Multiple sequence alignment - TraesCS6D01G239900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G239900 chr6D 100.000 3515 0 0 1 3515 341081035 341077521 0.000000e+00 6492.0
1 TraesCS6D01G239900 chr6D 98.084 261 4 1 208 468 206587460 206587719 1.690000e-123 453.0
2 TraesCS6D01G239900 chr6D 96.958 263 8 0 207 469 421886354 421886092 3.670000e-120 442.0
3 TraesCS6D01G239900 chr6D 82.188 320 48 3 1216 1529 341079778 341079462 2.370000e-67 267.0
4 TraesCS6D01G239900 chr6D 82.188 320 48 3 1258 1574 341079820 341079507 2.370000e-67 267.0
5 TraesCS6D01G239900 chr6D 89.109 202 20 2 1 201 29358840 29359040 2.380000e-62 250.0
6 TraesCS6D01G239900 chr6D 88.462 208 23 1 1 207 42923287 42923494 2.380000e-62 250.0
7 TraesCS6D01G239900 chr6D 100.000 95 0 0 3902 3996 341077134 341077040 4.100000e-40 176.0
8 TraesCS6D01G239900 chr6D 92.553 94 5 2 3903 3994 351122682 351122775 2.510000e-27 134.0
9 TraesCS6D01G239900 chr6D 93.258 89 4 2 3903 3990 108237993 108238080 3.240000e-26 130.0
10 TraesCS6D01G239900 chr6A 94.454 2290 101 14 1216 3492 480806933 480804657 0.000000e+00 3502.0
11 TraesCS6D01G239900 chr6A 91.707 1025 66 7 557 1574 480807638 480806626 0.000000e+00 1404.0
12 TraesCS6D01G239900 chr6A 88.942 208 22 1 1 207 53440059 53440266 5.120000e-64 255.0
13 TraesCS6D01G239900 chr6A 80.678 295 42 6 1258 1549 480806975 480806693 8.700000e-52 215.0
14 TraesCS6D01G239900 chr6B 91.781 2336 123 31 1216 3492 479395833 479398158 0.000000e+00 3186.0
15 TraesCS6D01G239900 chr6B 92.241 1031 72 4 527 1550 479395060 479396089 0.000000e+00 1454.0
16 TraesCS6D01G239900 chr6B 81.717 361 52 6 1260 1613 479395754 479396107 5.050000e-74 289.0
17 TraesCS6D01G239900 chr6B 85.938 64 5 4 478 537 85791869 85791806 9.270000e-07 65.8
18 TraesCS6D01G239900 chr2D 85.105 1195 154 15 1607 2783 503436764 503437952 0.000000e+00 1199.0
19 TraesCS6D01G239900 chr2D 88.571 210 21 3 1 207 195143243 195143452 6.630000e-63 252.0
20 TraesCS6D01G239900 chr2D 90.385 52 3 2 477 528 324007023 324007072 2.580000e-07 67.6
21 TraesCS6D01G239900 chr2A 84.925 1194 156 15 1608 2783 649484367 649485554 0.000000e+00 1186.0
22 TraesCS6D01G239900 chr2B 84.393 1211 164 18 1590 2783 591912839 591914041 0.000000e+00 1166.0
23 TraesCS6D01G239900 chr1D 78.776 1013 178 31 1618 2608 269515939 269514942 0.000000e+00 645.0
24 TraesCS6D01G239900 chr1D 91.667 96 7 1 3902 3996 42825824 42825729 9.010000e-27 132.0
25 TraesCS6D01G239900 chr1B 78.692 1009 186 26 1618 2608 369512135 369513132 0.000000e+00 645.0
26 TraesCS6D01G239900 chr5A 76.936 1175 233 28 1608 2763 678181257 678180102 5.630000e-178 634.0
27 TraesCS6D01G239900 chr5A 94.318 264 15 0 205 468 85269767 85269504 4.810000e-109 405.0
28 TraesCS6D01G239900 chr4D 80.355 845 151 13 1766 2602 497697349 497698186 9.430000e-176 627.0
29 TraesCS6D01G239900 chr3D 96.958 263 8 0 206 468 599177326 599177588 3.670000e-120 442.0
30 TraesCS6D01G239900 chr3D 95.703 256 10 1 213 468 509752925 509753179 1.030000e-110 411.0
31 TraesCS6D01G239900 chr3D 93.407 91 5 1 3904 3993 382744280 382744370 2.510000e-27 134.0
32 TraesCS6D01G239900 chr3D 91.579 95 6 2 3903 3995 508410987 508410893 3.240000e-26 130.0
33 TraesCS6D01G239900 chr3D 91.489 94 6 2 3903 3994 507759307 507759400 1.170000e-25 128.0
34 TraesCS6D01G239900 chr3D 93.182 44 2 1 476 519 62792379 62792421 3.330000e-06 63.9
35 TraesCS6D01G239900 chr3D 91.489 47 1 2 477 522 430314192 430314236 1.200000e-05 62.1
36 TraesCS6D01G239900 chr7A 96.169 261 10 0 208 468 16122698 16122438 1.030000e-115 427.0
37 TraesCS6D01G239900 chr7A 95.076 264 13 0 206 469 578444492 578444755 2.220000e-112 416.0
38 TraesCS6D01G239900 chr7A 88.679 53 3 3 469 521 175253562 175253513 1.200000e-05 62.1
39 TraesCS6D01G239900 chr4A 94.297 263 15 0 208 470 185863005 185863267 1.730000e-108 403.0
40 TraesCS6D01G239900 chr4A 94.253 261 15 0 208 468 62950512 62950252 2.240000e-107 399.0
41 TraesCS6D01G239900 chr4A 88.462 208 23 1 1 207 91595967 91596174 2.380000e-62 250.0
42 TraesCS6D01G239900 chr4A 87.500 56 5 2 478 532 707072762 707072816 3.330000e-06 63.9
43 TraesCS6D01G239900 chr4A 93.182 44 0 3 479 522 432827749 432827709 1.200000e-05 62.1
44 TraesCS6D01G239900 chr3A 79.610 461 58 17 1496 1955 598409989 598410414 8.400000e-77 298.0
45 TraesCS6D01G239900 chr1A 89.151 212 20 3 1 210 558834738 558834528 1.100000e-65 261.0
46 TraesCS6D01G239900 chr7D 88.995 209 20 3 1 207 15836255 15836462 5.120000e-64 255.0
47 TraesCS6D01G239900 chr7D 88.152 211 24 1 1 210 564144970 564144760 2.380000e-62 250.0
48 TraesCS6D01G239900 chr7D 88.462 208 23 1 1 207 565041520 565041727 2.380000e-62 250.0
49 TraesCS6D01G239900 chr7D 91.489 94 5 3 3903 3994 608121654 608121746 4.190000e-25 126.0
50 TraesCS6D01G239900 chr5D 91.489 94 6 2 3903 3994 434573956 434574049 1.170000e-25 128.0
51 TraesCS6D01G239900 chr5D 91.489 94 6 2 3903 3994 544784982 544784889 1.170000e-25 128.0
52 TraesCS6D01G239900 chr3B 88.136 59 2 2 476 531 1219027 1219083 9.270000e-07 65.8
53 TraesCS6D01G239900 chr5B 95.122 41 1 1 477 517 173460893 173460932 3.330000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G239900 chr6D 341077040 341081035 3995 True 1800.5 6492 91.094000 1 3996 4 chr6D.!!$R2 3995
1 TraesCS6D01G239900 chr6A 480804657 480807638 2981 True 1707.0 3502 88.946333 557 3492 3 chr6A.!!$R1 2935
2 TraesCS6D01G239900 chr6B 479395060 479398158 3098 False 1643.0 3186 88.579667 527 3492 3 chr6B.!!$F1 2965
3 TraesCS6D01G239900 chr2D 503436764 503437952 1188 False 1199.0 1199 85.105000 1607 2783 1 chr2D.!!$F3 1176
4 TraesCS6D01G239900 chr2A 649484367 649485554 1187 False 1186.0 1186 84.925000 1608 2783 1 chr2A.!!$F1 1175
5 TraesCS6D01G239900 chr2B 591912839 591914041 1202 False 1166.0 1166 84.393000 1590 2783 1 chr2B.!!$F1 1193
6 TraesCS6D01G239900 chr1D 269514942 269515939 997 True 645.0 645 78.776000 1618 2608 1 chr1D.!!$R2 990
7 TraesCS6D01G239900 chr1B 369512135 369513132 997 False 645.0 645 78.692000 1618 2608 1 chr1B.!!$F1 990
8 TraesCS6D01G239900 chr5A 678180102 678181257 1155 True 634.0 634 76.936000 1608 2763 1 chr5A.!!$R2 1155
9 TraesCS6D01G239900 chr4D 497697349 497698186 837 False 627.0 627 80.355000 1766 2602 1 chr4D.!!$F1 836

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 502 0.102663 TTGCAACGCATGGGCATATG 59.897 50.000 10.1 0.0 38.76 1.78 F
1105 1113 0.387202 CCCTCTCACCGCTCTGTATG 59.613 60.000 0.0 0.0 0.00 2.39 F
1203 1211 0.817634 CACACGTCACCACCCACAAT 60.818 55.000 0.0 0.0 0.00 2.71 F
2763 2885 1.743252 GCTCAAGAAGCCTGACCCG 60.743 63.158 0.0 0.0 45.92 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 2090 0.313987 CGATGTAGTATGGCTGCCGA 59.686 55.0 14.98 0.93 0.00 5.54 R
2824 2946 0.116940 ACCAACAATGCCCCAATCCT 59.883 50.0 0.00 0.00 0.00 3.24 R
2830 2952 0.687427 ATGGCTACCAACAATGCCCC 60.687 55.0 0.00 0.00 44.32 5.80 R
3948 4113 0.036952 AAGGACATGTGGAGAGCACG 60.037 55.0 1.15 0.00 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.681062 AATACCTTAAAATCTCCTCGATTGAAA 57.319 29.630 0.00 0.00 41.42 2.69
39 40 7.617041 ACCTTAAAATCTCCTCGATTGAAAG 57.383 36.000 0.00 0.00 41.42 2.62
40 41 7.020914 CCTTAAAATCTCCTCGATTGAAAGG 57.979 40.000 11.01 11.01 42.40 3.11
41 42 6.823689 CCTTAAAATCTCCTCGATTGAAAGGA 59.176 38.462 15.97 0.00 46.03 3.36
42 43 7.336931 CCTTAAAATCTCCTCGATTGAAAGGAA 59.663 37.037 15.97 0.00 46.03 3.36
43 44 8.630054 TTAAAATCTCCTCGATTGAAAGGAAA 57.370 30.769 0.00 0.00 41.42 3.13
44 45 7.524717 AAAATCTCCTCGATTGAAAGGAAAA 57.475 32.000 0.00 0.00 41.42 2.29
45 46 6.749923 AATCTCCTCGATTGAAAGGAAAAG 57.250 37.500 0.00 0.00 41.09 2.27
46 47 5.228945 TCTCCTCGATTGAAAGGAAAAGT 57.771 39.130 0.00 0.00 41.09 2.66
47 48 5.621193 TCTCCTCGATTGAAAGGAAAAGTT 58.379 37.500 0.00 0.00 41.09 2.66
48 49 5.470098 TCTCCTCGATTGAAAGGAAAAGTTG 59.530 40.000 0.00 0.00 41.09 3.16
49 50 5.373222 TCCTCGATTGAAAGGAAAAGTTGA 58.627 37.500 0.00 0.00 38.74 3.18
50 51 6.003950 TCCTCGATTGAAAGGAAAAGTTGAT 58.996 36.000 0.00 0.00 38.74 2.57
51 52 6.490040 TCCTCGATTGAAAGGAAAAGTTGATT 59.510 34.615 0.00 0.00 38.74 2.57
52 53 6.583806 CCTCGATTGAAAGGAAAAGTTGATTG 59.416 38.462 0.00 0.00 34.35 2.67
53 54 7.270757 TCGATTGAAAGGAAAAGTTGATTGA 57.729 32.000 0.00 0.00 0.00 2.57
54 55 7.711846 TCGATTGAAAGGAAAAGTTGATTGAA 58.288 30.769 0.00 0.00 0.00 2.69
55 56 8.359642 TCGATTGAAAGGAAAAGTTGATTGAAT 58.640 29.630 0.00 0.00 0.00 2.57
56 57 9.624697 CGATTGAAAGGAAAAGTTGATTGAATA 57.375 29.630 0.00 0.00 0.00 1.75
67 68 8.962884 AAAGTTGATTGAATAATTTATGGGCC 57.037 30.769 0.00 0.00 0.00 5.80
68 69 7.919385 AGTTGATTGAATAATTTATGGGCCT 57.081 32.000 4.53 0.00 0.00 5.19
69 70 8.322905 AGTTGATTGAATAATTTATGGGCCTT 57.677 30.769 4.53 0.00 0.00 4.35
70 71 8.424133 AGTTGATTGAATAATTTATGGGCCTTC 58.576 33.333 4.53 0.00 0.00 3.46
71 72 8.424133 GTTGATTGAATAATTTATGGGCCTTCT 58.576 33.333 4.53 0.00 0.00 2.85
72 73 8.181904 TGATTGAATAATTTATGGGCCTTCTC 57.818 34.615 4.53 0.00 0.00 2.87
73 74 6.976934 TTGAATAATTTATGGGCCTTCTCC 57.023 37.500 4.53 0.00 0.00 3.71
74 75 5.070001 TGAATAATTTATGGGCCTTCTCCG 58.930 41.667 4.53 0.00 0.00 4.63
75 76 2.364972 AATTTATGGGCCTTCTCCGG 57.635 50.000 4.53 0.00 0.00 5.14
96 97 4.905269 GGCCTACGATGACATAACAAAAC 58.095 43.478 0.00 0.00 0.00 2.43
97 98 4.634443 GGCCTACGATGACATAACAAAACT 59.366 41.667 0.00 0.00 0.00 2.66
98 99 5.220605 GGCCTACGATGACATAACAAAACTC 60.221 44.000 0.00 0.00 0.00 3.01
99 100 5.581085 GCCTACGATGACATAACAAAACTCT 59.419 40.000 0.00 0.00 0.00 3.24
100 101 6.092259 GCCTACGATGACATAACAAAACTCTT 59.908 38.462 0.00 0.00 0.00 2.85
101 102 7.277098 GCCTACGATGACATAACAAAACTCTTA 59.723 37.037 0.00 0.00 0.00 2.10
102 103 9.146984 CCTACGATGACATAACAAAACTCTTAA 57.853 33.333 0.00 0.00 0.00 1.85
105 106 9.825972 ACGATGACATAACAAAACTCTTAAATG 57.174 29.630 0.00 0.00 0.00 2.32
106 107 9.825972 CGATGACATAACAAAACTCTTAAATGT 57.174 29.630 0.00 0.00 0.00 2.71
109 110 9.349713 TGACATAACAAAACTCTTAAATGTCCT 57.650 29.630 9.02 0.00 40.63 3.85
110 111 9.612620 GACATAACAAAACTCTTAAATGTCCTG 57.387 33.333 0.00 0.00 37.22 3.86
111 112 8.576442 ACATAACAAAACTCTTAAATGTCCTGG 58.424 33.333 0.00 0.00 0.00 4.45
112 113 8.792633 CATAACAAAACTCTTAAATGTCCTGGA 58.207 33.333 0.00 0.00 0.00 3.86
113 114 7.839680 AACAAAACTCTTAAATGTCCTGGAT 57.160 32.000 0.00 0.00 0.00 3.41
114 115 7.454260 ACAAAACTCTTAAATGTCCTGGATC 57.546 36.000 0.00 0.00 0.00 3.36
115 116 6.149474 ACAAAACTCTTAAATGTCCTGGATCG 59.851 38.462 0.00 0.00 0.00 3.69
116 117 5.677319 AACTCTTAAATGTCCTGGATCGA 57.323 39.130 0.00 0.00 0.00 3.59
117 118 5.878406 ACTCTTAAATGTCCTGGATCGAT 57.122 39.130 0.00 0.00 0.00 3.59
118 119 5.605534 ACTCTTAAATGTCCTGGATCGATG 58.394 41.667 0.54 0.00 0.00 3.84
119 120 5.363868 ACTCTTAAATGTCCTGGATCGATGA 59.636 40.000 0.54 0.00 0.00 2.92
120 121 6.127054 ACTCTTAAATGTCCTGGATCGATGAA 60.127 38.462 0.54 0.00 0.00 2.57
121 122 6.830912 TCTTAAATGTCCTGGATCGATGAAT 58.169 36.000 0.54 0.00 0.00 2.57
122 123 6.707608 TCTTAAATGTCCTGGATCGATGAATG 59.292 38.462 0.54 0.00 0.00 2.67
123 124 2.916702 TGTCCTGGATCGATGAATGG 57.083 50.000 0.54 0.00 0.00 3.16
124 125 2.397597 TGTCCTGGATCGATGAATGGA 58.602 47.619 0.54 2.14 0.00 3.41
125 126 2.771372 TGTCCTGGATCGATGAATGGAA 59.229 45.455 0.54 0.00 0.00 3.53
126 127 3.199727 TGTCCTGGATCGATGAATGGAAA 59.800 43.478 0.54 0.00 0.00 3.13
127 128 4.199310 GTCCTGGATCGATGAATGGAAAA 58.801 43.478 0.54 0.00 0.00 2.29
128 129 4.640201 GTCCTGGATCGATGAATGGAAAAA 59.360 41.667 0.54 0.00 0.00 1.94
129 130 5.300286 GTCCTGGATCGATGAATGGAAAAAT 59.700 40.000 0.54 0.00 0.00 1.82
130 131 6.486657 GTCCTGGATCGATGAATGGAAAAATA 59.513 38.462 0.54 0.00 0.00 1.40
131 132 6.712095 TCCTGGATCGATGAATGGAAAAATAG 59.288 38.462 0.54 0.00 0.00 1.73
132 133 6.317789 TGGATCGATGAATGGAAAAATAGC 57.682 37.500 0.54 0.00 0.00 2.97
133 134 5.827267 TGGATCGATGAATGGAAAAATAGCA 59.173 36.000 0.54 0.00 0.00 3.49
134 135 6.016860 TGGATCGATGAATGGAAAAATAGCAG 60.017 38.462 0.54 0.00 0.00 4.24
135 136 6.205464 GGATCGATGAATGGAAAAATAGCAGA 59.795 38.462 0.54 0.00 0.00 4.26
136 137 7.094463 GGATCGATGAATGGAAAAATAGCAGAT 60.094 37.037 0.54 0.00 0.00 2.90
137 138 7.572523 TCGATGAATGGAAAAATAGCAGATT 57.427 32.000 0.00 0.00 0.00 2.40
138 139 7.420002 TCGATGAATGGAAAAATAGCAGATTG 58.580 34.615 0.00 0.00 0.00 2.67
139 140 7.282901 TCGATGAATGGAAAAATAGCAGATTGA 59.717 33.333 0.00 0.00 0.00 2.57
140 141 8.080417 CGATGAATGGAAAAATAGCAGATTGAT 58.920 33.333 0.00 0.00 0.00 2.57
141 142 9.760077 GATGAATGGAAAAATAGCAGATTGATT 57.240 29.630 0.00 0.00 0.00 2.57
147 148 9.241919 TGGAAAAATAGCAGATTGATTACTTCA 57.758 29.630 0.00 0.00 0.00 3.02
148 149 9.508567 GGAAAAATAGCAGATTGATTACTTCAC 57.491 33.333 0.00 0.00 32.84 3.18
150 151 9.846248 AAAAATAGCAGATTGATTACTTCACAC 57.154 29.630 0.00 0.00 32.84 3.82
151 152 8.798859 AAATAGCAGATTGATTACTTCACACT 57.201 30.769 0.00 0.00 32.84 3.55
152 153 8.430801 AATAGCAGATTGATTACTTCACACTC 57.569 34.615 0.00 0.00 32.84 3.51
153 154 5.798132 AGCAGATTGATTACTTCACACTCA 58.202 37.500 0.00 0.00 32.84 3.41
154 155 5.641209 AGCAGATTGATTACTTCACACTCAC 59.359 40.000 0.00 0.00 32.84 3.51
155 156 5.445142 GCAGATTGATTACTTCACACTCACG 60.445 44.000 0.00 0.00 32.84 4.35
156 157 5.863935 CAGATTGATTACTTCACACTCACGA 59.136 40.000 0.00 0.00 32.84 4.35
157 158 6.366061 CAGATTGATTACTTCACACTCACGAA 59.634 38.462 0.00 0.00 32.84 3.85
158 159 6.929049 AGATTGATTACTTCACACTCACGAAA 59.071 34.615 0.00 0.00 32.84 3.46
159 160 5.900339 TGATTACTTCACACTCACGAAAC 57.100 39.130 0.00 0.00 0.00 2.78
160 161 4.748102 TGATTACTTCACACTCACGAAACC 59.252 41.667 0.00 0.00 0.00 3.27
161 162 1.567504 ACTTCACACTCACGAAACCG 58.432 50.000 0.00 0.00 0.00 4.44
162 163 1.135527 ACTTCACACTCACGAAACCGA 59.864 47.619 0.00 0.00 0.00 4.69
163 164 1.787155 CTTCACACTCACGAAACCGAG 59.213 52.381 0.00 0.00 35.30 4.63
164 165 1.026584 TCACACTCACGAAACCGAGA 58.973 50.000 0.00 0.00 33.33 4.04
165 166 1.406180 TCACACTCACGAAACCGAGAA 59.594 47.619 0.00 0.00 33.33 2.87
166 167 1.787155 CACACTCACGAAACCGAGAAG 59.213 52.381 0.00 0.00 33.33 2.85
167 168 0.784778 CACTCACGAAACCGAGAAGC 59.215 55.000 0.00 0.00 33.33 3.86
168 169 0.674534 ACTCACGAAACCGAGAAGCT 59.325 50.000 0.00 0.00 33.33 3.74
169 170 1.884579 ACTCACGAAACCGAGAAGCTA 59.115 47.619 0.00 0.00 33.33 3.32
170 171 2.295349 ACTCACGAAACCGAGAAGCTAA 59.705 45.455 0.00 0.00 33.33 3.09
171 172 3.243636 ACTCACGAAACCGAGAAGCTAAA 60.244 43.478 0.00 0.00 33.33 1.85
172 173 3.921677 TCACGAAACCGAGAAGCTAAAT 58.078 40.909 0.00 0.00 0.00 1.40
173 174 5.063180 TCACGAAACCGAGAAGCTAAATA 57.937 39.130 0.00 0.00 0.00 1.40
174 175 5.657474 TCACGAAACCGAGAAGCTAAATAT 58.343 37.500 0.00 0.00 0.00 1.28
175 176 6.103997 TCACGAAACCGAGAAGCTAAATATT 58.896 36.000 0.00 0.00 0.00 1.28
176 177 6.255020 TCACGAAACCGAGAAGCTAAATATTC 59.745 38.462 0.00 0.00 0.00 1.75
177 178 5.522824 ACGAAACCGAGAAGCTAAATATTCC 59.477 40.000 0.00 0.00 0.00 3.01
178 179 5.753921 CGAAACCGAGAAGCTAAATATTCCT 59.246 40.000 0.00 0.00 0.00 3.36
179 180 6.258068 CGAAACCGAGAAGCTAAATATTCCTT 59.742 38.462 0.00 0.00 0.00 3.36
180 181 7.201617 CGAAACCGAGAAGCTAAATATTCCTTT 60.202 37.037 0.00 0.00 0.00 3.11
181 182 7.939784 AACCGAGAAGCTAAATATTCCTTTT 57.060 32.000 0.00 0.00 0.00 2.27
182 183 7.939784 ACCGAGAAGCTAAATATTCCTTTTT 57.060 32.000 0.00 0.00 0.00 1.94
183 184 7.986562 ACCGAGAAGCTAAATATTCCTTTTTC 58.013 34.615 0.00 0.00 0.00 2.29
184 185 7.610305 ACCGAGAAGCTAAATATTCCTTTTTCA 59.390 33.333 0.00 0.00 0.00 2.69
185 186 7.910683 CCGAGAAGCTAAATATTCCTTTTTCAC 59.089 37.037 0.00 0.00 0.00 3.18
186 187 7.636359 CGAGAAGCTAAATATTCCTTTTTCACG 59.364 37.037 0.00 0.00 0.00 4.35
187 188 8.336801 AGAAGCTAAATATTCCTTTTTCACGT 57.663 30.769 0.00 0.00 0.00 4.49
188 189 8.237267 AGAAGCTAAATATTCCTTTTTCACGTG 58.763 33.333 9.94 9.94 0.00 4.49
189 190 6.322491 AGCTAAATATTCCTTTTTCACGTGC 58.678 36.000 11.67 0.00 0.00 5.34
190 191 6.072175 AGCTAAATATTCCTTTTTCACGTGCA 60.072 34.615 11.67 0.00 0.00 4.57
191 192 6.033513 GCTAAATATTCCTTTTTCACGTGCAC 59.966 38.462 11.67 6.82 0.00 4.57
192 193 5.446143 AATATTCCTTTTTCACGTGCACA 57.554 34.783 18.64 0.00 0.00 4.57
193 194 2.553079 TTCCTTTTTCACGTGCACAC 57.447 45.000 18.64 0.00 0.00 3.82
194 195 1.454201 TCCTTTTTCACGTGCACACA 58.546 45.000 18.64 0.00 0.00 3.72
195 196 1.131504 TCCTTTTTCACGTGCACACAC 59.868 47.619 18.64 0.00 43.76 3.82
205 206 2.969443 GTGCACACACGATTTAGCTT 57.031 45.000 13.17 0.00 36.98 3.74
206 207 2.574322 GTGCACACACGATTTAGCTTG 58.426 47.619 13.17 0.00 36.98 4.01
207 208 2.032030 GTGCACACACGATTTAGCTTGT 60.032 45.455 13.17 0.00 36.98 3.16
208 209 3.185594 GTGCACACACGATTTAGCTTGTA 59.814 43.478 13.17 0.00 36.98 2.41
209 210 3.185594 TGCACACACGATTTAGCTTGTAC 59.814 43.478 0.00 0.00 0.00 2.90
210 211 3.432252 GCACACACGATTTAGCTTGTACT 59.568 43.478 0.00 0.00 0.00 2.73
211 212 4.434330 GCACACACGATTTAGCTTGTACTC 60.434 45.833 0.00 0.00 0.00 2.59
212 213 4.091509 CACACACGATTTAGCTTGTACTCC 59.908 45.833 0.00 0.00 0.00 3.85
213 214 3.617263 CACACGATTTAGCTTGTACTCCC 59.383 47.826 0.00 0.00 0.00 4.30
214 215 3.514309 ACACGATTTAGCTTGTACTCCCT 59.486 43.478 0.00 0.00 0.00 4.20
215 216 4.113354 CACGATTTAGCTTGTACTCCCTC 58.887 47.826 0.00 0.00 0.00 4.30
216 217 3.132467 ACGATTTAGCTTGTACTCCCTCC 59.868 47.826 0.00 0.00 0.00 4.30
217 218 3.718815 GATTTAGCTTGTACTCCCTCCG 58.281 50.000 0.00 0.00 0.00 4.63
218 219 1.481871 TTAGCTTGTACTCCCTCCGG 58.518 55.000 0.00 0.00 0.00 5.14
219 220 0.333993 TAGCTTGTACTCCCTCCGGT 59.666 55.000 0.00 0.00 0.00 5.28
220 221 0.971447 AGCTTGTACTCCCTCCGGTC 60.971 60.000 0.00 0.00 0.00 4.79
221 222 1.255667 GCTTGTACTCCCTCCGGTCA 61.256 60.000 0.00 0.00 0.00 4.02
222 223 1.486211 CTTGTACTCCCTCCGGTCAT 58.514 55.000 0.00 0.00 0.00 3.06
223 224 1.831736 CTTGTACTCCCTCCGGTCATT 59.168 52.381 0.00 0.00 0.00 2.57
224 225 1.946984 TGTACTCCCTCCGGTCATTT 58.053 50.000 0.00 0.00 0.00 2.32
225 226 2.262637 TGTACTCCCTCCGGTCATTTT 58.737 47.619 0.00 0.00 0.00 1.82
226 227 2.640826 TGTACTCCCTCCGGTCATTTTT 59.359 45.455 0.00 0.00 0.00 1.94
227 228 3.839490 TGTACTCCCTCCGGTCATTTTTA 59.161 43.478 0.00 0.00 0.00 1.52
228 229 3.629142 ACTCCCTCCGGTCATTTTTAG 57.371 47.619 0.00 0.00 0.00 1.85
229 230 2.910977 ACTCCCTCCGGTCATTTTTAGT 59.089 45.455 0.00 0.00 0.00 2.24
230 231 3.329814 ACTCCCTCCGGTCATTTTTAGTT 59.670 43.478 0.00 0.00 0.00 2.24
231 232 3.939592 CTCCCTCCGGTCATTTTTAGTTC 59.060 47.826 0.00 0.00 0.00 3.01
232 233 2.676342 CCCTCCGGTCATTTTTAGTTCG 59.324 50.000 0.00 0.00 0.00 3.95
233 234 2.095372 CCTCCGGTCATTTTTAGTTCGC 59.905 50.000 0.00 0.00 0.00 4.70
234 235 2.739913 CTCCGGTCATTTTTAGTTCGCA 59.260 45.455 0.00 0.00 0.00 5.10
235 236 3.340034 TCCGGTCATTTTTAGTTCGCAT 58.660 40.909 0.00 0.00 0.00 4.73
236 237 4.505808 TCCGGTCATTTTTAGTTCGCATA 58.494 39.130 0.00 0.00 0.00 3.14
237 238 5.120399 TCCGGTCATTTTTAGTTCGCATAT 58.880 37.500 0.00 0.00 0.00 1.78
238 239 6.282167 TCCGGTCATTTTTAGTTCGCATATA 58.718 36.000 0.00 0.00 0.00 0.86
239 240 6.762187 TCCGGTCATTTTTAGTTCGCATATAA 59.238 34.615 0.00 0.00 0.00 0.98
240 241 7.042321 TCCGGTCATTTTTAGTTCGCATATAAG 60.042 37.037 0.00 0.00 0.00 1.73
241 242 7.042321 CCGGTCATTTTTAGTTCGCATATAAGA 60.042 37.037 0.00 0.00 0.00 2.10
242 243 8.495949 CGGTCATTTTTAGTTCGCATATAAGAT 58.504 33.333 0.00 0.00 0.00 2.40
250 251 9.594478 TTTAGTTCGCATATAAGATTTGTCTGA 57.406 29.630 0.00 0.00 0.00 3.27
251 252 9.594478 TTAGTTCGCATATAAGATTTGTCTGAA 57.406 29.630 0.00 0.00 0.00 3.02
252 253 8.136057 AGTTCGCATATAAGATTTGTCTGAAG 57.864 34.615 0.00 0.00 0.00 3.02
253 254 7.766278 AGTTCGCATATAAGATTTGTCTGAAGT 59.234 33.333 0.00 0.00 0.00 3.01
254 255 7.700322 TCGCATATAAGATTTGTCTGAAGTC 57.300 36.000 0.00 0.00 0.00 3.01
255 256 7.264947 TCGCATATAAGATTTGTCTGAAGTCA 58.735 34.615 0.00 0.00 0.00 3.41
256 257 7.763985 TCGCATATAAGATTTGTCTGAAGTCAA 59.236 33.333 0.00 0.00 0.00 3.18
257 258 8.390354 CGCATATAAGATTTGTCTGAAGTCAAA 58.610 33.333 5.43 5.43 37.44 2.69
258 259 9.495754 GCATATAAGATTTGTCTGAAGTCAAAC 57.504 33.333 5.13 1.59 36.30 2.93
262 263 6.233430 AGATTTGTCTGAAGTCAAACATCG 57.767 37.500 5.13 0.00 36.30 3.84
263 264 5.760253 AGATTTGTCTGAAGTCAAACATCGT 59.240 36.000 5.13 0.00 36.30 3.73
264 265 6.929049 AGATTTGTCTGAAGTCAAACATCGTA 59.071 34.615 5.13 0.00 36.30 3.43
265 266 6.912203 TTTGTCTGAAGTCAAACATCGTAA 57.088 33.333 0.00 0.00 30.47 3.18
266 267 6.912203 TTGTCTGAAGTCAAACATCGTAAA 57.088 33.333 0.00 0.00 0.00 2.01
267 268 6.281848 TGTCTGAAGTCAAACATCGTAAAC 57.718 37.500 0.00 0.00 0.00 2.01
268 269 6.046593 TGTCTGAAGTCAAACATCGTAAACT 58.953 36.000 0.00 0.00 0.00 2.66
269 270 6.537301 TGTCTGAAGTCAAACATCGTAAACTT 59.463 34.615 0.00 0.00 0.00 2.66
270 271 7.065324 TGTCTGAAGTCAAACATCGTAAACTTT 59.935 33.333 0.00 0.00 0.00 2.66
271 272 7.373441 GTCTGAAGTCAAACATCGTAAACTTTG 59.627 37.037 0.00 0.00 0.00 2.77
272 273 7.279090 TCTGAAGTCAAACATCGTAAACTTTGA 59.721 33.333 0.00 0.00 31.68 2.69
273 274 7.184106 TGAAGTCAAACATCGTAAACTTTGAC 58.816 34.615 12.19 12.19 46.84 3.18
275 276 5.812652 GTCAAACATCGTAAACTTTGACCA 58.187 37.500 9.86 0.00 43.35 4.02
276 277 6.259638 GTCAAACATCGTAAACTTTGACCAA 58.740 36.000 9.86 0.00 43.35 3.67
277 278 6.413818 GTCAAACATCGTAAACTTTGACCAAG 59.586 38.462 9.86 0.00 43.35 3.61
331 332 7.103159 TGTGAAATCAACAACATTAAATGCG 57.897 32.000 0.00 0.00 0.00 4.73
332 333 6.699204 TGTGAAATCAACAACATTAAATGCGT 59.301 30.769 0.00 0.00 0.00 5.24
333 334 7.096271 TGTGAAATCAACAACATTAAATGCGTC 60.096 33.333 0.00 0.00 0.00 5.19
334 335 6.920210 TGAAATCAACAACATTAAATGCGTCA 59.080 30.769 0.00 0.00 0.00 4.35
335 336 7.598118 TGAAATCAACAACATTAAATGCGTCAT 59.402 29.630 0.00 0.00 0.00 3.06
336 337 6.874297 ATCAACAACATTAAATGCGTCATG 57.126 33.333 0.00 0.00 0.00 3.07
337 338 6.006759 TCAACAACATTAAATGCGTCATGA 57.993 33.333 0.00 0.00 0.00 3.07
338 339 5.855925 TCAACAACATTAAATGCGTCATGAC 59.144 36.000 16.21 16.21 0.00 3.06
339 340 5.627499 ACAACATTAAATGCGTCATGACT 57.373 34.783 22.95 7.01 0.00 3.41
340 341 6.012658 ACAACATTAAATGCGTCATGACTT 57.987 33.333 22.95 12.92 0.00 3.01
341 342 6.446318 ACAACATTAAATGCGTCATGACTTT 58.554 32.000 22.95 17.91 0.00 2.66
342 343 7.589395 ACAACATTAAATGCGTCATGACTTTA 58.411 30.769 22.95 16.98 0.00 1.85
343 344 8.079203 ACAACATTAAATGCGTCATGACTTTAA 58.921 29.630 23.10 23.10 0.00 1.52
344 345 9.075519 CAACATTAAATGCGTCATGACTTTAAT 57.924 29.630 24.59 24.59 33.37 1.40
345 346 9.638239 AACATTAAATGCGTCATGACTTTAATT 57.362 25.926 26.22 17.96 32.06 1.40
346 347 9.638239 ACATTAAATGCGTCATGACTTTAATTT 57.362 25.926 26.22 21.52 32.06 1.82
349 350 9.684448 TTAAATGCGTCATGACTTTAATTTTCA 57.316 25.926 22.95 10.37 0.00 2.69
350 351 8.761575 AAATGCGTCATGACTTTAATTTTCAT 57.238 26.923 22.95 9.11 0.00 2.57
351 352 9.853555 AAATGCGTCATGACTTTAATTTTCATA 57.146 25.926 22.95 0.00 0.00 2.15
354 355 9.288124 TGCGTCATGACTTTAATTTTCATATTG 57.712 29.630 22.95 3.02 0.00 1.90
355 356 9.289303 GCGTCATGACTTTAATTTTCATATTGT 57.711 29.630 22.95 0.00 0.00 2.71
442 443 9.495754 GTTTGACTTCAGACAATTCTTATATGC 57.504 33.333 0.00 0.00 31.96 3.14
443 444 8.791327 TTGACTTCAGACAATTCTTATATGCA 57.209 30.769 0.00 0.00 0.00 3.96
444 445 8.429493 TGACTTCAGACAATTCTTATATGCAG 57.571 34.615 0.00 0.00 0.00 4.41
445 446 8.260114 TGACTTCAGACAATTCTTATATGCAGA 58.740 33.333 0.00 0.00 0.00 4.26
446 447 8.659925 ACTTCAGACAATTCTTATATGCAGAG 57.340 34.615 0.00 0.00 0.00 3.35
447 448 8.263640 ACTTCAGACAATTCTTATATGCAGAGT 58.736 33.333 0.00 0.00 0.00 3.24
448 449 9.755804 CTTCAGACAATTCTTATATGCAGAGTA 57.244 33.333 0.00 0.00 0.00 2.59
454 455 9.988350 ACAATTCTTATATGCAGAGTAAAAACG 57.012 29.630 0.00 0.00 0.00 3.60
457 458 7.766219 TCTTATATGCAGAGTAAAAACGACC 57.234 36.000 0.00 0.00 0.00 4.79
458 459 6.474427 TCTTATATGCAGAGTAAAAACGACCG 59.526 38.462 0.00 0.00 0.00 4.79
459 460 1.504359 TGCAGAGTAAAAACGACCGG 58.496 50.000 0.00 0.00 0.00 5.28
460 461 1.068895 TGCAGAGTAAAAACGACCGGA 59.931 47.619 9.46 0.00 0.00 5.14
461 462 1.725164 GCAGAGTAAAAACGACCGGAG 59.275 52.381 9.46 3.87 0.00 4.63
476 477 2.884894 CGGAGGGAGTACATGTAACC 57.115 55.000 7.25 13.55 0.00 2.85
477 478 2.385803 CGGAGGGAGTACATGTAACCT 58.614 52.381 19.43 19.43 0.00 3.50
478 479 2.361438 CGGAGGGAGTACATGTAACCTC 59.639 54.545 28.03 28.03 42.84 3.85
481 482 2.884894 GGAGTACATGTAACCTCCCG 57.115 55.000 23.19 0.00 38.01 5.14
482 483 2.105766 GGAGTACATGTAACCTCCCGT 58.894 52.381 23.19 0.00 38.01 5.28
483 484 2.498885 GGAGTACATGTAACCTCCCGTT 59.501 50.000 23.19 0.00 38.01 4.44
484 485 3.518590 GAGTACATGTAACCTCCCGTTG 58.481 50.000 7.25 0.00 35.79 4.10
485 486 2.004733 GTACATGTAACCTCCCGTTGC 58.995 52.381 7.25 0.00 37.56 4.17
488 489 3.009612 TGTAACCTCCCGTTGCAAC 57.990 52.632 19.89 19.89 43.14 4.17
497 498 4.340019 CGTTGCAACGCATGGGCA 62.340 61.111 35.89 0.00 46.06 5.36
498 499 2.262292 GTTGCAACGCATGGGCAT 59.738 55.556 14.90 0.00 38.76 4.40
499 500 1.510383 GTTGCAACGCATGGGCATA 59.490 52.632 14.90 0.00 38.76 3.14
500 501 0.102844 GTTGCAACGCATGGGCATAT 59.897 50.000 14.90 0.00 38.76 1.78
501 502 0.102663 TTGCAACGCATGGGCATATG 59.897 50.000 10.10 0.00 38.76 1.78
502 503 1.036481 TGCAACGCATGGGCATATGT 61.036 50.000 10.10 0.00 41.24 2.29
503 504 0.595567 GCAACGCATGGGCATATGTG 60.596 55.000 10.10 11.45 42.67 3.21
583 584 7.360861 CGATAAGAAACAAAATAGCACTGTCCA 60.361 37.037 0.00 0.00 0.00 4.02
585 586 6.259550 AGAAACAAAATAGCACTGTCCATC 57.740 37.500 0.00 0.00 0.00 3.51
586 587 4.685169 AACAAAATAGCACTGTCCATCG 57.315 40.909 0.00 0.00 0.00 3.84
750 752 1.003112 ATACCGGCCGCAACAAGAA 60.003 52.632 22.85 0.00 0.00 2.52
753 755 2.051345 CGGCCGCAACAAGAACAC 60.051 61.111 14.67 0.00 0.00 3.32
850 857 1.026718 CACGCCATCCCAACCTCTTC 61.027 60.000 0.00 0.00 0.00 2.87
876 883 2.083774 TCCAAATCTCGCTCGCATTTT 58.916 42.857 0.00 0.00 0.00 1.82
885 893 1.506262 CTCGCATTTTCCCCAACGG 59.494 57.895 0.00 0.00 0.00 4.44
977 985 2.131183 GAGGCGAGAATACATGTGAGC 58.869 52.381 9.11 4.69 0.00 4.26
1105 1113 0.387202 CCCTCTCACCGCTCTGTATG 59.613 60.000 0.00 0.00 0.00 2.39
1155 1163 2.359850 TCATGCCCGCCTGAACAC 60.360 61.111 0.00 0.00 0.00 3.32
1203 1211 0.817634 CACACGTCACCACCCACAAT 60.818 55.000 0.00 0.00 0.00 2.71
1971 2090 2.835431 CTCGGGAGGCTCGACCAT 60.835 66.667 8.69 0.00 43.14 3.55
2016 2135 1.984570 CTCCGAGAGCCACCTCCAA 60.985 63.158 0.00 0.00 38.96 3.53
2031 2150 5.065914 CACCTCCAAAACATCTTCTTCTCA 58.934 41.667 0.00 0.00 0.00 3.27
2319 2438 2.030562 CTCTTCCCCAACGTGCGT 59.969 61.111 0.00 0.00 0.00 5.24
2763 2885 1.743252 GCTCAAGAAGCCTGACCCG 60.743 63.158 0.00 0.00 45.92 5.28
2807 2929 3.279434 ACCCTCGATCTGCCATTTTTAC 58.721 45.455 0.00 0.00 0.00 2.01
2808 2930 3.054361 ACCCTCGATCTGCCATTTTTACT 60.054 43.478 0.00 0.00 0.00 2.24
2809 2931 4.163458 ACCCTCGATCTGCCATTTTTACTA 59.837 41.667 0.00 0.00 0.00 1.82
2811 2933 4.212214 CCTCGATCTGCCATTTTTACTAGC 59.788 45.833 0.00 0.00 0.00 3.42
2812 2934 4.765273 TCGATCTGCCATTTTTACTAGCA 58.235 39.130 0.00 0.00 0.00 3.49
2813 2935 5.368145 TCGATCTGCCATTTTTACTAGCAT 58.632 37.500 0.00 0.00 32.11 3.79
2815 2937 7.161404 TCGATCTGCCATTTTTACTAGCATAT 58.839 34.615 0.00 0.00 32.11 1.78
2816 2938 8.311109 TCGATCTGCCATTTTTACTAGCATATA 58.689 33.333 0.00 0.00 32.11 0.86
2832 2954 9.249053 ACTAGCATATATATCGATAGGATTGGG 57.751 37.037 11.41 0.00 36.55 4.12
2833 2955 7.487822 AGCATATATATCGATAGGATTGGGG 57.512 40.000 11.41 0.00 36.55 4.96
2838 2960 2.566833 TCGATAGGATTGGGGCATTG 57.433 50.000 0.00 0.00 0.00 2.82
2839 2961 1.774254 TCGATAGGATTGGGGCATTGT 59.226 47.619 0.00 0.00 0.00 2.71
2840 2962 2.174639 TCGATAGGATTGGGGCATTGTT 59.825 45.455 0.00 0.00 0.00 2.83
2841 2963 2.294233 CGATAGGATTGGGGCATTGTTG 59.706 50.000 0.00 0.00 0.00 3.33
2844 2966 1.360852 AGGATTGGGGCATTGTTGGTA 59.639 47.619 0.00 0.00 0.00 3.25
2845 2967 1.756538 GGATTGGGGCATTGTTGGTAG 59.243 52.381 0.00 0.00 0.00 3.18
2846 2968 1.136891 GATTGGGGCATTGTTGGTAGC 59.863 52.381 0.00 0.00 0.00 3.58
2847 2969 0.902516 TTGGGGCATTGTTGGTAGCC 60.903 55.000 0.00 0.00 46.28 3.93
2888 3023 1.005037 AACTTGCAGTCGCCGATGA 60.005 52.632 0.00 0.00 37.32 2.92
2920 3055 1.679305 GGTGCTGTCCTCTCCGAGA 60.679 63.158 0.00 0.00 0.00 4.04
2956 3091 4.202264 GGGAACAAGACGATGACCATAGAT 60.202 45.833 0.00 0.00 0.00 1.98
2979 3114 0.328258 GGTGTATGCAAGGACTGGGT 59.672 55.000 0.00 0.00 0.00 4.51
3034 3170 5.051641 CGATCGTTAACTCAAATAGGCAGAC 60.052 44.000 7.03 0.00 0.00 3.51
3099 3235 3.242944 CGCACACCTGTAAGATACAATCG 59.757 47.826 0.00 0.00 38.38 3.34
3110 3246 8.496707 TGTAAGATACAATCGTAGTGACACTA 57.503 34.615 11.37 11.37 35.38 2.74
3216 3374 1.612726 GCTCTGAACTTGACCCTGCAT 60.613 52.381 0.00 0.00 0.00 3.96
3230 3388 3.713248 ACCCTGCATTGACAGAGATATCA 59.287 43.478 5.32 0.00 40.25 2.15
3261 3422 8.800370 TCCATGTAGTAACAAATTTGCAGATA 57.200 30.769 18.12 4.16 39.58 1.98
3302 3464 3.181454 ACTGACAGGAAACTTACAGTGGG 60.181 47.826 7.51 0.00 45.92 4.61
3324 3486 5.428253 GGTTACAGGATCTTCATGCACTTA 58.572 41.667 0.00 0.00 30.14 2.24
3325 3487 5.525378 GGTTACAGGATCTTCATGCACTTAG 59.475 44.000 0.00 0.00 30.14 2.18
3419 3584 2.648059 GCTATCTGGAACCATGTTGCT 58.352 47.619 0.00 0.00 0.00 3.91
3492 3657 1.919918 GCTCAACTGCAACACAAACAC 59.080 47.619 0.00 0.00 0.00 3.32
3493 3658 2.176369 CTCAACTGCAACACAAACACG 58.824 47.619 0.00 0.00 0.00 4.49
3494 3659 0.639756 CAACTGCAACACAAACACGC 59.360 50.000 0.00 0.00 0.00 5.34
3495 3660 0.525761 AACTGCAACACAAACACGCT 59.474 45.000 0.00 0.00 0.00 5.07
3496 3661 0.098728 ACTGCAACACAAACACGCTC 59.901 50.000 0.00 0.00 0.00 5.03
3497 3662 0.925267 CTGCAACACAAACACGCTCG 60.925 55.000 0.00 0.00 0.00 5.03
3498 3663 1.654137 GCAACACAAACACGCTCGG 60.654 57.895 0.00 0.00 0.00 4.63
3499 3664 1.654137 CAACACAAACACGCTCGGC 60.654 57.895 0.00 0.00 0.00 5.54
3500 3665 2.830285 AACACAAACACGCTCGGCC 61.830 57.895 0.00 0.00 0.00 6.13
3501 3666 4.025401 CACAAACACGCTCGGCCC 62.025 66.667 0.00 0.00 0.00 5.80
3502 3667 4.555709 ACAAACACGCTCGGCCCA 62.556 61.111 0.00 0.00 0.00 5.36
3503 3668 3.726517 CAAACACGCTCGGCCCAG 61.727 66.667 0.00 0.00 0.00 4.45
3932 4097 4.760047 CTCTTGGGGGCGTCGGTG 62.760 72.222 0.00 0.00 0.00 4.94
3939 4104 4.324991 GGGCGTCGGTGGGAGTTT 62.325 66.667 0.00 0.00 0.00 2.66
3940 4105 2.741211 GGCGTCGGTGGGAGTTTC 60.741 66.667 0.00 0.00 0.00 2.78
3941 4106 3.110178 GCGTCGGTGGGAGTTTCG 61.110 66.667 0.00 0.00 0.00 3.46
3942 4107 2.431942 CGTCGGTGGGAGTTTCGG 60.432 66.667 0.00 0.00 0.00 4.30
3943 4108 2.741211 GTCGGTGGGAGTTTCGGC 60.741 66.667 0.00 0.00 0.00 5.54
3944 4109 4.367023 TCGGTGGGAGTTTCGGCG 62.367 66.667 0.00 0.00 0.00 6.46
3945 4110 4.367023 CGGTGGGAGTTTCGGCGA 62.367 66.667 4.99 4.99 0.00 5.54
3946 4111 2.031465 GGTGGGAGTTTCGGCGAA 59.969 61.111 19.83 19.83 0.00 4.70
3947 4112 1.376812 GGTGGGAGTTTCGGCGAAT 60.377 57.895 24.33 9.61 0.00 3.34
3948 4113 1.366854 GGTGGGAGTTTCGGCGAATC 61.367 60.000 24.33 21.92 0.00 2.52
3949 4114 1.447140 TGGGAGTTTCGGCGAATCG 60.447 57.895 24.33 0.00 0.00 3.34
3950 4115 1.447314 GGGAGTTTCGGCGAATCGT 60.447 57.895 24.33 10.84 0.00 3.73
3951 4116 1.693083 GGGAGTTTCGGCGAATCGTG 61.693 60.000 24.33 0.00 0.00 4.35
3952 4117 1.058903 GAGTTTCGGCGAATCGTGC 59.941 57.895 24.33 13.08 0.00 5.34
3953 4118 1.352156 GAGTTTCGGCGAATCGTGCT 61.352 55.000 24.33 15.43 0.00 4.40
3954 4119 1.058903 GTTTCGGCGAATCGTGCTC 59.941 57.895 24.33 4.79 0.00 4.26
3955 4120 1.080093 TTTCGGCGAATCGTGCTCT 60.080 52.632 24.33 0.00 0.00 4.09
3956 4121 1.076533 TTTCGGCGAATCGTGCTCTC 61.077 55.000 24.33 0.00 0.00 3.20
3957 4122 2.884087 TTCGGCGAATCGTGCTCTCC 62.884 60.000 19.83 0.00 0.00 3.71
3958 4123 2.184322 GGCGAATCGTGCTCTCCA 59.816 61.111 4.07 0.00 0.00 3.86
3959 4124 2.167861 GGCGAATCGTGCTCTCCAC 61.168 63.158 4.07 0.00 41.15 4.02
3960 4125 1.446099 GCGAATCGTGCTCTCCACA 60.446 57.895 4.07 0.00 44.91 4.17
3961 4126 0.807667 GCGAATCGTGCTCTCCACAT 60.808 55.000 4.07 0.00 44.91 3.21
3962 4127 0.926155 CGAATCGTGCTCTCCACATG 59.074 55.000 0.00 0.00 44.91 3.21
3963 4128 1.737029 CGAATCGTGCTCTCCACATGT 60.737 52.381 0.00 0.00 44.91 3.21
3964 4129 1.929836 GAATCGTGCTCTCCACATGTC 59.070 52.381 0.00 0.00 44.91 3.06
3965 4130 0.176680 ATCGTGCTCTCCACATGTCC 59.823 55.000 0.00 0.00 44.91 4.02
3966 4131 0.900182 TCGTGCTCTCCACATGTCCT 60.900 55.000 0.00 0.00 44.91 3.85
3967 4132 0.036952 CGTGCTCTCCACATGTCCTT 60.037 55.000 0.00 0.00 44.91 3.36
3968 4133 1.609061 CGTGCTCTCCACATGTCCTTT 60.609 52.381 0.00 0.00 44.91 3.11
3969 4134 2.508526 GTGCTCTCCACATGTCCTTTT 58.491 47.619 0.00 0.00 44.06 2.27
3970 4135 2.887152 GTGCTCTCCACATGTCCTTTTT 59.113 45.455 0.00 0.00 44.06 1.94
3971 4136 3.057946 GTGCTCTCCACATGTCCTTTTTC 60.058 47.826 0.00 0.00 44.06 2.29
3972 4137 3.181440 TGCTCTCCACATGTCCTTTTTCT 60.181 43.478 0.00 0.00 0.00 2.52
3973 4138 3.823304 GCTCTCCACATGTCCTTTTTCTT 59.177 43.478 0.00 0.00 0.00 2.52
3974 4139 4.320788 GCTCTCCACATGTCCTTTTTCTTG 60.321 45.833 0.00 0.00 0.00 3.02
3975 4140 4.144297 TCTCCACATGTCCTTTTTCTTGG 58.856 43.478 0.00 0.00 0.00 3.61
3976 4141 2.627699 TCCACATGTCCTTTTTCTTGGC 59.372 45.455 0.00 0.00 0.00 4.52
3977 4142 2.289010 CCACATGTCCTTTTTCTTGGCC 60.289 50.000 0.00 0.00 0.00 5.36
3978 4143 1.970640 ACATGTCCTTTTTCTTGGCCC 59.029 47.619 0.00 0.00 0.00 5.80
3979 4144 1.969923 CATGTCCTTTTTCTTGGCCCA 59.030 47.619 0.00 0.00 0.00 5.36
3980 4145 1.408969 TGTCCTTTTTCTTGGCCCAC 58.591 50.000 0.00 0.00 0.00 4.61
3981 4146 1.063266 TGTCCTTTTTCTTGGCCCACT 60.063 47.619 0.00 0.00 0.00 4.00
3982 4147 2.039418 GTCCTTTTTCTTGGCCCACTT 58.961 47.619 0.00 0.00 0.00 3.16
3983 4148 3.227614 GTCCTTTTTCTTGGCCCACTTA 58.772 45.455 0.00 0.00 0.00 2.24
3984 4149 3.639561 GTCCTTTTTCTTGGCCCACTTAA 59.360 43.478 0.00 0.00 0.00 1.85
3985 4150 4.283467 GTCCTTTTTCTTGGCCCACTTAAT 59.717 41.667 0.00 0.00 0.00 1.40
3986 4151 4.526650 TCCTTTTTCTTGGCCCACTTAATC 59.473 41.667 0.00 0.00 0.00 1.75
3987 4152 4.283212 CCTTTTTCTTGGCCCACTTAATCA 59.717 41.667 0.00 0.00 0.00 2.57
3988 4153 5.046376 CCTTTTTCTTGGCCCACTTAATCAT 60.046 40.000 0.00 0.00 0.00 2.45
3989 4154 6.432403 TTTTTCTTGGCCCACTTAATCATT 57.568 33.333 0.00 0.00 0.00 2.57
3990 4155 6.432403 TTTTCTTGGCCCACTTAATCATTT 57.568 33.333 0.00 0.00 0.00 2.32
3991 4156 5.659440 TTCTTGGCCCACTTAATCATTTC 57.341 39.130 0.00 0.00 0.00 2.17
3992 4157 4.023291 TCTTGGCCCACTTAATCATTTCC 58.977 43.478 0.00 0.00 0.00 3.13
3993 4158 3.756082 TGGCCCACTTAATCATTTCCT 57.244 42.857 0.00 0.00 0.00 3.36
3994 4159 4.059773 TGGCCCACTTAATCATTTCCTT 57.940 40.909 0.00 0.00 0.00 3.36
3995 4160 4.023291 TGGCCCACTTAATCATTTCCTTC 58.977 43.478 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.681062 TTTCAATCGAGGAGATTTTAAGGTATT 57.319 29.630 0.00 0.00 46.80 1.89
13 14 9.331282 CTTTCAATCGAGGAGATTTTAAGGTAT 57.669 33.333 0.00 0.00 46.80 2.73
14 15 7.769044 CCTTTCAATCGAGGAGATTTTAAGGTA 59.231 37.037 15.50 0.00 46.80 3.08
15 16 6.599638 CCTTTCAATCGAGGAGATTTTAAGGT 59.400 38.462 15.50 0.00 46.80 3.50
16 17 6.823689 TCCTTTCAATCGAGGAGATTTTAAGG 59.176 38.462 16.62 16.62 46.80 2.69
17 18 7.849804 TCCTTTCAATCGAGGAGATTTTAAG 57.150 36.000 0.00 0.00 46.80 1.85
18 19 8.630054 TTTCCTTTCAATCGAGGAGATTTTAA 57.370 30.769 0.00 0.00 46.80 1.52
19 20 8.630054 TTTTCCTTTCAATCGAGGAGATTTTA 57.370 30.769 0.00 0.00 46.80 1.52
20 21 7.231519 ACTTTTCCTTTCAATCGAGGAGATTTT 59.768 33.333 0.00 0.00 46.80 1.82
21 22 6.717084 ACTTTTCCTTTCAATCGAGGAGATTT 59.283 34.615 0.00 0.00 46.80 2.17
23 24 5.810095 ACTTTTCCTTTCAATCGAGGAGAT 58.190 37.500 0.00 0.00 42.67 2.75
24 25 5.228945 ACTTTTCCTTTCAATCGAGGAGA 57.771 39.130 0.00 0.00 42.67 3.71
25 26 5.470098 TCAACTTTTCCTTTCAATCGAGGAG 59.530 40.000 0.00 0.00 42.67 3.69
26 27 5.373222 TCAACTTTTCCTTTCAATCGAGGA 58.627 37.500 0.00 0.00 40.22 3.71
27 28 5.689383 TCAACTTTTCCTTTCAATCGAGG 57.311 39.130 0.00 0.00 0.00 4.63
28 29 7.362662 TCAATCAACTTTTCCTTTCAATCGAG 58.637 34.615 0.00 0.00 0.00 4.04
29 30 7.270757 TCAATCAACTTTTCCTTTCAATCGA 57.729 32.000 0.00 0.00 0.00 3.59
30 31 7.928908 TTCAATCAACTTTTCCTTTCAATCG 57.071 32.000 0.00 0.00 0.00 3.34
41 42 9.394767 GGCCCATAAATTATTCAATCAACTTTT 57.605 29.630 0.00 0.00 0.00 2.27
42 43 8.771286 AGGCCCATAAATTATTCAATCAACTTT 58.229 29.630 0.00 0.00 0.00 2.66
43 44 8.322905 AGGCCCATAAATTATTCAATCAACTT 57.677 30.769 0.00 0.00 0.00 2.66
44 45 7.919385 AGGCCCATAAATTATTCAATCAACT 57.081 32.000 0.00 0.00 0.00 3.16
45 46 8.424133 AGAAGGCCCATAAATTATTCAATCAAC 58.576 33.333 0.00 0.00 0.00 3.18
46 47 8.551682 AGAAGGCCCATAAATTATTCAATCAA 57.448 30.769 0.00 0.00 0.00 2.57
47 48 7.233348 GGAGAAGGCCCATAAATTATTCAATCA 59.767 37.037 0.00 0.00 0.00 2.57
48 49 7.575720 CGGAGAAGGCCCATAAATTATTCAATC 60.576 40.741 0.00 0.00 0.00 2.67
49 50 6.209391 CGGAGAAGGCCCATAAATTATTCAAT 59.791 38.462 0.00 0.00 0.00 2.57
50 51 5.534654 CGGAGAAGGCCCATAAATTATTCAA 59.465 40.000 0.00 0.00 0.00 2.69
51 52 5.070001 CGGAGAAGGCCCATAAATTATTCA 58.930 41.667 0.00 0.00 0.00 2.57
52 53 4.459337 CCGGAGAAGGCCCATAAATTATTC 59.541 45.833 0.00 0.00 0.00 1.75
53 54 4.407365 CCGGAGAAGGCCCATAAATTATT 58.593 43.478 0.00 0.00 0.00 1.40
54 55 4.034285 CCGGAGAAGGCCCATAAATTAT 57.966 45.455 0.00 0.00 0.00 1.28
55 56 3.502123 CCGGAGAAGGCCCATAAATTA 57.498 47.619 0.00 0.00 0.00 1.40
56 57 2.364972 CCGGAGAAGGCCCATAAATT 57.635 50.000 0.00 0.00 0.00 1.82
66 67 1.107538 TCATCGTAGGCCGGAGAAGG 61.108 60.000 5.05 0.00 37.11 3.46
67 68 0.030908 GTCATCGTAGGCCGGAGAAG 59.969 60.000 5.05 0.00 37.11 2.85
68 69 0.681887 TGTCATCGTAGGCCGGAGAA 60.682 55.000 5.05 0.00 37.11 2.87
69 70 0.467474 ATGTCATCGTAGGCCGGAGA 60.467 55.000 5.05 0.00 37.11 3.71
70 71 1.244816 TATGTCATCGTAGGCCGGAG 58.755 55.000 5.05 0.00 37.11 4.63
71 72 1.338973 GTTATGTCATCGTAGGCCGGA 59.661 52.381 5.05 0.00 37.11 5.14
72 73 1.067974 TGTTATGTCATCGTAGGCCGG 59.932 52.381 0.00 0.00 37.11 6.13
73 74 2.502213 TGTTATGTCATCGTAGGCCG 57.498 50.000 0.00 0.00 38.13 6.13
74 75 4.634443 AGTTTTGTTATGTCATCGTAGGCC 59.366 41.667 0.00 0.00 0.00 5.19
75 76 5.581085 AGAGTTTTGTTATGTCATCGTAGGC 59.419 40.000 0.00 0.00 0.00 3.93
76 77 7.596749 AAGAGTTTTGTTATGTCATCGTAGG 57.403 36.000 0.00 0.00 0.00 3.18
79 80 9.825972 CATTTAAGAGTTTTGTTATGTCATCGT 57.174 29.630 0.00 0.00 0.00 3.73
80 81 9.825972 ACATTTAAGAGTTTTGTTATGTCATCG 57.174 29.630 0.00 0.00 0.00 3.84
83 84 9.349713 AGGACATTTAAGAGTTTTGTTATGTCA 57.650 29.630 0.00 0.00 37.13 3.58
84 85 9.612620 CAGGACATTTAAGAGTTTTGTTATGTC 57.387 33.333 0.00 0.00 35.35 3.06
85 86 8.576442 CCAGGACATTTAAGAGTTTTGTTATGT 58.424 33.333 0.00 0.00 0.00 2.29
86 87 8.792633 TCCAGGACATTTAAGAGTTTTGTTATG 58.207 33.333 0.00 0.00 0.00 1.90
87 88 8.934023 TCCAGGACATTTAAGAGTTTTGTTAT 57.066 30.769 0.00 0.00 0.00 1.89
88 89 8.934023 ATCCAGGACATTTAAGAGTTTTGTTA 57.066 30.769 0.00 0.00 0.00 2.41
89 90 7.308589 CGATCCAGGACATTTAAGAGTTTTGTT 60.309 37.037 0.00 0.00 0.00 2.83
90 91 6.149474 CGATCCAGGACATTTAAGAGTTTTGT 59.851 38.462 0.00 0.00 0.00 2.83
91 92 6.371548 TCGATCCAGGACATTTAAGAGTTTTG 59.628 38.462 0.00 0.00 0.00 2.44
92 93 6.472887 TCGATCCAGGACATTTAAGAGTTTT 58.527 36.000 0.00 0.00 0.00 2.43
93 94 6.049955 TCGATCCAGGACATTTAAGAGTTT 57.950 37.500 0.00 0.00 0.00 2.66
94 95 5.677319 TCGATCCAGGACATTTAAGAGTT 57.323 39.130 0.00 0.00 0.00 3.01
95 96 5.363868 TCATCGATCCAGGACATTTAAGAGT 59.636 40.000 0.00 0.00 0.00 3.24
96 97 5.847304 TCATCGATCCAGGACATTTAAGAG 58.153 41.667 0.00 0.00 0.00 2.85
97 98 5.869649 TCATCGATCCAGGACATTTAAGA 57.130 39.130 0.00 0.00 0.00 2.10
98 99 6.072838 CCATTCATCGATCCAGGACATTTAAG 60.073 42.308 0.00 0.00 0.00 1.85
99 100 5.764686 CCATTCATCGATCCAGGACATTTAA 59.235 40.000 0.00 0.00 0.00 1.52
100 101 5.071653 TCCATTCATCGATCCAGGACATTTA 59.928 40.000 0.00 0.00 0.00 1.40
101 102 4.139786 CCATTCATCGATCCAGGACATTT 58.860 43.478 0.00 0.00 0.00 2.32
102 103 3.392285 TCCATTCATCGATCCAGGACATT 59.608 43.478 0.00 0.00 0.00 2.71
103 104 2.974794 TCCATTCATCGATCCAGGACAT 59.025 45.455 0.00 0.00 0.00 3.06
104 105 2.397597 TCCATTCATCGATCCAGGACA 58.602 47.619 0.00 0.00 0.00 4.02
105 106 3.475566 TTCCATTCATCGATCCAGGAC 57.524 47.619 0.00 0.00 0.00 3.85
106 107 4.502105 TTTTCCATTCATCGATCCAGGA 57.498 40.909 0.00 0.00 0.00 3.86
107 108 5.779529 ATTTTTCCATTCATCGATCCAGG 57.220 39.130 0.00 0.00 0.00 4.45
108 109 6.016860 TGCTATTTTTCCATTCATCGATCCAG 60.017 38.462 0.00 0.00 0.00 3.86
109 110 5.827267 TGCTATTTTTCCATTCATCGATCCA 59.173 36.000 0.00 0.00 0.00 3.41
110 111 6.205464 TCTGCTATTTTTCCATTCATCGATCC 59.795 38.462 0.00 0.00 0.00 3.36
111 112 7.194607 TCTGCTATTTTTCCATTCATCGATC 57.805 36.000 0.00 0.00 0.00 3.69
112 113 7.756395 ATCTGCTATTTTTCCATTCATCGAT 57.244 32.000 0.00 0.00 0.00 3.59
113 114 7.282901 TCAATCTGCTATTTTTCCATTCATCGA 59.717 33.333 0.00 0.00 0.00 3.59
114 115 7.420002 TCAATCTGCTATTTTTCCATTCATCG 58.580 34.615 0.00 0.00 0.00 3.84
115 116 9.760077 AATCAATCTGCTATTTTTCCATTCATC 57.240 29.630 0.00 0.00 0.00 2.92
121 122 9.241919 TGAAGTAATCAATCTGCTATTTTTCCA 57.758 29.630 0.00 0.00 34.30 3.53
122 123 9.508567 GTGAAGTAATCAATCTGCTATTTTTCC 57.491 33.333 0.00 0.00 40.50 3.13
124 125 9.846248 GTGTGAAGTAATCAATCTGCTATTTTT 57.154 29.630 0.00 0.00 40.50 1.94
125 126 9.236006 AGTGTGAAGTAATCAATCTGCTATTTT 57.764 29.630 0.00 0.00 40.50 1.82
126 127 8.798859 AGTGTGAAGTAATCAATCTGCTATTT 57.201 30.769 0.00 0.00 40.50 1.40
127 128 8.043113 TGAGTGTGAAGTAATCAATCTGCTATT 58.957 33.333 0.00 0.00 40.50 1.73
128 129 7.493971 GTGAGTGTGAAGTAATCAATCTGCTAT 59.506 37.037 0.00 0.00 40.50 2.97
129 130 6.813649 GTGAGTGTGAAGTAATCAATCTGCTA 59.186 38.462 0.00 0.00 40.50 3.49
130 131 5.641209 GTGAGTGTGAAGTAATCAATCTGCT 59.359 40.000 0.00 0.00 40.50 4.24
131 132 5.445142 CGTGAGTGTGAAGTAATCAATCTGC 60.445 44.000 0.00 0.00 40.50 4.26
132 133 5.863935 TCGTGAGTGTGAAGTAATCAATCTG 59.136 40.000 0.00 0.00 40.50 2.90
133 134 6.025749 TCGTGAGTGTGAAGTAATCAATCT 57.974 37.500 0.00 0.00 40.50 2.40
134 135 6.706055 TTCGTGAGTGTGAAGTAATCAATC 57.294 37.500 0.00 0.00 40.50 2.67
135 136 6.073222 GGTTTCGTGAGTGTGAAGTAATCAAT 60.073 38.462 0.00 0.00 40.50 2.57
136 137 5.235616 GGTTTCGTGAGTGTGAAGTAATCAA 59.764 40.000 0.00 0.00 40.50 2.57
137 138 4.748102 GGTTTCGTGAGTGTGAAGTAATCA 59.252 41.667 0.00 0.00 35.05 2.57
138 139 4.143389 CGGTTTCGTGAGTGTGAAGTAATC 60.143 45.833 0.00 0.00 0.00 1.75
139 140 3.739300 CGGTTTCGTGAGTGTGAAGTAAT 59.261 43.478 0.00 0.00 0.00 1.89
140 141 3.117794 CGGTTTCGTGAGTGTGAAGTAA 58.882 45.455 0.00 0.00 0.00 2.24
141 142 2.358582 TCGGTTTCGTGAGTGTGAAGTA 59.641 45.455 0.00 0.00 37.69 2.24
142 143 1.135527 TCGGTTTCGTGAGTGTGAAGT 59.864 47.619 0.00 0.00 37.69 3.01
143 144 1.787155 CTCGGTTTCGTGAGTGTGAAG 59.213 52.381 0.00 0.00 37.69 3.02
144 145 1.406180 TCTCGGTTTCGTGAGTGTGAA 59.594 47.619 0.00 0.00 34.54 3.18
145 146 1.026584 TCTCGGTTTCGTGAGTGTGA 58.973 50.000 0.00 0.00 34.54 3.58
146 147 1.787155 CTTCTCGGTTTCGTGAGTGTG 59.213 52.381 0.00 0.00 39.54 3.82
147 148 1.868519 GCTTCTCGGTTTCGTGAGTGT 60.869 52.381 0.00 0.00 39.54 3.55
148 149 0.784778 GCTTCTCGGTTTCGTGAGTG 59.215 55.000 0.00 0.00 39.54 3.51
149 150 0.674534 AGCTTCTCGGTTTCGTGAGT 59.325 50.000 0.00 0.00 39.54 3.41
150 151 2.631418 TAGCTTCTCGGTTTCGTGAG 57.369 50.000 0.00 0.00 39.54 3.51
151 152 3.374220 TTTAGCTTCTCGGTTTCGTGA 57.626 42.857 0.00 0.00 37.16 4.35
152 153 5.968387 ATATTTAGCTTCTCGGTTTCGTG 57.032 39.130 0.00 0.00 37.69 4.35
153 154 5.522824 GGAATATTTAGCTTCTCGGTTTCGT 59.477 40.000 0.00 0.00 37.69 3.85
154 155 5.753921 AGGAATATTTAGCTTCTCGGTTTCG 59.246 40.000 0.00 0.00 37.82 3.46
155 156 7.555306 AAGGAATATTTAGCTTCTCGGTTTC 57.445 36.000 0.00 0.00 0.00 2.78
156 157 7.939784 AAAGGAATATTTAGCTTCTCGGTTT 57.060 32.000 0.00 0.00 0.00 3.27
157 158 7.939784 AAAAGGAATATTTAGCTTCTCGGTT 57.060 32.000 0.00 0.00 0.00 4.44
158 159 7.610305 TGAAAAAGGAATATTTAGCTTCTCGGT 59.390 33.333 0.00 0.00 0.00 4.69
159 160 7.910683 GTGAAAAAGGAATATTTAGCTTCTCGG 59.089 37.037 0.00 0.00 0.00 4.63
160 161 7.636359 CGTGAAAAAGGAATATTTAGCTTCTCG 59.364 37.037 0.00 0.18 0.00 4.04
161 162 8.451748 ACGTGAAAAAGGAATATTTAGCTTCTC 58.548 33.333 0.00 0.00 0.00 2.87
162 163 8.237267 CACGTGAAAAAGGAATATTTAGCTTCT 58.763 33.333 10.90 0.00 0.00 2.85
163 164 7.008357 GCACGTGAAAAAGGAATATTTAGCTTC 59.992 37.037 22.23 0.00 0.00 3.86
164 165 6.806739 GCACGTGAAAAAGGAATATTTAGCTT 59.193 34.615 22.23 0.00 0.00 3.74
165 166 6.072175 TGCACGTGAAAAAGGAATATTTAGCT 60.072 34.615 22.23 0.00 0.00 3.32
166 167 6.033513 GTGCACGTGAAAAAGGAATATTTAGC 59.966 38.462 22.23 0.00 0.00 3.09
167 168 7.060633 GTGTGCACGTGAAAAAGGAATATTTAG 59.939 37.037 22.23 0.00 0.00 1.85
168 169 6.858993 GTGTGCACGTGAAAAAGGAATATTTA 59.141 34.615 22.23 0.00 0.00 1.40
169 170 5.689961 GTGTGCACGTGAAAAAGGAATATTT 59.310 36.000 22.23 0.00 0.00 1.40
170 171 5.219633 GTGTGCACGTGAAAAAGGAATATT 58.780 37.500 22.23 0.00 0.00 1.28
171 172 4.277174 TGTGTGCACGTGAAAAAGGAATAT 59.723 37.500 22.23 0.00 0.00 1.28
172 173 3.628032 TGTGTGCACGTGAAAAAGGAATA 59.372 39.130 22.23 0.00 0.00 1.75
173 174 2.425312 TGTGTGCACGTGAAAAAGGAAT 59.575 40.909 22.23 0.00 0.00 3.01
174 175 1.813178 TGTGTGCACGTGAAAAAGGAA 59.187 42.857 22.23 0.00 0.00 3.36
175 176 1.131504 GTGTGTGCACGTGAAAAAGGA 59.868 47.619 22.23 0.00 35.75 3.36
176 177 1.544686 GTGTGTGCACGTGAAAAAGG 58.455 50.000 22.23 0.00 35.75 3.11
186 187 2.032030 ACAAGCTAAATCGTGTGTGCAC 60.032 45.455 10.75 10.75 41.97 4.57
187 188 2.217750 ACAAGCTAAATCGTGTGTGCA 58.782 42.857 0.00 0.00 0.00 4.57
188 189 2.969443 ACAAGCTAAATCGTGTGTGC 57.031 45.000 0.00 0.00 0.00 4.57
189 190 4.091509 GGAGTACAAGCTAAATCGTGTGTG 59.908 45.833 0.00 0.00 31.49 3.82
190 191 4.243270 GGAGTACAAGCTAAATCGTGTGT 58.757 43.478 0.00 0.00 31.49 3.72
191 192 3.617263 GGGAGTACAAGCTAAATCGTGTG 59.383 47.826 0.00 0.00 31.49 3.82
192 193 3.514309 AGGGAGTACAAGCTAAATCGTGT 59.486 43.478 0.00 0.00 33.49 4.49
193 194 4.113354 GAGGGAGTACAAGCTAAATCGTG 58.887 47.826 0.00 0.00 0.00 4.35
194 195 3.132467 GGAGGGAGTACAAGCTAAATCGT 59.868 47.826 0.00 0.00 0.00 3.73
195 196 3.718815 GGAGGGAGTACAAGCTAAATCG 58.281 50.000 0.00 0.00 0.00 3.34
196 197 3.718815 CGGAGGGAGTACAAGCTAAATC 58.281 50.000 0.00 0.00 0.00 2.17
197 198 3.821421 CGGAGGGAGTACAAGCTAAAT 57.179 47.619 0.00 0.00 0.00 1.40
213 214 2.739913 TGCGAACTAAAAATGACCGGAG 59.260 45.455 9.46 0.00 0.00 4.63
214 215 2.768698 TGCGAACTAAAAATGACCGGA 58.231 42.857 9.46 0.00 0.00 5.14
215 216 3.757745 ATGCGAACTAAAAATGACCGG 57.242 42.857 0.00 0.00 0.00 5.28
216 217 7.847487 TCTTATATGCGAACTAAAAATGACCG 58.153 34.615 0.00 0.00 0.00 4.79
224 225 9.594478 TCAGACAAATCTTATATGCGAACTAAA 57.406 29.630 0.00 0.00 30.42 1.85
225 226 9.594478 TTCAGACAAATCTTATATGCGAACTAA 57.406 29.630 0.00 0.00 30.42 2.24
226 227 9.249457 CTTCAGACAAATCTTATATGCGAACTA 57.751 33.333 0.00 0.00 30.42 2.24
227 228 7.766278 ACTTCAGACAAATCTTATATGCGAACT 59.234 33.333 0.00 0.00 30.42 3.01
228 229 7.910304 ACTTCAGACAAATCTTATATGCGAAC 58.090 34.615 0.00 0.00 30.42 3.95
229 230 7.763985 TGACTTCAGACAAATCTTATATGCGAA 59.236 33.333 0.00 0.00 30.42 4.70
230 231 7.264947 TGACTTCAGACAAATCTTATATGCGA 58.735 34.615 0.00 0.00 30.42 5.10
231 232 7.468922 TGACTTCAGACAAATCTTATATGCG 57.531 36.000 0.00 0.00 30.42 4.73
232 233 9.495754 GTTTGACTTCAGACAAATCTTATATGC 57.504 33.333 7.54 0.00 40.50 3.14
236 237 8.446273 CGATGTTTGACTTCAGACAAATCTTAT 58.554 33.333 6.68 2.35 42.92 1.73
237 238 7.441157 ACGATGTTTGACTTCAGACAAATCTTA 59.559 33.333 6.68 0.00 42.92 2.10
238 239 6.260936 ACGATGTTTGACTTCAGACAAATCTT 59.739 34.615 6.68 0.00 42.92 2.40
239 240 5.760253 ACGATGTTTGACTTCAGACAAATCT 59.240 36.000 6.68 0.10 42.92 2.40
240 241 5.990408 ACGATGTTTGACTTCAGACAAATC 58.010 37.500 6.68 1.20 42.92 2.17
241 242 7.490962 TTACGATGTTTGACTTCAGACAAAT 57.509 32.000 6.68 0.00 42.92 2.32
242 243 6.912203 TTACGATGTTTGACTTCAGACAAA 57.088 33.333 6.68 0.00 42.92 2.83
243 244 6.537301 AGTTTACGATGTTTGACTTCAGACAA 59.463 34.615 6.68 0.00 42.92 3.18
244 245 6.046593 AGTTTACGATGTTTGACTTCAGACA 58.953 36.000 5.17 5.17 43.64 3.41
245 246 6.526566 AGTTTACGATGTTTGACTTCAGAC 57.473 37.500 0.00 0.00 0.00 3.51
246 247 7.279090 TCAAAGTTTACGATGTTTGACTTCAGA 59.721 33.333 0.00 0.00 34.72 3.27
247 248 7.406553 TCAAAGTTTACGATGTTTGACTTCAG 58.593 34.615 0.00 0.00 34.72 3.02
248 249 7.310072 TCAAAGTTTACGATGTTTGACTTCA 57.690 32.000 0.00 0.00 34.72 3.02
253 254 6.438259 TTGGTCAAAGTTTACGATGTTTGA 57.562 33.333 0.00 0.00 36.74 2.69
254 255 6.732181 CTTGGTCAAAGTTTACGATGTTTG 57.268 37.500 0.00 0.00 0.00 2.93
293 294 8.959548 TGTTGATTTCACATTATGAATGCTAGT 58.040 29.630 0.00 0.00 46.80 2.57
294 295 9.791820 TTGTTGATTTCACATTATGAATGCTAG 57.208 29.630 0.00 0.00 46.80 3.42
295 296 9.571810 GTTGTTGATTTCACATTATGAATGCTA 57.428 29.630 0.00 0.00 46.80 3.49
296 297 8.089597 TGTTGTTGATTTCACATTATGAATGCT 58.910 29.630 0.00 0.00 46.80 3.79
297 298 8.242085 TGTTGTTGATTTCACATTATGAATGC 57.758 30.769 0.00 0.00 46.80 3.56
305 306 8.222433 CGCATTTAATGTTGTTGATTTCACATT 58.778 29.630 6.81 0.00 0.00 2.71
306 307 7.384660 ACGCATTTAATGTTGTTGATTTCACAT 59.615 29.630 6.81 0.00 0.00 3.21
307 308 6.699204 ACGCATTTAATGTTGTTGATTTCACA 59.301 30.769 6.81 0.00 0.00 3.58
308 309 7.096271 TGACGCATTTAATGTTGTTGATTTCAC 60.096 33.333 6.81 0.00 0.00 3.18
309 310 6.920210 TGACGCATTTAATGTTGTTGATTTCA 59.080 30.769 6.81 0.00 0.00 2.69
310 311 7.332003 TGACGCATTTAATGTTGTTGATTTC 57.668 32.000 6.81 0.00 0.00 2.17
311 312 7.598118 TCATGACGCATTTAATGTTGTTGATTT 59.402 29.630 6.81 0.00 0.00 2.17
312 313 7.062138 GTCATGACGCATTTAATGTTGTTGATT 59.938 33.333 10.69 0.00 0.00 2.57
313 314 6.527722 GTCATGACGCATTTAATGTTGTTGAT 59.472 34.615 10.69 1.09 0.00 2.57
314 315 5.855925 GTCATGACGCATTTAATGTTGTTGA 59.144 36.000 10.69 5.18 0.00 3.18
315 316 5.858049 AGTCATGACGCATTTAATGTTGTTG 59.142 36.000 19.85 3.20 36.20 3.33
316 317 6.012658 AGTCATGACGCATTTAATGTTGTT 57.987 33.333 19.85 0.00 36.20 2.83
317 318 5.627499 AGTCATGACGCATTTAATGTTGT 57.373 34.783 19.85 5.83 36.20 3.32
318 319 6.932901 AAAGTCATGACGCATTTAATGTTG 57.067 33.333 19.85 2.71 36.20 3.33
319 320 9.638239 AATTAAAGTCATGACGCATTTAATGTT 57.362 25.926 27.72 18.82 36.60 2.71
320 321 9.638239 AAATTAAAGTCATGACGCATTTAATGT 57.362 25.926 27.72 23.62 36.60 2.71
323 324 9.684448 TGAAAATTAAAGTCATGACGCATTTAA 57.316 25.926 23.10 23.10 36.20 1.52
324 325 9.853555 ATGAAAATTAAAGTCATGACGCATTTA 57.146 25.926 19.85 15.53 36.20 1.40
325 326 8.761575 ATGAAAATTAAAGTCATGACGCATTT 57.238 26.923 19.85 16.47 36.20 2.32
328 329 9.288124 CAATATGAAAATTAAAGTCATGACGCA 57.712 29.630 19.85 6.59 34.01 5.24
329 330 9.289303 ACAATATGAAAATTAAAGTCATGACGC 57.711 29.630 19.85 0.00 34.01 5.19
416 417 9.495754 GCATATAAGAATTGTCTGAAGTCAAAC 57.504 33.333 0.00 0.00 33.05 2.93
417 418 9.230122 TGCATATAAGAATTGTCTGAAGTCAAA 57.770 29.630 0.00 0.00 33.05 2.69
418 419 8.791327 TGCATATAAGAATTGTCTGAAGTCAA 57.209 30.769 0.00 0.00 33.05 3.18
419 420 8.260114 TCTGCATATAAGAATTGTCTGAAGTCA 58.740 33.333 0.00 0.00 33.05 3.41
420 421 8.654230 TCTGCATATAAGAATTGTCTGAAGTC 57.346 34.615 0.00 0.00 33.05 3.01
421 422 8.263640 ACTCTGCATATAAGAATTGTCTGAAGT 58.736 33.333 0.00 0.00 33.05 3.01
422 423 8.659925 ACTCTGCATATAAGAATTGTCTGAAG 57.340 34.615 0.00 0.00 33.05 3.02
428 429 9.988350 CGTTTTTACTCTGCATATAAGAATTGT 57.012 29.630 0.00 0.00 0.00 2.71
431 432 8.827677 GGTCGTTTTTACTCTGCATATAAGAAT 58.172 33.333 0.00 0.00 0.00 2.40
432 433 7.009815 CGGTCGTTTTTACTCTGCATATAAGAA 59.990 37.037 0.00 0.00 0.00 2.52
433 434 6.474427 CGGTCGTTTTTACTCTGCATATAAGA 59.526 38.462 0.00 0.00 0.00 2.10
434 435 6.292168 CCGGTCGTTTTTACTCTGCATATAAG 60.292 42.308 0.00 0.00 0.00 1.73
435 436 5.521010 CCGGTCGTTTTTACTCTGCATATAA 59.479 40.000 0.00 0.00 0.00 0.98
436 437 5.045215 CCGGTCGTTTTTACTCTGCATATA 58.955 41.667 0.00 0.00 0.00 0.86
437 438 3.869246 CCGGTCGTTTTTACTCTGCATAT 59.131 43.478 0.00 0.00 0.00 1.78
438 439 3.056678 TCCGGTCGTTTTTACTCTGCATA 60.057 43.478 0.00 0.00 0.00 3.14
439 440 2.073816 CCGGTCGTTTTTACTCTGCAT 58.926 47.619 0.00 0.00 0.00 3.96
440 441 1.068895 TCCGGTCGTTTTTACTCTGCA 59.931 47.619 0.00 0.00 0.00 4.41
441 442 1.725164 CTCCGGTCGTTTTTACTCTGC 59.275 52.381 0.00 0.00 0.00 4.26
442 443 2.334838 CCTCCGGTCGTTTTTACTCTG 58.665 52.381 0.00 0.00 0.00 3.35
443 444 1.274447 CCCTCCGGTCGTTTTTACTCT 59.726 52.381 0.00 0.00 0.00 3.24
444 445 1.273327 TCCCTCCGGTCGTTTTTACTC 59.727 52.381 0.00 0.00 0.00 2.59
445 446 1.274447 CTCCCTCCGGTCGTTTTTACT 59.726 52.381 0.00 0.00 0.00 2.24
446 447 1.001293 ACTCCCTCCGGTCGTTTTTAC 59.999 52.381 0.00 0.00 0.00 2.01
447 448 1.341080 ACTCCCTCCGGTCGTTTTTA 58.659 50.000 0.00 0.00 0.00 1.52
448 449 1.001293 GTACTCCCTCCGGTCGTTTTT 59.999 52.381 0.00 0.00 0.00 1.94
449 450 0.605083 GTACTCCCTCCGGTCGTTTT 59.395 55.000 0.00 0.00 0.00 2.43
450 451 0.540365 TGTACTCCCTCCGGTCGTTT 60.540 55.000 0.00 0.00 0.00 3.60
451 452 0.324091 ATGTACTCCCTCCGGTCGTT 60.324 55.000 0.00 0.00 0.00 3.85
452 453 1.035932 CATGTACTCCCTCCGGTCGT 61.036 60.000 0.00 0.00 0.00 4.34
453 454 1.035932 ACATGTACTCCCTCCGGTCG 61.036 60.000 0.00 0.00 0.00 4.79
454 455 2.062971 TACATGTACTCCCTCCGGTC 57.937 55.000 0.08 0.00 0.00 4.79
455 456 2.105766 GTTACATGTACTCCCTCCGGT 58.894 52.381 4.68 0.00 0.00 5.28
456 457 1.411612 GGTTACATGTACTCCCTCCGG 59.588 57.143 4.68 0.00 0.00 5.14
457 458 2.361438 GAGGTTACATGTACTCCCTCCG 59.639 54.545 23.19 0.00 33.85 4.63
462 463 2.105766 ACGGGAGGTTACATGTACTCC 58.894 52.381 24.66 24.66 46.85 3.85
463 464 3.518590 CAACGGGAGGTTACATGTACTC 58.481 50.000 4.68 9.78 36.49 2.59
464 465 2.354403 GCAACGGGAGGTTACATGTACT 60.354 50.000 4.68 0.00 36.49 2.73
465 466 2.004733 GCAACGGGAGGTTACATGTAC 58.995 52.381 4.68 1.11 36.49 2.90
466 467 1.624312 TGCAACGGGAGGTTACATGTA 59.376 47.619 0.08 0.08 36.49 2.29
467 468 0.398696 TGCAACGGGAGGTTACATGT 59.601 50.000 2.69 2.69 36.49 3.21
468 469 1.199097 GTTGCAACGGGAGGTTACATG 59.801 52.381 14.90 0.00 36.49 3.21
469 470 1.530323 GTTGCAACGGGAGGTTACAT 58.470 50.000 14.90 0.00 36.49 2.29
470 471 3.009612 GTTGCAACGGGAGGTTACA 57.990 52.632 14.90 0.00 36.49 2.41
481 482 0.102844 ATATGCCCATGCGTTGCAAC 59.897 50.000 19.89 19.89 43.62 4.17
482 483 0.102663 CATATGCCCATGCGTTGCAA 59.897 50.000 0.00 0.00 43.62 4.08
483 484 1.036481 ACATATGCCCATGCGTTGCA 61.036 50.000 1.58 2.57 44.86 4.08
484 485 0.595567 CACATATGCCCATGCGTTGC 60.596 55.000 1.58 0.00 41.78 4.17
485 486 0.595567 GCACATATGCCCATGCGTTG 60.596 55.000 1.58 0.00 46.97 4.10
486 487 1.735360 GCACATATGCCCATGCGTT 59.265 52.632 1.58 0.00 46.97 4.84
487 488 3.435590 GCACATATGCCCATGCGT 58.564 55.556 1.58 0.00 46.97 5.24
573 574 4.457496 CGGCCGATGGACAGTGCT 62.457 66.667 24.07 0.00 0.00 4.40
585 586 2.434134 CGAAAGAACTCGACGGCCG 61.434 63.158 26.86 26.86 41.44 6.13
586 587 1.080974 TCGAAAGAACTCGACGGCC 60.081 57.895 0.00 0.00 42.69 6.13
750 752 1.588674 TGAGCATTTTCGGTTCGTGT 58.411 45.000 0.00 0.00 0.00 4.49
753 755 1.535462 AGGTTGAGCATTTTCGGTTCG 59.465 47.619 0.00 0.00 0.00 3.95
850 857 0.528684 GAGCGAGATTTGGACGGGAG 60.529 60.000 0.00 0.00 0.00 4.30
930 938 1.070105 ACTGTTTAGCCGCCGTTGA 59.930 52.632 0.00 0.00 0.00 3.18
1105 1113 2.184579 GTGCAGGGCGTAGAGGAC 59.815 66.667 0.00 0.00 0.00 3.85
1155 1163 4.081030 GCGGCCATGATGCGATCG 62.081 66.667 11.69 11.69 0.00 3.69
1203 1211 0.663269 GCGGCGTCGATGATGTATGA 60.663 55.000 16.53 0.00 39.00 2.15
1296 1304 4.814294 GATGTCGGCGGCGTCCTT 62.814 66.667 31.06 19.38 0.00 3.36
1373 1381 3.182472 ATCCTCGCCGTCGTCATCG 62.182 63.158 0.00 0.00 36.96 3.84
1375 1383 2.413351 CATCCTCGCCGTCGTCAT 59.587 61.111 0.00 0.00 36.96 3.06
1420 1521 2.362503 TGGCATCCTCTCCGTCGT 60.363 61.111 0.00 0.00 0.00 4.34
1427 1528 2.606587 GGTGGTGGTGGCATCCTCT 61.607 63.158 0.00 0.00 0.00 3.69
1971 2090 0.313987 CGATGTAGTATGGCTGCCGA 59.686 55.000 14.98 0.93 0.00 5.54
2016 2135 5.677319 TCCCGTATGAGAAGAAGATGTTT 57.323 39.130 0.00 0.00 0.00 2.83
2031 2150 2.420043 CCGAACGCCATCCCGTAT 59.580 61.111 0.00 0.00 41.16 3.06
2730 2852 2.125912 AGCACGATGACGCTGTCC 60.126 61.111 6.30 0.00 43.96 4.02
2763 2885 0.987613 TTACCCGGTCCCATAACCCC 60.988 60.000 0.00 0.00 35.79 4.95
2807 2929 8.690884 CCCCAATCCTATCGATATATATGCTAG 58.309 40.741 5.40 0.00 0.00 3.42
2808 2930 7.124298 GCCCCAATCCTATCGATATATATGCTA 59.876 40.741 5.40 0.00 0.00 3.49
2809 2931 6.070538 GCCCCAATCCTATCGATATATATGCT 60.071 42.308 5.40 0.00 0.00 3.79
2811 2933 7.244886 TGCCCCAATCCTATCGATATATATG 57.755 40.000 5.40 3.88 0.00 1.78
2812 2934 8.324306 CAATGCCCCAATCCTATCGATATATAT 58.676 37.037 5.40 0.00 0.00 0.86
2813 2935 7.292356 ACAATGCCCCAATCCTATCGATATATA 59.708 37.037 5.40 0.00 0.00 0.86
2815 2937 5.428457 ACAATGCCCCAATCCTATCGATATA 59.572 40.000 5.40 0.00 0.00 0.86
2816 2938 4.228210 ACAATGCCCCAATCCTATCGATAT 59.772 41.667 5.40 0.00 0.00 1.63
2818 2940 2.376518 ACAATGCCCCAATCCTATCGAT 59.623 45.455 2.16 2.16 0.00 3.59
2819 2941 1.774254 ACAATGCCCCAATCCTATCGA 59.226 47.619 0.00 0.00 0.00 3.59
2820 2942 2.276732 ACAATGCCCCAATCCTATCG 57.723 50.000 0.00 0.00 0.00 2.92
2821 2943 2.629617 CCAACAATGCCCCAATCCTATC 59.370 50.000 0.00 0.00 0.00 2.08
2824 2946 0.116940 ACCAACAATGCCCCAATCCT 59.883 50.000 0.00 0.00 0.00 3.24
2825 2947 1.756538 CTACCAACAATGCCCCAATCC 59.243 52.381 0.00 0.00 0.00 3.01
2826 2948 1.136891 GCTACCAACAATGCCCCAATC 59.863 52.381 0.00 0.00 0.00 2.67
2827 2949 1.194218 GCTACCAACAATGCCCCAAT 58.806 50.000 0.00 0.00 0.00 3.16
2830 2952 0.687427 ATGGCTACCAACAATGCCCC 60.687 55.000 0.00 0.00 44.32 5.80
2831 2953 1.681264 GTATGGCTACCAACAATGCCC 59.319 52.381 0.00 0.00 44.32 5.36
2832 2954 2.358898 CAGTATGGCTACCAACAATGCC 59.641 50.000 0.00 0.00 45.10 4.40
2833 2955 3.065371 GTCAGTATGGCTACCAACAATGC 59.935 47.826 0.00 0.00 38.03 3.56
2845 2967 1.409064 TCGATCACCAGTCAGTATGGC 59.591 52.381 0.00 0.00 44.67 4.40
2846 2968 5.183904 TCATATCGATCACCAGTCAGTATGG 59.816 44.000 0.00 0.00 43.87 2.74
2847 2969 6.259550 TCATATCGATCACCAGTCAGTATG 57.740 41.667 0.00 0.00 37.54 2.39
2888 3023 2.361610 CACCCGGCAGCAATTCCT 60.362 61.111 0.00 0.00 0.00 3.36
2920 3055 1.228769 GTTCCCGCCCCCTTCTTTT 60.229 57.895 0.00 0.00 0.00 2.27
2956 3091 1.064003 AGTCCTTGCATACACCCACA 58.936 50.000 0.00 0.00 0.00 4.17
3034 3170 6.446781 AGAAACTTTGATCACCTATGCATG 57.553 37.500 10.16 0.00 0.00 4.06
3099 3235 4.839668 CTAGGCATCCTAGTGTCACTAC 57.160 50.000 8.70 0.00 46.15 2.73
3110 3246 2.093447 GTGTGCTGTTACTAGGCATCCT 60.093 50.000 0.00 0.00 38.27 3.24
3216 3374 6.312141 TGGAACCATTGATATCTCTGTCAA 57.688 37.500 3.98 0.00 36.98 3.18
3230 3388 7.602265 GCAAATTTGTTACTACATGGAACCATT 59.398 33.333 19.03 0.00 33.90 3.16
3261 3422 0.179094 TGTTCGTCCTCGCACACTTT 60.179 50.000 0.00 0.00 38.15 2.66
3302 3464 6.341316 TCTAAGTGCATGAAGATCCTGTAAC 58.659 40.000 0.00 0.00 0.00 2.50
3324 3486 6.900186 TCTCTTGTTATCTCCATCTTTCCTCT 59.100 38.462 0.00 0.00 0.00 3.69
3325 3487 7.118496 TCTCTTGTTATCTCCATCTTTCCTC 57.882 40.000 0.00 0.00 0.00 3.71
3380 3544 0.037326 CCTGTGCTTCTGCTTACGGA 60.037 55.000 0.00 0.00 40.48 4.69
3403 3567 2.957402 AAGAGCAACATGGTTCCAGA 57.043 45.000 0.00 0.00 0.00 3.86
3419 3584 8.873830 CGCATAAGAAAAACTTCAGAGATAAGA 58.126 33.333 0.00 0.00 39.72 2.10
3915 4080 4.760047 CACCGACGCCCCCAAGAG 62.760 72.222 0.00 0.00 0.00 2.85
3922 4087 4.324991 AAACTCCCACCGACGCCC 62.325 66.667 0.00 0.00 0.00 6.13
3923 4088 2.741211 GAAACTCCCACCGACGCC 60.741 66.667 0.00 0.00 0.00 5.68
3924 4089 3.110178 CGAAACTCCCACCGACGC 61.110 66.667 0.00 0.00 0.00 5.19
3925 4090 2.431942 CCGAAACTCCCACCGACG 60.432 66.667 0.00 0.00 0.00 5.12
3926 4091 2.741211 GCCGAAACTCCCACCGAC 60.741 66.667 0.00 0.00 0.00 4.79
3927 4092 4.367023 CGCCGAAACTCCCACCGA 62.367 66.667 0.00 0.00 0.00 4.69
3928 4093 3.869473 TTCGCCGAAACTCCCACCG 62.869 63.158 0.00 0.00 0.00 4.94
3929 4094 1.366854 GATTCGCCGAAACTCCCACC 61.367 60.000 2.60 0.00 0.00 4.61
3930 4095 1.693083 CGATTCGCCGAAACTCCCAC 61.693 60.000 2.60 0.00 0.00 4.61
3931 4096 1.447140 CGATTCGCCGAAACTCCCA 60.447 57.895 2.60 0.00 0.00 4.37
3932 4097 1.447314 ACGATTCGCCGAAACTCCC 60.447 57.895 2.60 0.00 0.00 4.30
3933 4098 1.708027 CACGATTCGCCGAAACTCC 59.292 57.895 2.60 0.00 0.00 3.85
3934 4099 1.058903 GCACGATTCGCCGAAACTC 59.941 57.895 2.60 0.00 0.00 3.01
3935 4100 1.352156 GAGCACGATTCGCCGAAACT 61.352 55.000 2.60 0.00 0.00 2.66
3936 4101 1.058903 GAGCACGATTCGCCGAAAC 59.941 57.895 2.60 0.00 0.00 2.78
3937 4102 1.076533 GAGAGCACGATTCGCCGAAA 61.077 55.000 2.60 0.00 0.00 3.46
3938 4103 1.516386 GAGAGCACGATTCGCCGAA 60.516 57.895 0.33 0.33 0.00 4.30
3939 4104 2.102357 GAGAGCACGATTCGCCGA 59.898 61.111 5.86 0.00 0.00 5.54
3940 4105 2.956964 GGAGAGCACGATTCGCCG 60.957 66.667 5.86 0.00 0.00 6.46
3941 4106 2.167861 GTGGAGAGCACGATTCGCC 61.168 63.158 5.86 0.00 35.38 5.54
3942 4107 0.807667 ATGTGGAGAGCACGATTCGC 60.808 55.000 5.86 0.00 0.00 4.70
3943 4108 0.926155 CATGTGGAGAGCACGATTCG 59.074 55.000 4.14 4.14 0.00 3.34
3944 4109 1.929836 GACATGTGGAGAGCACGATTC 59.070 52.381 1.15 0.00 0.00 2.52
3945 4110 1.406069 GGACATGTGGAGAGCACGATT 60.406 52.381 1.15 0.00 0.00 3.34
3946 4111 0.176680 GGACATGTGGAGAGCACGAT 59.823 55.000 1.15 0.00 0.00 3.73
3947 4112 0.900182 AGGACATGTGGAGAGCACGA 60.900 55.000 1.15 0.00 0.00 4.35
3948 4113 0.036952 AAGGACATGTGGAGAGCACG 60.037 55.000 1.15 0.00 0.00 5.34
3949 4114 2.191128 AAAGGACATGTGGAGAGCAC 57.809 50.000 1.15 0.00 0.00 4.40
3950 4115 2.957402 AAAAGGACATGTGGAGAGCA 57.043 45.000 1.15 0.00 0.00 4.26
3951 4116 3.416156 AGAAAAAGGACATGTGGAGAGC 58.584 45.455 1.15 0.00 0.00 4.09
3952 4117 4.217118 CCAAGAAAAAGGACATGTGGAGAG 59.783 45.833 1.15 0.00 0.00 3.20
3953 4118 4.144297 CCAAGAAAAAGGACATGTGGAGA 58.856 43.478 1.15 0.00 0.00 3.71
3954 4119 3.305608 GCCAAGAAAAAGGACATGTGGAG 60.306 47.826 1.15 0.00 0.00 3.86
3955 4120 2.627699 GCCAAGAAAAAGGACATGTGGA 59.372 45.455 1.15 0.00 0.00 4.02
3956 4121 2.289010 GGCCAAGAAAAAGGACATGTGG 60.289 50.000 1.15 0.00 31.39 4.17
3957 4122 2.289010 GGGCCAAGAAAAAGGACATGTG 60.289 50.000 1.15 0.00 33.29 3.21
3958 4123 1.970640 GGGCCAAGAAAAAGGACATGT 59.029 47.619 4.39 0.00 33.29 3.21
3959 4124 1.969923 TGGGCCAAGAAAAAGGACATG 59.030 47.619 2.13 0.00 33.29 3.21
3960 4125 1.970640 GTGGGCCAAGAAAAAGGACAT 59.029 47.619 8.40 0.00 33.29 3.06
3961 4126 1.063266 AGTGGGCCAAGAAAAAGGACA 60.063 47.619 8.40 0.00 33.29 4.02
3962 4127 1.704641 AGTGGGCCAAGAAAAAGGAC 58.295 50.000 8.40 0.00 0.00 3.85
3963 4128 2.470057 AAGTGGGCCAAGAAAAAGGA 57.530 45.000 8.40 0.00 0.00 3.36
3964 4129 4.283212 TGATTAAGTGGGCCAAGAAAAAGG 59.717 41.667 8.40 0.00 0.00 3.11
3965 4130 5.467035 TGATTAAGTGGGCCAAGAAAAAG 57.533 39.130 8.40 0.00 0.00 2.27
3966 4131 6.432403 AATGATTAAGTGGGCCAAGAAAAA 57.568 33.333 8.40 0.00 0.00 1.94
3967 4132 6.432403 AAATGATTAAGTGGGCCAAGAAAA 57.568 33.333 8.40 0.37 0.00 2.29
3968 4133 5.046663 GGAAATGATTAAGTGGGCCAAGAAA 60.047 40.000 8.40 2.49 0.00 2.52
3969 4134 4.466015 GGAAATGATTAAGTGGGCCAAGAA 59.534 41.667 8.40 2.64 0.00 2.52
3970 4135 4.023291 GGAAATGATTAAGTGGGCCAAGA 58.977 43.478 8.40 0.00 0.00 3.02
3971 4136 4.026052 AGGAAATGATTAAGTGGGCCAAG 58.974 43.478 8.40 0.00 0.00 3.61
3972 4137 4.059773 AGGAAATGATTAAGTGGGCCAA 57.940 40.909 8.40 0.00 0.00 4.52
3973 4138 3.756082 AGGAAATGATTAAGTGGGCCA 57.244 42.857 0.00 0.00 0.00 5.36
3974 4139 4.655762 GAAGGAAATGATTAAGTGGGCC 57.344 45.455 0.00 0.00 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.