Multiple sequence alignment - TraesCS6D01G238800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G238800 chr6D 100.000 5268 0 0 1 5268 339082031 339087298 0.000000e+00 9729.0
1 TraesCS6D01G238800 chr6D 86.501 363 40 8 7 364 339003302 339003660 1.780000e-104 390.0
2 TraesCS6D01G238800 chr6A 93.914 2662 124 18 1 2637 479725247 479727895 0.000000e+00 3984.0
3 TraesCS6D01G238800 chr6A 94.814 2121 68 19 2641 4740 479727964 479730063 0.000000e+00 3269.0
4 TraesCS6D01G238800 chr6B 94.137 1842 94 6 2 1834 481274314 481272478 0.000000e+00 2791.0
5 TraesCS6D01G238800 chr6B 90.850 1683 91 29 3149 4788 481268352 481266690 0.000000e+00 2196.0
6 TraesCS6D01G238800 chr6B 86.857 525 38 8 1820 2317 481269819 481269299 4.610000e-155 558.0
7 TraesCS6D01G238800 chr6B 88.950 362 28 7 2794 3150 481268788 481268434 2.250000e-118 436.0
8 TraesCS6D01G238800 chr6B 88.427 337 29 5 2309 2637 481269196 481268862 1.060000e-106 398.0
9 TraesCS6D01G238800 chr6B 86.027 365 43 7 7 367 481364711 481364351 8.280000e-103 385.0
10 TraesCS6D01G238800 chr6B 90.816 196 15 3 4784 4977 481264980 481264786 5.230000e-65 259.0
11 TraesCS6D01G238800 chr6B 89.474 76 2 1 2681 2750 481268864 481268789 2.020000e-14 91.6
12 TraesCS6D01G238800 chr3D 75.958 287 57 11 4980 5262 596878193 596878471 2.560000e-28 137.0
13 TraesCS6D01G238800 chr3D 84.615 91 9 4 4652 4741 536424080 536423994 9.400000e-13 86.1
14 TraesCS6D01G238800 chr3D 95.833 48 2 0 2638 2685 225865122 225865075 1.570000e-10 78.7
15 TraesCS6D01G238800 chr7A 75.540 278 56 10 4988 5262 272496409 272496677 5.540000e-25 126.0
16 TraesCS6D01G238800 chr7A 94.000 50 3 0 2641 2690 724917295 724917246 5.660000e-10 76.8
17 TraesCS6D01G238800 chr2B 79.290 169 25 9 5036 5201 281273385 281273546 5.580000e-20 110.0
18 TraesCS6D01G238800 chr2B 100.000 42 0 0 2641 2682 372268356 372268397 1.570000e-10 78.7
19 TraesCS6D01G238800 chr2B 100.000 33 0 0 4734 4766 182568142 182568174 1.580000e-05 62.1
20 TraesCS6D01G238800 chr7B 86.667 90 9 3 4652 4741 573022032 573022118 4.340000e-16 97.1
21 TraesCS6D01G238800 chr3B 97.872 47 1 0 2638 2684 40487339 40487293 1.220000e-11 82.4
22 TraesCS6D01G238800 chr4A 83.696 92 8 5 4651 4741 486471272 486471357 4.370000e-11 80.5
23 TraesCS6D01G238800 chr1A 100.000 43 0 0 2641 2683 104197440 104197398 4.370000e-11 80.5
24 TraesCS6D01G238800 chr7D 100.000 42 0 0 2641 2682 389078183 389078224 1.570000e-10 78.7
25 TraesCS6D01G238800 chr7D 97.619 42 1 0 2641 2682 28032439 28032480 7.320000e-09 73.1
26 TraesCS6D01G238800 chr3A 92.157 51 4 0 2641 2691 383095513 383095463 7.320000e-09 73.1
27 TraesCS6D01G238800 chr3A 100.000 28 0 0 4739 4766 146203095 146203122 1.000000e-02 52.8
28 TraesCS6D01G238800 chr5D 100.000 29 0 0 4738 4766 447689039 447689011 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G238800 chr6D 339082031 339087298 5267 False 9729.000000 9729 100.000000 1 5268 1 chr6D.!!$F2 5267
1 TraesCS6D01G238800 chr6A 479725247 479730063 4816 False 3626.500000 3984 94.364000 1 4740 2 chr6A.!!$F1 4739
2 TraesCS6D01G238800 chr6B 481264786 481274314 9528 True 961.371429 2791 89.930143 2 4977 7 chr6B.!!$R2 4975

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.181350 GCACGATCCTTCTTGGGGAT 59.819 55.000 0.00 0.0 45.23 3.85 F
610 615 0.323629 GACGGATGTCCAAACTCCCA 59.676 55.000 0.00 0.0 39.30 4.37 F
1495 1507 1.880646 GCTTTAAGCTCCGGTTGTCCA 60.881 52.381 10.01 0.0 38.45 4.02 F
2570 5404 2.019984 CTATCTTGGAAAGCAGGTGCC 58.980 52.381 0.00 0.0 45.70 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1948 4633 2.334977 TGGTAAAGCTCTGGGAAGTGA 58.665 47.619 0.00 0.0 0.00 3.41 R
2298 5014 0.320858 TGTACAATTTCCGCCGAGCA 60.321 50.000 0.00 0.0 0.00 4.26 R
2752 5658 1.099879 GCACAGGGCATCCAGATCAC 61.100 60.000 0.00 0.0 43.97 3.06 R
4273 7286 1.670015 CTCTGTGCAGACTGCTCCA 59.330 57.895 26.94 20.9 45.31 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.225497 GGCACGATCCTTCTTGGG 57.775 61.111 0.00 0.00 36.20 4.12
36 37 0.181350 GCACGATCCTTCTTGGGGAT 59.819 55.000 0.00 0.00 45.23 3.85
38 39 2.158813 GCACGATCCTTCTTGGGGATAA 60.159 50.000 0.00 0.00 42.91 1.75
45 46 3.778075 TCCTTCTTGGGGATAAACGATGA 59.222 43.478 0.00 0.00 36.20 2.92
225 228 4.020218 TCCTTCGTCATCTTCTTGTCCATT 60.020 41.667 0.00 0.00 0.00 3.16
232 235 0.523072 CTTCTTGTCCATTGTGGCGG 59.477 55.000 0.00 0.00 37.47 6.13
408 413 1.408683 CCCTTGATTTGAGATGGCCGA 60.409 52.381 0.00 0.00 0.00 5.54
412 417 3.003394 TGATTTGAGATGGCCGAACAT 57.997 42.857 0.00 0.00 0.00 2.71
433 438 5.432060 ACATGTAAGGCCTAAAGTAGGGATT 59.568 40.000 5.16 0.00 46.32 3.01
438 443 3.850173 AGGCCTAAAGTAGGGATTTGTGA 59.150 43.478 1.29 0.00 46.32 3.58
440 445 3.621715 GCCTAAAGTAGGGATTTGTGACG 59.378 47.826 3.56 0.00 46.32 4.35
446 451 1.604604 AGGGATTTGTGACGGTTGTG 58.395 50.000 0.00 0.00 0.00 3.33
451 456 1.983972 TTTGTGACGGTTGTGCAAAC 58.016 45.000 0.00 0.00 29.89 2.93
453 458 0.730265 TGTGACGGTTGTGCAAACTC 59.270 50.000 10.28 4.05 0.00 3.01
461 466 4.157105 ACGGTTGTGCAAACTCTTTTACTT 59.843 37.500 10.28 0.00 0.00 2.24
466 471 6.942532 TGTGCAAACTCTTTTACTTCATCT 57.057 33.333 0.00 0.00 0.00 2.90
469 474 8.250332 TGTGCAAACTCTTTTACTTCATCTTTT 58.750 29.630 0.00 0.00 0.00 2.27
484 489 4.398044 TCATCTTTTAATTTGAGACGGCCC 59.602 41.667 0.00 0.00 0.00 5.80
502 507 1.613255 CCCAACACGTCTGGCCTAAAT 60.613 52.381 3.32 0.00 32.10 1.40
505 510 3.754323 CCAACACGTCTGGCCTAAATTAA 59.246 43.478 3.32 0.00 0.00 1.40
514 519 6.564328 GTCTGGCCTAAATTAAGGATTTGTG 58.436 40.000 3.32 0.00 39.15 3.33
516 521 7.068716 GTCTGGCCTAAATTAAGGATTTGTGAT 59.931 37.037 3.32 0.00 39.15 3.06
551 556 1.490910 CCCTACTCCACCCCTCAAATC 59.509 57.143 0.00 0.00 0.00 2.17
569 574 2.264794 GAGACGGCGGGACACATT 59.735 61.111 13.24 0.00 0.00 2.71
573 578 2.740826 CGGCGGGACACATTTCGT 60.741 61.111 0.00 0.00 0.00 3.85
588 593 6.154706 ACACATTTCGTCTAAAGTAGGGATCT 59.845 38.462 0.00 0.00 0.00 2.75
610 615 0.323629 GACGGATGTCCAAACTCCCA 59.676 55.000 0.00 0.00 39.30 4.37
653 658 2.022129 GCGGAACACGTCTCACCTG 61.022 63.158 0.00 0.00 46.52 4.00
670 675 2.029221 GAAGTAGGGATCCGCGCC 59.971 66.667 5.45 0.00 0.00 6.53
703 715 2.616376 CTCCAACCACAAAATCACGTGA 59.384 45.455 22.48 22.48 35.02 4.35
755 767 4.576463 AGCAGTTTAACTCACTCAAACAGG 59.424 41.667 0.00 0.00 35.17 4.00
823 835 2.107378 TGCACAAACCAGTAGGGATCAA 59.893 45.455 0.00 0.00 41.15 2.57
1495 1507 1.880646 GCTTTAAGCTCCGGTTGTCCA 60.881 52.381 10.01 0.00 38.45 4.02
1596 1608 2.031683 CGCTGAAACTTTGAAACGAGGT 59.968 45.455 0.00 0.00 0.00 3.85
1604 1616 3.945285 ACTTTGAAACGAGGTGTGTGATT 59.055 39.130 0.00 0.00 0.00 2.57
1612 1624 2.430694 CGAGGTGTGTGATTATGGAGGA 59.569 50.000 0.00 0.00 0.00 3.71
1625 1637 2.380064 TGGAGGAAAATGTGGCTTGT 57.620 45.000 0.00 0.00 0.00 3.16
1948 4633 5.772825 TGCTTCTTTGAATTTGTACAGCT 57.227 34.783 0.00 0.00 0.00 4.24
2073 4775 6.441093 TGTTCTGTGCTTATCATTTCATCC 57.559 37.500 0.00 0.00 0.00 3.51
2115 4825 5.915758 TGTATTGGTGTTGTAAATTTGTCGC 59.084 36.000 0.00 0.00 0.00 5.19
2328 5156 6.259167 GGCGGAAATTGTACATGATAGTAACA 59.741 38.462 0.00 0.00 0.00 2.41
2450 5278 5.414454 TGTGCTTTTAGCCTGTAGGTAATTG 59.586 40.000 0.00 0.00 41.51 2.32
2570 5404 2.019984 CTATCTTGGAAAGCAGGTGCC 58.980 52.381 0.00 0.00 45.70 5.01
2663 5563 9.880157 ACTTTAGTACAAAGTTGAGTCACTTAA 57.120 29.630 14.04 0.00 37.18 1.85
2671 5571 7.287696 ACAAAGTTGAGTCACTTAATTTGGGAT 59.712 33.333 16.35 0.00 35.87 3.85
2738 5644 7.748683 TCAAGTATTTGAATGTACATCGTTTGC 59.251 33.333 9.23 0.00 40.26 3.68
2752 5658 1.393539 CGTTTGCATAGACTGGTTCCG 59.606 52.381 0.00 0.00 0.00 4.30
2872 5781 8.533569 TTATTCAAGAAACCCTGTTTCTTTCT 57.466 30.769 24.73 16.82 43.84 2.52
2952 5861 7.538575 AGGATCGTTCATTTTGTTTTGATAGG 58.461 34.615 0.00 0.00 0.00 2.57
2973 5882 3.132111 GGGTGGCTAAAATTATGTGGTGG 59.868 47.826 0.00 0.00 0.00 4.61
2992 5901 8.315482 TGTGGTGGCATATACATATATAACGTT 58.685 33.333 5.88 5.88 0.00 3.99
3021 5930 1.068281 CTACAGGTGATGCTCGCAGAT 59.932 52.381 0.00 0.00 33.89 2.90
3030 5939 3.557185 TGATGCTCGCAGATGACAATTAC 59.443 43.478 0.00 0.00 33.89 1.89
3067 5976 6.426937 TGACACTAAATGAACTAACTGGAAGC 59.573 38.462 0.00 0.00 37.60 3.86
3119 6028 6.906659 CAGTATGTTTTTCAGAGATGTTGCT 58.093 36.000 0.00 0.00 0.00 3.91
3187 6179 5.741388 AATTGCATCGGTTAGACTTCATC 57.259 39.130 0.00 0.00 0.00 2.92
3188 6180 3.885724 TGCATCGGTTAGACTTCATCA 57.114 42.857 0.00 0.00 0.00 3.07
3239 6231 2.741517 TGCACACGAACGAATCATGAAT 59.258 40.909 0.00 0.00 0.00 2.57
3420 6417 9.651913 TCTAATTTTTCTTATTTGGCATCAACC 57.348 29.630 0.00 0.00 31.78 3.77
3421 6418 9.434420 CTAATTTTTCTTATTTGGCATCAACCA 57.566 29.630 0.00 0.00 38.16 3.67
3473 6470 8.814038 ACATTTCTACTTAGCCAAATTCATCT 57.186 30.769 0.00 0.00 0.00 2.90
3486 6483 8.636213 AGCCAAATTCATCTTCGATTAATCATT 58.364 29.630 15.57 2.49 0.00 2.57
3656 6669 4.511826 ACGACTCAAAAGAACACCTGATTC 59.488 41.667 0.00 0.00 0.00 2.52
4141 7154 2.284190 GAGCAAGCCAAGGTCATAGTC 58.716 52.381 0.00 0.00 33.87 2.59
4273 7286 1.247567 CGTCCAAGGCTTGACCAAAT 58.752 50.000 28.18 0.00 43.14 2.32
4626 7639 1.643880 GCAATATGTTGTTGCCTGCC 58.356 50.000 4.00 0.00 44.65 4.85
4650 7665 3.426787 TCGTTCCTAAAATTGAGGCCA 57.573 42.857 5.01 0.00 33.73 5.36
4652 7667 4.340617 TCGTTCCTAAAATTGAGGCCATT 58.659 39.130 5.01 0.00 33.73 3.16
4654 7669 5.946972 TCGTTCCTAAAATTGAGGCCATTTA 59.053 36.000 5.01 1.72 33.73 1.40
4721 7755 5.447624 TTTGAAGCCCTTTAGTTTGTAGC 57.552 39.130 0.00 0.00 0.00 3.58
4742 7776 6.966637 AGCAATGGATTCCTATTCCTATCT 57.033 37.500 3.95 0.00 34.17 1.98
4750 7784 8.489489 TGGATTCCTATTCCTATCTTATGCATC 58.511 37.037 0.19 0.00 34.17 3.91
4759 7793 8.929260 TTCCTATCTTATGCATCAAATGACAT 57.071 30.769 0.19 0.00 33.67 3.06
4766 7800 7.971722 TCTTATGCATCAAATGACATGTCTTTG 59.028 33.333 27.34 27.34 33.31 2.77
4861 9609 4.147321 GCCAACATGGGATGATATTGACT 58.853 43.478 0.00 0.00 38.19 3.41
4865 9613 4.978099 ACATGGGATGATATTGACTGTCC 58.022 43.478 5.17 0.00 0.00 4.02
4876 9624 0.539438 TGACTGTCCACATTTGGGGC 60.539 55.000 5.17 0.00 44.11 5.80
4899 9647 3.354467 TGTGCATGCATCCATTAGTCAA 58.646 40.909 25.64 0.00 0.00 3.18
4911 9659 3.438087 CCATTAGTCAACTGCAGGAACAG 59.562 47.826 19.93 2.74 43.59 3.16
4922 9671 1.069227 GCAGGAACAGTTTTGCGTAGG 60.069 52.381 7.68 0.00 0.00 3.18
4936 9685 7.657761 AGTTTTGCGTAGGAGGATCAAATATAG 59.342 37.037 0.00 0.00 36.25 1.31
4977 9726 0.977395 ACCGAGAAGCTAGCAACCTT 59.023 50.000 18.83 1.39 0.00 3.50
4978 9727 2.094182 CACCGAGAAGCTAGCAACCTTA 60.094 50.000 18.83 0.00 0.00 2.69
4979 9728 2.766828 ACCGAGAAGCTAGCAACCTTAT 59.233 45.455 18.83 0.00 0.00 1.73
4980 9729 3.181474 ACCGAGAAGCTAGCAACCTTATC 60.181 47.826 18.83 8.17 0.00 1.75
4981 9730 3.181475 CCGAGAAGCTAGCAACCTTATCA 60.181 47.826 18.83 0.00 30.78 2.15
4982 9731 4.047822 CGAGAAGCTAGCAACCTTATCAG 58.952 47.826 18.83 2.68 30.78 2.90
4983 9732 3.802866 AGAAGCTAGCAACCTTATCAGC 58.197 45.455 18.83 0.00 0.00 4.26
4984 9733 2.231215 AGCTAGCAACCTTATCAGCG 57.769 50.000 18.83 0.00 34.26 5.18
4985 9734 1.482593 AGCTAGCAACCTTATCAGCGT 59.517 47.619 18.83 0.00 34.26 5.07
4986 9735 1.861575 GCTAGCAACCTTATCAGCGTC 59.138 52.381 10.63 0.00 0.00 5.19
4987 9736 2.474816 CTAGCAACCTTATCAGCGTCC 58.525 52.381 0.00 0.00 0.00 4.79
4988 9737 0.107654 AGCAACCTTATCAGCGTCCC 60.108 55.000 0.00 0.00 0.00 4.46
4989 9738 0.392461 GCAACCTTATCAGCGTCCCA 60.392 55.000 0.00 0.00 0.00 4.37
4990 9739 1.948611 GCAACCTTATCAGCGTCCCAA 60.949 52.381 0.00 0.00 0.00 4.12
4991 9740 2.009774 CAACCTTATCAGCGTCCCAAG 58.990 52.381 0.00 0.00 0.00 3.61
4992 9741 0.541863 ACCTTATCAGCGTCCCAAGG 59.458 55.000 0.00 0.00 41.29 3.61
4993 9742 0.830648 CCTTATCAGCGTCCCAAGGA 59.169 55.000 0.00 0.00 38.42 3.36
4994 9743 1.209504 CCTTATCAGCGTCCCAAGGAA 59.790 52.381 0.00 0.00 38.42 3.36
4995 9744 2.158755 CCTTATCAGCGTCCCAAGGAAT 60.159 50.000 0.00 0.00 38.42 3.01
4996 9745 2.620251 TATCAGCGTCCCAAGGAATG 57.380 50.000 0.00 0.00 31.38 2.67
5006 9755 0.890683 CCAAGGAATGGCACTGAACC 59.109 55.000 0.00 0.00 43.80 3.62
5007 9756 1.548582 CCAAGGAATGGCACTGAACCT 60.549 52.381 0.00 0.00 43.80 3.50
5008 9757 1.542915 CAAGGAATGGCACTGAACCTG 59.457 52.381 0.00 0.00 0.00 4.00
5009 9758 0.610232 AGGAATGGCACTGAACCTGC 60.610 55.000 0.00 0.00 0.00 4.85
5010 9759 1.503542 GAATGGCACTGAACCTGCG 59.496 57.895 0.00 0.00 35.31 5.18
5011 9760 1.926511 GAATGGCACTGAACCTGCGG 61.927 60.000 0.00 0.00 35.31 5.69
5012 9761 2.697147 AATGGCACTGAACCTGCGGT 62.697 55.000 0.00 0.00 37.65 5.68
5020 9769 2.030562 AACCTGCGGTTCAGTCGG 59.969 61.111 7.08 0.00 43.05 4.79
5021 9770 2.504274 AACCTGCGGTTCAGTCGGA 61.504 57.895 7.08 0.00 43.05 4.55
5022 9771 2.125912 CCTGCGGTTCAGTCGGAG 60.126 66.667 0.00 0.00 43.89 4.63
5023 9772 2.811317 CTGCGGTTCAGTCGGAGC 60.811 66.667 0.00 0.00 39.02 4.70
5024 9773 3.573772 CTGCGGTTCAGTCGGAGCA 62.574 63.158 0.00 0.00 39.02 4.26
5025 9774 2.357034 GCGGTTCAGTCGGAGCAA 60.357 61.111 0.00 0.00 0.00 3.91
5026 9775 2.383527 GCGGTTCAGTCGGAGCAAG 61.384 63.158 0.00 0.00 0.00 4.01
5027 9776 2.383527 CGGTTCAGTCGGAGCAAGC 61.384 63.158 0.00 0.00 0.00 4.01
5028 9777 2.383527 GGTTCAGTCGGAGCAAGCG 61.384 63.158 0.00 0.00 0.00 4.68
5029 9778 1.372997 GTTCAGTCGGAGCAAGCGA 60.373 57.895 0.00 0.00 0.00 4.93
5030 9779 1.372997 TTCAGTCGGAGCAAGCGAC 60.373 57.895 0.00 0.00 0.00 5.19
5031 9780 2.049156 CAGTCGGAGCAAGCGACA 60.049 61.111 0.00 0.00 35.37 4.35
5032 9781 1.664649 CAGTCGGAGCAAGCGACAA 60.665 57.895 0.00 0.00 35.37 3.18
5033 9782 1.373497 AGTCGGAGCAAGCGACAAG 60.373 57.895 0.00 0.00 35.37 3.16
5043 9792 2.401195 GCGACAAGCGATCAAGGC 59.599 61.111 0.00 0.00 44.57 4.35
5044 9793 3.093278 CGACAAGCGATCAAGGCC 58.907 61.111 0.00 0.00 44.57 5.19
5045 9794 2.464459 CGACAAGCGATCAAGGCCC 61.464 63.158 0.00 0.00 44.57 5.80
5046 9795 2.044946 ACAAGCGATCAAGGCCCC 60.045 61.111 0.00 0.00 0.00 5.80
5047 9796 3.204827 CAAGCGATCAAGGCCCCG 61.205 66.667 0.00 0.00 0.00 5.73
5048 9797 3.717294 AAGCGATCAAGGCCCCGT 61.717 61.111 0.00 0.00 0.00 5.28
5049 9798 2.363975 AAGCGATCAAGGCCCCGTA 61.364 57.895 0.00 0.00 0.00 4.02
5050 9799 2.280186 GCGATCAAGGCCCCGTAG 60.280 66.667 0.00 0.00 0.00 3.51
5051 9800 2.280186 CGATCAAGGCCCCGTAGC 60.280 66.667 0.00 0.00 0.00 3.58
5052 9801 2.908015 GATCAAGGCCCCGTAGCA 59.092 61.111 0.00 0.00 0.00 3.49
5053 9802 1.227674 GATCAAGGCCCCGTAGCAG 60.228 63.158 0.00 0.00 0.00 4.24
5054 9803 1.686325 GATCAAGGCCCCGTAGCAGA 61.686 60.000 0.00 0.00 0.00 4.26
5055 9804 1.056700 ATCAAGGCCCCGTAGCAGAT 61.057 55.000 0.00 0.00 0.00 2.90
5056 9805 1.227674 CAAGGCCCCGTAGCAGATC 60.228 63.158 0.00 0.00 0.00 2.75
5057 9806 1.383248 AAGGCCCCGTAGCAGATCT 60.383 57.895 0.00 0.00 0.00 2.75
5058 9807 1.690219 AAGGCCCCGTAGCAGATCTG 61.690 60.000 18.84 18.84 0.00 2.90
5059 9808 2.134287 GGCCCCGTAGCAGATCTGA 61.134 63.158 27.04 3.12 0.00 3.27
5060 9809 1.068250 GCCCCGTAGCAGATCTGAC 59.932 63.158 27.04 16.75 0.00 3.51
5061 9810 1.676678 GCCCCGTAGCAGATCTGACA 61.677 60.000 27.04 9.71 0.00 3.58
5062 9811 0.824109 CCCCGTAGCAGATCTGACAA 59.176 55.000 27.04 7.43 0.00 3.18
5063 9812 1.202463 CCCCGTAGCAGATCTGACAAG 60.202 57.143 27.04 13.76 0.00 3.16
5064 9813 1.565305 CCGTAGCAGATCTGACAAGC 58.435 55.000 27.04 10.44 0.00 4.01
5065 9814 1.134995 CCGTAGCAGATCTGACAAGCA 60.135 52.381 27.04 0.84 0.00 3.91
5066 9815 2.610433 CGTAGCAGATCTGACAAGCAA 58.390 47.619 27.04 0.00 0.00 3.91
5067 9816 2.995939 CGTAGCAGATCTGACAAGCAAA 59.004 45.455 27.04 0.17 0.00 3.68
5068 9817 3.061831 CGTAGCAGATCTGACAAGCAAAG 59.938 47.826 27.04 3.30 0.00 2.77
5069 9818 3.413846 AGCAGATCTGACAAGCAAAGA 57.586 42.857 27.04 0.00 0.00 2.52
5070 9819 3.748083 AGCAGATCTGACAAGCAAAGAA 58.252 40.909 27.04 0.00 0.00 2.52
5071 9820 3.752222 AGCAGATCTGACAAGCAAAGAAG 59.248 43.478 27.04 0.00 0.00 2.85
5072 9821 3.750130 GCAGATCTGACAAGCAAAGAAGA 59.250 43.478 27.04 0.00 0.00 2.87
5073 9822 4.378253 GCAGATCTGACAAGCAAAGAAGAC 60.378 45.833 27.04 0.00 0.00 3.01
5074 9823 3.993081 AGATCTGACAAGCAAAGAAGACG 59.007 43.478 0.00 0.00 0.00 4.18
5075 9824 2.483876 TCTGACAAGCAAAGAAGACGG 58.516 47.619 0.00 0.00 0.00 4.79
5076 9825 0.944386 TGACAAGCAAAGAAGACGGC 59.056 50.000 0.00 0.00 0.00 5.68
5077 9826 0.110644 GACAAGCAAAGAAGACGGCG 60.111 55.000 4.80 4.80 0.00 6.46
5078 9827 1.441016 CAAGCAAAGAAGACGGCGC 60.441 57.895 6.90 0.00 0.00 6.53
5079 9828 2.954753 AAGCAAAGAAGACGGCGCG 61.955 57.895 6.90 0.00 0.00 6.86
5080 9829 4.445545 GCAAAGAAGACGGCGCGG 62.446 66.667 14.03 14.03 0.00 6.46
5081 9830 3.788766 CAAAGAAGACGGCGCGGG 61.789 66.667 19.75 7.77 0.00 6.13
5082 9831 3.998672 AAAGAAGACGGCGCGGGA 61.999 61.111 19.75 0.00 0.00 5.14
5083 9832 3.524648 AAAGAAGACGGCGCGGGAA 62.525 57.895 19.75 0.00 0.00 3.97
5084 9833 3.934391 AAGAAGACGGCGCGGGAAG 62.934 63.158 19.75 1.99 0.00 3.46
5085 9834 4.430765 GAAGACGGCGCGGGAAGA 62.431 66.667 19.75 0.00 0.00 2.87
5086 9835 3.927163 GAAGACGGCGCGGGAAGAA 62.927 63.158 19.75 0.00 0.00 2.52
5087 9836 3.310860 AAGACGGCGCGGGAAGAAT 62.311 57.895 19.75 0.00 0.00 2.40
5088 9837 3.262686 GACGGCGCGGGAAGAATC 61.263 66.667 19.75 2.62 0.00 2.52
5089 9838 4.077184 ACGGCGCGGGAAGAATCA 62.077 61.111 19.75 0.00 0.00 2.57
5090 9839 2.817834 CGGCGCGGGAAGAATCAA 60.818 61.111 8.83 0.00 0.00 2.57
5091 9840 2.813179 CGGCGCGGGAAGAATCAAG 61.813 63.158 8.83 0.00 0.00 3.02
5092 9841 2.405191 GCGCGGGAAGAATCAAGC 59.595 61.111 8.83 0.00 0.00 4.01
5093 9842 2.398554 GCGCGGGAAGAATCAAGCA 61.399 57.895 8.83 0.00 32.12 3.91
5094 9843 1.922135 GCGCGGGAAGAATCAAGCAA 61.922 55.000 8.83 0.00 32.12 3.91
5095 9844 0.097674 CGCGGGAAGAATCAAGCAAG 59.902 55.000 0.00 0.00 32.12 4.01
5096 9845 0.179153 GCGGGAAGAATCAAGCAAGC 60.179 55.000 0.00 0.00 32.12 4.01
5097 9846 1.167851 CGGGAAGAATCAAGCAAGCA 58.832 50.000 0.00 0.00 0.00 3.91
5098 9847 1.131883 CGGGAAGAATCAAGCAAGCAG 59.868 52.381 0.00 0.00 0.00 4.24
5099 9848 2.440409 GGGAAGAATCAAGCAAGCAGA 58.560 47.619 0.00 0.00 0.00 4.26
5100 9849 3.022406 GGGAAGAATCAAGCAAGCAGAT 58.978 45.455 0.00 0.00 0.00 2.90
5101 9850 3.181489 GGGAAGAATCAAGCAAGCAGATG 60.181 47.826 0.00 0.00 0.00 2.90
5102 9851 3.181489 GGAAGAATCAAGCAAGCAGATGG 60.181 47.826 0.00 0.00 0.00 3.51
5103 9852 2.376109 AGAATCAAGCAAGCAGATGGG 58.624 47.619 0.00 0.00 0.00 4.00
5104 9853 0.822164 AATCAAGCAAGCAGATGGGC 59.178 50.000 0.00 0.00 0.00 5.36
5105 9854 1.041447 ATCAAGCAAGCAGATGGGCC 61.041 55.000 0.00 0.00 0.00 5.80
5106 9855 1.681327 CAAGCAAGCAGATGGGCCT 60.681 57.895 4.53 0.00 0.00 5.19
5107 9856 0.394762 CAAGCAAGCAGATGGGCCTA 60.395 55.000 4.53 0.00 0.00 3.93
5108 9857 0.394899 AAGCAAGCAGATGGGCCTAC 60.395 55.000 4.53 0.00 0.00 3.18
5109 9858 1.825622 GCAAGCAGATGGGCCTACC 60.826 63.158 4.53 0.00 40.81 3.18
5142 9891 2.742372 GAGACCAACGCACCGCAT 60.742 61.111 0.00 0.00 0.00 4.73
5143 9892 2.281484 AGACCAACGCACCGCATT 60.281 55.556 0.00 0.00 0.00 3.56
5144 9893 2.126888 GACCAACGCACCGCATTG 60.127 61.111 0.00 0.00 0.00 2.82
5145 9894 3.609214 GACCAACGCACCGCATTGG 62.609 63.158 11.92 11.92 46.95 3.16
5147 9896 4.041917 CAACGCACCGCATTGGCT 62.042 61.111 0.00 0.00 43.94 4.75
5148 9897 2.359354 AACGCACCGCATTGGCTA 60.359 55.556 0.00 0.00 43.94 3.93
5149 9898 1.748879 AACGCACCGCATTGGCTAT 60.749 52.632 0.00 0.00 43.94 2.97
5150 9899 1.714899 AACGCACCGCATTGGCTATC 61.715 55.000 0.00 0.00 43.94 2.08
5151 9900 2.633657 GCACCGCATTGGCTATCG 59.366 61.111 0.00 0.00 43.94 2.92
5152 9901 2.896801 GCACCGCATTGGCTATCGG 61.897 63.158 14.36 14.36 46.61 4.18
5153 9902 1.227527 CACCGCATTGGCTATCGGA 60.228 57.895 19.76 0.00 44.23 4.55
5154 9903 1.227556 ACCGCATTGGCTATCGGAC 60.228 57.895 19.76 0.00 44.23 4.79
5155 9904 1.069765 CCGCATTGGCTATCGGACT 59.930 57.895 11.90 0.00 44.23 3.85
5156 9905 0.317160 CCGCATTGGCTATCGGACTA 59.683 55.000 11.90 0.00 44.23 2.59
5157 9906 1.419374 CGCATTGGCTATCGGACTAC 58.581 55.000 0.00 0.00 38.10 2.73
5158 9907 1.797025 GCATTGGCTATCGGACTACC 58.203 55.000 0.00 0.00 36.96 3.18
5159 9908 1.070134 GCATTGGCTATCGGACTACCA 59.930 52.381 0.00 0.00 36.96 3.25
5160 9909 2.868044 GCATTGGCTATCGGACTACCAG 60.868 54.545 0.00 0.00 36.96 4.00
5161 9910 0.750850 TTGGCTATCGGACTACCAGC 59.249 55.000 0.00 0.00 33.63 4.85
5162 9911 0.396556 TGGCTATCGGACTACCAGCA 60.397 55.000 0.00 0.00 35.33 4.41
5163 9912 0.315568 GGCTATCGGACTACCAGCAG 59.684 60.000 0.00 0.00 35.33 4.24
5164 9913 0.315568 GCTATCGGACTACCAGCAGG 59.684 60.000 0.00 0.00 42.21 4.85
5165 9914 0.315568 CTATCGGACTACCAGCAGGC 59.684 60.000 0.00 0.00 39.06 4.85
5166 9915 1.113517 TATCGGACTACCAGCAGGCC 61.114 60.000 0.00 0.00 40.76 5.19
5167 9916 4.162690 CGGACTACCAGCAGGCCC 62.163 72.222 0.00 0.00 41.15 5.80
5168 9917 3.798511 GGACTACCAGCAGGCCCC 61.799 72.222 0.00 0.00 37.82 5.80
5169 9918 2.689034 GACTACCAGCAGGCCCCT 60.689 66.667 0.00 0.00 39.06 4.79
5170 9919 2.204151 ACTACCAGCAGGCCCCTT 60.204 61.111 0.00 0.00 39.06 3.95
5171 9920 0.981277 GACTACCAGCAGGCCCCTTA 60.981 60.000 0.00 0.00 39.06 2.69
5172 9921 0.549169 ACTACCAGCAGGCCCCTTAA 60.549 55.000 0.00 0.00 39.06 1.85
5173 9922 0.107165 CTACCAGCAGGCCCCTTAAC 60.107 60.000 0.00 0.00 39.06 2.01
5174 9923 0.549169 TACCAGCAGGCCCCTTAACT 60.549 55.000 0.00 0.00 39.06 2.24
5175 9924 1.379044 CCAGCAGGCCCCTTAACTG 60.379 63.158 0.00 0.00 35.40 3.16
5176 9925 1.380302 CAGCAGGCCCCTTAACTGT 59.620 57.895 0.00 0.00 34.79 3.55
5177 9926 0.962356 CAGCAGGCCCCTTAACTGTG 60.962 60.000 0.00 0.00 34.79 3.66
5178 9927 1.074951 GCAGGCCCCTTAACTGTGT 59.925 57.895 0.00 0.00 34.79 3.72
5179 9928 0.539669 GCAGGCCCCTTAACTGTGTT 60.540 55.000 0.00 0.00 34.79 3.32
5180 9929 1.271707 GCAGGCCCCTTAACTGTGTTA 60.272 52.381 0.00 0.00 34.79 2.41
5181 9930 2.816337 GCAGGCCCCTTAACTGTGTTAA 60.816 50.000 0.00 3.38 34.79 2.01
5182 9931 2.817844 CAGGCCCCTTAACTGTGTTAAC 59.182 50.000 0.00 0.00 0.00 2.01
5183 9932 1.808343 GGCCCCTTAACTGTGTTAACG 59.192 52.381 0.26 0.00 0.00 3.18
5184 9933 1.808343 GCCCCTTAACTGTGTTAACGG 59.192 52.381 0.26 9.63 38.76 4.44
5186 9935 3.069289 CCCCTTAACTGTGTTAACGGTC 58.931 50.000 0.26 0.00 45.50 4.79
5187 9936 3.494749 CCCCTTAACTGTGTTAACGGTCA 60.495 47.826 0.26 0.00 45.50 4.02
5188 9937 3.495753 CCCTTAACTGTGTTAACGGTCAC 59.504 47.826 0.26 0.00 45.50 3.67
5189 9938 4.374399 CCTTAACTGTGTTAACGGTCACT 58.626 43.478 0.26 0.00 45.50 3.41
5190 9939 5.509501 CCCTTAACTGTGTTAACGGTCACTA 60.510 44.000 0.26 0.00 45.50 2.74
5191 9940 5.632347 CCTTAACTGTGTTAACGGTCACTAG 59.368 44.000 0.26 0.00 45.50 2.57
5192 9941 4.660789 AACTGTGTTAACGGTCACTAGT 57.339 40.909 0.26 0.00 45.50 2.57
5193 9942 4.660789 ACTGTGTTAACGGTCACTAGTT 57.339 40.909 0.26 0.00 42.50 2.24
5194 9943 5.014808 ACTGTGTTAACGGTCACTAGTTT 57.985 39.130 0.26 0.00 42.50 2.66
5195 9944 6.147864 ACTGTGTTAACGGTCACTAGTTTA 57.852 37.500 0.26 0.00 42.50 2.01
5196 9945 6.572519 ACTGTGTTAACGGTCACTAGTTTAA 58.427 36.000 0.26 0.00 42.50 1.52
5197 9946 7.041107 ACTGTGTTAACGGTCACTAGTTTAAA 58.959 34.615 0.26 0.00 42.50 1.52
5198 9947 7.712205 ACTGTGTTAACGGTCACTAGTTTAAAT 59.288 33.333 0.26 0.00 42.50 1.40
5199 9948 9.195411 CTGTGTTAACGGTCACTAGTTTAAATA 57.805 33.333 0.26 0.00 35.82 1.40
5200 9949 9.195411 TGTGTTAACGGTCACTAGTTTAAATAG 57.805 33.333 0.26 0.00 35.82 1.73
5201 9950 9.410556 GTGTTAACGGTCACTAGTTTAAATAGA 57.589 33.333 6.44 0.00 0.00 1.98
5202 9951 9.410556 TGTTAACGGTCACTAGTTTAAATAGAC 57.589 33.333 6.44 0.00 0.00 2.59
5203 9952 9.410556 GTTAACGGTCACTAGTTTAAATAGACA 57.589 33.333 6.44 0.00 0.00 3.41
5204 9953 9.979578 TTAACGGTCACTAGTTTAAATAGACAA 57.020 29.630 6.44 0.00 0.00 3.18
5206 9955 9.498176 AACGGTCACTAGTTTAAATAGACAATT 57.502 29.630 6.44 1.46 0.00 2.32
5207 9956 8.932791 ACGGTCACTAGTTTAAATAGACAATTG 58.067 33.333 6.44 3.24 0.00 2.32
5208 9957 7.903431 CGGTCACTAGTTTAAATAGACAATTGC 59.097 37.037 5.05 0.00 0.00 3.56
5209 9958 8.947115 GGTCACTAGTTTAAATAGACAATTGCT 58.053 33.333 5.05 6.49 0.00 3.91
5240 9989 3.426787 TTTTATCGGCTTGGACTTGGA 57.573 42.857 0.00 0.00 0.00 3.53
5241 9990 2.396590 TTATCGGCTTGGACTTGGAC 57.603 50.000 0.00 0.00 0.00 4.02
5242 9991 0.174845 TATCGGCTTGGACTTGGACG 59.825 55.000 0.00 0.00 0.00 4.79
5243 9992 1.541310 ATCGGCTTGGACTTGGACGA 61.541 55.000 0.00 0.00 44.69 4.20
5244 9993 1.079127 CGGCTTGGACTTGGACGAT 60.079 57.895 0.00 0.00 32.69 3.73
5245 9994 1.361668 CGGCTTGGACTTGGACGATG 61.362 60.000 0.00 0.00 32.69 3.84
5246 9995 1.026718 GGCTTGGACTTGGACGATGG 61.027 60.000 0.00 0.00 0.00 3.51
5247 9996 1.648467 GCTTGGACTTGGACGATGGC 61.648 60.000 0.00 0.00 0.00 4.40
5248 9997 0.036010 CTTGGACTTGGACGATGGCT 60.036 55.000 0.00 0.00 0.00 4.75
5249 9998 0.400213 TTGGACTTGGACGATGGCTT 59.600 50.000 0.00 0.00 0.00 4.35
5250 9999 0.036388 TGGACTTGGACGATGGCTTC 60.036 55.000 0.00 0.00 0.00 3.86
5263 10012 2.047560 GCTTCGGCCGGTTGTAGT 60.048 61.111 27.83 0.00 34.32 2.73
5264 10013 2.098831 GCTTCGGCCGGTTGTAGTC 61.099 63.158 27.83 7.79 34.32 2.59
5265 10014 1.804326 CTTCGGCCGGTTGTAGTCG 60.804 63.158 27.83 0.00 0.00 4.18
5266 10015 2.482296 CTTCGGCCGGTTGTAGTCGT 62.482 60.000 27.83 0.00 0.00 4.34
5267 10016 2.752322 TTCGGCCGGTTGTAGTCGTG 62.752 60.000 27.83 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 5.522460 TCGTCCTTCATTTCATCGTTTATCC 59.478 40.000 0.00 0.00 0.00 2.59
36 37 4.868171 CCTCGTCCTTCATTTCATCGTTTA 59.132 41.667 0.00 0.00 0.00 2.01
38 39 3.262420 CCTCGTCCTTCATTTCATCGTT 58.738 45.455 0.00 0.00 0.00 3.85
45 46 1.208165 AGGGCCCTCGTCCTTCATTT 61.208 55.000 22.28 0.00 0.00 2.32
357 362 2.970324 GTTCGAACAGCCGCCACA 60.970 61.111 23.12 0.00 0.00 4.17
408 413 4.786454 TCCCTACTTTAGGCCTTACATGTT 59.214 41.667 12.58 0.00 44.86 2.71
412 417 5.252164 ACAAATCCCTACTTTAGGCCTTACA 59.748 40.000 12.58 0.00 44.86 2.41
433 438 1.131504 GAGTTTGCACAACCGTCACAA 59.868 47.619 7.77 0.00 0.00 3.33
438 443 3.692593 AGTAAAAGAGTTTGCACAACCGT 59.307 39.130 7.77 0.00 32.23 4.83
440 445 5.646606 TGAAGTAAAAGAGTTTGCACAACC 58.353 37.500 7.77 2.09 32.23 3.77
461 466 4.398044 GGGCCGTCTCAAATTAAAAGATGA 59.602 41.667 0.00 0.00 0.00 2.92
466 471 3.637229 TGTTGGGCCGTCTCAAATTAAAA 59.363 39.130 0.00 0.00 0.00 1.52
469 474 2.156098 GTGTTGGGCCGTCTCAAATTA 58.844 47.619 0.00 0.00 0.00 1.40
484 489 4.142687 CCTTAATTTAGGCCAGACGTGTTG 60.143 45.833 5.01 0.00 0.00 3.33
502 507 8.956426 GTTTGGACATCTATCACAAATCCTTAA 58.044 33.333 0.00 0.00 34.11 1.85
505 510 6.725364 AGTTTGGACATCTATCACAAATCCT 58.275 36.000 0.00 0.00 34.11 3.24
514 519 4.902448 AGTAGGGGAGTTTGGACATCTATC 59.098 45.833 0.00 0.00 0.00 2.08
516 521 4.287552 GAGTAGGGGAGTTTGGACATCTA 58.712 47.826 0.00 0.00 0.00 1.98
551 556 3.642778 AATGTGTCCCGCCGTCTCG 62.643 63.158 0.00 0.00 0.00 4.04
567 572 5.602628 GCAGATCCCTACTTTAGACGAAAT 58.397 41.667 0.00 0.00 0.00 2.17
569 574 3.066342 CGCAGATCCCTACTTTAGACGAA 59.934 47.826 0.00 0.00 0.00 3.85
573 578 2.617308 CGTCGCAGATCCCTACTTTAGA 59.383 50.000 0.00 0.00 40.67 2.10
588 593 0.669318 GAGTTTGGACATCCGTCGCA 60.669 55.000 0.00 0.00 43.61 5.10
610 615 1.358787 TCAATTTGAGGGGTGGAGCAT 59.641 47.619 0.00 0.00 0.00 3.79
639 644 2.296471 CCTACTTCAGGTGAGACGTGTT 59.704 50.000 0.00 0.00 39.91 3.32
649 654 1.392710 CGCGGATCCCTACTTCAGGT 61.393 60.000 6.06 0.00 43.80 4.00
653 658 2.029221 GGCGCGGATCCCTACTTC 59.971 66.667 8.83 0.00 0.00 3.01
680 692 2.226330 CGTGATTTTGTGGTTGGAGGA 58.774 47.619 0.00 0.00 0.00 3.71
703 715 6.759497 AGCTTCTTCGGTTTTTATATTGCT 57.241 33.333 0.00 0.00 0.00 3.91
755 767 3.338126 ATCCACCGACGACGACAGC 62.338 63.158 9.28 0.00 42.66 4.40
1596 1608 5.418524 CCACATTTTCCTCCATAATCACACA 59.581 40.000 0.00 0.00 0.00 3.72
1604 1616 4.016444 GACAAGCCACATTTTCCTCCATA 58.984 43.478 0.00 0.00 0.00 2.74
1612 1624 4.341806 TCAATCACTGACAAGCCACATTTT 59.658 37.500 0.00 0.00 0.00 1.82
1625 1637 6.766467 CAGATCAATGGAATCTCAATCACTGA 59.234 38.462 0.00 0.00 0.00 3.41
1841 4526 5.579047 ACAATTCAATGAGACCCCATAACA 58.421 37.500 0.00 0.00 0.00 2.41
1948 4633 2.334977 TGGTAAAGCTCTGGGAAGTGA 58.665 47.619 0.00 0.00 0.00 3.41
2276 4992 7.500141 AGCATAAACATTCAGTTGGTTCTTTT 58.500 30.769 0.00 0.00 41.19 2.27
2279 4995 5.106555 CGAGCATAAACATTCAGTTGGTTCT 60.107 40.000 0.00 0.00 41.19 3.01
2298 5014 0.320858 TGTACAATTTCCGCCGAGCA 60.321 50.000 0.00 0.00 0.00 4.26
2328 5156 4.046286 TGGGCCTAACATCACTCATTTT 57.954 40.909 4.53 0.00 0.00 1.82
2450 5278 3.304726 GCAAGCCCAAGTGTCTTAACTTC 60.305 47.826 0.00 0.00 38.34 3.01
2637 5472 9.880157 TTAAGTGACTCAACTTTGTACTAAAGT 57.120 29.630 14.04 14.04 40.77 2.66
2642 5542 8.621286 CCAAATTAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2663 5563 3.151542 AGTACTCCCTCCATCCCAAAT 57.848 47.619 0.00 0.00 0.00 2.32
2667 5567 1.763545 GTCAAGTACTCCCTCCATCCC 59.236 57.143 0.00 0.00 0.00 3.85
2671 5571 2.248248 CACTGTCAAGTACTCCCTCCA 58.752 52.381 0.00 0.00 33.79 3.86
2738 5644 3.491619 CCAGATCACGGAACCAGTCTATG 60.492 52.174 0.00 0.00 0.00 2.23
2752 5658 1.099879 GCACAGGGCATCCAGATCAC 61.100 60.000 0.00 0.00 43.97 3.06
2791 5697 5.479306 TCTTTCCTAAGTTCCAGAACATCG 58.521 41.667 12.76 0.00 43.47 3.84
2872 5781 8.825667 AAGAAAACACTAAAAGAAAGCAACAA 57.174 26.923 0.00 0.00 0.00 2.83
2952 5861 3.430236 GCCACCACATAATTTTAGCCACC 60.430 47.826 0.00 0.00 0.00 4.61
2992 5901 6.127980 GCGAGCATCACCTGTAGAGTTATATA 60.128 42.308 0.00 0.00 33.17 0.86
3012 5921 5.043903 TCTTAGTAATTGTCATCTGCGAGC 58.956 41.667 0.00 0.00 0.00 5.03
3021 5930 8.038944 GTGTCAAGGGTATCTTAGTAATTGTCA 58.961 37.037 0.00 0.00 33.68 3.58
3030 5939 9.099454 GTTCATTTAGTGTCAAGGGTATCTTAG 57.901 37.037 0.00 0.00 33.68 2.18
3052 5961 1.275291 CTCCCGCTTCCAGTTAGTTCA 59.725 52.381 0.00 0.00 0.00 3.18
3067 5976 6.128553 CGTTTATCATATGAACCATTCTCCCG 60.129 42.308 9.99 0.00 0.00 5.14
3119 6028 1.137872 GCACCCATGTGACACCAAAAA 59.862 47.619 2.45 0.00 45.76 1.94
3172 6164 5.854010 AAGCTATGATGAAGTCTAACCGA 57.146 39.130 0.00 0.00 0.00 4.69
3187 6179 9.844790 TGATGAAACACTCAATTTTAAGCTATG 57.155 29.630 0.00 0.00 37.67 2.23
3188 6180 9.846248 GTGATGAAACACTCAATTTTAAGCTAT 57.154 29.630 0.00 0.00 37.67 2.97
3269 6262 4.391155 AGGGTTTTGCTATTTGTACGACA 58.609 39.130 0.00 0.00 0.00 4.35
3394 6388 9.651913 GGTTGATGCCAAATAAGAAAAATTAGA 57.348 29.630 0.00 0.00 33.49 2.10
3508 6505 3.070446 TCCAACGCTAACTTCTCTGGAAA 59.930 43.478 0.00 0.00 0.00 3.13
3514 6511 2.745515 AGGTCCAACGCTAACTTCTC 57.254 50.000 0.00 0.00 0.00 2.87
3656 6669 5.163744 CCAAAATCTGCTCTCTGTGAGATTG 60.164 44.000 10.70 5.37 45.39 2.67
3785 6798 5.186409 AGAGGTAAATGTTAGCTTCACCGTA 59.814 40.000 0.00 0.00 0.00 4.02
3949 6962 8.900781 AGAAGTTCATCCAATATTGTCATTGAG 58.099 33.333 14.25 0.00 38.01 3.02
4141 7154 2.034879 ATTGTTGCTCCTCGGTGCG 61.035 57.895 5.63 0.00 37.43 5.34
4273 7286 1.670015 CTCTGTGCAGACTGCTCCA 59.330 57.895 26.94 20.90 45.31 3.86
4593 7606 2.530460 TATTGCAGGGTCCAAAGCAT 57.470 45.000 3.37 0.00 36.80 3.79
4626 7639 4.379499 GGCCTCAATTTTAGGAACGAACTG 60.379 45.833 7.65 0.00 36.08 3.16
4721 7755 9.118300 GCATAAGATAGGAATAGGAATCCATTG 57.882 37.037 0.61 0.00 39.55 2.82
4742 7776 7.604549 ACAAAGACATGTCATTTGATGCATAA 58.395 30.769 33.40 0.00 37.37 1.90
4802 9550 5.707764 GCCTCCTTTGTTCATAGGATATTCC 59.292 44.000 11.24 0.00 39.72 3.01
4803 9551 5.707764 GGCCTCCTTTGTTCATAGGATATTC 59.292 44.000 11.24 3.52 39.72 1.75
4804 9552 5.373854 AGGCCTCCTTTGTTCATAGGATATT 59.626 40.000 0.00 0.00 39.72 1.28
4806 9554 4.103153 CAGGCCTCCTTTGTTCATAGGATA 59.897 45.833 0.00 0.00 39.72 2.59
4839 9587 4.022589 CAGTCAATATCATCCCATGTTGGC 60.023 45.833 0.00 0.00 35.79 4.52
4876 9624 3.316868 TGACTAATGGATGCATGCACATG 59.683 43.478 25.37 16.99 41.60 3.21
4911 9659 4.965119 ATTTGATCCTCCTACGCAAAAC 57.035 40.909 0.00 0.00 32.91 2.43
4922 9671 5.010719 TGACGGGACACTATATTTGATCCTC 59.989 44.000 0.00 0.00 0.00 3.71
4936 9685 1.068474 CGACAAAGATGACGGGACAC 58.932 55.000 0.00 0.00 40.28 3.67
4967 9716 2.474816 GGACGCTGATAAGGTTGCTAG 58.525 52.381 0.00 0.00 0.00 3.42
4977 9726 1.140852 CCATTCCTTGGGACGCTGATA 59.859 52.381 0.00 0.00 42.33 2.15
4978 9727 0.107017 CCATTCCTTGGGACGCTGAT 60.107 55.000 0.00 0.00 42.33 2.90
4979 9728 1.299648 CCATTCCTTGGGACGCTGA 59.700 57.895 0.00 0.00 42.33 4.26
4980 9729 2.409870 GCCATTCCTTGGGACGCTG 61.410 63.158 0.00 0.00 46.55 5.18
4981 9730 2.044946 GCCATTCCTTGGGACGCT 60.045 61.111 0.00 0.00 46.55 5.07
4982 9731 2.361104 TGCCATTCCTTGGGACGC 60.361 61.111 0.00 0.00 46.55 5.19
4985 9734 0.776810 TTCAGTGCCATTCCTTGGGA 59.223 50.000 0.00 0.00 46.55 4.37
4986 9735 0.890683 GTTCAGTGCCATTCCTTGGG 59.109 55.000 0.00 0.00 46.55 4.12
4988 9737 1.542915 CAGGTTCAGTGCCATTCCTTG 59.457 52.381 0.00 0.00 0.00 3.61
4989 9738 1.915141 CAGGTTCAGTGCCATTCCTT 58.085 50.000 0.00 0.00 0.00 3.36
4990 9739 0.610232 GCAGGTTCAGTGCCATTCCT 60.610 55.000 0.00 0.00 34.67 3.36
4991 9740 1.885871 GCAGGTTCAGTGCCATTCC 59.114 57.895 0.00 0.00 34.67 3.01
4992 9741 1.503542 CGCAGGTTCAGTGCCATTC 59.496 57.895 0.00 0.00 37.67 2.67
4993 9742 3.672293 CGCAGGTTCAGTGCCATT 58.328 55.556 0.00 0.00 37.67 3.16
5007 9756 3.158537 TTGCTCCGACTGAACCGCA 62.159 57.895 0.00 0.00 0.00 5.69
5008 9757 2.357034 TTGCTCCGACTGAACCGC 60.357 61.111 0.00 0.00 0.00 5.68
5009 9758 2.383527 GCTTGCTCCGACTGAACCG 61.384 63.158 0.00 0.00 0.00 4.44
5010 9759 2.383527 CGCTTGCTCCGACTGAACC 61.384 63.158 0.00 0.00 0.00 3.62
5011 9760 1.372997 TCGCTTGCTCCGACTGAAC 60.373 57.895 0.00 0.00 0.00 3.18
5012 9761 3.047735 TCGCTTGCTCCGACTGAA 58.952 55.556 0.00 0.00 0.00 3.02
5017 9766 2.738521 GCTTGTCGCTTGCTCCGA 60.739 61.111 0.00 0.00 35.14 4.55
5018 9767 4.139420 CGCTTGTCGCTTGCTCCG 62.139 66.667 0.00 0.00 36.13 4.63
5019 9768 2.029904 GATCGCTTGTCGCTTGCTCC 62.030 60.000 0.00 0.00 38.27 4.70
5020 9769 1.346538 GATCGCTTGTCGCTTGCTC 59.653 57.895 0.00 0.00 38.27 4.26
5021 9770 0.950555 TTGATCGCTTGTCGCTTGCT 60.951 50.000 0.00 0.00 38.27 3.91
5022 9771 0.519999 CTTGATCGCTTGTCGCTTGC 60.520 55.000 0.00 0.00 38.27 4.01
5023 9772 0.095935 CCTTGATCGCTTGTCGCTTG 59.904 55.000 0.00 0.00 38.27 4.01
5024 9773 1.639298 GCCTTGATCGCTTGTCGCTT 61.639 55.000 0.00 0.00 38.27 4.68
5025 9774 2.103042 GCCTTGATCGCTTGTCGCT 61.103 57.895 0.00 0.00 38.27 4.93
5026 9775 2.401195 GCCTTGATCGCTTGTCGC 59.599 61.111 0.00 0.00 38.27 5.19
5027 9776 2.464459 GGGCCTTGATCGCTTGTCG 61.464 63.158 0.84 0.00 40.15 4.35
5028 9777 2.115291 GGGGCCTTGATCGCTTGTC 61.115 63.158 0.84 0.00 0.00 3.18
5029 9778 2.044946 GGGGCCTTGATCGCTTGT 60.045 61.111 0.84 0.00 0.00 3.16
5030 9779 2.587322 TACGGGGCCTTGATCGCTTG 62.587 60.000 0.84 0.00 0.00 4.01
5031 9780 2.311688 CTACGGGGCCTTGATCGCTT 62.312 60.000 0.84 0.00 0.00 4.68
5032 9781 2.762459 TACGGGGCCTTGATCGCT 60.762 61.111 0.84 0.00 0.00 4.93
5033 9782 2.280186 CTACGGGGCCTTGATCGC 60.280 66.667 0.84 0.00 0.00 4.58
5034 9783 2.280186 GCTACGGGGCCTTGATCG 60.280 66.667 0.84 0.00 0.00 3.69
5035 9784 1.227674 CTGCTACGGGGCCTTGATC 60.228 63.158 0.84 0.00 0.00 2.92
5036 9785 1.056700 ATCTGCTACGGGGCCTTGAT 61.057 55.000 0.84 0.00 0.00 2.57
5037 9786 1.686325 GATCTGCTACGGGGCCTTGA 61.686 60.000 0.84 0.00 0.00 3.02
5038 9787 1.227674 GATCTGCTACGGGGCCTTG 60.228 63.158 0.84 0.00 0.00 3.61
5039 9788 1.383248 AGATCTGCTACGGGGCCTT 60.383 57.895 0.84 0.00 0.00 4.35
5040 9789 2.136878 CAGATCTGCTACGGGGCCT 61.137 63.158 10.38 0.00 0.00 5.19
5041 9790 2.134287 TCAGATCTGCTACGGGGCC 61.134 63.158 18.36 0.00 0.00 5.80
5042 9791 1.068250 GTCAGATCTGCTACGGGGC 59.932 63.158 18.36 0.00 0.00 5.80
5043 9792 0.824109 TTGTCAGATCTGCTACGGGG 59.176 55.000 18.36 0.00 0.00 5.73
5044 9793 1.804372 GCTTGTCAGATCTGCTACGGG 60.804 57.143 18.36 9.37 0.00 5.28
5045 9794 1.134995 TGCTTGTCAGATCTGCTACGG 60.135 52.381 18.36 9.68 0.00 4.02
5046 9795 2.284263 TGCTTGTCAGATCTGCTACG 57.716 50.000 18.36 7.84 0.00 3.51
5047 9796 4.248859 TCTTTGCTTGTCAGATCTGCTAC 58.751 43.478 18.36 12.33 0.00 3.58
5048 9797 4.541973 TCTTTGCTTGTCAGATCTGCTA 57.458 40.909 18.36 6.25 0.00 3.49
5049 9798 3.413846 TCTTTGCTTGTCAGATCTGCT 57.586 42.857 18.36 0.00 0.00 4.24
5050 9799 3.750130 TCTTCTTTGCTTGTCAGATCTGC 59.250 43.478 18.36 13.24 0.00 4.26
5051 9800 4.143158 CGTCTTCTTTGCTTGTCAGATCTG 60.143 45.833 17.07 17.07 0.00 2.90
5052 9801 3.993081 CGTCTTCTTTGCTTGTCAGATCT 59.007 43.478 0.00 0.00 0.00 2.75
5053 9802 3.124297 CCGTCTTCTTTGCTTGTCAGATC 59.876 47.826 0.00 0.00 0.00 2.75
5054 9803 3.070018 CCGTCTTCTTTGCTTGTCAGAT 58.930 45.455 0.00 0.00 0.00 2.90
5055 9804 2.483876 CCGTCTTCTTTGCTTGTCAGA 58.516 47.619 0.00 0.00 0.00 3.27
5056 9805 1.069636 GCCGTCTTCTTTGCTTGTCAG 60.070 52.381 0.00 0.00 0.00 3.51
5057 9806 0.944386 GCCGTCTTCTTTGCTTGTCA 59.056 50.000 0.00 0.00 0.00 3.58
5058 9807 0.110644 CGCCGTCTTCTTTGCTTGTC 60.111 55.000 0.00 0.00 0.00 3.18
5059 9808 1.941812 CGCCGTCTTCTTTGCTTGT 59.058 52.632 0.00 0.00 0.00 3.16
5060 9809 1.441016 GCGCCGTCTTCTTTGCTTG 60.441 57.895 0.00 0.00 0.00 4.01
5061 9810 2.946762 GCGCCGTCTTCTTTGCTT 59.053 55.556 0.00 0.00 0.00 3.91
5062 9811 3.414700 CGCGCCGTCTTCTTTGCT 61.415 61.111 0.00 0.00 0.00 3.91
5063 9812 4.445545 CCGCGCCGTCTTCTTTGC 62.446 66.667 0.00 0.00 0.00 3.68
5064 9813 3.788766 CCCGCGCCGTCTTCTTTG 61.789 66.667 0.00 0.00 0.00 2.77
5065 9814 3.524648 TTCCCGCGCCGTCTTCTTT 62.525 57.895 0.00 0.00 0.00 2.52
5066 9815 3.934391 CTTCCCGCGCCGTCTTCTT 62.934 63.158 0.00 0.00 0.00 2.52
5067 9816 4.436998 CTTCCCGCGCCGTCTTCT 62.437 66.667 0.00 0.00 0.00 2.85
5068 9817 3.927163 TTCTTCCCGCGCCGTCTTC 62.927 63.158 0.00 0.00 0.00 2.87
5069 9818 3.310860 ATTCTTCCCGCGCCGTCTT 62.311 57.895 0.00 0.00 0.00 3.01
5070 9819 3.718210 GATTCTTCCCGCGCCGTCT 62.718 63.158 0.00 0.00 0.00 4.18
5071 9820 3.262686 GATTCTTCCCGCGCCGTC 61.263 66.667 0.00 0.00 0.00 4.79
5072 9821 3.599285 TTGATTCTTCCCGCGCCGT 62.599 57.895 0.00 0.00 0.00 5.68
5073 9822 2.813179 CTTGATTCTTCCCGCGCCG 61.813 63.158 0.00 0.00 0.00 6.46
5074 9823 3.102097 CTTGATTCTTCCCGCGCC 58.898 61.111 0.00 0.00 0.00 6.53
5075 9824 1.922135 TTGCTTGATTCTTCCCGCGC 61.922 55.000 0.00 0.00 0.00 6.86
5076 9825 0.097674 CTTGCTTGATTCTTCCCGCG 59.902 55.000 0.00 0.00 0.00 6.46
5077 9826 0.179153 GCTTGCTTGATTCTTCCCGC 60.179 55.000 0.00 0.00 0.00 6.13
5078 9827 1.131883 CTGCTTGCTTGATTCTTCCCG 59.868 52.381 0.00 0.00 0.00 5.14
5079 9828 2.440409 TCTGCTTGCTTGATTCTTCCC 58.560 47.619 0.00 0.00 0.00 3.97
5080 9829 3.181489 CCATCTGCTTGCTTGATTCTTCC 60.181 47.826 0.00 0.00 0.00 3.46
5081 9830 3.181489 CCCATCTGCTTGCTTGATTCTTC 60.181 47.826 0.00 0.00 0.00 2.87
5082 9831 2.758979 CCCATCTGCTTGCTTGATTCTT 59.241 45.455 0.00 0.00 0.00 2.52
5083 9832 2.376109 CCCATCTGCTTGCTTGATTCT 58.624 47.619 0.00 0.00 0.00 2.40
5084 9833 1.202382 GCCCATCTGCTTGCTTGATTC 60.202 52.381 0.00 0.00 0.00 2.52
5085 9834 0.822164 GCCCATCTGCTTGCTTGATT 59.178 50.000 0.00 0.00 0.00 2.57
5086 9835 1.041447 GGCCCATCTGCTTGCTTGAT 61.041 55.000 0.00 0.00 0.00 2.57
5087 9836 1.679977 GGCCCATCTGCTTGCTTGA 60.680 57.895 0.00 0.00 0.00 3.02
5088 9837 0.394762 TAGGCCCATCTGCTTGCTTG 60.395 55.000 0.00 0.00 0.00 4.01
5089 9838 0.394899 GTAGGCCCATCTGCTTGCTT 60.395 55.000 0.00 0.00 0.00 3.91
5090 9839 1.225704 GTAGGCCCATCTGCTTGCT 59.774 57.895 0.00 0.00 0.00 3.91
5091 9840 1.825622 GGTAGGCCCATCTGCTTGC 60.826 63.158 0.00 0.00 0.00 4.01
5092 9841 4.567318 GGTAGGCCCATCTGCTTG 57.433 61.111 0.00 0.00 0.00 4.01
5125 9874 2.325082 AATGCGGTGCGTTGGTCTC 61.325 57.895 0.00 0.00 36.34 3.36
5126 9875 2.281484 AATGCGGTGCGTTGGTCT 60.281 55.556 0.00 0.00 36.34 3.85
5131 9880 1.714899 GATAGCCAATGCGGTGCGTT 61.715 55.000 0.00 0.00 44.33 4.84
5132 9881 2.124736 ATAGCCAATGCGGTGCGT 60.125 55.556 0.00 0.00 44.33 5.24
5133 9882 2.633657 GATAGCCAATGCGGTGCG 59.366 61.111 0.00 0.00 44.33 5.34
5134 9883 2.633657 CGATAGCCAATGCGGTGC 59.366 61.111 0.00 0.00 44.33 5.01
5135 9884 1.227527 TCCGATAGCCAATGCGGTG 60.228 57.895 0.00 0.00 43.92 4.94
5136 9885 1.227556 GTCCGATAGCCAATGCGGT 60.228 57.895 0.00 0.00 43.92 5.68
5137 9886 0.317160 TAGTCCGATAGCCAATGCGG 59.683 55.000 0.00 0.00 44.33 5.69
5138 9887 1.419374 GTAGTCCGATAGCCAATGCG 58.581 55.000 0.00 0.00 44.33 4.73
5139 9888 1.070134 TGGTAGTCCGATAGCCAATGC 59.930 52.381 0.00 0.00 36.30 3.56
5140 9889 2.868044 GCTGGTAGTCCGATAGCCAATG 60.868 54.545 0.00 0.00 36.30 2.82
5141 9890 1.344763 GCTGGTAGTCCGATAGCCAAT 59.655 52.381 0.00 0.00 36.30 3.16
5142 9891 0.750850 GCTGGTAGTCCGATAGCCAA 59.249 55.000 0.00 0.00 36.30 4.52
5143 9892 0.396556 TGCTGGTAGTCCGATAGCCA 60.397 55.000 0.00 0.00 36.30 4.75
5144 9893 0.315568 CTGCTGGTAGTCCGATAGCC 59.684 60.000 0.00 0.00 36.30 3.93
5145 9894 0.315568 CCTGCTGGTAGTCCGATAGC 59.684 60.000 0.51 0.00 36.30 2.97
5146 9895 0.315568 GCCTGCTGGTAGTCCGATAG 59.684 60.000 11.69 0.00 36.30 2.08
5147 9896 1.113517 GGCCTGCTGGTAGTCCGATA 61.114 60.000 11.69 0.00 36.30 2.92
5148 9897 2.435693 GGCCTGCTGGTAGTCCGAT 61.436 63.158 11.69 0.00 36.30 4.18
5149 9898 3.075005 GGCCTGCTGGTAGTCCGA 61.075 66.667 11.69 0.00 36.30 4.55
5150 9899 4.162690 GGGCCTGCTGGTAGTCCG 62.163 72.222 11.69 0.00 36.30 4.79
5151 9900 3.798511 GGGGCCTGCTGGTAGTCC 61.799 72.222 11.69 3.56 35.27 3.85
5152 9901 0.981277 TAAGGGGCCTGCTGGTAGTC 60.981 60.000 11.69 0.00 35.27 2.59
5153 9902 0.549169 TTAAGGGGCCTGCTGGTAGT 60.549 55.000 11.69 0.00 35.27 2.73
5154 9903 0.107165 GTTAAGGGGCCTGCTGGTAG 60.107 60.000 11.69 0.00 35.27 3.18
5155 9904 0.549169 AGTTAAGGGGCCTGCTGGTA 60.549 55.000 11.69 0.00 35.27 3.25
5156 9905 1.852626 AGTTAAGGGGCCTGCTGGT 60.853 57.895 11.69 0.00 35.27 4.00
5157 9906 1.379044 CAGTTAAGGGGCCTGCTGG 60.379 63.158 0.84 5.03 0.00 4.85
5158 9907 0.962356 CACAGTTAAGGGGCCTGCTG 60.962 60.000 0.84 7.56 0.00 4.41
5159 9908 1.380302 CACAGTTAAGGGGCCTGCT 59.620 57.895 0.84 0.00 0.00 4.24
5160 9909 0.539669 AACACAGTTAAGGGGCCTGC 60.540 55.000 0.84 0.00 0.00 4.85
5161 9910 2.817844 GTTAACACAGTTAAGGGGCCTG 59.182 50.000 0.84 0.00 0.00 4.85
5162 9911 2.551504 CGTTAACACAGTTAAGGGGCCT 60.552 50.000 0.84 0.00 0.00 5.19
5163 9912 1.808343 CGTTAACACAGTTAAGGGGCC 59.192 52.381 6.39 0.00 0.00 5.80
5164 9913 1.808343 CCGTTAACACAGTTAAGGGGC 59.192 52.381 23.57 5.96 36.68 5.80
5165 9914 3.069289 GACCGTTAACACAGTTAAGGGG 58.931 50.000 29.57 21.91 41.62 4.79
5166 9915 3.495753 GTGACCGTTAACACAGTTAAGGG 59.504 47.826 26.93 26.93 42.47 3.95
5167 9916 4.374399 AGTGACCGTTAACACAGTTAAGG 58.626 43.478 6.39 12.76 39.18 2.69
5168 9917 6.211515 ACTAGTGACCGTTAACACAGTTAAG 58.788 40.000 6.39 4.17 39.18 1.85
5169 9918 6.147864 ACTAGTGACCGTTAACACAGTTAA 57.852 37.500 6.39 0.00 39.18 2.01
5170 9919 5.772825 ACTAGTGACCGTTAACACAGTTA 57.227 39.130 6.39 0.00 39.18 2.24
5171 9920 4.660789 ACTAGTGACCGTTAACACAGTT 57.339 40.909 6.39 0.00 39.18 3.16
5172 9921 4.660789 AACTAGTGACCGTTAACACAGT 57.339 40.909 6.39 7.95 39.18 3.55
5173 9922 7.467557 TTTAAACTAGTGACCGTTAACACAG 57.532 36.000 6.39 0.00 39.18 3.66
5174 9923 9.195411 CTATTTAAACTAGTGACCGTTAACACA 57.805 33.333 6.39 0.00 39.18 3.72
5175 9924 9.410556 TCTATTTAAACTAGTGACCGTTAACAC 57.589 33.333 6.39 0.00 37.30 3.32
5176 9925 9.410556 GTCTATTTAAACTAGTGACCGTTAACA 57.589 33.333 6.39 0.00 0.00 2.41
5177 9926 9.410556 TGTCTATTTAAACTAGTGACCGTTAAC 57.589 33.333 0.00 0.00 0.00 2.01
5178 9927 9.979578 TTGTCTATTTAAACTAGTGACCGTTAA 57.020 29.630 0.00 0.00 0.00 2.01
5180 9929 9.498176 AATTGTCTATTTAAACTAGTGACCGTT 57.502 29.630 0.00 0.00 0.00 4.44
5181 9930 8.932791 CAATTGTCTATTTAAACTAGTGACCGT 58.067 33.333 0.00 0.00 0.00 4.83
5182 9931 7.903431 GCAATTGTCTATTTAAACTAGTGACCG 59.097 37.037 7.40 0.00 0.00 4.79
5183 9932 8.947115 AGCAATTGTCTATTTAAACTAGTGACC 58.053 33.333 7.40 0.00 0.00 4.02
5219 9968 3.504520 GTCCAAGTCCAAGCCGATAAAAA 59.495 43.478 0.00 0.00 0.00 1.94
5220 9969 3.078837 GTCCAAGTCCAAGCCGATAAAA 58.921 45.455 0.00 0.00 0.00 1.52
5221 9970 2.706890 GTCCAAGTCCAAGCCGATAAA 58.293 47.619 0.00 0.00 0.00 1.40
5222 9971 1.404986 CGTCCAAGTCCAAGCCGATAA 60.405 52.381 0.00 0.00 0.00 1.75
5223 9972 0.174845 CGTCCAAGTCCAAGCCGATA 59.825 55.000 0.00 0.00 0.00 2.92
5224 9973 1.079127 CGTCCAAGTCCAAGCCGAT 60.079 57.895 0.00 0.00 0.00 4.18
5225 9974 1.541310 ATCGTCCAAGTCCAAGCCGA 61.541 55.000 0.00 0.00 0.00 5.54
5226 9975 1.079127 ATCGTCCAAGTCCAAGCCG 60.079 57.895 0.00 0.00 0.00 5.52
5227 9976 1.026718 CCATCGTCCAAGTCCAAGCC 61.027 60.000 0.00 0.00 0.00 4.35
5228 9977 1.648467 GCCATCGTCCAAGTCCAAGC 61.648 60.000 0.00 0.00 0.00 4.01
5229 9978 0.036010 AGCCATCGTCCAAGTCCAAG 60.036 55.000 0.00 0.00 0.00 3.61
5230 9979 0.400213 AAGCCATCGTCCAAGTCCAA 59.600 50.000 0.00 0.00 0.00 3.53
5231 9980 0.036388 GAAGCCATCGTCCAAGTCCA 60.036 55.000 0.00 0.00 0.00 4.02
5232 9981 1.084370 CGAAGCCATCGTCCAAGTCC 61.084 60.000 1.56 0.00 46.52 3.85
5233 9982 2.373938 CGAAGCCATCGTCCAAGTC 58.626 57.895 1.56 0.00 46.52 3.01
5234 9983 4.598257 CGAAGCCATCGTCCAAGT 57.402 55.556 1.56 0.00 46.52 3.16
5246 9995 2.047560 ACTACAACCGGCCGAAGC 60.048 61.111 30.73 0.00 38.76 3.86
5247 9996 1.804326 CGACTACAACCGGCCGAAG 60.804 63.158 30.73 18.29 0.00 3.79
5248 9997 2.259204 CGACTACAACCGGCCGAA 59.741 61.111 30.73 5.26 0.00 4.30
5249 9998 2.985282 ACGACTACAACCGGCCGA 60.985 61.111 30.73 4.63 0.00 5.54
5250 9999 2.807895 CACGACTACAACCGGCCG 60.808 66.667 21.04 21.04 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.