Multiple sequence alignment - TraesCS6D01G240400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G240400 chr6D 100.000 3289 0 0 1 3289 342025850 342029138 0.000000e+00 6074.0
1 TraesCS6D01G240400 chr6D 100.000 51 0 0 3583 3633 342029432 342029482 1.070000e-15 95.3
2 TraesCS6D01G240400 chr6B 96.190 2625 61 18 1 2608 516485642 516488244 0.000000e+00 4257.0
3 TraesCS6D01G240400 chr6B 97.006 167 4 1 2645 2810 516490776 516490942 2.760000e-71 279.0
4 TraesCS6D01G240400 chr6B 95.556 90 4 0 2646 2735 516490288 516490377 1.050000e-30 145.0
5 TraesCS6D01G240400 chr6A 95.667 2631 84 12 1 2608 482084567 482087190 0.000000e+00 4200.0
6 TraesCS6D01G240400 chr6A 87.919 149 7 5 2606 2753 482087218 482087356 8.070000e-37 165.0
7 TraesCS6D01G240400 chr7A 88.660 97 11 0 3179 3275 61876089 61876185 6.370000e-23 119.0
8 TraesCS6D01G240400 chr5B 84.043 94 15 0 3182 3275 16283366 16283273 1.390000e-14 91.6
9 TraesCS6D01G240400 chrUn 82.353 85 9 5 3182 3261 79237854 79237771 6.510000e-08 69.4
10 TraesCS6D01G240400 chr1A 95.000 40 2 0 3179 3218 249392683 249392722 3.030000e-06 63.9
11 TraesCS6D01G240400 chr2D 92.683 41 2 1 3179 3218 622366132 622366172 1.410000e-04 58.4
12 TraesCS6D01G240400 chr2D 90.000 40 4 0 3182 3221 49197821 49197860 7.000000e-03 52.8
13 TraesCS6D01G240400 chr1D 100.000 29 0 0 3191 3219 480364304 480364332 2.000000e-03 54.7
14 TraesCS6D01G240400 chr7B 100.000 28 0 0 3192 3219 692312972 692312945 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G240400 chr6D 342025850 342029482 3632 False 3084.650000 6074 100.000000 1 3633 2 chr6D.!!$F1 3632
1 TraesCS6D01G240400 chr6B 516485642 516490942 5300 False 1560.333333 4257 96.250667 1 2810 3 chr6B.!!$F1 2809
2 TraesCS6D01G240400 chr6A 482084567 482087356 2789 False 2182.500000 4200 91.793000 1 2753 2 chr6A.!!$F1 2752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
368 377 0.116143 AGCAAGACAGAGGAGGAGGT 59.884 55.000 0.0 0.0 0.00 3.85 F
371 380 0.178921 AAGACAGAGGAGGAGGTGCA 60.179 55.000 0.0 0.0 0.00 4.57 F
373 382 0.613292 GACAGAGGAGGAGGTGCAGA 60.613 60.000 0.0 0.0 0.00 4.26 F
657 675 0.861837 CTTTCAGGTATCCATCGCGC 59.138 55.000 0.0 0.0 0.00 6.86 F
1077 1103 1.070134 TCAAGGAAAGACCACGACCAG 59.930 52.381 0.0 0.0 42.04 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1286 1312 2.259618 GTAGCGCGAGAAATTCAGTGA 58.740 47.619 12.10 0.0 0.00 3.41 R
1298 1324 3.507103 TGTTACCTAAATGTAGCGCGA 57.493 42.857 12.10 0.0 0.00 5.87 R
1418 1444 7.189087 AGGTTGGTTCCATCCTAATTGTAATT 58.811 34.615 17.01 0.0 35.19 1.40 R
2611 2670 1.897560 CTGAAACTTCCTCCACACCC 58.102 55.000 0.00 0.0 0.00 4.61 R
2844 5368 0.387239 AATCGCGTTGCAAGCTTTCC 60.387 50.000 5.77 0.0 0.00 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 1.969589 GTAAGGTTGCCCCACACCG 60.970 63.158 0.00 0.00 34.66 4.94
267 268 3.454447 TCTTCCTCCACAGAAACAGTGAA 59.546 43.478 0.00 0.00 39.30 3.18
365 374 0.251386 ACGAGCAAGACAGAGGAGGA 60.251 55.000 0.00 0.00 0.00 3.71
367 376 0.823460 GAGCAAGACAGAGGAGGAGG 59.177 60.000 0.00 0.00 0.00 4.30
368 377 0.116143 AGCAAGACAGAGGAGGAGGT 59.884 55.000 0.00 0.00 0.00 3.85
370 379 0.248843 CAAGACAGAGGAGGAGGTGC 59.751 60.000 0.00 0.00 0.00 5.01
371 380 0.178921 AAGACAGAGGAGGAGGTGCA 60.179 55.000 0.00 0.00 0.00 4.57
372 381 0.614415 AGACAGAGGAGGAGGTGCAG 60.614 60.000 0.00 0.00 0.00 4.41
373 382 0.613292 GACAGAGGAGGAGGTGCAGA 60.613 60.000 0.00 0.00 0.00 4.26
469 487 5.654209 GGAGCTGAACCCATAATCTTTCTTT 59.346 40.000 0.00 0.00 0.00 2.52
520 538 8.514136 TTGAATTGCCTAACAGTTTTTATTCG 57.486 30.769 0.00 0.00 0.00 3.34
560 578 4.998051 TGTTTTCTCTAAATTGGGGCTCT 58.002 39.130 0.00 0.00 0.00 4.09
568 586 2.231716 AATTGGGGCTCTGGTTAACC 57.768 50.000 18.27 18.27 0.00 2.85
654 672 5.968387 GTGTAACTTTCAGGTATCCATCG 57.032 43.478 0.00 0.00 0.00 3.84
656 674 2.225068 ACTTTCAGGTATCCATCGCG 57.775 50.000 0.00 0.00 0.00 5.87
657 675 0.861837 CTTTCAGGTATCCATCGCGC 59.138 55.000 0.00 0.00 0.00 6.86
684 703 7.176690 ACAGATAAAATCGTTCCCACTTTGATT 59.823 33.333 0.00 0.00 0.00 2.57
754 773 7.173047 GGCATTTTACATGAAAACCAGAAACAT 59.827 33.333 0.00 0.00 39.83 2.71
840 866 2.620627 GGTCCAATGGAGGAAACCGAAT 60.621 50.000 0.27 0.00 39.92 3.34
1077 1103 1.070134 TCAAGGAAAGACCACGACCAG 59.930 52.381 0.00 0.00 42.04 4.00
1175 1201 3.364441 TGAGCTGCGGCGCAATTT 61.364 55.556 35.41 22.73 44.65 1.82
1212 1238 3.642938 GTGCCATACACCTCAACCA 57.357 52.632 0.00 0.00 44.02 3.67
1255 1281 2.741985 CGCACTGCCGATTGGACA 60.742 61.111 1.98 0.00 37.49 4.02
1286 1312 1.463444 GGTTCGCGCTGTAAGTTCAAT 59.537 47.619 5.56 0.00 35.30 2.57
1298 1324 7.571983 CGCTGTAAGTTCAATCACTGAATTTCT 60.572 37.037 0.00 0.00 45.74 2.52
1306 1332 2.259618 TCACTGAATTTCTCGCGCTAC 58.740 47.619 5.56 0.00 0.00 3.58
2608 2636 1.201414 CCTGGGTGATTGTTTTACGGC 59.799 52.381 0.00 0.00 0.00 5.68
2611 2670 0.169451 GGTGATTGTTTTACGGCGGG 59.831 55.000 13.24 0.00 0.00 6.13
2641 2701 1.004277 AAGTTTCAGCGCTCTCGTCG 61.004 55.000 7.13 0.00 38.14 5.12
2642 2702 1.729838 GTTTCAGCGCTCTCGTCGT 60.730 57.895 7.13 0.00 38.14 4.34
2643 2703 1.442184 TTTCAGCGCTCTCGTCGTC 60.442 57.895 7.13 0.00 38.14 4.20
2798 5322 2.095161 GGAGTGTCGTTCGAGTGAGATT 60.095 50.000 0.00 0.00 0.00 2.40
2810 5334 3.496884 CGAGTGAGATTTTGACCGGAAAA 59.503 43.478 9.46 5.89 0.00 2.29
2811 5335 4.610680 CGAGTGAGATTTTGACCGGAAAAC 60.611 45.833 9.46 0.00 0.00 2.43
2812 5336 3.250040 AGTGAGATTTTGACCGGAAAACG 59.750 43.478 9.46 0.00 43.80 3.60
2813 5337 2.031508 TGAGATTTTGACCGGAAAACGC 60.032 45.455 9.46 0.00 42.52 4.84
2814 5338 1.069500 AGATTTTGACCGGAAAACGCG 60.069 47.619 9.46 3.53 42.52 6.01
2815 5339 0.945813 ATTTTGACCGGAAAACGCGA 59.054 45.000 15.93 0.00 42.52 5.87
2816 5340 0.945813 TTTTGACCGGAAAACGCGAT 59.054 45.000 15.93 0.00 42.52 4.58
2817 5341 0.513820 TTTGACCGGAAAACGCGATC 59.486 50.000 15.93 8.03 42.52 3.69
2818 5342 1.619526 TTGACCGGAAAACGCGATCG 61.620 55.000 15.93 11.69 42.52 3.69
2819 5343 2.795389 GACCGGAAAACGCGATCGG 61.795 63.158 15.93 19.34 45.42 4.18
2820 5344 3.560278 CCGGAAAACGCGATCGGG 61.560 66.667 28.24 28.24 42.52 5.14
2821 5345 2.507547 CGGAAAACGCGATCGGGA 60.508 61.111 35.09 0.00 40.69 5.14
2822 5346 1.881252 CGGAAAACGCGATCGGGAT 60.881 57.895 35.09 23.12 40.69 3.85
2823 5347 1.641677 GGAAAACGCGATCGGGATG 59.358 57.895 35.09 0.00 40.69 3.51
2824 5348 1.641677 GAAAACGCGATCGGGATGG 59.358 57.895 35.09 0.00 40.69 3.51
2825 5349 1.078708 AAAACGCGATCGGGATGGT 60.079 52.632 35.09 14.84 40.69 3.55
2826 5350 1.087771 AAAACGCGATCGGGATGGTC 61.088 55.000 35.09 7.84 40.69 4.02
2827 5351 2.233605 AAACGCGATCGGGATGGTCA 62.234 55.000 35.09 0.00 40.69 4.02
2828 5352 2.028125 AACGCGATCGGGATGGTCAT 62.028 55.000 35.09 11.06 40.69 3.06
2829 5353 2.023771 CGCGATCGGGATGGTCATG 61.024 63.158 26.36 0.00 0.00 3.07
2830 5354 1.069765 GCGATCGGGATGGTCATGT 59.930 57.895 18.30 0.00 0.00 3.21
2831 5355 0.532862 GCGATCGGGATGGTCATGTT 60.533 55.000 18.30 0.00 0.00 2.71
2832 5356 1.502231 CGATCGGGATGGTCATGTTC 58.498 55.000 7.38 0.00 0.00 3.18
2833 5357 1.069204 CGATCGGGATGGTCATGTTCT 59.931 52.381 7.38 0.00 0.00 3.01
2834 5358 2.483714 CGATCGGGATGGTCATGTTCTT 60.484 50.000 7.38 0.00 0.00 2.52
2835 5359 3.545703 GATCGGGATGGTCATGTTCTTT 58.454 45.455 0.00 0.00 0.00 2.52
2836 5360 3.433306 TCGGGATGGTCATGTTCTTTT 57.567 42.857 0.00 0.00 0.00 2.27
2837 5361 3.343617 TCGGGATGGTCATGTTCTTTTC 58.656 45.455 0.00 0.00 0.00 2.29
2838 5362 3.009033 TCGGGATGGTCATGTTCTTTTCT 59.991 43.478 0.00 0.00 0.00 2.52
2839 5363 3.758554 CGGGATGGTCATGTTCTTTTCTT 59.241 43.478 0.00 0.00 0.00 2.52
2840 5364 4.379813 CGGGATGGTCATGTTCTTTTCTTG 60.380 45.833 0.00 0.00 0.00 3.02
2841 5365 4.766891 GGGATGGTCATGTTCTTTTCTTGA 59.233 41.667 0.00 0.00 0.00 3.02
2842 5366 5.105997 GGGATGGTCATGTTCTTTTCTTGAG 60.106 44.000 0.00 0.00 0.00 3.02
2843 5367 5.105997 GGATGGTCATGTTCTTTTCTTGAGG 60.106 44.000 0.00 0.00 0.00 3.86
2844 5368 4.144297 TGGTCATGTTCTTTTCTTGAGGG 58.856 43.478 0.00 0.00 0.00 4.30
2845 5369 3.507622 GGTCATGTTCTTTTCTTGAGGGG 59.492 47.826 0.00 0.00 0.00 4.79
2846 5370 4.398319 GTCATGTTCTTTTCTTGAGGGGA 58.602 43.478 0.00 0.00 0.00 4.81
2847 5371 4.827284 GTCATGTTCTTTTCTTGAGGGGAA 59.173 41.667 0.00 0.00 0.00 3.97
2848 5372 5.301805 GTCATGTTCTTTTCTTGAGGGGAAA 59.698 40.000 0.00 0.00 0.00 3.13
2849 5373 5.536161 TCATGTTCTTTTCTTGAGGGGAAAG 59.464 40.000 0.00 0.00 34.73 2.62
2850 5374 3.636764 TGTTCTTTTCTTGAGGGGAAAGC 59.363 43.478 0.00 0.00 34.73 3.51
2851 5375 3.884037 TCTTTTCTTGAGGGGAAAGCT 57.116 42.857 0.00 0.00 34.73 3.74
2852 5376 4.184649 TCTTTTCTTGAGGGGAAAGCTT 57.815 40.909 0.00 0.00 34.73 3.74
2853 5377 3.891366 TCTTTTCTTGAGGGGAAAGCTTG 59.109 43.478 0.00 0.00 34.73 4.01
2854 5378 1.620822 TTCTTGAGGGGAAAGCTTGC 58.379 50.000 0.00 0.00 0.00 4.01
2855 5379 0.478072 TCTTGAGGGGAAAGCTTGCA 59.522 50.000 6.80 0.00 0.00 4.08
2856 5380 1.133513 TCTTGAGGGGAAAGCTTGCAA 60.134 47.619 6.80 0.00 0.00 4.08
2857 5381 1.000171 CTTGAGGGGAAAGCTTGCAAC 60.000 52.381 6.80 0.00 0.00 4.17
2858 5382 1.172180 TGAGGGGAAAGCTTGCAACG 61.172 55.000 6.80 0.00 0.00 4.10
2859 5383 2.049156 GGGGAAAGCTTGCAACGC 60.049 61.111 6.80 11.48 0.00 4.84
2860 5384 2.429069 GGGAAAGCTTGCAACGCG 60.429 61.111 6.80 3.53 0.00 6.01
2861 5385 2.637025 GGAAAGCTTGCAACGCGA 59.363 55.556 15.93 0.00 0.00 5.87
2862 5386 1.210155 GGAAAGCTTGCAACGCGAT 59.790 52.632 15.93 0.00 0.00 4.58
2863 5387 0.387239 GGAAAGCTTGCAACGCGATT 60.387 50.000 15.93 0.00 0.00 3.34
2864 5388 1.135803 GGAAAGCTTGCAACGCGATTA 60.136 47.619 15.93 0.00 0.00 1.75
2865 5389 2.477863 GGAAAGCTTGCAACGCGATTAT 60.478 45.455 15.93 0.00 0.00 1.28
2866 5390 3.242608 GGAAAGCTTGCAACGCGATTATA 60.243 43.478 15.93 0.00 0.00 0.98
2867 5391 4.527564 GAAAGCTTGCAACGCGATTATAT 58.472 39.130 15.93 0.00 0.00 0.86
2868 5392 4.552166 AAGCTTGCAACGCGATTATATT 57.448 36.364 15.93 0.00 0.00 1.28
2869 5393 4.133856 AGCTTGCAACGCGATTATATTC 57.866 40.909 15.93 0.00 0.00 1.75
2870 5394 3.559655 AGCTTGCAACGCGATTATATTCA 59.440 39.130 15.93 0.00 0.00 2.57
2871 5395 4.214119 AGCTTGCAACGCGATTATATTCAT 59.786 37.500 15.93 0.00 0.00 2.57
2872 5396 5.408299 AGCTTGCAACGCGATTATATTCATA 59.592 36.000 15.93 0.00 0.00 2.15
2873 5397 6.092670 AGCTTGCAACGCGATTATATTCATAT 59.907 34.615 15.93 0.00 0.00 1.78
2874 5398 7.277760 AGCTTGCAACGCGATTATATTCATATA 59.722 33.333 15.93 0.00 0.00 0.86
2875 5399 8.064222 GCTTGCAACGCGATTATATTCATATAT 58.936 33.333 15.93 0.00 0.00 0.86
2952 5476 9.563748 TGTCATGCTTATCTCAATCATAAATGA 57.436 29.630 0.00 0.00 41.70 2.57
2954 5478 9.788889 TCATGCTTATCTCAATCATAAATGAGT 57.211 29.630 0.00 0.00 42.86 3.41
2957 5481 9.399797 TGCTTATCTCAATCATAAATGAGTTGT 57.600 29.630 0.00 0.00 42.86 3.32
2990 5514 9.906660 TCATATAAGAAAAACAAAGCATTCGTT 57.093 25.926 0.00 0.00 0.00 3.85
2993 5517 6.959671 AAGAAAAACAAAGCATTCGTTTGA 57.040 29.167 2.70 0.00 38.13 2.69
2994 5518 6.959671 AGAAAAACAAAGCATTCGTTTGAA 57.040 29.167 2.70 0.00 38.13 2.69
2995 5519 6.992766 AGAAAAACAAAGCATTCGTTTGAAG 58.007 32.000 2.70 0.00 38.13 3.02
2996 5520 6.811170 AGAAAAACAAAGCATTCGTTTGAAGA 59.189 30.769 2.70 0.00 38.13 2.87
2997 5521 6.573617 AAAACAAAGCATTCGTTTGAAGAG 57.426 33.333 2.70 0.00 38.13 2.85
2998 5522 4.900635 ACAAAGCATTCGTTTGAAGAGT 57.099 36.364 2.70 0.00 38.13 3.24
2999 5523 5.248870 ACAAAGCATTCGTTTGAAGAGTT 57.751 34.783 2.70 0.00 38.13 3.01
3000 5524 5.650543 ACAAAGCATTCGTTTGAAGAGTTT 58.349 33.333 2.70 0.00 38.13 2.66
3001 5525 6.099341 ACAAAGCATTCGTTTGAAGAGTTTT 58.901 32.000 2.70 0.00 38.13 2.43
3002 5526 6.034898 ACAAAGCATTCGTTTGAAGAGTTTTG 59.965 34.615 14.69 14.69 42.75 2.44
3003 5527 5.499139 AGCATTCGTTTGAAGAGTTTTGA 57.501 34.783 0.00 0.00 37.57 2.69
3004 5528 5.514279 AGCATTCGTTTGAAGAGTTTTGAG 58.486 37.500 0.00 0.00 37.57 3.02
3005 5529 5.066505 AGCATTCGTTTGAAGAGTTTTGAGT 59.933 36.000 0.00 0.00 37.57 3.41
3006 5530 5.172053 GCATTCGTTTGAAGAGTTTTGAGTG 59.828 40.000 0.00 0.00 37.57 3.51
3007 5531 5.873179 TTCGTTTGAAGAGTTTTGAGTGT 57.127 34.783 0.00 0.00 0.00 3.55
3008 5532 6.971527 TTCGTTTGAAGAGTTTTGAGTGTA 57.028 33.333 0.00 0.00 0.00 2.90
3009 5533 7.548196 TTCGTTTGAAGAGTTTTGAGTGTAT 57.452 32.000 0.00 0.00 0.00 2.29
3010 5534 6.943981 TCGTTTGAAGAGTTTTGAGTGTATG 58.056 36.000 0.00 0.00 0.00 2.39
3011 5535 5.621228 CGTTTGAAGAGTTTTGAGTGTATGC 59.379 40.000 0.00 0.00 0.00 3.14
3012 5536 6.511767 CGTTTGAAGAGTTTTGAGTGTATGCT 60.512 38.462 0.00 0.00 0.00 3.79
3013 5537 7.307160 CGTTTGAAGAGTTTTGAGTGTATGCTA 60.307 37.037 0.00 0.00 0.00 3.49
3014 5538 8.342634 GTTTGAAGAGTTTTGAGTGTATGCTAA 58.657 33.333 0.00 0.00 0.00 3.09
3015 5539 8.445275 TTGAAGAGTTTTGAGTGTATGCTAAA 57.555 30.769 0.00 0.00 0.00 1.85
3016 5540 8.445275 TGAAGAGTTTTGAGTGTATGCTAAAA 57.555 30.769 0.00 0.00 0.00 1.52
3017 5541 9.066892 TGAAGAGTTTTGAGTGTATGCTAAAAT 57.933 29.630 0.00 0.00 0.00 1.82
3018 5542 9.334693 GAAGAGTTTTGAGTGTATGCTAAAATG 57.665 33.333 0.00 0.00 0.00 2.32
3019 5543 8.396272 AGAGTTTTGAGTGTATGCTAAAATGT 57.604 30.769 0.00 0.00 0.00 2.71
3020 5544 9.502091 AGAGTTTTGAGTGTATGCTAAAATGTA 57.498 29.630 0.00 0.00 0.00 2.29
3027 5551 9.489084 TGAGTGTATGCTAAAATGTATATGGAC 57.511 33.333 0.00 0.00 0.00 4.02
3028 5552 9.712305 GAGTGTATGCTAAAATGTATATGGACT 57.288 33.333 0.00 0.00 0.00 3.85
3074 5598 8.907885 AGAAAAGGATAATGATTTTAGTCAGGC 58.092 33.333 0.00 0.00 0.00 4.85
3075 5599 6.867662 AAGGATAATGATTTTAGTCAGGCG 57.132 37.500 0.00 0.00 0.00 5.52
3076 5600 6.174720 AGGATAATGATTTTAGTCAGGCGA 57.825 37.500 0.00 0.00 0.00 5.54
3077 5601 5.992217 AGGATAATGATTTTAGTCAGGCGAC 59.008 40.000 0.00 1.99 42.95 5.19
3078 5602 5.179555 GGATAATGATTTTAGTCAGGCGACC 59.820 44.000 5.98 0.00 43.73 4.79
3079 5603 2.396590 TGATTTTAGTCAGGCGACCC 57.603 50.000 5.98 0.00 43.73 4.46
3080 5604 1.287425 GATTTTAGTCAGGCGACCCG 58.713 55.000 5.98 0.00 43.73 5.28
3097 5621 3.276846 GCAACTGCGTTCACCCGT 61.277 61.111 0.00 0.00 0.00 5.28
3098 5622 2.935955 CAACTGCGTTCACCCGTC 59.064 61.111 0.00 0.00 0.00 4.79
3099 5623 2.660552 AACTGCGTTCACCCGTCG 60.661 61.111 0.00 0.00 0.00 5.12
3105 5629 3.692406 GTTCACCCGTCGCCTCCT 61.692 66.667 0.00 0.00 0.00 3.69
3106 5630 2.036098 TTCACCCGTCGCCTCCTA 59.964 61.111 0.00 0.00 0.00 2.94
3107 5631 2.345760 TTCACCCGTCGCCTCCTAC 61.346 63.158 0.00 0.00 0.00 3.18
3108 5632 2.754658 CACCCGTCGCCTCCTACT 60.755 66.667 0.00 0.00 0.00 2.57
3109 5633 2.439883 ACCCGTCGCCTCCTACTC 60.440 66.667 0.00 0.00 0.00 2.59
3110 5634 3.217743 CCCGTCGCCTCCTACTCC 61.218 72.222 0.00 0.00 0.00 3.85
3111 5635 3.217743 CCGTCGCCTCCTACTCCC 61.218 72.222 0.00 0.00 0.00 4.30
3112 5636 3.217743 CGTCGCCTCCTACTCCCC 61.218 72.222 0.00 0.00 0.00 4.81
3113 5637 2.838693 GTCGCCTCCTACTCCCCC 60.839 72.222 0.00 0.00 0.00 5.40
3128 5652 3.485214 CCCCCTCCCTCTCCTTATC 57.515 63.158 0.00 0.00 0.00 1.75
3129 5653 0.178888 CCCCCTCCCTCTCCTTATCC 60.179 65.000 0.00 0.00 0.00 2.59
3130 5654 0.178888 CCCCTCCCTCTCCTTATCCC 60.179 65.000 0.00 0.00 0.00 3.85
3131 5655 0.178888 CCCTCCCTCTCCTTATCCCC 60.179 65.000 0.00 0.00 0.00 4.81
3132 5656 0.871024 CCTCCCTCTCCTTATCCCCT 59.129 60.000 0.00 0.00 0.00 4.79
3133 5657 1.224381 CCTCCCTCTCCTTATCCCCTT 59.776 57.143 0.00 0.00 0.00 3.95
3134 5658 2.615391 CTCCCTCTCCTTATCCCCTTC 58.385 57.143 0.00 0.00 0.00 3.46
3135 5659 1.223337 TCCCTCTCCTTATCCCCTTCC 59.777 57.143 0.00 0.00 0.00 3.46
3136 5660 1.735926 CCTCTCCTTATCCCCTTCCC 58.264 60.000 0.00 0.00 0.00 3.97
3137 5661 1.343069 CTCTCCTTATCCCCTTCCCG 58.657 60.000 0.00 0.00 0.00 5.14
3138 5662 0.640495 TCTCCTTATCCCCTTCCCGT 59.360 55.000 0.00 0.00 0.00 5.28
3139 5663 0.759346 CTCCTTATCCCCTTCCCGTG 59.241 60.000 0.00 0.00 0.00 4.94
3140 5664 0.693092 TCCTTATCCCCTTCCCGTGG 60.693 60.000 0.00 0.00 0.00 4.94
3141 5665 1.148498 CTTATCCCCTTCCCGTGGC 59.852 63.158 0.00 0.00 0.00 5.01
3142 5666 1.307517 TTATCCCCTTCCCGTGGCT 60.308 57.895 0.00 0.00 0.00 4.75
3143 5667 0.917333 TTATCCCCTTCCCGTGGCTT 60.917 55.000 0.00 0.00 0.00 4.35
3144 5668 1.342672 TATCCCCTTCCCGTGGCTTC 61.343 60.000 0.00 0.00 0.00 3.86
3145 5669 4.426313 CCCCTTCCCGTGGCTTCC 62.426 72.222 0.00 0.00 0.00 3.46
3146 5670 4.778143 CCCTTCCCGTGGCTTCCG 62.778 72.222 0.00 0.00 0.00 4.30
3147 5671 3.702048 CCTTCCCGTGGCTTCCGA 61.702 66.667 0.00 0.00 0.00 4.55
3148 5672 2.584608 CTTCCCGTGGCTTCCGAT 59.415 61.111 0.00 0.00 0.00 4.18
3149 5673 1.078426 CTTCCCGTGGCTTCCGATT 60.078 57.895 0.00 0.00 0.00 3.34
3150 5674 1.078708 TTCCCGTGGCTTCCGATTC 60.079 57.895 0.00 0.00 0.00 2.52
3151 5675 1.832719 TTCCCGTGGCTTCCGATTCA 61.833 55.000 0.00 0.00 0.00 2.57
3152 5676 2.106683 CCCGTGGCTTCCGATTCAC 61.107 63.158 0.00 0.00 0.00 3.18
3153 5677 1.079127 CCGTGGCTTCCGATTCACT 60.079 57.895 0.00 0.00 0.00 3.41
3154 5678 1.084370 CCGTGGCTTCCGATTCACTC 61.084 60.000 0.00 0.00 0.00 3.51
3155 5679 0.389817 CGTGGCTTCCGATTCACTCA 60.390 55.000 0.00 0.00 0.00 3.41
3156 5680 1.740380 CGTGGCTTCCGATTCACTCAT 60.740 52.381 0.00 0.00 0.00 2.90
3157 5681 1.936547 GTGGCTTCCGATTCACTCATC 59.063 52.381 0.00 0.00 0.00 2.92
3158 5682 1.134401 TGGCTTCCGATTCACTCATCC 60.134 52.381 0.00 0.00 0.00 3.51
3159 5683 1.139853 GGCTTCCGATTCACTCATCCT 59.860 52.381 0.00 0.00 0.00 3.24
3160 5684 2.208431 GCTTCCGATTCACTCATCCTG 58.792 52.381 0.00 0.00 0.00 3.86
3161 5685 2.208431 CTTCCGATTCACTCATCCTGC 58.792 52.381 0.00 0.00 0.00 4.85
3162 5686 0.103026 TCCGATTCACTCATCCTGCG 59.897 55.000 0.00 0.00 0.00 5.18
3163 5687 1.493950 CCGATTCACTCATCCTGCGC 61.494 60.000 0.00 0.00 0.00 6.09
3164 5688 0.529337 CGATTCACTCATCCTGCGCT 60.529 55.000 9.73 0.00 0.00 5.92
3165 5689 0.935898 GATTCACTCATCCTGCGCTG 59.064 55.000 9.73 8.47 0.00 5.18
3166 5690 1.094073 ATTCACTCATCCTGCGCTGC 61.094 55.000 9.73 0.00 0.00 5.25
3167 5691 3.200593 CACTCATCCTGCGCTGCC 61.201 66.667 9.73 0.00 0.00 4.85
3168 5692 3.397439 ACTCATCCTGCGCTGCCT 61.397 61.111 9.73 0.00 0.00 4.75
3169 5693 2.588314 CTCATCCTGCGCTGCCTC 60.588 66.667 9.73 0.00 0.00 4.70
3170 5694 4.519437 TCATCCTGCGCTGCCTCG 62.519 66.667 9.73 0.00 0.00 4.63
3178 5702 4.218578 CGCTGCCTCGCCTCATCT 62.219 66.667 0.00 0.00 0.00 2.90
3179 5703 2.849964 CGCTGCCTCGCCTCATCTA 61.850 63.158 0.00 0.00 0.00 1.98
3180 5704 1.670590 GCTGCCTCGCCTCATCTAT 59.329 57.895 0.00 0.00 0.00 1.98
3181 5705 0.389687 GCTGCCTCGCCTCATCTATC 60.390 60.000 0.00 0.00 0.00 2.08
3182 5706 0.109365 CTGCCTCGCCTCATCTATCG 60.109 60.000 0.00 0.00 0.00 2.92
3183 5707 0.537371 TGCCTCGCCTCATCTATCGA 60.537 55.000 0.00 0.00 0.00 3.59
3184 5708 0.598562 GCCTCGCCTCATCTATCGAA 59.401 55.000 0.00 0.00 0.00 3.71
3185 5709 1.000163 GCCTCGCCTCATCTATCGAAA 60.000 52.381 0.00 0.00 0.00 3.46
3186 5710 2.545952 GCCTCGCCTCATCTATCGAAAA 60.546 50.000 0.00 0.00 0.00 2.29
3187 5711 3.717707 CCTCGCCTCATCTATCGAAAAA 58.282 45.455 0.00 0.00 0.00 1.94
3188 5712 3.738282 CCTCGCCTCATCTATCGAAAAAG 59.262 47.826 0.00 0.00 0.00 2.27
3189 5713 4.499865 CCTCGCCTCATCTATCGAAAAAGA 60.500 45.833 0.00 0.00 0.00 2.52
3190 5714 5.201713 TCGCCTCATCTATCGAAAAAGAT 57.798 39.130 0.00 0.00 32.63 2.40
3191 5715 5.601662 TCGCCTCATCTATCGAAAAAGATT 58.398 37.500 5.76 0.00 29.93 2.40
3192 5716 6.049149 TCGCCTCATCTATCGAAAAAGATTT 58.951 36.000 5.76 0.00 29.93 2.17
3193 5717 6.538742 TCGCCTCATCTATCGAAAAAGATTTT 59.461 34.615 5.76 0.00 29.93 1.82
3194 5718 6.848296 CGCCTCATCTATCGAAAAAGATTTTC 59.152 38.462 5.76 5.67 29.93 2.29
3200 5724 1.613270 CGAAAAAGATTTTCGCCCCG 58.387 50.000 20.59 2.99 43.52 5.73
3201 5725 1.346365 GAAAAAGATTTTCGCCCCGC 58.654 50.000 0.33 0.00 0.00 6.13
3202 5726 0.966179 AAAAAGATTTTCGCCCCGCT 59.034 45.000 0.00 0.00 0.00 5.52
3203 5727 0.966179 AAAAGATTTTCGCCCCGCTT 59.034 45.000 0.00 0.00 0.00 4.68
3204 5728 0.966179 AAAGATTTTCGCCCCGCTTT 59.034 45.000 0.00 0.00 0.00 3.51
3205 5729 1.828979 AAGATTTTCGCCCCGCTTTA 58.171 45.000 0.00 0.00 0.00 1.85
3206 5730 2.052782 AGATTTTCGCCCCGCTTTAT 57.947 45.000 0.00 0.00 0.00 1.40
3207 5731 3.202829 AGATTTTCGCCCCGCTTTATA 57.797 42.857 0.00 0.00 0.00 0.98
3208 5732 3.751518 AGATTTTCGCCCCGCTTTATAT 58.248 40.909 0.00 0.00 0.00 0.86
3209 5733 3.502211 AGATTTTCGCCCCGCTTTATATG 59.498 43.478 0.00 0.00 0.00 1.78
3210 5734 2.335316 TTTCGCCCCGCTTTATATGT 57.665 45.000 0.00 0.00 0.00 2.29
3211 5735 3.472283 TTTCGCCCCGCTTTATATGTA 57.528 42.857 0.00 0.00 0.00 2.29
3212 5736 3.472283 TTCGCCCCGCTTTATATGTAA 57.528 42.857 0.00 0.00 0.00 2.41
3213 5737 3.472283 TCGCCCCGCTTTATATGTAAA 57.528 42.857 0.00 0.00 0.00 2.01
3214 5738 3.395639 TCGCCCCGCTTTATATGTAAAG 58.604 45.455 15.53 15.53 46.20 1.85
3231 5755 9.716507 ATATGTAAAGCAACGATTATCAACAAC 57.283 29.630 0.00 0.00 0.00 3.32
3232 5756 6.375377 TGTAAAGCAACGATTATCAACAACC 58.625 36.000 0.00 0.00 0.00 3.77
3233 5757 5.705609 AAAGCAACGATTATCAACAACCT 57.294 34.783 0.00 0.00 0.00 3.50
3234 5758 4.685169 AGCAACGATTATCAACAACCTG 57.315 40.909 0.00 0.00 0.00 4.00
3235 5759 4.323417 AGCAACGATTATCAACAACCTGA 58.677 39.130 0.00 0.00 0.00 3.86
3236 5760 4.943705 AGCAACGATTATCAACAACCTGAT 59.056 37.500 0.00 0.00 39.41 2.90
3237 5761 6.112734 AGCAACGATTATCAACAACCTGATA 58.887 36.000 0.00 0.00 37.27 2.15
3238 5762 6.037172 AGCAACGATTATCAACAACCTGATAC 59.963 38.462 0.00 0.00 37.89 2.24
3239 5763 6.183360 GCAACGATTATCAACAACCTGATACA 60.183 38.462 0.00 0.00 37.89 2.29
3240 5764 7.625395 GCAACGATTATCAACAACCTGATACAA 60.625 37.037 0.00 0.00 37.89 2.41
3241 5765 7.915293 ACGATTATCAACAACCTGATACAAA 57.085 32.000 0.00 0.00 37.89 2.83
3242 5766 7.748847 ACGATTATCAACAACCTGATACAAAC 58.251 34.615 0.00 0.00 37.89 2.93
3243 5767 7.389330 ACGATTATCAACAACCTGATACAAACA 59.611 33.333 0.00 0.00 37.89 2.83
3244 5768 7.692291 CGATTATCAACAACCTGATACAAACAC 59.308 37.037 0.00 0.00 37.89 3.32
3245 5769 7.809546 TTATCAACAACCTGATACAAACACA 57.190 32.000 0.00 0.00 37.89 3.72
3246 5770 5.493133 TCAACAACCTGATACAAACACAC 57.507 39.130 0.00 0.00 0.00 3.82
3247 5771 4.034626 TCAACAACCTGATACAAACACACG 59.965 41.667 0.00 0.00 0.00 4.49
3248 5772 2.289547 ACAACCTGATACAAACACACGC 59.710 45.455 0.00 0.00 0.00 5.34
3249 5773 1.519408 ACCTGATACAAACACACGCC 58.481 50.000 0.00 0.00 0.00 5.68
3250 5774 1.202710 ACCTGATACAAACACACGCCA 60.203 47.619 0.00 0.00 0.00 5.69
3251 5775 1.196808 CCTGATACAAACACACGCCAC 59.803 52.381 0.00 0.00 0.00 5.01
3252 5776 1.196808 CTGATACAAACACACGCCACC 59.803 52.381 0.00 0.00 0.00 4.61
3253 5777 1.231221 GATACAAACACACGCCACCA 58.769 50.000 0.00 0.00 0.00 4.17
3254 5778 0.948678 ATACAAACACACGCCACCAC 59.051 50.000 0.00 0.00 0.00 4.16
3255 5779 0.392595 TACAAACACACGCCACCACA 60.393 50.000 0.00 0.00 0.00 4.17
3256 5780 1.244697 ACAAACACACGCCACCACAA 61.245 50.000 0.00 0.00 0.00 3.33
3257 5781 0.800300 CAAACACACGCCACCACAAC 60.800 55.000 0.00 0.00 0.00 3.32
3258 5782 1.244697 AAACACACGCCACCACAACA 61.245 50.000 0.00 0.00 0.00 3.33
3259 5783 1.928706 AACACACGCCACCACAACAC 61.929 55.000 0.00 0.00 0.00 3.32
3260 5784 2.045829 ACACGCCACCACAACACA 60.046 55.556 0.00 0.00 0.00 3.72
3261 5785 2.403378 ACACGCCACCACAACACAC 61.403 57.895 0.00 0.00 0.00 3.82
3262 5786 3.199190 ACGCCACCACAACACACG 61.199 61.111 0.00 0.00 0.00 4.49
3263 5787 4.605967 CGCCACCACAACACACGC 62.606 66.667 0.00 0.00 0.00 5.34
3264 5788 3.513438 GCCACCACAACACACGCA 61.513 61.111 0.00 0.00 0.00 5.24
3265 5789 2.407210 CCACCACAACACACGCAC 59.593 61.111 0.00 0.00 0.00 5.34
3266 5790 2.402572 CCACCACAACACACGCACA 61.403 57.895 0.00 0.00 0.00 4.57
3267 5791 1.226267 CACCACAACACACGCACAC 60.226 57.895 0.00 0.00 0.00 3.82
3268 5792 1.672682 ACCACAACACACGCACACA 60.673 52.632 0.00 0.00 0.00 3.72
3269 5793 1.029408 ACCACAACACACGCACACAT 61.029 50.000 0.00 0.00 0.00 3.21
3270 5794 0.316937 CCACAACACACGCACACATC 60.317 55.000 0.00 0.00 0.00 3.06
3271 5795 0.316937 CACAACACACGCACACATCC 60.317 55.000 0.00 0.00 0.00 3.51
3272 5796 0.746204 ACAACACACGCACACATCCA 60.746 50.000 0.00 0.00 0.00 3.41
3273 5797 0.380024 CAACACACGCACACATCCAA 59.620 50.000 0.00 0.00 0.00 3.53
3274 5798 0.662619 AACACACGCACACATCCAAG 59.337 50.000 0.00 0.00 0.00 3.61
3275 5799 1.081906 CACACGCACACATCCAAGC 60.082 57.895 0.00 0.00 0.00 4.01
3276 5800 1.525765 ACACGCACACATCCAAGCA 60.526 52.632 0.00 0.00 0.00 3.91
3277 5801 1.208358 CACGCACACATCCAAGCAG 59.792 57.895 0.00 0.00 0.00 4.24
3278 5802 1.071299 ACGCACACATCCAAGCAGA 59.929 52.632 0.00 0.00 0.00 4.26
3279 5803 0.952497 ACGCACACATCCAAGCAGAG 60.952 55.000 0.00 0.00 0.00 3.35
3280 5804 0.671472 CGCACACATCCAAGCAGAGA 60.671 55.000 0.00 0.00 0.00 3.10
3281 5805 1.747709 GCACACATCCAAGCAGAGAT 58.252 50.000 0.00 0.00 0.00 2.75
3282 5806 1.400846 GCACACATCCAAGCAGAGATG 59.599 52.381 7.96 7.96 44.44 2.90
3283 5807 2.938314 GCACACATCCAAGCAGAGATGA 60.938 50.000 14.51 0.00 42.04 2.92
3284 5808 3.340928 CACACATCCAAGCAGAGATGAA 58.659 45.455 14.51 0.00 42.04 2.57
3285 5809 3.374367 CACACATCCAAGCAGAGATGAAG 59.626 47.826 14.51 9.73 42.04 3.02
3286 5810 2.355132 CACATCCAAGCAGAGATGAAGC 59.645 50.000 14.51 0.00 42.04 3.86
3287 5811 2.239150 ACATCCAAGCAGAGATGAAGCT 59.761 45.455 14.51 0.00 42.04 3.74
3288 5812 3.453717 ACATCCAAGCAGAGATGAAGCTA 59.546 43.478 14.51 0.00 42.04 3.32
3609 6133 9.474313 AGAACTCATGTATGCCCTAAAAATAAA 57.526 29.630 0.00 0.00 0.00 1.40
3610 6134 9.736023 GAACTCATGTATGCCCTAAAAATAAAG 57.264 33.333 0.00 0.00 0.00 1.85
3611 6135 8.823220 ACTCATGTATGCCCTAAAAATAAAGT 57.177 30.769 0.00 0.00 0.00 2.66
3612 6136 9.914834 ACTCATGTATGCCCTAAAAATAAAGTA 57.085 29.630 0.00 0.00 0.00 2.24
3614 6138 8.846211 TCATGTATGCCCTAAAAATAAAGTAGC 58.154 33.333 0.00 0.00 0.00 3.58
3615 6139 8.629158 CATGTATGCCCTAAAAATAAAGTAGCA 58.371 33.333 0.00 0.00 0.00 3.49
3616 6140 8.582657 TGTATGCCCTAAAAATAAAGTAGCAA 57.417 30.769 0.00 0.00 0.00 3.91
3617 6141 9.196139 TGTATGCCCTAAAAATAAAGTAGCAAT 57.804 29.630 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
267 268 2.144450 ACTGGGAGAAAAGGGAAGGTT 58.856 47.619 0.00 0.00 0.00 3.50
365 374 0.038599 TGCCACATTCATCTGCACCT 59.961 50.000 0.00 0.00 0.00 4.00
367 376 3.708195 GTGCCACATTCATCTGCAC 57.292 52.632 0.00 0.00 44.53 4.57
368 377 1.170442 CTGTGCCACATTCATCTGCA 58.830 50.000 0.00 0.00 0.00 4.41
370 379 4.421058 CATTTCTGTGCCACATTCATCTG 58.579 43.478 0.00 0.00 0.00 2.90
371 380 3.446161 CCATTTCTGTGCCACATTCATCT 59.554 43.478 0.00 0.00 0.00 2.90
372 381 3.429822 CCCATTTCTGTGCCACATTCATC 60.430 47.826 0.00 0.00 0.00 2.92
373 382 2.498481 CCCATTTCTGTGCCACATTCAT 59.502 45.455 0.00 0.00 0.00 2.57
520 538 7.696755 AGAAAACATTCAATTTGGTTGCTTTC 58.303 30.769 14.11 14.11 37.74 2.62
560 578 3.637769 AGCCTTCTTTGTTGGTTAACCA 58.362 40.909 23.69 23.69 45.94 3.67
568 586 2.861935 CAGTTGCAAGCCTTCTTTGTTG 59.138 45.455 0.00 0.00 0.00 3.33
654 672 2.538939 GGGAACGATTTTATCTGTGCGC 60.539 50.000 0.00 0.00 0.00 6.09
656 674 3.689649 AGTGGGAACGATTTTATCTGTGC 59.310 43.478 0.00 0.00 0.00 4.57
657 675 5.880054 AAGTGGGAACGATTTTATCTGTG 57.120 39.130 0.00 0.00 0.00 3.66
684 703 9.213799 GCTTATGAAATTTATGGTGGTGAAAAA 57.786 29.630 0.00 0.00 0.00 1.94
754 773 9.230122 TCAGCTTATGATAAACTTTTGACATGA 57.770 29.630 0.00 0.00 31.12 3.07
880 906 8.983789 TGTTGGACATGTATAACCTGATTAGTA 58.016 33.333 17.30 0.00 0.00 1.82
1077 1103 4.291783 TGTAACGTTTATTTTGTGGCTGC 58.708 39.130 5.91 0.00 0.00 5.25
1255 1281 2.665185 GCGAACCGGTTCAGCACT 60.665 61.111 36.71 14.43 39.46 4.40
1286 1312 2.259618 GTAGCGCGAGAAATTCAGTGA 58.740 47.619 12.10 0.00 0.00 3.41
1298 1324 3.507103 TGTTACCTAAATGTAGCGCGA 57.493 42.857 12.10 0.00 0.00 5.87
1328 1354 9.823647 ATAGTTTCTGTTGATTCATGGTAGTAG 57.176 33.333 0.00 0.00 0.00 2.57
1418 1444 7.189087 AGGTTGGTTCCATCCTAATTGTAATT 58.811 34.615 17.01 0.00 35.19 1.40
2608 2636 2.064242 AAACTTCCTCCACACCCCCG 62.064 60.000 0.00 0.00 0.00 5.73
2611 2670 1.897560 CTGAAACTTCCTCCACACCC 58.102 55.000 0.00 0.00 0.00 4.61
2641 2701 2.807045 CGCTGGAGTGCACGAGAC 60.807 66.667 12.01 3.70 0.00 3.36
2642 2702 4.056125 CCGCTGGAGTGCACGAGA 62.056 66.667 12.01 0.00 0.00 4.04
2665 5188 2.663196 CCAGGTCTCCGTTCACCC 59.337 66.667 0.00 0.00 32.45 4.61
2675 5198 1.072159 GTGCTCACTTGCCAGGTCT 59.928 57.895 0.00 0.00 0.00 3.85
2798 5322 0.513820 GATCGCGTTTTCCGGTCAAA 59.486 50.000 5.77 0.00 35.96 2.69
2810 5334 2.498941 ATGACCATCCCGATCGCGT 61.499 57.895 10.32 0.00 35.23 6.01
2811 5335 2.023771 CATGACCATCCCGATCGCG 61.024 63.158 10.32 0.00 37.24 5.87
2812 5336 0.532862 AACATGACCATCCCGATCGC 60.533 55.000 10.32 0.00 0.00 4.58
2813 5337 1.069204 AGAACATGACCATCCCGATCG 59.931 52.381 8.51 8.51 0.00 3.69
2814 5338 2.918712 AGAACATGACCATCCCGATC 57.081 50.000 0.00 0.00 0.00 3.69
2815 5339 3.652057 AAAGAACATGACCATCCCGAT 57.348 42.857 0.00 0.00 0.00 4.18
2816 5340 3.009033 AGAAAAGAACATGACCATCCCGA 59.991 43.478 0.00 0.00 0.00 5.14
2817 5341 3.347216 AGAAAAGAACATGACCATCCCG 58.653 45.455 0.00 0.00 0.00 5.14
2818 5342 4.766891 TCAAGAAAAGAACATGACCATCCC 59.233 41.667 0.00 0.00 0.00 3.85
2819 5343 5.105997 CCTCAAGAAAAGAACATGACCATCC 60.106 44.000 0.00 0.00 0.00 3.51
2820 5344 5.105997 CCCTCAAGAAAAGAACATGACCATC 60.106 44.000 0.00 0.00 0.00 3.51
2821 5345 4.768968 CCCTCAAGAAAAGAACATGACCAT 59.231 41.667 0.00 0.00 0.00 3.55
2822 5346 4.144297 CCCTCAAGAAAAGAACATGACCA 58.856 43.478 0.00 0.00 0.00 4.02
2823 5347 3.507622 CCCCTCAAGAAAAGAACATGACC 59.492 47.826 0.00 0.00 0.00 4.02
2824 5348 4.398319 TCCCCTCAAGAAAAGAACATGAC 58.602 43.478 0.00 0.00 0.00 3.06
2825 5349 4.722526 TCCCCTCAAGAAAAGAACATGA 57.277 40.909 0.00 0.00 0.00 3.07
2826 5350 5.776744 CTTTCCCCTCAAGAAAAGAACATG 58.223 41.667 0.00 0.00 33.06 3.21
2827 5351 4.281941 GCTTTCCCCTCAAGAAAAGAACAT 59.718 41.667 0.00 0.00 33.06 2.71
2828 5352 3.636764 GCTTTCCCCTCAAGAAAAGAACA 59.363 43.478 0.00 0.00 33.06 3.18
2829 5353 3.891977 AGCTTTCCCCTCAAGAAAAGAAC 59.108 43.478 0.00 0.00 33.06 3.01
2830 5354 4.184649 AGCTTTCCCCTCAAGAAAAGAA 57.815 40.909 0.00 0.00 33.06 2.52
2831 5355 3.884037 AGCTTTCCCCTCAAGAAAAGA 57.116 42.857 0.00 0.00 33.06 2.52
2832 5356 3.553715 GCAAGCTTTCCCCTCAAGAAAAG 60.554 47.826 0.00 0.00 33.06 2.27
2833 5357 2.365293 GCAAGCTTTCCCCTCAAGAAAA 59.635 45.455 0.00 0.00 33.06 2.29
2834 5358 1.963515 GCAAGCTTTCCCCTCAAGAAA 59.036 47.619 0.00 0.00 0.00 2.52
2835 5359 1.133513 TGCAAGCTTTCCCCTCAAGAA 60.134 47.619 0.00 0.00 0.00 2.52
2836 5360 0.478072 TGCAAGCTTTCCCCTCAAGA 59.522 50.000 0.00 0.00 0.00 3.02
2837 5361 1.000171 GTTGCAAGCTTTCCCCTCAAG 60.000 52.381 0.00 0.00 0.00 3.02
2838 5362 1.039856 GTTGCAAGCTTTCCCCTCAA 58.960 50.000 0.00 0.00 0.00 3.02
2839 5363 1.172180 CGTTGCAAGCTTTCCCCTCA 61.172 55.000 0.00 0.00 0.00 3.86
2840 5364 1.581447 CGTTGCAAGCTTTCCCCTC 59.419 57.895 0.00 0.00 0.00 4.30
2841 5365 2.564721 GCGTTGCAAGCTTTCCCCT 61.565 57.895 0.00 0.00 0.00 4.79
2842 5366 2.049156 GCGTTGCAAGCTTTCCCC 60.049 61.111 0.00 0.00 0.00 4.81
2843 5367 2.200170 ATCGCGTTGCAAGCTTTCCC 62.200 55.000 5.77 0.00 0.00 3.97
2844 5368 0.387239 AATCGCGTTGCAAGCTTTCC 60.387 50.000 5.77 0.00 0.00 3.13
2845 5369 2.241259 TAATCGCGTTGCAAGCTTTC 57.759 45.000 5.77 0.00 0.00 2.62
2846 5370 2.919666 ATAATCGCGTTGCAAGCTTT 57.080 40.000 5.77 5.48 0.00 3.51
2847 5371 4.035091 TGAATATAATCGCGTTGCAAGCTT 59.965 37.500 5.77 0.00 0.00 3.74
2848 5372 3.559655 TGAATATAATCGCGTTGCAAGCT 59.440 39.130 5.77 0.00 0.00 3.74
2849 5373 3.872354 TGAATATAATCGCGTTGCAAGC 58.128 40.909 5.77 5.03 0.00 4.01
2926 5450 9.563748 TCATTTATGATTGAGATAAGCATGACA 57.436 29.630 0.00 0.00 0.00 3.58
2928 5452 9.788889 ACTCATTTATGATTGAGATAAGCATGA 57.211 29.630 14.29 0.00 41.53 3.07
2931 5455 9.399797 ACAACTCATTTATGATTGAGATAAGCA 57.600 29.630 14.29 0.00 41.53 3.91
2964 5488 9.906660 AACGAATGCTTTGTTTTTCTTATATGA 57.093 25.926 0.00 0.00 33.51 2.15
2967 5491 9.737427 TCAAACGAATGCTTTGTTTTTCTTATA 57.263 25.926 9.99 0.00 43.03 0.98
2968 5492 8.641499 TCAAACGAATGCTTTGTTTTTCTTAT 57.359 26.923 9.99 0.00 43.03 1.73
2969 5493 8.467402 TTCAAACGAATGCTTTGTTTTTCTTA 57.533 26.923 9.99 0.00 43.03 2.10
2970 5494 6.959671 TCAAACGAATGCTTTGTTTTTCTT 57.040 29.167 9.99 0.00 43.03 2.52
2971 5495 6.811170 TCTTCAAACGAATGCTTTGTTTTTCT 59.189 30.769 9.99 0.00 43.03 2.52
2972 5496 6.988329 TCTTCAAACGAATGCTTTGTTTTTC 58.012 32.000 9.99 0.00 43.03 2.29
2973 5497 6.589907 ACTCTTCAAACGAATGCTTTGTTTTT 59.410 30.769 9.99 0.00 43.03 1.94
2974 5498 6.099341 ACTCTTCAAACGAATGCTTTGTTTT 58.901 32.000 9.99 0.00 43.03 2.43
2975 5499 5.650543 ACTCTTCAAACGAATGCTTTGTTT 58.349 33.333 7.87 7.87 45.69 2.83
2976 5500 5.248870 ACTCTTCAAACGAATGCTTTGTT 57.751 34.783 0.00 0.00 38.90 2.83
2977 5501 4.900635 ACTCTTCAAACGAATGCTTTGT 57.099 36.364 0.00 0.00 31.63 2.83
2978 5502 6.253298 TCAAAACTCTTCAAACGAATGCTTTG 59.747 34.615 0.00 0.00 0.00 2.77
2979 5503 6.329496 TCAAAACTCTTCAAACGAATGCTTT 58.671 32.000 0.00 0.00 0.00 3.51
2980 5504 5.890334 TCAAAACTCTTCAAACGAATGCTT 58.110 33.333 0.00 0.00 0.00 3.91
2981 5505 5.066505 ACTCAAAACTCTTCAAACGAATGCT 59.933 36.000 0.00 0.00 0.00 3.79
2982 5506 5.172053 CACTCAAAACTCTTCAAACGAATGC 59.828 40.000 0.00 0.00 0.00 3.56
2983 5507 6.258160 ACACTCAAAACTCTTCAAACGAATG 58.742 36.000 0.00 0.00 0.00 2.67
2984 5508 6.436843 ACACTCAAAACTCTTCAAACGAAT 57.563 33.333 0.00 0.00 0.00 3.34
2985 5509 5.873179 ACACTCAAAACTCTTCAAACGAA 57.127 34.783 0.00 0.00 0.00 3.85
2986 5510 6.511121 GCATACACTCAAAACTCTTCAAACGA 60.511 38.462 0.00 0.00 0.00 3.85
2987 5511 5.621228 GCATACACTCAAAACTCTTCAAACG 59.379 40.000 0.00 0.00 0.00 3.60
2988 5512 6.729187 AGCATACACTCAAAACTCTTCAAAC 58.271 36.000 0.00 0.00 0.00 2.93
2989 5513 6.942532 AGCATACACTCAAAACTCTTCAAA 57.057 33.333 0.00 0.00 0.00 2.69
2990 5514 8.445275 TTTAGCATACACTCAAAACTCTTCAA 57.555 30.769 0.00 0.00 0.00 2.69
2991 5515 8.445275 TTTTAGCATACACTCAAAACTCTTCA 57.555 30.769 0.00 0.00 0.00 3.02
2992 5516 9.334693 CATTTTAGCATACACTCAAAACTCTTC 57.665 33.333 0.00 0.00 0.00 2.87
2993 5517 8.850156 ACATTTTAGCATACACTCAAAACTCTT 58.150 29.630 0.00 0.00 0.00 2.85
2994 5518 8.396272 ACATTTTAGCATACACTCAAAACTCT 57.604 30.769 0.00 0.00 0.00 3.24
3001 5525 9.489084 GTCCATATACATTTTAGCATACACTCA 57.511 33.333 0.00 0.00 0.00 3.41
3002 5526 9.712305 AGTCCATATACATTTTAGCATACACTC 57.288 33.333 0.00 0.00 0.00 3.51
3048 5572 8.907885 GCCTGACTAAAATCATTATCCTTTTCT 58.092 33.333 0.00 0.00 0.00 2.52
3049 5573 7.857885 CGCCTGACTAAAATCATTATCCTTTTC 59.142 37.037 0.00 0.00 0.00 2.29
3050 5574 7.556275 TCGCCTGACTAAAATCATTATCCTTTT 59.444 33.333 0.00 0.00 0.00 2.27
3051 5575 7.012421 GTCGCCTGACTAAAATCATTATCCTTT 59.988 37.037 0.00 0.00 42.08 3.11
3052 5576 6.483640 GTCGCCTGACTAAAATCATTATCCTT 59.516 38.462 0.00 0.00 42.08 3.36
3053 5577 5.992217 GTCGCCTGACTAAAATCATTATCCT 59.008 40.000 0.00 0.00 42.08 3.24
3054 5578 5.179555 GGTCGCCTGACTAAAATCATTATCC 59.820 44.000 0.00 0.00 44.83 2.59
3055 5579 5.179555 GGGTCGCCTGACTAAAATCATTATC 59.820 44.000 0.00 0.00 44.83 1.75
3056 5580 5.063880 GGGTCGCCTGACTAAAATCATTAT 58.936 41.667 0.00 0.00 44.83 1.28
3057 5581 4.448210 GGGTCGCCTGACTAAAATCATTA 58.552 43.478 0.00 0.00 44.83 1.90
3058 5582 3.279434 GGGTCGCCTGACTAAAATCATT 58.721 45.455 0.00 0.00 44.83 2.57
3059 5583 2.741878 CGGGTCGCCTGACTAAAATCAT 60.742 50.000 0.00 0.00 44.83 2.45
3060 5584 1.404986 CGGGTCGCCTGACTAAAATCA 60.405 52.381 0.00 0.00 44.83 2.57
3061 5585 1.287425 CGGGTCGCCTGACTAAAATC 58.713 55.000 0.00 0.00 44.83 2.17
3062 5586 3.453559 CGGGTCGCCTGACTAAAAT 57.546 52.632 0.00 0.00 44.83 1.82
3088 5612 2.345760 TAGGAGGCGACGGGTGAAC 61.346 63.158 0.00 0.00 0.00 3.18
3089 5613 2.036098 TAGGAGGCGACGGGTGAA 59.964 61.111 0.00 0.00 0.00 3.18
3090 5614 2.753043 GTAGGAGGCGACGGGTGA 60.753 66.667 0.00 0.00 0.00 4.02
3091 5615 2.754658 AGTAGGAGGCGACGGGTG 60.755 66.667 0.00 0.00 0.00 4.61
3092 5616 2.439883 GAGTAGGAGGCGACGGGT 60.440 66.667 0.00 0.00 0.00 5.28
3093 5617 3.217743 GGAGTAGGAGGCGACGGG 61.218 72.222 0.00 0.00 0.00 5.28
3094 5618 3.217743 GGGAGTAGGAGGCGACGG 61.218 72.222 0.00 0.00 0.00 4.79
3095 5619 3.217743 GGGGAGTAGGAGGCGACG 61.218 72.222 0.00 0.00 0.00 5.12
3096 5620 2.838693 GGGGGAGTAGGAGGCGAC 60.839 72.222 0.00 0.00 0.00 5.19
3110 5634 0.178888 GGATAAGGAGAGGGAGGGGG 60.179 65.000 0.00 0.00 0.00 5.40
3111 5635 0.178888 GGGATAAGGAGAGGGAGGGG 60.179 65.000 0.00 0.00 0.00 4.79
3112 5636 0.178888 GGGGATAAGGAGAGGGAGGG 60.179 65.000 0.00 0.00 0.00 4.30
3113 5637 0.871024 AGGGGATAAGGAGAGGGAGG 59.129 60.000 0.00 0.00 0.00 4.30
3114 5638 2.615391 GAAGGGGATAAGGAGAGGGAG 58.385 57.143 0.00 0.00 0.00 4.30
3115 5639 1.223337 GGAAGGGGATAAGGAGAGGGA 59.777 57.143 0.00 0.00 0.00 4.20
3116 5640 1.735926 GGAAGGGGATAAGGAGAGGG 58.264 60.000 0.00 0.00 0.00 4.30
3117 5641 1.735926 GGGAAGGGGATAAGGAGAGG 58.264 60.000 0.00 0.00 0.00 3.69
3118 5642 1.343069 CGGGAAGGGGATAAGGAGAG 58.657 60.000 0.00 0.00 0.00 3.20
3119 5643 0.640495 ACGGGAAGGGGATAAGGAGA 59.360 55.000 0.00 0.00 0.00 3.71
3120 5644 0.759346 CACGGGAAGGGGATAAGGAG 59.241 60.000 0.00 0.00 0.00 3.69
3121 5645 2.925078 CACGGGAAGGGGATAAGGA 58.075 57.895 0.00 0.00 0.00 3.36
3123 5647 2.869778 AAGCCACGGGAAGGGGATAAG 61.870 57.143 0.00 0.00 44.53 1.73
3124 5648 0.917333 AAGCCACGGGAAGGGGATAA 60.917 55.000 0.00 0.00 44.53 1.75
3125 5649 1.307517 AAGCCACGGGAAGGGGATA 60.308 57.895 0.00 0.00 44.53 2.59
3129 5653 4.778143 CGGAAGCCACGGGAAGGG 62.778 72.222 0.00 0.00 0.00 3.95
3130 5654 2.536997 AATCGGAAGCCACGGGAAGG 62.537 60.000 0.00 0.00 0.00 3.46
3131 5655 1.078426 AATCGGAAGCCACGGGAAG 60.078 57.895 0.00 0.00 0.00 3.46
3132 5656 1.078708 GAATCGGAAGCCACGGGAA 60.079 57.895 0.00 0.00 0.00 3.97
3133 5657 2.287274 TGAATCGGAAGCCACGGGA 61.287 57.895 0.00 0.00 0.00 5.14
3134 5658 2.106683 GTGAATCGGAAGCCACGGG 61.107 63.158 0.00 0.00 0.00 5.28
3135 5659 1.079127 AGTGAATCGGAAGCCACGG 60.079 57.895 0.00 0.00 34.93 4.94
3136 5660 0.389817 TGAGTGAATCGGAAGCCACG 60.390 55.000 0.00 0.00 34.93 4.94
3137 5661 1.936547 GATGAGTGAATCGGAAGCCAC 59.063 52.381 0.00 0.00 0.00 5.01
3138 5662 1.134401 GGATGAGTGAATCGGAAGCCA 60.134 52.381 0.00 0.00 0.00 4.75
3139 5663 1.139853 AGGATGAGTGAATCGGAAGCC 59.860 52.381 0.00 0.00 0.00 4.35
3140 5664 2.208431 CAGGATGAGTGAATCGGAAGC 58.792 52.381 0.00 0.00 39.69 3.86
3141 5665 2.208431 GCAGGATGAGTGAATCGGAAG 58.792 52.381 0.00 0.00 39.69 3.46
3142 5666 1.471501 CGCAGGATGAGTGAATCGGAA 60.472 52.381 0.00 0.00 39.69 4.30
3143 5667 0.103026 CGCAGGATGAGTGAATCGGA 59.897 55.000 0.00 0.00 39.69 4.55
3144 5668 1.493950 GCGCAGGATGAGTGAATCGG 61.494 60.000 0.30 0.00 39.69 4.18
3145 5669 0.529337 AGCGCAGGATGAGTGAATCG 60.529 55.000 11.47 0.00 39.69 3.34
3146 5670 0.935898 CAGCGCAGGATGAGTGAATC 59.064 55.000 11.47 0.00 39.69 2.52
3147 5671 1.094073 GCAGCGCAGGATGAGTGAAT 61.094 55.000 11.47 0.00 39.69 2.57
3148 5672 1.742880 GCAGCGCAGGATGAGTGAA 60.743 57.895 11.47 0.00 39.69 3.18
3149 5673 2.125391 GCAGCGCAGGATGAGTGA 60.125 61.111 11.47 0.00 39.69 3.41
3150 5674 3.200593 GGCAGCGCAGGATGAGTG 61.201 66.667 11.47 0.00 39.69 3.51
3151 5675 3.382803 GAGGCAGCGCAGGATGAGT 62.383 63.158 11.47 0.00 39.69 3.41
3152 5676 2.588314 GAGGCAGCGCAGGATGAG 60.588 66.667 11.47 0.00 39.69 2.90
3153 5677 4.519437 CGAGGCAGCGCAGGATGA 62.519 66.667 11.47 0.00 39.69 2.92
3161 5685 2.152297 ATAGATGAGGCGAGGCAGCG 62.152 60.000 0.00 0.00 38.18 5.18
3162 5686 0.389687 GATAGATGAGGCGAGGCAGC 60.390 60.000 0.00 0.00 0.00 5.25
3163 5687 0.109365 CGATAGATGAGGCGAGGCAG 60.109 60.000 0.00 0.00 39.76 4.85
3164 5688 0.537371 TCGATAGATGAGGCGAGGCA 60.537 55.000 0.00 0.00 42.67 4.75
3165 5689 2.258317 TCGATAGATGAGGCGAGGC 58.742 57.895 0.00 0.00 42.67 4.70
3182 5706 1.067846 AGCGGGGCGAAAATCTTTTTC 60.068 47.619 3.23 3.23 0.00 2.29
3183 5707 0.966179 AGCGGGGCGAAAATCTTTTT 59.034 45.000 0.00 0.00 0.00 1.94
3184 5708 0.966179 AAGCGGGGCGAAAATCTTTT 59.034 45.000 0.00 0.00 0.00 2.27
3185 5709 0.966179 AAAGCGGGGCGAAAATCTTT 59.034 45.000 0.00 0.00 0.00 2.52
3186 5710 1.828979 TAAAGCGGGGCGAAAATCTT 58.171 45.000 0.00 0.00 0.00 2.40
3187 5711 2.052782 ATAAAGCGGGGCGAAAATCT 57.947 45.000 0.00 0.00 0.00 2.40
3188 5712 3.252458 ACATATAAAGCGGGGCGAAAATC 59.748 43.478 0.00 0.00 0.00 2.17
3189 5713 3.219281 ACATATAAAGCGGGGCGAAAAT 58.781 40.909 0.00 0.00 0.00 1.82
3190 5714 2.645802 ACATATAAAGCGGGGCGAAAA 58.354 42.857 0.00 0.00 0.00 2.29
3191 5715 2.335316 ACATATAAAGCGGGGCGAAA 57.665 45.000 0.00 0.00 0.00 3.46
3192 5716 3.472283 TTACATATAAAGCGGGGCGAA 57.528 42.857 0.00 0.00 0.00 4.70
3193 5717 3.395639 CTTTACATATAAAGCGGGGCGA 58.604 45.455 0.00 0.00 40.60 5.54
3194 5718 3.806316 CTTTACATATAAAGCGGGGCG 57.194 47.619 0.00 0.00 40.60 6.13
3205 5729 9.716507 GTTGTTGATAATCGTTGCTTTACATAT 57.283 29.630 0.00 0.00 0.00 1.78
3206 5730 8.178964 GGTTGTTGATAATCGTTGCTTTACATA 58.821 33.333 0.00 0.00 0.00 2.29
3207 5731 7.027161 GGTTGTTGATAATCGTTGCTTTACAT 58.973 34.615 0.00 0.00 0.00 2.29
3208 5732 6.205853 AGGTTGTTGATAATCGTTGCTTTACA 59.794 34.615 0.00 0.00 0.00 2.41
3209 5733 6.523201 CAGGTTGTTGATAATCGTTGCTTTAC 59.477 38.462 0.00 0.00 0.00 2.01
3210 5734 6.428465 TCAGGTTGTTGATAATCGTTGCTTTA 59.572 34.615 0.00 0.00 0.00 1.85
3211 5735 5.240623 TCAGGTTGTTGATAATCGTTGCTTT 59.759 36.000 0.00 0.00 0.00 3.51
3212 5736 4.759693 TCAGGTTGTTGATAATCGTTGCTT 59.240 37.500 0.00 0.00 0.00 3.91
3213 5737 4.323417 TCAGGTTGTTGATAATCGTTGCT 58.677 39.130 0.00 0.00 0.00 3.91
3214 5738 4.678509 TCAGGTTGTTGATAATCGTTGC 57.321 40.909 0.00 0.00 0.00 4.17
3215 5739 7.302350 TGTATCAGGTTGTTGATAATCGTTG 57.698 36.000 0.00 0.00 40.64 4.10
3216 5740 7.915293 TTGTATCAGGTTGTTGATAATCGTT 57.085 32.000 0.00 0.00 40.64 3.85
3217 5741 7.389330 TGTTTGTATCAGGTTGTTGATAATCGT 59.611 33.333 0.00 0.00 40.64 3.73
3218 5742 7.692291 GTGTTTGTATCAGGTTGTTGATAATCG 59.308 37.037 0.00 0.00 40.64 3.34
3219 5743 8.511321 TGTGTTTGTATCAGGTTGTTGATAATC 58.489 33.333 0.00 0.00 40.64 1.75
3220 5744 8.296713 GTGTGTTTGTATCAGGTTGTTGATAAT 58.703 33.333 0.00 0.00 40.64 1.28
3221 5745 7.519168 CGTGTGTTTGTATCAGGTTGTTGATAA 60.519 37.037 0.00 0.00 40.64 1.75
3222 5746 6.073494 CGTGTGTTTGTATCAGGTTGTTGATA 60.073 38.462 0.00 0.00 38.65 2.15
3223 5747 5.277779 CGTGTGTTTGTATCAGGTTGTTGAT 60.278 40.000 0.00 0.00 40.70 2.57
3224 5748 4.034626 CGTGTGTTTGTATCAGGTTGTTGA 59.965 41.667 0.00 0.00 0.00 3.18
3225 5749 4.278858 CGTGTGTTTGTATCAGGTTGTTG 58.721 43.478 0.00 0.00 0.00 3.33
3226 5750 3.242936 GCGTGTGTTTGTATCAGGTTGTT 60.243 43.478 0.00 0.00 0.00 2.83
3227 5751 2.289547 GCGTGTGTTTGTATCAGGTTGT 59.710 45.455 0.00 0.00 0.00 3.32
3228 5752 2.350388 GGCGTGTGTTTGTATCAGGTTG 60.350 50.000 0.00 0.00 0.00 3.77
3229 5753 1.877443 GGCGTGTGTTTGTATCAGGTT 59.123 47.619 0.00 0.00 0.00 3.50
3230 5754 1.202710 TGGCGTGTGTTTGTATCAGGT 60.203 47.619 0.00 0.00 0.00 4.00
3231 5755 1.196808 GTGGCGTGTGTTTGTATCAGG 59.803 52.381 0.00 0.00 0.00 3.86
3232 5756 1.196808 GGTGGCGTGTGTTTGTATCAG 59.803 52.381 0.00 0.00 0.00 2.90
3233 5757 1.231221 GGTGGCGTGTGTTTGTATCA 58.769 50.000 0.00 0.00 0.00 2.15
3234 5758 1.069500 GTGGTGGCGTGTGTTTGTATC 60.069 52.381 0.00 0.00 0.00 2.24
3235 5759 0.948678 GTGGTGGCGTGTGTTTGTAT 59.051 50.000 0.00 0.00 0.00 2.29
3236 5760 0.392595 TGTGGTGGCGTGTGTTTGTA 60.393 50.000 0.00 0.00 0.00 2.41
3237 5761 1.244697 TTGTGGTGGCGTGTGTTTGT 61.245 50.000 0.00 0.00 0.00 2.83
3238 5762 0.800300 GTTGTGGTGGCGTGTGTTTG 60.800 55.000 0.00 0.00 0.00 2.93
3239 5763 1.244697 TGTTGTGGTGGCGTGTGTTT 61.245 50.000 0.00 0.00 0.00 2.83
3240 5764 1.675972 TGTTGTGGTGGCGTGTGTT 60.676 52.632 0.00 0.00 0.00 3.32
3241 5765 2.045829 TGTTGTGGTGGCGTGTGT 60.046 55.556 0.00 0.00 0.00 3.72
3242 5766 2.402572 TGTGTTGTGGTGGCGTGTG 61.403 57.895 0.00 0.00 0.00 3.82
3243 5767 2.045829 TGTGTTGTGGTGGCGTGT 60.046 55.556 0.00 0.00 0.00 4.49
3244 5768 2.407210 GTGTGTTGTGGTGGCGTG 59.593 61.111 0.00 0.00 0.00 5.34
3245 5769 3.199190 CGTGTGTTGTGGTGGCGT 61.199 61.111 0.00 0.00 0.00 5.68
3246 5770 4.605967 GCGTGTGTTGTGGTGGCG 62.606 66.667 0.00 0.00 0.00 5.69
3247 5771 3.513438 TGCGTGTGTTGTGGTGGC 61.513 61.111 0.00 0.00 0.00 5.01
3248 5772 2.402572 TGTGCGTGTGTTGTGGTGG 61.403 57.895 0.00 0.00 0.00 4.61
3249 5773 1.226267 GTGTGCGTGTGTTGTGGTG 60.226 57.895 0.00 0.00 0.00 4.17
3250 5774 1.029408 ATGTGTGCGTGTGTTGTGGT 61.029 50.000 0.00 0.00 0.00 4.16
3251 5775 0.316937 GATGTGTGCGTGTGTTGTGG 60.317 55.000 0.00 0.00 0.00 4.17
3252 5776 0.316937 GGATGTGTGCGTGTGTTGTG 60.317 55.000 0.00 0.00 0.00 3.33
3253 5777 0.746204 TGGATGTGTGCGTGTGTTGT 60.746 50.000 0.00 0.00 0.00 3.32
3254 5778 0.380024 TTGGATGTGTGCGTGTGTTG 59.620 50.000 0.00 0.00 0.00 3.33
3255 5779 0.662619 CTTGGATGTGTGCGTGTGTT 59.337 50.000 0.00 0.00 0.00 3.32
3256 5780 1.785041 GCTTGGATGTGTGCGTGTGT 61.785 55.000 0.00 0.00 0.00 3.72
3257 5781 1.081906 GCTTGGATGTGTGCGTGTG 60.082 57.895 0.00 0.00 0.00 3.82
3258 5782 1.509644 CTGCTTGGATGTGTGCGTGT 61.510 55.000 0.00 0.00 0.00 4.49
3259 5783 1.208358 CTGCTTGGATGTGTGCGTG 59.792 57.895 0.00 0.00 0.00 5.34
3260 5784 0.952497 CTCTGCTTGGATGTGTGCGT 60.952 55.000 0.00 0.00 0.00 5.24
3261 5785 0.671472 TCTCTGCTTGGATGTGTGCG 60.671 55.000 0.00 0.00 0.00 5.34
3262 5786 1.400846 CATCTCTGCTTGGATGTGTGC 59.599 52.381 0.00 0.00 35.82 4.57
3263 5787 2.981898 TCATCTCTGCTTGGATGTGTG 58.018 47.619 11.09 0.00 39.93 3.82
3264 5788 3.607741 CTTCATCTCTGCTTGGATGTGT 58.392 45.455 11.09 0.00 39.93 3.72
3265 5789 2.355132 GCTTCATCTCTGCTTGGATGTG 59.645 50.000 11.09 8.06 39.93 3.21
3266 5790 2.239150 AGCTTCATCTCTGCTTGGATGT 59.761 45.455 11.09 0.00 39.93 3.06
3267 5791 2.920524 AGCTTCATCTCTGCTTGGATG 58.079 47.619 0.00 0.00 40.23 3.51
3583 6107 9.474313 TTTATTTTTAGGGCATACATGAGTTCT 57.526 29.630 0.00 0.00 0.00 3.01
3584 6108 9.736023 CTTTATTTTTAGGGCATACATGAGTTC 57.264 33.333 0.00 0.00 0.00 3.01
3585 6109 9.255029 ACTTTATTTTTAGGGCATACATGAGTT 57.745 29.630 0.00 0.00 0.00 3.01
3586 6110 8.823220 ACTTTATTTTTAGGGCATACATGAGT 57.177 30.769 0.00 0.00 0.00 3.41
3588 6112 8.846211 GCTACTTTATTTTTAGGGCATACATGA 58.154 33.333 0.00 0.00 0.00 3.07
3589 6113 8.629158 TGCTACTTTATTTTTAGGGCATACATG 58.371 33.333 0.00 0.00 0.00 3.21
3590 6114 8.760980 TGCTACTTTATTTTTAGGGCATACAT 57.239 30.769 0.00 0.00 0.00 2.29
3591 6115 8.582657 TTGCTACTTTATTTTTAGGGCATACA 57.417 30.769 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.