15.48 0.00 41.87 5.19
2178 2309 8.699130 ACCATTACACTAGGTATAACAGGTAAC 58.301 37.037 0.00 0.00 32.92 2.50
2278 2409 8.532819 ACCACAACAAAAGAACCTAAACAATTA 58.467 29.630 0.00 0.00 0.00 1.40
2295 2426 2.728007 TGTCACCATCAACCACAACAA 58.272 42.857 0.00 0.00 0.00 2.83
2372 2505 3.338249 CCCTACACAACAGGAACATCAG 58.662 50.000 0.00 0.00 34.91 2.90
2479 2612 8.601845 ATGCAAATGTACTTAAAAAGGGTTTC 57.398 30.769 0.00 0.00 0.00 2.78
2480 2613 8.972458 AATGCAAATGTACTTAAAAAGGGTTT 57.028 26.923 0.00 0.00 0.00 3.27
2495 2628 3.238597 AGGTGTTGGGTAATGCAAATGT 58.761 40.909 0.00 0.00 0.00 2.71
2499 2632 6.665680 ACATAATTAGGTGTTGGGTAATGCAA 59.334 34.615 1.21 0.00 0.00 4.08
2506 2639 3.264964 ACGGACATAATTAGGTGTTGGGT 59.735 43.478 7.63 0.00 0.00 4.51
2509 2642 9.193133 CTAATCTACGGACATAATTAGGTGTTG 57.807 37.037 7.63 2.17 0.00 3.33
2615 2805 5.454966 TGCTAGAGGTTACCACATATCTCA 58.545 41.667 3.51 0.00 0.00 3.27
2676 2866 2.810400 CGGGTGCCCCATCAATAGTTAG 60.810 54.545 10.47 0.00 45.83 2.34
2677 2867 1.142060 CGGGTGCCCCATCAATAGTTA 59.858 52.381 10.47 0.00 45.83 2.24
2678 2868 0.106719 CGGGTGCCCCATCAATAGTT 60.107 55.000 10.47 0.00 45.83 2.24
2696 2891 0.179200 GCGCACCAGTGGAAATTACG 60.179 55.000 18.40 10.59 0.00 3.18
2704 2899 2.034879 AGAAATCGCGCACCAGTGG 61.035 57.895 7.91 7.91 0.00 4.00
2709 2904 2.032634 TGGTCAGAAATCGCGCACC 61.033 57.895 8.75 5.12 0.00 5.01
2722 2917 2.288666 GCTGTCAGAAACTTGTGGTCA 58.711 47.619 3.32 0.00 0.00 4.02
2742 2937 2.488153 GGAGAAAAACGATCAGGTTGGG 59.512 50.000 0.00 0.00 0.00 4.12
2749 2944 2.556622 GCAAAGGGGAGAAAAACGATCA 59.443 45.455 0.00 0.00 0.00 2.92
2751 2946 2.820197 GAGCAAAGGGGAGAAAAACGAT 59.180 45.455 0.00 0.00 0.00 3.73
2752 2947 2.158667 AGAGCAAAGGGGAGAAAAACGA 60.159 45.455 0.00 0.00 0.00 3.85
2772 2967 7.385205 ACTGCGTCTTATGCAACCTATTATTAG 59.615 37.037 0.00 0.00 39.98 1.73
2803 2998 7.066307 ACAAAGCAGAAGGAAAACCAAATAT 57.934 32.000 0.00 0.00 0.00 1.28
2804 2999 6.478512 ACAAAGCAGAAGGAAAACCAAATA 57.521 33.333 0.00 0.00 0.00 1.40
2805 3000 5.357742 ACAAAGCAGAAGGAAAACCAAAT 57.642 34.783 0.00 0.00 0.00 2.32
2806 3001 4.817318 ACAAAGCAGAAGGAAAACCAAA 57.183 36.364 0.00 0.00 0.00 3.28
2807 3002 4.953579 AGTACAAAGCAGAAGGAAAACCAA 59.046 37.500 0.00 0.00 0.00 3.67
2808 3003 4.532834 AGTACAAAGCAGAAGGAAAACCA 58.467 39.130 0.00 0.00 0.00 3.67
2809 3004 5.281727 CAAGTACAAAGCAGAAGGAAAACC 58.718 41.667 0.00 0.00 0.00 3.27
2810 3005 5.163550 ACCAAGTACAAAGCAGAAGGAAAAC 60.164 40.000 0.00 0.00 0.00 2.43
2811 3006 4.953579 ACCAAGTACAAAGCAGAAGGAAAA 59.046 37.500 0.00 0.00 0.00 2.29
2812 3007 4.532834 ACCAAGTACAAAGCAGAAGGAAA 58.467 39.130 0.00 0.00 0.00 3.13
2813 3008 4.134563 GACCAAGTACAAAGCAGAAGGAA 58.865 43.478 0.00 0.00 0.00 3.36
2927 3126 5.645497 CCAAAATAAGTGTCTCAAGAGGGAG 59.355 44.000 0.00 0.00 36.21 4.30
2929 3128 4.702131 CCCAAAATAAGTGTCTCAAGAGGG 59.298 45.833 0.00 0.00 0.00 4.30
2930 3129 5.412904 GTCCCAAAATAAGTGTCTCAAGAGG 59.587 44.000 0.00 0.00 0.00 3.69
2931 3130 5.120830 CGTCCCAAAATAAGTGTCTCAAGAG 59.879 44.000 0.00 0.00 0.00 2.85
2932 3131 4.994852 CGTCCCAAAATAAGTGTCTCAAGA 59.005 41.667 0.00 0.00 0.00 3.02
2933 3132 4.154195 CCGTCCCAAAATAAGTGTCTCAAG 59.846 45.833 0.00 0.00 0.00 3.02
2934 3133 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2935 3134 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2936 3135 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2937 3136 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2938 3137 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2939 3138 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2940 3139 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2941 3140 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2942 3141 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2943 3142 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2944 3143 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2945 3144 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2946 3145 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2947 3146 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2948 3147 2.852714 TAATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
2949 3148 3.140707 TGTATAATACTCCCTCCGTCCCA 59.859 47.826 0.00 0.00 0.00 4.37
2950 3149 3.771216 TGTATAATACTCCCTCCGTCCC 58.229 50.000 0.00 0.00 0.00 4.46
2951 3150 5.715753 AGATTGTATAATACTCCCTCCGTCC 59.284 44.000 0.00 0.00 0.00 4.79
2952 3151 6.837471 AGATTGTATAATACTCCCTCCGTC 57.163 41.667 0.00 0.00 0.00 4.79
2953 3152 7.613551 AAAGATTGTATAATACTCCCTCCGT 57.386 36.000 0.00 0.00 0.00 4.69
2954 3153 8.904099 AAAAAGATTGTATAATACTCCCTCCG 57.096 34.615 0.00 0.00 0.00 4.63
3064 3267 9.997482 TGTTTACATAGAAAGTTTGTGTCTTTC 57.003 29.630 9.49 9.49 46.20 2.62
3087 3290 9.836076 GTTTAAGAGTGAAAAGTTTGTACTGTT 57.164 29.630 14.91 14.91 34.44 3.16
3136 3339 6.039382 AGTTTTGCCTTACTGGTAGAAAGTTG 59.961 38.462 0.00 0.00 38.35 3.16
3204 3407 3.990318 AAAGTTGAACTAAGGCAGTGC 57.010 42.857 6.55 6.55 37.63 4.40
3213 3416 6.484308 GCCCACTTTGTACTAAAGTTGAACTA 59.516 38.462 16.06 0.00 38.32 2.24
3215 3418 5.066764 TGCCCACTTTGTACTAAAGTTGAAC 59.933 40.000 16.06 11.09 38.32 3.18
3216 3419 5.194432 TGCCCACTTTGTACTAAAGTTGAA 58.806 37.500 16.06 7.02 38.32 2.69
3217 3420 4.783055 TGCCCACTTTGTACTAAAGTTGA 58.217 39.130 16.06 2.26 38.32 3.18
3218 3421 5.508200 TTGCCCACTTTGTACTAAAGTTG 57.492 39.130 16.06 13.70 38.32 3.16
3219 3422 6.724893 AATTGCCCACTTTGTACTAAAGTT 57.275 33.333 16.06 3.97 38.32 2.66
3220 3423 7.826918 TTAATTGCCCACTTTGTACTAAAGT 57.173 32.000 14.04 14.04 40.80 2.66
3221 3424 9.705290 AAATTAATTGCCCACTTTGTACTAAAG 57.295 29.630 0.39 13.08 0.00 1.85
3224 3427 7.451877 TCCAAATTAATTGCCCACTTTGTACTA 59.548 33.333 0.39 0.00 37.73 1.82
3226 3429 6.459923 TCCAAATTAATTGCCCACTTTGTAC 58.540 36.000 0.39 0.00 37.73 2.90
3237 3440 3.888930 TCCCTCCGATCCAAATTAATTGC 59.111 43.478 0.39 0.00 37.73 3.56
3249 3452 2.351706 AGTCTGTACTCCCTCCGATC 57.648 55.000 0.00 0.00 0.00 3.69
3252 3455 6.651975 AATATAAAGTCTGTACTCCCTCCG 57.348 41.667 0.00 0.00 33.75 4.63
3293 3496 8.788325 AGTAGAAAGTTCTGTTTTGTTAGTGT 57.212 30.769 3.76 0.00 38.19 3.55
3393 3634 8.470002 GCTTTGGACTATGGTTATTTCTCATTT 58.530 33.333 0.00 0.00 0.00 2.32
3432 3673 3.880490 ACGTACCAAAGCTTTTCATGTGA 59.120 39.130 9.53 0.00 0.00 3.58
3451 3692 1.153369 ACAGAACACAGCTGCACGT 60.153 52.632 15.27 5.86 36.86 4.49
3455 3696 1.586422 TTCAGACAGAACACAGCTGC 58.414 50.000 15.27 0.00 36.86 5.25
3456 3697 3.562973 ACATTTCAGACAGAACACAGCTG 59.437 43.478 13.48 13.48 35.56 4.24
3496 3739 0.028902 GCTGAAAAGTTTCACCGCGT 59.971 50.000 4.92 0.00 41.88 6.01
3531 3775 7.832503 AAAAATTCATACAATTAGCAGCCAC 57.167 32.000 0.00 0.00 0.00 5.01
3560 3805 1.888436 CTGTGCACTCGCTTCCCCTA 61.888 60.000 19.41 0.00 39.64 3.53
3590 3835 4.511826 AGATAATTACTTTAGCAGCCACGC 59.488 41.667 0.00 0.00 0.00 5.34
3591 3836 7.709269 TTAGATAATTACTTTAGCAGCCACG 57.291 36.000 0.00 0.00 0.00 4.94
3592 3837 8.062448 CGTTTAGATAATTACTTTAGCAGCCAC 58.938 37.037 0.00 0.00 0.00 5.01
3593 3838 7.254658 GCGTTTAGATAATTACTTTAGCAGCCA 60.255 37.037 0.00 0.00 0.00 4.75
3594 3839 7.041984 AGCGTTTAGATAATTACTTTAGCAGCC 60.042 37.037 0.00 0.00 0.00 4.85
3595 3840 7.852516 AGCGTTTAGATAATTACTTTAGCAGC 58.147 34.615 0.00 0.00 0.00 5.25
3596 3841 9.250624 AGAGCGTTTAGATAATTACTTTAGCAG 57.749 33.333 0.00 0.00 0.00 4.24
3617 3877 4.210120 ACTCCGTAACGTACTATAAGAGCG 59.790 45.833 0.00 0.00 0.00 5.03
3627 3887 3.737305 GTGTACTCACTCCGTAACGTAC 58.263 50.000 0.00 0.00 40.98 3.67
3640 3900 5.803461 GTGTTGCGTTCATATAGTGTACTCA 59.197 40.000 0.00 0.00 0.00 3.41
3648 3908 4.864916 AGCTTGTGTTGCGTTCATATAG 57.135 40.909 0.00 0.00 35.28 1.31
3690 3950 2.307392 TGCACCTAGTCCAGCCAATTAA 59.693 45.455 0.00 0.00 0.00 1.40
3691 3951 1.912731 TGCACCTAGTCCAGCCAATTA 59.087 47.619 0.00 0.00 0.00 1.40
3692 3952 0.698238 TGCACCTAGTCCAGCCAATT 59.302 50.000 0.00 0.00 0.00 2.32
3693 3953 0.921896 ATGCACCTAGTCCAGCCAAT 59.078 50.000 0.00 0.00 0.00 3.16
3694 3954 0.698238 AATGCACCTAGTCCAGCCAA 59.302 50.000 0.00 0.00 0.00 4.52
3695 3955 1.578897 TAATGCACCTAGTCCAGCCA 58.421 50.000 0.00 0.00 0.00 4.75
3696 3956 2.710096 TTAATGCACCTAGTCCAGCC 57.290 50.000 0.00 0.00 0.00 4.85
3697 3957 4.035675 GTGAATTAATGCACCTAGTCCAGC 59.964 45.833 14.89 0.00 0.00 4.85
3698 3958 5.431765 AGTGAATTAATGCACCTAGTCCAG 58.568 41.667 21.01 0.00 35.67 3.86
3699 3959 5.435686 AGTGAATTAATGCACCTAGTCCA 57.564 39.130 21.01 0.00 35.67 4.02
3700 3960 7.553044 ACTTAAGTGAATTAATGCACCTAGTCC 59.447 37.037 21.01 0.00 35.67 3.85
3701 3961 8.494016 ACTTAAGTGAATTAATGCACCTAGTC 57.506 34.615 21.01 0.00 35.67 2.59
3702 3962 8.863872 AACTTAAGTGAATTAATGCACCTAGT 57.136 30.769 21.01 17.66 35.67 2.57
3752 4012 5.531634 TCAACAACATTTCAAAGCATCTCC 58.468 37.500 0.00 0.00 0.00 3.71
3844 4111 4.611310 ATGAACGAAACAGATGATGCAG 57.389 40.909 0.00 0.00 0.00 4.41
3871 4138 5.769162 TGTGAGATCAATGACAACCAATCAA 59.231 36.000 0.00 0.00 0.00 2.57
3903 4177 4.336713 AGAGAAGCAAACAAGTGAGTTTCC 59.663 41.667 0.00 0.00 39.55 3.13
3918 4192 2.158769 TGAAGGCAACAAGAGAGAAGCA 60.159 45.455 0.00 0.00 41.41 3.91
3919 4193 2.225255 GTGAAGGCAACAAGAGAGAAGC 59.775 50.000 0.00 0.00 41.41 3.86
3923 4197 3.546815 CGTTTGTGAAGGCAACAAGAGAG 60.547 47.826 0.00 0.00 41.41 3.20
3924 4198 2.354510 CGTTTGTGAAGGCAACAAGAGA 59.645 45.455 0.00 0.00 41.41 3.10
3925 4199 2.541588 CCGTTTGTGAAGGCAACAAGAG 60.542 50.000 0.00 0.00 41.41 2.85
3926 4200 1.403679 CCGTTTGTGAAGGCAACAAGA 59.596 47.619 0.00 0.00 41.41 3.02
3927 4201 1.403679 TCCGTTTGTGAAGGCAACAAG 59.596 47.619 0.00 0.00 41.41 3.16
3929 4203 1.686355 ATCCGTTTGTGAAGGCAACA 58.314 45.000 0.00 0.00 41.41 3.33
3938 4245 4.621068 AAGATGTGCATATCCGTTTGTG 57.379 40.909 18.72 0.00 0.00 3.33
3965 4272 5.919755 TGTGTCCAGACAAGTAAATGTGTA 58.080 37.500 1.23 0.00 43.77 2.90
3966 4273 4.776349 TGTGTCCAGACAAGTAAATGTGT 58.224 39.130 1.23 0.00 43.77 3.72
3967 4274 5.947228 ATGTGTCCAGACAAGTAAATGTG 57.053 39.130 1.23 0.00 43.77 3.21
3968 4275 6.017109 GTGAATGTGTCCAGACAAGTAAATGT 60.017 38.462 1.23 0.00 43.77 2.71
3969 4276 6.205464 AGTGAATGTGTCCAGACAAGTAAATG 59.795 38.462 1.23 0.00 43.77 2.32
3970 4277 6.299141 AGTGAATGTGTCCAGACAAGTAAAT 58.701 36.000 1.23 0.00 43.77 1.40
3971 4278 5.680619 AGTGAATGTGTCCAGACAAGTAAA 58.319 37.500 1.23 0.00 43.77 2.01
3972 4279 5.290493 AGTGAATGTGTCCAGACAAGTAA 57.710 39.130 1.23 0.00 43.77 2.24
3973 4280 4.955811 AGTGAATGTGTCCAGACAAGTA 57.044 40.909 1.23 0.00 43.77 2.24
3974 4281 3.845781 AGTGAATGTGTCCAGACAAGT 57.154 42.857 1.23 0.00 43.77 3.16
3975 4282 3.304257 GCAAGTGAATGTGTCCAGACAAG 60.304 47.826 1.23 0.00 43.77 3.16
3976 4283 2.618241 GCAAGTGAATGTGTCCAGACAA 59.382 45.455 1.23 0.00 43.77 3.18
3977 4284 2.158769 AGCAAGTGAATGTGTCCAGACA 60.159 45.455 0.00 0.00 39.32 3.41
3978 4285 2.498167 AGCAAGTGAATGTGTCCAGAC 58.502 47.619 0.00 0.00 0.00 3.51
3979 4286 2.936919 AGCAAGTGAATGTGTCCAGA 57.063 45.000 0.00 0.00 0.00 3.86
3980 4287 3.067180 ACAAAGCAAGTGAATGTGTCCAG 59.933 43.478 0.00 0.00 0.00 3.86
3981 4288 3.023119 ACAAAGCAAGTGAATGTGTCCA 58.977 40.909 0.00 0.00 0.00 4.02
3982 4289 3.715628 ACAAAGCAAGTGAATGTGTCC 57.284 42.857 0.00 0.00 0.00 4.02
3983 4290 7.558137 CATTTAACAAAGCAAGTGAATGTGTC 58.442 34.615 0.00 0.00 0.00 3.67
3984 4291 6.018832 GCATTTAACAAAGCAAGTGAATGTGT 60.019 34.615 0.00 0.00 31.44 3.72
3985 4292 6.018913 TGCATTTAACAAAGCAAGTGAATGTG 60.019 34.615 0.00 0.00 33.48 3.21
3986 4293 6.047870 TGCATTTAACAAAGCAAGTGAATGT 58.952 32.000 0.00 0.00 33.48 2.71
3987 4294 6.528014 TGCATTTAACAAAGCAAGTGAATG 57.472 33.333 0.00 0.00 33.48 2.67
3995 4302 7.205992 TCTGTGTTATTGCATTTAACAAAGCA 58.794 30.769 23.27 16.35 41.56 3.91
3996 4303 7.636259 TCTGTGTTATTGCATTTAACAAAGC 57.364 32.000 23.27 13.90 41.56 3.51
3997 4304 9.848172 GTTTCTGTGTTATTGCATTTAACAAAG 57.152 29.630 22.62 22.62 42.48 2.77
3998 4305 9.593134 AGTTTCTGTGTTATTGCATTTAACAAA 57.407 25.926 18.87 14.77 40.26 2.83
4004 4311 9.762933 ACAATTAGTTTCTGTGTTATTGCATTT 57.237 25.926 0.00 0.00 0.00 2.32
4005 4312 9.410556 GACAATTAGTTTCTGTGTTATTGCATT 57.589 29.630 0.00 0.00 0.00 3.56
4006 4313 8.028938 GGACAATTAGTTTCTGTGTTATTGCAT 58.971 33.333 0.00 0.00 0.00 3.96
4007 4314 7.230510 AGGACAATTAGTTTCTGTGTTATTGCA 59.769 33.333 0.00 0.00 0.00 4.08
4008 4315 7.593825 AGGACAATTAGTTTCTGTGTTATTGC 58.406 34.615 0.00 0.00 0.00 3.56
4009 4316 9.965824 AAAGGACAATTAGTTTCTGTGTTATTG 57.034 29.630 0.00 0.00 0.00 1.90
4036 4423 1.567504 CCGACGGTCTGCGAAATTAT 58.432 50.000 5.48 0.00 0.00 1.28
4053 4440 0.102120 TTGCAAAGCACTTGTTCCCG 59.898 50.000 0.00 0.00 38.71 5.14
4167 4554 2.555547 GCTGAACAAAGCACGGCCT 61.556 57.895 0.00 0.00 43.01 5.19
4173 4560 1.034838 AACGGTGGCTGAACAAAGCA 61.035 50.000 0.00 0.00 45.43 3.91
4185 4572 2.496070 TCACCTCATCTCTTAACGGTGG 59.504 50.000 0.00 0.00 41.58 4.61
4240 4643 5.688621 TGTTACTGTATTCTGACGACACAAC 59.311 40.000 0.00 0.00 0.00 3.32
4286 4689 2.667199 CCGACGGAACCAACACCC 60.667 66.667 8.64 0.00 0.00 4.61
4311 4715 3.155093 AGAATGGCGCAATGAAACATC 57.845 42.857 10.83 0.00 0.00 3.06
4314 4718 2.423538 ACCTAGAATGGCGCAATGAAAC 59.576 45.455 10.83 0.00 0.00 2.78
4406 4811 4.265556 CGAGGTTATTACGAGTTTGCTCAG 59.734 45.833 0.00 0.00 41.71 3.35
4407 4812 4.171005 CGAGGTTATTACGAGTTTGCTCA 58.829 43.478 0.00 0.00 41.71 4.26
4408 4813 4.031426 CACGAGGTTATTACGAGTTTGCTC 59.969 45.833 0.00 0.00 38.35 4.26
4409 4814 3.924686 CACGAGGTTATTACGAGTTTGCT 59.075 43.478 0.00 0.00 0.00 3.91
4410 4815 3.483085 GCACGAGGTTATTACGAGTTTGC 60.483 47.826 0.00 0.00 0.00 3.68
4449 4858 4.798924 GCATGTAACATCTGGGCAAAACAA 60.799 41.667 0.00 0.00 0.00 2.83
4467 4876 2.485426 CGATTCACCTGAACTTGCATGT 59.515 45.455 0.00 0.00 36.80 3.21
4468 4877 2.159476 CCGATTCACCTGAACTTGCATG 60.159 50.000 0.00 0.00 36.80 4.06
4469 4878 2.086869 CCGATTCACCTGAACTTGCAT 58.913 47.619 0.00 0.00 36.80 3.96
4470 4879 1.522668 CCGATTCACCTGAACTTGCA 58.477 50.000 0.00 0.00 36.80 4.08
4471 4880 0.169009 GCCGATTCACCTGAACTTGC 59.831 55.000 0.00 0.00 36.80 4.01
4472 4881 1.522668 TGCCGATTCACCTGAACTTG 58.477 50.000 0.00 0.00 36.80 3.16
4473 4882 2.154462 CTTGCCGATTCACCTGAACTT 58.846 47.619 0.00 0.00 36.80 2.66
4529 4950 4.156008 CGTGCCTTTTTGCTAGTAATCCTT 59.844 41.667 0.00 0.00 0.00 3.36
4550 4971 0.396435 TCTCCCATTGCAACTCACGT 59.604 50.000 0.00 0.00 0.00 4.49
4555 4976 4.751767 TTTTGTTTCTCCCATTGCAACT 57.248 36.364 0.00 0.00 0.00 3.16
4611 5036 4.207165 GGGCCATAGCTACAAATTCTCAA 58.793 43.478 4.39 0.00 39.73 3.02
4628 5053 1.133199 AGACCATCTTTGTTTGGGCCA 60.133 47.619 0.00 0.00 42.45 5.36
4661 5086 6.281405 ACACCTATAGAATCTTAAACTGCGG 58.719 40.000 0.00 0.00 0.00 5.69
4687 5112 3.005261 ACATGCAAGCCGTGTTGAAATAA 59.995 39.130 0.00 0.00 40.77 1.40
4728 5153 2.629137 TGCATGATCACTTGCCTGTTTT 59.371 40.909 16.66 0.00 43.51 2.43
4756 5181 3.971305 ACCCCTATTCCGAACATGACATA 59.029 43.478 0.00 0.00 0.00 2.29
4773 5198 0.399519 CCCCTATTACGGACACCCCT 60.400 60.000 0.00 0.00 0.00 4.79
4777 5202 1.556451 ACAACCCCCTATTACGGACAC 59.444 52.381 0.00 0.00 0.00 3.67
4778 5203 1.955451 ACAACCCCCTATTACGGACA 58.045 50.000 0.00 0.00 0.00 4.02
4779 5204 3.737972 CGTAACAACCCCCTATTACGGAC 60.738 52.174 7.34 0.00 43.75 4.79
4780 5205 2.430332 CGTAACAACCCCCTATTACGGA 59.570 50.000 7.34 0.00 43.75 4.69
4781 5206 2.825205 CGTAACAACCCCCTATTACGG 58.175 52.381 7.34 0.00 43.75 4.02
4782 5207 2.483538 CCCGTAACAACCCCCTATTACG 60.484 54.545 8.09 8.09 45.86 3.18
4783 5208 2.746142 GCCCGTAACAACCCCCTATTAC 60.746 54.545 0.00 0.00 0.00 1.89
4784 5209 1.490069 GCCCGTAACAACCCCCTATTA 59.510 52.381 0.00 0.00 0.00 0.98
4785 5210 0.256752 GCCCGTAACAACCCCCTATT 59.743 55.000 0.00 0.00 0.00 1.73
4786 5211 0.915387 TGCCCGTAACAACCCCCTAT 60.915 55.000 0.00 0.00 0.00 2.57
4787 5212 1.132554 TTGCCCGTAACAACCCCCTA 61.133 55.000 0.00 0.00 0.00 3.53
4788 5213 2.420466 CTTGCCCGTAACAACCCCCT 62.420 60.000 0.00 0.00 0.00 4.79
4789 5214 1.974875 CTTGCCCGTAACAACCCCC 60.975 63.158 0.00 0.00 0.00 5.40
4790 5215 0.036590 TACTTGCCCGTAACAACCCC 59.963 55.000 0.00 0.00 0.00 4.95
4791 5216 1.894881 TTACTTGCCCGTAACAACCC 58.105 50.000 0.00 0.00 0.00 4.11
4792 5217 3.140623 TCTTTACTTGCCCGTAACAACC 58.859 45.455 0.00 0.00 0.00 3.77
4835 5260 3.257375 TCTCCGTAGTGTGCTAATGTGTT 59.743 43.478 0.00 0.00 0.00 3.32
4840 5265 2.846039 CGTCTCCGTAGTGTGCTAAT 57.154 50.000 0.00 0.00 0.00 1.73
4852 5277 1.854743 CTATTGATGCACACGTCTCCG 59.145 52.381 0.00 0.00 40.83 4.63
4853 5278 1.594862 GCTATTGATGCACACGTCTCC 59.405 52.381 0.00 0.00 32.64 3.71
4854 5279 2.270923 TGCTATTGATGCACACGTCTC 58.729 47.619 0.00 0.00 35.31 3.36
4855 5280 2.274437 CTGCTATTGATGCACACGTCT 58.726 47.619 0.00 0.00 36.37 4.18
4856 5281 2.002586 ACTGCTATTGATGCACACGTC 58.997 47.619 0.00 0.00 36.37 4.34
4857 5282 2.099141 ACTGCTATTGATGCACACGT 57.901 45.000 0.00 0.00 36.37 4.49
4858 5283 3.476295 AAACTGCTATTGATGCACACG 57.524 42.857 0.00 0.00 36.37 4.49
4859 5284 4.797471 TCAAAACTGCTATTGATGCACAC 58.203 39.130 0.00 0.00 36.37 3.82
4860 5285 4.520111 ACTCAAAACTGCTATTGATGCACA 59.480 37.500 0.00 0.00 35.20 4.57
4861 5286 5.051891 ACTCAAAACTGCTATTGATGCAC 57.948 39.130 0.00 0.00 35.20 4.57
4862 5287 5.710513 AACTCAAAACTGCTATTGATGCA 57.289 34.783 0.00 0.00 35.20 3.96
4863 5288 8.023128 TCTTAAACTCAAAACTGCTATTGATGC 58.977 33.333 0.00 0.00 35.20 3.91
4864 5289 9.897744 TTCTTAAACTCAAAACTGCTATTGATG 57.102 29.630 0.00 0.00 35.20 3.07
4867 5292 9.897744 TGATTCTTAAACTCAAAACTGCTATTG 57.102 29.630 0.00 0.00 0.00 1.90
4868 5293 9.899226 GTGATTCTTAAACTCAAAACTGCTATT 57.101 29.630 0.00 0.00 0.00 1.73
4869 5294 8.515414 GGTGATTCTTAAACTCAAAACTGCTAT 58.485 33.333 0.00 0.00 0.00 2.97
4870 5295 7.500892 TGGTGATTCTTAAACTCAAAACTGCTA 59.499 33.333 0.00 0.00 0.00 3.49
4871 5296 6.321181 TGGTGATTCTTAAACTCAAAACTGCT 59.679 34.615 0.00 0.00 0.00 4.24
4872 5297 6.503524 TGGTGATTCTTAAACTCAAAACTGC 58.496 36.000 0.00 0.00 0.00 4.40
4873 5298 9.533253 AATTGGTGATTCTTAAACTCAAAACTG 57.467 29.630 0.00 0.00 0.00 3.16
4876 5301 9.691362 GCTAATTGGTGATTCTTAAACTCAAAA 57.309 29.630 0.00 0.00 0.00 2.44
4877 5302 8.855110 TGCTAATTGGTGATTCTTAAACTCAAA 58.145 29.630 0.00 0.00 0.00 2.69
4878 5303 8.296713 GTGCTAATTGGTGATTCTTAAACTCAA 58.703 33.333 0.00 0.00 0.00 3.02
4879 5304 7.446931 TGTGCTAATTGGTGATTCTTAAACTCA 59.553 33.333 0.00 0.00 0.00 3.41
4880 5305 7.750903 GTGTGCTAATTGGTGATTCTTAAACTC 59.249 37.037 0.00 0.00 0.00 3.01
4881 5306 7.448469 AGTGTGCTAATTGGTGATTCTTAAACT 59.552 33.333 0.00 0.00 0.00 2.66
4882 5307 7.593825 AGTGTGCTAATTGGTGATTCTTAAAC 58.406 34.615 0.00 0.00 0.00 2.01
4883 5308 7.759489 AGTGTGCTAATTGGTGATTCTTAAA 57.241 32.000 0.00 0.00 0.00 1.52
4884 5309 7.064134 CGTAGTGTGCTAATTGGTGATTCTTAA 59.936 37.037 0.00 0.00 0.00 1.85
4885 5310 6.533723 CGTAGTGTGCTAATTGGTGATTCTTA 59.466 38.462 0.00 0.00 0.00 2.10
4886 5311 5.351465 CGTAGTGTGCTAATTGGTGATTCTT 59.649 40.000 0.00 0.00 0.00 2.52
4887 5312 4.870426 CGTAGTGTGCTAATTGGTGATTCT 59.130 41.667 0.00 0.00 0.00 2.40
4888 5313 4.034048 CCGTAGTGTGCTAATTGGTGATTC 59.966 45.833 0.00 0.00 0.00 2.52
4889 5314 3.938963 CCGTAGTGTGCTAATTGGTGATT 59.061 43.478 0.00 0.00 0.00 2.57
4890 5315 3.196901 TCCGTAGTGTGCTAATTGGTGAT 59.803 43.478 0.00 0.00 0.00 3.06
4891 5316 2.563620 TCCGTAGTGTGCTAATTGGTGA 59.436 45.455 0.00 0.00 0.00 4.02
4892 5317 2.930040 CTCCGTAGTGTGCTAATTGGTG 59.070 50.000 0.00 0.00 0.00 4.17
4893 5318 2.829720 TCTCCGTAGTGTGCTAATTGGT 59.170 45.455 0.00 0.00 0.00 3.67
4894 5319 3.187700 GTCTCCGTAGTGTGCTAATTGG 58.812 50.000 0.00 0.00 0.00 3.16
4895 5320 3.845178 TGTCTCCGTAGTGTGCTAATTG 58.155 45.455 0.00 0.00 0.00 2.32
4896 5321 4.081642 ACATGTCTCCGTAGTGTGCTAATT 60.082 41.667 0.00 0.00 0.00 1.40
4930 5355 6.321181 TGGTGATTCTTAAACTCAAAACTGCT 59.679 34.615 0.00 0.00 0.00 4.24
4939 5364 8.794335 ATCCTAAGTTGGTGATTCTTAAACTC 57.206 34.615 0.00 0.00 30.95 3.01
4963 5388 8.956426 TGTGAAAAGAAAGTGTTCAAGAGTTAT 58.044 29.630 0.00 0.00 36.09 1.89
5076 5502 9.020731 AGTCCGTATAAAAATGTTCTTTTCCAT 57.979 29.630 0.00 0.00 31.15 3.41
5094 5522 1.664321 GCGTCCACAGGAGTCCGTAT 61.664 60.000 2.76 0.00 29.39 3.06
5097 5525 3.633094 CTGCGTCCACAGGAGTCCG 62.633 68.421 2.76 1.29 33.85 4.79
5152 5582 9.337396 GAAACATGAACCAATACCTATGACATA 57.663 33.333 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.