Multiple sequence alignment - TraesCS6D01G237700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G237700 chr6D 100.000 5517 0 0 1 5517 336824352 336829868 0.000000e+00 10189.0
1 TraesCS6D01G237700 chr6D 87.719 57 2 2 4972 5023 384288232 384288176 1.660000e-05 62.1
2 TraesCS6D01G237700 chr6A 95.729 3489 95 27 454 3913 477130289 477133752 0.000000e+00 5568.0
3 TraesCS6D01G237700 chr6A 96.682 1055 29 4 3911 4960 477133792 477134845 0.000000e+00 1749.0
4 TraesCS6D01G237700 chr6A 89.183 453 25 7 5057 5509 477136083 477136511 1.350000e-150 544.0
5 TraesCS6D01G237700 chr6A 93.939 66 4 0 4789 4854 477135992 477136057 3.520000e-17 100.0
6 TraesCS6D01G237700 chr6A 82.456 114 19 1 85 198 479994128 479994240 1.260000e-16 99.0
7 TraesCS6D01G237700 chr6A 100.000 32 0 0 5025 5056 477134860 477134891 5.970000e-05 60.2
8 TraesCS6D01G237700 chr6B 96.534 1789 47 7 2138 3913 483606115 483604329 0.000000e+00 2946.0
9 TraesCS6D01G237700 chr6B 96.961 1053 27 4 3911 4961 483604289 483603240 0.000000e+00 1762.0
10 TraesCS6D01G237700 chr6B 93.928 1054 20 12 512 1553 483608878 483607857 0.000000e+00 1552.0
11 TraesCS6D01G237700 chr6B 96.479 426 7 4 1700 2122 483607856 483607436 0.000000e+00 697.0
12 TraesCS6D01G237700 chr6B 87.033 509 32 18 5025 5517 483603225 483602735 1.350000e-150 544.0
13 TraesCS6D01G237700 chr6B 89.796 147 14 1 191 336 483625482 483625336 2.620000e-43 187.0
14 TraesCS6D01G237700 chr7A 89.437 142 13 2 335 475 733099043 733099183 1.580000e-40 178.0
15 TraesCS6D01G237700 chr7A 91.525 118 10 0 335 452 699835297 699835414 4.420000e-36 163.0
16 TraesCS6D01G237700 chr7A 78.571 182 37 2 1 181 699363984 699364164 9.710000e-23 119.0
17 TraesCS6D01G237700 chr1B 90.840 131 11 1 333 462 630655309 630655179 2.040000e-39 174.0
18 TraesCS6D01G237700 chr1B 87.838 148 11 2 335 482 630474398 630474258 3.420000e-37 167.0
19 TraesCS6D01G237700 chr1B 78.866 194 41 0 4 197 155744520 155744327 1.250000e-26 132.0
20 TraesCS6D01G237700 chr1B 90.196 51 2 1 4969 5016 439872781 439872831 4.610000e-06 63.9
21 TraesCS6D01G237700 chr1B 86.207 58 4 1 4968 5021 112863289 112863346 5.970000e-05 60.2
22 TraesCS6D01G237700 chr3B 91.270 126 11 0 327 452 160630527 160630652 7.350000e-39 172.0
23 TraesCS6D01G237700 chr2B 79.412 238 45 4 19 254 636460978 636461213 1.230000e-36 165.0
24 TraesCS6D01G237700 chr2B 85.806 155 14 3 335 488 702713466 702713319 2.060000e-34 158.0
25 TraesCS6D01G237700 chr7D 87.671 146 11 3 335 480 139094463 139094325 4.420000e-36 163.0
26 TraesCS6D01G237700 chr7D 76.923 260 42 13 1 254 432740925 432741172 1.250000e-26 132.0
27 TraesCS6D01G237700 chr5B 86.000 150 19 2 335 484 598661466 598661319 5.720000e-35 159.0
28 TraesCS6D01G237700 chr5B 91.525 59 4 1 1820 1877 84476924 84476982 4.580000e-11 80.5
29 TraesCS6D01G237700 chr7B 84.810 158 17 7 335 492 717326142 717325992 9.570000e-33 152.0
30 TraesCS6D01G237700 chr7B 93.220 59 1 3 1822 1877 584758679 584758737 3.540000e-12 84.2
31 TraesCS6D01G237700 chr7B 97.436 39 1 0 4961 4999 707981504 707981466 3.570000e-07 67.6
32 TraesCS6D01G237700 chr5D 81.564 179 31 2 4 181 353956853 353956676 4.450000e-31 147.0
33 TraesCS6D01G237700 chr5D 87.719 57 6 1 4961 5016 399909156 399909212 1.280000e-06 65.8
34 TraesCS6D01G237700 chr1D 79.798 198 38 2 1 197 318547140 318547336 5.760000e-30 143.0
35 TraesCS6D01G237700 chr1A 80.541 185 34 2 1 184 46225055 46225238 2.070000e-29 141.0
36 TraesCS6D01G237700 chr3D 79.592 196 36 4 4 197 81832950 81832757 2.680000e-28 137.0
37 TraesCS6D01G237700 chr4D 96.226 53 2 0 1825 1877 12276148 12276200 2.740000e-13 87.9
38 TraesCS6D01G237700 chr4D 85.484 62 3 2 4968 5023 392517867 392517806 5.970000e-05 60.2
39 TraesCS6D01G237700 chr4A 98.000 50 0 1 1829 1877 183141094 183141143 9.850000e-13 86.1
40 TraesCS6D01G237700 chr4A 96.154 52 0 2 1827 1877 439011711 439011661 3.540000e-12 84.2
41 TraesCS6D01G237700 chr4A 91.525 59 3 2 1830 1887 484538619 484538676 4.580000e-11 80.5
42 TraesCS6D01G237700 chr4B 85.714 77 5 5 1802 1877 634819677 634819606 5.930000e-10 76.8
43 TraesCS6D01G237700 chr2A 90.909 55 3 1 4969 5021 585135356 585135410 7.670000e-09 73.1
44 TraesCS6D01G237700 chr2A 92.308 52 2 1 4972 5021 585135416 585135365 7.670000e-09 73.1
45 TraesCS6D01G237700 chr2D 86.441 59 3 2 4968 5021 233379754 233379696 5.970000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G237700 chr6D 336824352 336829868 5516 False 10189.00 10189 100.0000 1 5517 1 chr6D.!!$F1 5516
1 TraesCS6D01G237700 chr6A 477130289 477136511 6222 False 1604.24 5568 95.1066 454 5509 5 chr6A.!!$F2 5055
2 TraesCS6D01G237700 chr6B 483602735 483608878 6143 True 1500.20 2946 94.1870 512 5517 5 chr6B.!!$R2 5005

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
298 299 0.036448 TAACCATTCACCGCGGGAAA 59.964 50.000 31.76 22.8 0.00 3.13 F
416 417 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.0 0.00 4.02 F
443 444 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.0 46.56 4.01 F
503 504 0.370273 CGAAGATGCCTTCCGTTTCG 59.630 55.000 0.00 0.0 44.55 3.46 F
734 735 1.301716 CCCACCCTCACAAGTCACG 60.302 63.158 0.00 0.0 0.00 4.35 F
981 993 2.046892 CCGACTCTGGTGGCCTTG 60.047 66.667 3.32 0.0 0.00 3.61 F
982 994 2.046892 CGACTCTGGTGGCCTTGG 60.047 66.667 3.32 0.0 0.00 3.61 F
1231 1243 2.048127 GCCTCTGTCGTTTCCGCT 60.048 61.111 0.00 0.0 0.00 5.52 F
2221 3564 2.279741 TGCAGCCATTATCAGTCGAAC 58.720 47.619 0.00 0.0 0.00 3.95 F
2301 3653 2.423064 CCCCCGGCCTTTGCATTAC 61.423 63.158 0.00 0.0 40.13 1.89 F
2378 3730 3.133901 GGTCTTGCCAAAAAGAGGGAAAA 59.866 43.478 0.00 0.0 36.86 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1449 1461 1.078214 CGGGAAGCAAGCATCTCCA 60.078 57.895 9.21 0.00 0.00 3.86 R
1676 1709 1.888512 ACATGCAACCCTGATGTTGTC 59.111 47.619 0.00 0.13 45.80 3.18 R
2287 3639 2.734670 CATCATGTAATGCAAAGGCCG 58.265 47.619 0.00 0.00 46.21 6.13 R
2301 3653 9.726232 GTAATAATTATGGCTGTATGCATCATG 57.274 33.333 0.19 0.00 45.15 3.07 R
2632 3986 1.675310 CCGTGCTGGCAAGAATCCA 60.675 57.895 9.84 0.00 0.00 3.41 R
3021 4381 4.620982 TGGTATGCTCGACTGATTACATG 58.379 43.478 0.00 0.00 0.00 3.21 R
3063 4423 6.434028 TGCCTGCAGTGATTAGAACTTAAATT 59.566 34.615 13.81 0.00 0.00 1.82 R
3080 4440 2.582728 CTCTCTAAGAGTGCCTGCAG 57.417 55.000 6.78 6.78 37.57 4.41 R
3435 4796 0.673985 TCTGCACGCTAACTGACACT 59.326 50.000 0.00 0.00 0.00 3.55 R
4103 5508 3.769300 TCTACACCCATATCGCAGCATAT 59.231 43.478 0.00 0.00 0.00 1.78 R
4803 6209 0.663867 CGCAGCTCCTCATCTGATCG 60.664 60.000 0.00 0.00 32.26 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.788766 CTTCGGGAAGCAACGCGG 61.789 66.667 12.47 0.00 44.19 6.46
43 44 2.280797 AGCAACGCGGCTTCTCAA 60.281 55.556 12.47 0.00 42.71 3.02
44 45 2.174349 GCAACGCGGCTTCTCAAG 59.826 61.111 12.47 0.00 0.00 3.02
53 54 1.862806 GCTTCTCAAGCGTGACACC 59.137 57.895 0.00 0.00 45.74 4.16
54 55 0.601311 GCTTCTCAAGCGTGACACCT 60.601 55.000 0.00 0.00 45.74 4.00
55 56 1.423395 CTTCTCAAGCGTGACACCTC 58.577 55.000 0.00 0.00 0.00 3.85
56 57 0.318699 TTCTCAAGCGTGACACCTCG 60.319 55.000 0.00 0.00 0.00 4.63
84 85 3.520862 CCACCGCCCACATGCATC 61.521 66.667 0.00 0.00 0.00 3.91
85 86 3.879682 CACCGCCCACATGCATCG 61.880 66.667 0.00 0.00 0.00 3.84
105 106 4.033776 CCGGCCTGGCTTTGGAGA 62.034 66.667 19.68 0.00 0.00 3.71
106 107 2.034066 CGGCCTGGCTTTGGAGAA 59.966 61.111 19.68 0.00 0.00 2.87
107 108 1.603455 CGGCCTGGCTTTGGAGAAA 60.603 57.895 19.68 0.00 0.00 2.52
108 109 1.178534 CGGCCTGGCTTTGGAGAAAA 61.179 55.000 19.68 0.00 0.00 2.29
109 110 1.269958 GGCCTGGCTTTGGAGAAAAT 58.730 50.000 19.68 0.00 0.00 1.82
110 111 1.066645 GGCCTGGCTTTGGAGAAAATG 60.067 52.381 19.68 0.00 0.00 2.32
111 112 1.620323 GCCTGGCTTTGGAGAAAATGT 59.380 47.619 12.43 0.00 0.00 2.71
112 113 2.037641 GCCTGGCTTTGGAGAAAATGTT 59.962 45.455 12.43 0.00 0.00 2.71
113 114 3.656559 CCTGGCTTTGGAGAAAATGTTG 58.343 45.455 0.00 0.00 0.00 3.33
114 115 3.321682 CCTGGCTTTGGAGAAAATGTTGA 59.678 43.478 0.00 0.00 0.00 3.18
115 116 4.020839 CCTGGCTTTGGAGAAAATGTTGAT 60.021 41.667 0.00 0.00 0.00 2.57
116 117 5.511888 CCTGGCTTTGGAGAAAATGTTGATT 60.512 40.000 0.00 0.00 0.00 2.57
117 118 5.540911 TGGCTTTGGAGAAAATGTTGATTC 58.459 37.500 0.00 0.00 0.00 2.52
118 119 4.931601 GGCTTTGGAGAAAATGTTGATTCC 59.068 41.667 0.00 0.00 0.00 3.01
119 120 5.511202 GGCTTTGGAGAAAATGTTGATTCCA 60.511 40.000 0.00 0.00 33.17 3.53
120 121 5.636543 GCTTTGGAGAAAATGTTGATTCCAG 59.363 40.000 0.00 0.00 36.22 3.86
121 122 4.789012 TGGAGAAAATGTTGATTCCAGC 57.211 40.909 0.00 0.00 31.50 4.85
122 123 3.191162 TGGAGAAAATGTTGATTCCAGCG 59.809 43.478 0.00 0.00 31.50 5.18
123 124 3.191371 GGAGAAAATGTTGATTCCAGCGT 59.809 43.478 0.00 0.00 0.00 5.07
124 125 4.321230 GGAGAAAATGTTGATTCCAGCGTT 60.321 41.667 0.00 0.00 34.78 4.84
125 126 4.798574 AGAAAATGTTGATTCCAGCGTTC 58.201 39.130 0.00 0.00 32.62 3.95
126 127 3.575965 AAATGTTGATTCCAGCGTTCC 57.424 42.857 0.00 0.00 32.62 3.62
127 128 1.463674 ATGTTGATTCCAGCGTTCCC 58.536 50.000 0.00 0.00 0.00 3.97
128 129 0.109532 TGTTGATTCCAGCGTTCCCA 59.890 50.000 0.00 0.00 0.00 4.37
129 130 0.804989 GTTGATTCCAGCGTTCCCAG 59.195 55.000 0.00 0.00 0.00 4.45
130 131 0.960364 TTGATTCCAGCGTTCCCAGC 60.960 55.000 0.00 0.00 0.00 4.85
131 132 2.436646 ATTCCAGCGTTCCCAGCG 60.437 61.111 0.00 0.00 40.04 5.18
132 133 2.852495 GATTCCAGCGTTCCCAGCGA 62.852 60.000 0.00 0.00 40.04 4.93
133 134 2.859273 ATTCCAGCGTTCCCAGCGAG 62.859 60.000 0.00 0.00 40.04 5.03
134 135 4.069232 CCAGCGTTCCCAGCGAGA 62.069 66.667 0.00 0.00 40.04 4.04
135 136 2.811317 CAGCGTTCCCAGCGAGAC 60.811 66.667 0.00 0.00 40.04 3.36
136 137 3.303135 AGCGTTCCCAGCGAGACA 61.303 61.111 0.00 0.00 40.04 3.41
137 138 2.811317 GCGTTCCCAGCGAGACAG 60.811 66.667 0.00 0.00 0.00 3.51
138 139 2.125912 CGTTCCCAGCGAGACAGG 60.126 66.667 0.00 0.00 0.00 4.00
139 140 2.435059 GTTCCCAGCGAGACAGGC 60.435 66.667 0.00 0.00 0.00 4.85
140 141 4.069232 TTCCCAGCGAGACAGGCG 62.069 66.667 0.00 0.00 35.00 5.52
147 148 2.804167 CGAGACAGGCGCAGAGAT 59.196 61.111 10.83 0.00 0.00 2.75
148 149 1.588403 CGAGACAGGCGCAGAGATG 60.588 63.158 10.83 1.70 0.00 2.90
149 150 1.882167 GAGACAGGCGCAGAGATGC 60.882 63.158 10.83 0.00 0.00 3.91
150 151 2.186384 GACAGGCGCAGAGATGCT 59.814 61.111 10.83 0.00 0.00 3.79
151 152 1.882167 GACAGGCGCAGAGATGCTC 60.882 63.158 10.83 0.00 0.00 4.26
152 153 2.295472 GACAGGCGCAGAGATGCTCT 62.295 60.000 10.83 0.00 42.11 4.09
163 164 2.935201 AGAGATGCTCTGAATTTCGTGC 59.065 45.455 0.00 7.73 39.62 5.34
164 165 2.935201 GAGATGCTCTGAATTTCGTGCT 59.065 45.455 12.73 0.00 0.00 4.40
165 166 4.115516 GAGATGCTCTGAATTTCGTGCTA 58.884 43.478 12.73 4.71 0.00 3.49
166 167 4.701765 AGATGCTCTGAATTTCGTGCTAT 58.298 39.130 12.73 7.62 0.00 2.97
167 168 4.510711 AGATGCTCTGAATTTCGTGCTATG 59.489 41.667 12.73 0.00 0.00 2.23
168 169 2.352651 TGCTCTGAATTTCGTGCTATGC 59.647 45.455 12.73 0.00 0.00 3.14
169 170 2.352651 GCTCTGAATTTCGTGCTATGCA 59.647 45.455 0.00 0.00 35.60 3.96
170 171 3.545624 GCTCTGAATTTCGTGCTATGCAG 60.546 47.826 0.00 0.00 40.08 4.41
171 172 2.938451 TCTGAATTTCGTGCTATGCAGG 59.062 45.455 5.97 5.97 44.42 4.85
172 173 1.401552 TGAATTTCGTGCTATGCAGGC 59.598 47.619 7.40 7.40 43.03 4.85
173 174 0.740737 AATTTCGTGCTATGCAGGCC 59.259 50.000 11.16 0.00 43.03 5.19
174 175 1.103398 ATTTCGTGCTATGCAGGCCC 61.103 55.000 0.00 0.12 43.03 5.80
175 176 2.476852 TTTCGTGCTATGCAGGCCCA 62.477 55.000 0.00 0.00 43.03 5.36
176 177 2.438254 CGTGCTATGCAGGCCCAA 60.438 61.111 0.00 0.00 40.08 4.12
177 178 1.825191 CGTGCTATGCAGGCCCAAT 60.825 57.895 0.00 0.00 40.08 3.16
178 179 0.534877 CGTGCTATGCAGGCCCAATA 60.535 55.000 0.00 0.00 40.08 1.90
179 180 1.242076 GTGCTATGCAGGCCCAATAG 58.758 55.000 0.00 5.83 40.08 1.73
180 181 0.846015 TGCTATGCAGGCCCAATAGT 59.154 50.000 14.97 0.00 33.32 2.12
181 182 2.054021 TGCTATGCAGGCCCAATAGTA 58.946 47.619 14.97 9.96 33.32 1.82
182 183 2.441375 TGCTATGCAGGCCCAATAGTAA 59.559 45.455 14.97 5.22 33.32 2.24
183 184 3.117701 TGCTATGCAGGCCCAATAGTAAA 60.118 43.478 14.97 3.41 33.32 2.01
184 185 3.253432 GCTATGCAGGCCCAATAGTAAAC 59.747 47.826 14.97 0.18 0.00 2.01
185 186 1.745232 TGCAGGCCCAATAGTAAACG 58.255 50.000 0.00 0.00 0.00 3.60
186 187 1.003812 TGCAGGCCCAATAGTAAACGT 59.996 47.619 0.00 0.00 0.00 3.99
187 188 2.236644 TGCAGGCCCAATAGTAAACGTA 59.763 45.455 0.00 0.00 0.00 3.57
188 189 2.870411 GCAGGCCCAATAGTAAACGTAG 59.130 50.000 0.00 0.00 0.00 3.51
190 191 4.117685 CAGGCCCAATAGTAAACGTAGTC 58.882 47.826 0.00 0.00 45.00 2.59
191 192 3.770933 AGGCCCAATAGTAAACGTAGTCA 59.229 43.478 0.00 0.00 45.00 3.41
192 193 4.223477 AGGCCCAATAGTAAACGTAGTCAA 59.777 41.667 0.00 0.00 45.00 3.18
193 194 4.330894 GGCCCAATAGTAAACGTAGTCAAC 59.669 45.833 0.00 0.00 45.00 3.18
194 195 4.330894 GCCCAATAGTAAACGTAGTCAACC 59.669 45.833 0.00 0.00 45.00 3.77
195 196 5.481105 CCCAATAGTAAACGTAGTCAACCA 58.519 41.667 0.00 0.00 45.00 3.67
196 197 5.933463 CCCAATAGTAAACGTAGTCAACCAA 59.067 40.000 0.00 0.00 45.00 3.67
197 198 6.427547 CCCAATAGTAAACGTAGTCAACCAAA 59.572 38.462 0.00 0.00 45.00 3.28
198 199 7.120138 CCCAATAGTAAACGTAGTCAACCAAAT 59.880 37.037 0.00 0.00 45.00 2.32
199 200 7.960738 CCAATAGTAAACGTAGTCAACCAAATG 59.039 37.037 0.00 0.00 45.00 2.32
200 201 8.714179 CAATAGTAAACGTAGTCAACCAAATGA 58.286 33.333 0.00 0.00 45.00 2.57
201 202 8.836268 ATAGTAAACGTAGTCAACCAAATGAA 57.164 30.769 0.00 0.00 45.00 2.57
202 203 7.739498 AGTAAACGTAGTCAACCAAATGAAT 57.261 32.000 0.00 0.00 45.00 2.57
203 204 7.803724 AGTAAACGTAGTCAACCAAATGAATC 58.196 34.615 0.00 0.00 45.00 2.52
204 205 6.627395 AAACGTAGTCAACCAAATGAATCA 57.373 33.333 0.00 0.00 45.00 2.57
205 206 6.817765 AACGTAGTCAACCAAATGAATCAT 57.182 33.333 0.00 0.00 45.00 2.45
206 207 7.915293 AACGTAGTCAACCAAATGAATCATA 57.085 32.000 0.00 0.00 45.00 2.15
207 208 7.915293 ACGTAGTCAACCAAATGAATCATAA 57.085 32.000 0.00 0.00 29.74 1.90
208 209 8.506168 ACGTAGTCAACCAAATGAATCATAAT 57.494 30.769 0.00 0.00 29.74 1.28
209 210 8.612619 ACGTAGTCAACCAAATGAATCATAATC 58.387 33.333 0.00 0.00 29.74 1.75
210 211 8.830580 CGTAGTCAACCAAATGAATCATAATCT 58.169 33.333 0.00 0.00 0.00 2.40
214 215 9.305925 GTCAACCAAATGAATCATAATCTTTCC 57.694 33.333 0.00 0.00 0.00 3.13
215 216 9.033711 TCAACCAAATGAATCATAATCTTTCCA 57.966 29.630 0.00 0.00 0.00 3.53
216 217 9.090692 CAACCAAATGAATCATAATCTTTCCAC 57.909 33.333 0.00 0.00 0.00 4.02
217 218 8.365060 ACCAAATGAATCATAATCTTTCCACA 57.635 30.769 0.00 0.00 0.00 4.17
218 219 8.984855 ACCAAATGAATCATAATCTTTCCACAT 58.015 29.630 0.00 0.00 0.00 3.21
219 220 9.256477 CCAAATGAATCATAATCTTTCCACATG 57.744 33.333 0.00 0.00 0.00 3.21
220 221 9.256477 CAAATGAATCATAATCTTTCCACATGG 57.744 33.333 0.00 0.00 0.00 3.66
221 222 8.771521 AATGAATCATAATCTTTCCACATGGA 57.228 30.769 0.00 0.00 43.73 3.41
222 223 7.572523 TGAATCATAATCTTTCCACATGGAC 57.427 36.000 0.00 0.00 45.39 4.02
223 224 6.547141 TGAATCATAATCTTTCCACATGGACC 59.453 38.462 0.00 0.00 45.39 4.46
224 225 5.715439 TCATAATCTTTCCACATGGACCT 57.285 39.130 0.00 0.00 45.39 3.85
225 226 5.439721 TCATAATCTTTCCACATGGACCTG 58.560 41.667 0.00 0.00 45.39 4.00
226 227 2.814805 ATCTTTCCACATGGACCTGG 57.185 50.000 0.00 0.00 45.39 4.45
227 228 1.444933 TCTTTCCACATGGACCTGGT 58.555 50.000 0.00 0.00 45.39 4.00
228 229 1.780309 TCTTTCCACATGGACCTGGTT 59.220 47.619 0.00 0.00 45.39 3.67
229 230 1.888512 CTTTCCACATGGACCTGGTTG 59.111 52.381 0.00 0.00 45.39 3.77
230 231 0.112218 TTCCACATGGACCTGGTTGG 59.888 55.000 0.00 4.28 45.39 3.77
231 232 1.978617 CCACATGGACCTGGTTGGC 60.979 63.158 0.00 0.00 40.22 4.52
232 233 1.228521 CACATGGACCTGGTTGGCA 60.229 57.895 0.00 0.00 40.22 4.92
233 234 0.612732 CACATGGACCTGGTTGGCAT 60.613 55.000 0.00 0.00 40.22 4.40
234 235 0.612732 ACATGGACCTGGTTGGCATG 60.613 55.000 0.00 0.00 40.16 4.06
235 236 0.612732 CATGGACCTGGTTGGCATGT 60.613 55.000 0.00 0.00 40.22 3.21
236 237 0.998928 ATGGACCTGGTTGGCATGTA 59.001 50.000 0.00 0.00 40.22 2.29
237 238 0.998928 TGGACCTGGTTGGCATGTAT 59.001 50.000 0.00 0.00 40.22 2.29
238 239 1.357420 TGGACCTGGTTGGCATGTATT 59.643 47.619 0.00 0.00 40.22 1.89
239 240 2.024414 GGACCTGGTTGGCATGTATTC 58.976 52.381 0.00 0.00 40.22 1.75
240 241 2.620367 GGACCTGGTTGGCATGTATTCA 60.620 50.000 0.00 0.00 40.22 2.57
241 242 2.684881 GACCTGGTTGGCATGTATTCAG 59.315 50.000 0.00 0.00 40.22 3.02
242 243 2.026641 CCTGGTTGGCATGTATTCAGG 58.973 52.381 0.00 2.49 35.08 3.86
252 253 4.517952 CATGTATTCAGGCAACCAAACA 57.482 40.909 0.00 0.00 37.17 2.83
253 254 4.236935 CATGTATTCAGGCAACCAAACAC 58.763 43.478 0.00 0.00 37.17 3.32
254 255 3.291584 TGTATTCAGGCAACCAAACACA 58.708 40.909 0.00 0.00 37.17 3.72
255 256 3.894427 TGTATTCAGGCAACCAAACACAT 59.106 39.130 0.00 0.00 37.17 3.21
256 257 2.886862 TTCAGGCAACCAAACACATG 57.113 45.000 0.00 0.00 37.17 3.21
257 258 1.774110 TCAGGCAACCAAACACATGT 58.226 45.000 0.00 0.00 37.17 3.21
258 259 2.106566 TCAGGCAACCAAACACATGTT 58.893 42.857 0.00 0.00 37.22 2.71
259 260 3.291584 TCAGGCAACCAAACACATGTTA 58.708 40.909 0.00 0.00 35.01 2.41
260 261 3.317711 TCAGGCAACCAAACACATGTTAG 59.682 43.478 0.00 0.00 35.01 2.34
261 262 2.627699 AGGCAACCAAACACATGTTAGG 59.372 45.455 0.00 0.00 35.01 2.69
262 263 2.364002 GGCAACCAAACACATGTTAGGT 59.636 45.455 0.00 0.00 37.25 3.08
263 264 3.380142 GCAACCAAACACATGTTAGGTG 58.620 45.455 0.00 3.38 41.95 4.00
270 271 3.207265 ACACATGTTAGGTGTCTTGCA 57.793 42.857 0.00 0.00 45.89 4.08
271 272 3.550820 ACACATGTTAGGTGTCTTGCAA 58.449 40.909 0.00 0.00 45.89 4.08
272 273 3.565482 ACACATGTTAGGTGTCTTGCAAG 59.435 43.478 20.81 20.81 45.89 4.01
273 274 3.814842 CACATGTTAGGTGTCTTGCAAGA 59.185 43.478 25.16 25.16 0.00 3.02
284 285 3.394674 TCTTGCAAGACATCGTAACCA 57.605 42.857 25.16 0.00 0.00 3.67
285 286 3.937814 TCTTGCAAGACATCGTAACCAT 58.062 40.909 25.16 0.00 0.00 3.55
286 287 4.323417 TCTTGCAAGACATCGTAACCATT 58.677 39.130 25.16 0.00 0.00 3.16
287 288 4.391830 TCTTGCAAGACATCGTAACCATTC 59.608 41.667 25.16 0.00 0.00 2.67
288 289 3.669536 TGCAAGACATCGTAACCATTCA 58.330 40.909 0.00 0.00 0.00 2.57
289 290 3.435327 TGCAAGACATCGTAACCATTCAC 59.565 43.478 0.00 0.00 0.00 3.18
290 291 3.181510 GCAAGACATCGTAACCATTCACC 60.182 47.826 0.00 0.00 0.00 4.02
291 292 2.888594 AGACATCGTAACCATTCACCG 58.111 47.619 0.00 0.00 0.00 4.94
292 293 1.326548 GACATCGTAACCATTCACCGC 59.673 52.381 0.00 0.00 0.00 5.68
293 294 0.300491 CATCGTAACCATTCACCGCG 59.700 55.000 0.00 0.00 0.00 6.46
294 295 0.808453 ATCGTAACCATTCACCGCGG 60.808 55.000 26.86 26.86 0.00 6.46
295 296 2.457778 CGTAACCATTCACCGCGGG 61.458 63.158 31.76 18.67 0.00 6.13
296 297 1.078988 GTAACCATTCACCGCGGGA 60.079 57.895 31.76 20.83 0.00 5.14
297 298 0.674269 GTAACCATTCACCGCGGGAA 60.674 55.000 31.76 27.61 0.00 3.97
298 299 0.036448 TAACCATTCACCGCGGGAAA 59.964 50.000 31.76 22.80 0.00 3.13
299 300 0.824182 AACCATTCACCGCGGGAAAA 60.824 50.000 31.76 20.12 0.00 2.29
300 301 0.824182 ACCATTCACCGCGGGAAAAA 60.824 50.000 31.76 17.48 0.00 1.94
323 324 6.743575 AAATTATAGCGCAGACAAGAAAGT 57.256 33.333 11.47 0.00 0.00 2.66
324 325 6.743575 AATTATAGCGCAGACAAGAAAGTT 57.256 33.333 11.47 0.00 0.00 2.66
325 326 5.779806 TTATAGCGCAGACAAGAAAGTTC 57.220 39.130 11.47 0.00 0.00 3.01
326 327 2.246719 AGCGCAGACAAGAAAGTTCT 57.753 45.000 11.47 0.00 39.74 3.01
357 358 9.248291 ACATAAATTTCAAAATGATATGTCGGC 57.752 29.630 14.93 0.00 37.50 5.54
358 359 9.467258 CATAAATTTCAAAATGATATGTCGGCT 57.533 29.630 0.00 0.00 31.31 5.52
359 360 7.992180 AAATTTCAAAATGATATGTCGGCTC 57.008 32.000 0.00 0.00 0.00 4.70
360 361 6.698008 ATTTCAAAATGATATGTCGGCTCA 57.302 33.333 0.00 0.00 0.00 4.26
361 362 5.739752 TTCAAAATGATATGTCGGCTCAG 57.260 39.130 0.00 0.00 0.00 3.35
362 363 4.769688 TCAAAATGATATGTCGGCTCAGT 58.230 39.130 0.00 0.00 0.00 3.41
363 364 5.912892 TCAAAATGATATGTCGGCTCAGTA 58.087 37.500 0.00 0.00 0.00 2.74
364 365 6.524734 TCAAAATGATATGTCGGCTCAGTAT 58.475 36.000 0.00 0.00 0.00 2.12
365 366 6.992123 TCAAAATGATATGTCGGCTCAGTATT 59.008 34.615 0.00 0.00 0.00 1.89
366 367 7.498900 TCAAAATGATATGTCGGCTCAGTATTT 59.501 33.333 0.00 0.00 0.00 1.40
367 368 7.807977 AAATGATATGTCGGCTCAGTATTTT 57.192 32.000 0.00 0.00 0.00 1.82
368 369 6.791887 ATGATATGTCGGCTCAGTATTTTG 57.208 37.500 0.00 0.00 0.00 2.44
369 370 5.056480 TGATATGTCGGCTCAGTATTTTGG 58.944 41.667 0.00 0.00 0.00 3.28
370 371 3.627395 ATGTCGGCTCAGTATTTTGGA 57.373 42.857 0.00 0.00 0.00 3.53
371 372 2.972625 TGTCGGCTCAGTATTTTGGAG 58.027 47.619 0.00 0.00 0.00 3.86
372 373 2.280628 GTCGGCTCAGTATTTTGGAGG 58.719 52.381 0.00 0.00 0.00 4.30
373 374 1.906574 TCGGCTCAGTATTTTGGAGGT 59.093 47.619 0.00 0.00 0.00 3.85
374 375 2.009774 CGGCTCAGTATTTTGGAGGTG 58.990 52.381 0.00 0.00 0.00 4.00
375 376 1.745653 GGCTCAGTATTTTGGAGGTGC 59.254 52.381 0.00 0.00 0.00 5.01
376 377 2.619074 GGCTCAGTATTTTGGAGGTGCT 60.619 50.000 0.00 0.00 0.00 4.40
377 378 2.680339 GCTCAGTATTTTGGAGGTGCTC 59.320 50.000 0.00 0.00 0.00 4.26
378 379 3.869912 GCTCAGTATTTTGGAGGTGCTCA 60.870 47.826 0.00 0.00 31.08 4.26
379 380 4.521146 CTCAGTATTTTGGAGGTGCTCAT 58.479 43.478 0.00 0.00 31.08 2.90
380 381 5.674525 CTCAGTATTTTGGAGGTGCTCATA 58.325 41.667 0.00 0.00 31.08 2.15
381 382 6.061022 TCAGTATTTTGGAGGTGCTCATAA 57.939 37.500 0.00 0.00 31.08 1.90
382 383 6.480763 TCAGTATTTTGGAGGTGCTCATAAA 58.519 36.000 0.00 0.00 31.08 1.40
383 384 6.945435 TCAGTATTTTGGAGGTGCTCATAAAA 59.055 34.615 0.00 0.00 34.87 1.52
384 385 7.121168 TCAGTATTTTGGAGGTGCTCATAAAAG 59.879 37.037 0.00 0.00 34.34 2.27
385 386 6.948309 AGTATTTTGGAGGTGCTCATAAAAGT 59.052 34.615 0.00 0.00 34.34 2.66
386 387 8.107095 AGTATTTTGGAGGTGCTCATAAAAGTA 58.893 33.333 0.00 0.00 34.34 2.24
387 388 6.817765 TTTTGGAGGTGCTCATAAAAGTAG 57.182 37.500 0.00 0.00 30.57 2.57
388 389 4.487714 TGGAGGTGCTCATAAAAGTAGG 57.512 45.455 0.00 0.00 31.08 3.18
389 390 4.101114 TGGAGGTGCTCATAAAAGTAGGA 58.899 43.478 0.00 0.00 31.08 2.94
390 391 4.721776 TGGAGGTGCTCATAAAAGTAGGAT 59.278 41.667 0.00 0.00 31.08 3.24
391 392 5.059833 GGAGGTGCTCATAAAAGTAGGATG 58.940 45.833 0.00 0.00 31.08 3.51
392 393 5.396884 GGAGGTGCTCATAAAAGTAGGATGT 60.397 44.000 0.00 0.00 31.08 3.06
393 394 5.431765 AGGTGCTCATAAAAGTAGGATGTG 58.568 41.667 0.00 0.00 0.00 3.21
394 395 4.035675 GGTGCTCATAAAAGTAGGATGTGC 59.964 45.833 0.00 0.00 39.41 4.57
395 396 3.871006 TGCTCATAAAAGTAGGATGTGCG 59.129 43.478 0.00 0.00 40.98 5.34
396 397 3.871594 GCTCATAAAAGTAGGATGTGCGT 59.128 43.478 0.00 0.00 32.41 5.24
397 398 4.260375 GCTCATAAAAGTAGGATGTGCGTG 60.260 45.833 0.00 0.00 32.41 5.34
398 399 4.827692 TCATAAAAGTAGGATGTGCGTGT 58.172 39.130 0.00 0.00 0.00 4.49
399 400 4.629634 TCATAAAAGTAGGATGTGCGTGTG 59.370 41.667 0.00 0.00 0.00 3.82
400 401 2.543777 AAAGTAGGATGTGCGTGTGT 57.456 45.000 0.00 0.00 0.00 3.72
401 402 1.795768 AAGTAGGATGTGCGTGTGTG 58.204 50.000 0.00 0.00 0.00 3.82
402 403 0.670546 AGTAGGATGTGCGTGTGTGC 60.671 55.000 0.00 0.00 0.00 4.57
403 404 1.736282 TAGGATGTGCGTGTGTGCG 60.736 57.895 0.00 0.00 37.81 5.34
404 405 2.428960 TAGGATGTGCGTGTGTGCGT 62.429 55.000 0.00 0.00 37.81 5.24
405 406 2.631428 GATGTGCGTGTGTGCGTT 59.369 55.556 0.00 0.00 37.81 4.84
406 407 1.438710 GATGTGCGTGTGTGCGTTC 60.439 57.895 0.00 0.00 37.81 3.95
407 408 2.100024 GATGTGCGTGTGTGCGTTCA 62.100 55.000 0.00 0.00 37.81 3.18
408 409 1.506309 ATGTGCGTGTGTGCGTTCAT 61.506 50.000 0.00 0.00 37.81 2.57
409 410 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
410 411 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
411 412 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
412 413 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
413 414 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
414 415 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
415 416 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
416 417 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
417 418 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
418 419 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
419 420 1.479323 GTGCGTTCATAGGGGTGAGTA 59.521 52.381 0.00 0.00 0.00 2.59
420 421 2.102588 GTGCGTTCATAGGGGTGAGTAT 59.897 50.000 0.00 0.00 0.00 2.12
421 422 3.319972 GTGCGTTCATAGGGGTGAGTATA 59.680 47.826 0.00 0.00 0.00 1.47
422 423 4.021368 GTGCGTTCATAGGGGTGAGTATAT 60.021 45.833 0.00 0.00 0.00 0.86
423 424 4.021456 TGCGTTCATAGGGGTGAGTATATG 60.021 45.833 0.00 0.00 0.00 1.78
424 425 4.495422 CGTTCATAGGGGTGAGTATATGC 58.505 47.826 0.00 0.00 0.00 3.14
425 426 4.495422 GTTCATAGGGGTGAGTATATGCG 58.505 47.826 0.00 0.00 0.00 4.73
426 427 2.496070 TCATAGGGGTGAGTATATGCGC 59.504 50.000 0.00 0.00 0.00 6.09
427 428 0.885879 TAGGGGTGAGTATATGCGCG 59.114 55.000 0.00 0.00 0.00 6.86
428 429 1.113517 AGGGGTGAGTATATGCGCGT 61.114 55.000 8.43 7.55 0.00 6.01
429 430 0.944311 GGGGTGAGTATATGCGCGTG 60.944 60.000 13.61 0.00 0.00 5.34
430 431 0.249322 GGGTGAGTATATGCGCGTGT 60.249 55.000 13.61 8.52 0.00 4.49
431 432 1.001048 GGGTGAGTATATGCGCGTGTA 60.001 52.381 13.61 7.27 0.00 2.90
432 433 2.352421 GGGTGAGTATATGCGCGTGTAT 60.352 50.000 13.61 9.22 0.00 2.29
433 434 3.119743 GGGTGAGTATATGCGCGTGTATA 60.120 47.826 13.61 9.23 0.00 1.47
434 435 4.439700 GGGTGAGTATATGCGCGTGTATAT 60.440 45.833 20.79 20.79 37.23 0.86
435 436 4.499399 GGTGAGTATATGCGCGTGTATATG 59.501 45.833 24.28 0.00 34.71 1.78
436 437 5.329493 GTGAGTATATGCGCGTGTATATGA 58.671 41.667 24.28 9.82 34.71 2.15
437 438 5.452623 GTGAGTATATGCGCGTGTATATGAG 59.547 44.000 24.28 0.00 34.71 2.90
438 439 4.352039 AGTATATGCGCGTGTATATGAGC 58.648 43.478 24.28 15.73 38.85 4.26
441 442 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
442 443 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
443 444 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
444 445 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
445 446 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
446 447 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
447 448 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
448 449 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
449 450 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
450 451 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
451 452 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
452 453 2.680312 ATGAGCGCTTGTGTCTGTAT 57.320 45.000 13.26 0.00 0.00 2.29
453 454 2.455674 TGAGCGCTTGTGTCTGTATT 57.544 45.000 13.26 0.00 0.00 1.89
454 455 2.766313 TGAGCGCTTGTGTCTGTATTT 58.234 42.857 13.26 0.00 0.00 1.40
455 456 2.480037 TGAGCGCTTGTGTCTGTATTTG 59.520 45.455 13.26 0.00 0.00 2.32
456 457 2.480419 GAGCGCTTGTGTCTGTATTTGT 59.520 45.455 13.26 0.00 0.00 2.83
457 458 3.659786 AGCGCTTGTGTCTGTATTTGTA 58.340 40.909 2.64 0.00 0.00 2.41
458 459 3.432252 AGCGCTTGTGTCTGTATTTGTAC 59.568 43.478 2.64 0.00 0.00 2.90
459 460 3.432252 GCGCTTGTGTCTGTATTTGTACT 59.568 43.478 0.00 0.00 0.00 2.73
460 461 4.666655 GCGCTTGTGTCTGTATTTGTACTG 60.667 45.833 0.00 0.00 0.00 2.74
461 462 4.684242 CGCTTGTGTCTGTATTTGTACTGA 59.316 41.667 0.00 0.00 0.00 3.41
462 463 5.348724 CGCTTGTGTCTGTATTTGTACTGAT 59.651 40.000 0.00 0.00 32.08 2.90
503 504 0.370273 CGAAGATGCCTTCCGTTTCG 59.630 55.000 0.00 0.00 44.55 3.46
505 506 1.393883 GAAGATGCCTTCCGTTTCGTC 59.606 52.381 0.00 0.00 42.24 4.20
563 564 6.433404 ACGTATAATCGTGGACTATTCTCCAT 59.567 38.462 0.00 0.00 42.50 3.41
624 625 1.673808 GACCCCACTGCCGTAGTAGG 61.674 65.000 4.02 4.02 37.60 3.18
734 735 1.301716 CCCACCCTCACAAGTCACG 60.302 63.158 0.00 0.00 0.00 4.35
981 993 2.046892 CCGACTCTGGTGGCCTTG 60.047 66.667 3.32 0.00 0.00 3.61
982 994 2.046892 CGACTCTGGTGGCCTTGG 60.047 66.667 3.32 0.00 0.00 3.61
1231 1243 2.048127 GCCTCTGTCGTTTCCGCT 60.048 61.111 0.00 0.00 0.00 5.52
1449 1461 4.917906 ATCTGGCTTTAACAGAGGTTCT 57.082 40.909 0.00 0.00 46.98 3.01
1517 1530 7.493743 TTTATGTTTTAGCCTACACGACAAA 57.506 32.000 0.00 0.00 0.00 2.83
1522 1535 5.856126 TTTAGCCTACACGACAAATTCAG 57.144 39.130 0.00 0.00 0.00 3.02
1539 1552 7.981225 ACAAATTCAGTTGTGCAGAGTATTTTT 59.019 29.630 0.00 0.00 40.22 1.94
1584 1597 2.665537 CGACTGATCAGTGAAAGTGCTC 59.334 50.000 32.50 13.46 42.66 4.26
1632 1645 7.847711 TGAATGGTTCCTTCCTTTAATTTCA 57.152 32.000 0.00 0.00 0.00 2.69
1676 1709 3.447742 TGTACAGATGTATTGCTCGCTG 58.552 45.455 0.00 0.00 32.54 5.18
2136 3478 2.878406 TGAAGTTGCAAGCTCACTAACC 59.122 45.455 0.00 0.00 0.00 2.85
2161 3503 5.099042 ACTAAGCACATTAACTCCGGAAT 57.901 39.130 5.23 0.00 0.00 3.01
2218 3561 5.618056 ATTTATGCAGCCATTATCAGTCG 57.382 39.130 0.00 0.00 32.85 4.18
2221 3564 2.279741 TGCAGCCATTATCAGTCGAAC 58.720 47.619 0.00 0.00 0.00 3.95
2287 3639 6.127253 GGAAGCTTTTACCTTTTATTACCCCC 60.127 42.308 0.00 0.00 0.00 5.40
2301 3653 2.423064 CCCCCGGCCTTTGCATTAC 61.423 63.158 0.00 0.00 40.13 1.89
2378 3730 3.133901 GGTCTTGCCAAAAAGAGGGAAAA 59.866 43.478 0.00 0.00 36.86 2.29
2509 3862 6.222389 TGAAATGGTTTGCTTTTATGTCTGG 58.778 36.000 0.00 0.00 0.00 3.86
2632 3986 8.627208 TGAATTGCTTGAGAGAAGTTAGAATT 57.373 30.769 0.00 0.00 0.00 2.17
2878 4238 3.766068 TTGCATTGCCAAAATTCCTCA 57.234 38.095 6.12 0.00 0.00 3.86
3051 4411 3.935203 CAGTCGAGCATACCATTCTTTGT 59.065 43.478 0.00 0.00 0.00 2.83
3063 4423 8.783093 CATACCATTCTTTGTCAGACTAAAACA 58.217 33.333 1.31 0.00 0.00 2.83
3435 4796 5.923733 TTTTTGTTCCCTCAAAGCAGTTA 57.076 34.783 0.00 0.00 38.32 2.24
3747 5108 8.535335 TGAGATAAGAATTACAAGAGCTGTTCT 58.465 33.333 0.00 0.00 39.64 3.01
4041 5446 5.233957 TCTTGTCCATATCATTTGCAACG 57.766 39.130 0.00 0.00 0.00 4.10
4082 5487 6.332976 AGTGATAATTGGGATTCTGTTCCT 57.667 37.500 0.00 0.00 35.97 3.36
4103 5508 6.899089 TCCTGCTTGATGATGGTTCTTTATA 58.101 36.000 0.00 0.00 0.00 0.98
4823 6229 0.319727 GATCAGATGAGGAGCTGCGG 60.320 60.000 0.00 0.00 35.44 5.69
4871 6279 0.391130 ACAAATCGCCAGCGCTTCTA 60.391 50.000 7.50 0.00 39.59 2.10
4898 6306 1.318576 CACTGTGTTCCCCACTTTCC 58.681 55.000 0.00 0.00 44.81 3.13
4925 6333 2.224843 TGGATTGCTCTTCAGCCTTTGA 60.225 45.455 0.00 0.00 46.26 2.69
4960 6368 2.036089 GTCCTCACATTATCTCCGTCCC 59.964 54.545 0.00 0.00 0.00 4.46
4961 6369 2.039418 CCTCACATTATCTCCGTCCCA 58.961 52.381 0.00 0.00 0.00 4.37
4962 6370 2.434336 CCTCACATTATCTCCGTCCCAA 59.566 50.000 0.00 0.00 0.00 4.12
4963 6371 3.118408 CCTCACATTATCTCCGTCCCAAA 60.118 47.826 0.00 0.00 0.00 3.28
4964 6372 4.513442 CTCACATTATCTCCGTCCCAAAA 58.487 43.478 0.00 0.00 0.00 2.44
4965 6373 5.110814 TCACATTATCTCCGTCCCAAAAT 57.889 39.130 0.00 0.00 0.00 1.82
4966 6374 4.881273 TCACATTATCTCCGTCCCAAAATG 59.119 41.667 0.00 0.00 0.00 2.32
4968 6376 5.532406 CACATTATCTCCGTCCCAAAATGAT 59.468 40.000 0.00 0.00 0.00 2.45
4969 6377 6.710295 CACATTATCTCCGTCCCAAAATGATA 59.290 38.462 0.00 0.00 0.00 2.15
4970 6378 7.391554 CACATTATCTCCGTCCCAAAATGATAT 59.608 37.037 0.00 0.00 0.00 1.63
4971 6379 7.944554 ACATTATCTCCGTCCCAAAATGATATT 59.055 33.333 0.00 0.00 0.00 1.28
4972 6380 7.979444 TTATCTCCGTCCCAAAATGATATTC 57.021 36.000 0.00 0.00 0.00 1.75
4973 6381 4.714632 TCTCCGTCCCAAAATGATATTCC 58.285 43.478 0.00 0.00 0.00 3.01
4974 6382 3.821033 CTCCGTCCCAAAATGATATTCCC 59.179 47.826 0.00 0.00 0.00 3.97
4975 6383 3.461831 TCCGTCCCAAAATGATATTCCCT 59.538 43.478 0.00 0.00 0.00 4.20
4976 6384 3.821033 CCGTCCCAAAATGATATTCCCTC 59.179 47.826 0.00 0.00 0.00 4.30
4977 6385 3.821033 CGTCCCAAAATGATATTCCCTCC 59.179 47.826 0.00 0.00 0.00 4.30
4978 6386 3.821033 GTCCCAAAATGATATTCCCTCCG 59.179 47.826 0.00 0.00 0.00 4.63
4979 6387 3.461831 TCCCAAAATGATATTCCCTCCGT 59.538 43.478 0.00 0.00 0.00 4.69
4980 6388 3.821033 CCCAAAATGATATTCCCTCCGTC 59.179 47.826 0.00 0.00 0.00 4.79
4981 6389 3.821033 CCAAAATGATATTCCCTCCGTCC 59.179 47.826 0.00 0.00 0.00 4.79
4982 6390 3.790089 AAATGATATTCCCTCCGTCCC 57.210 47.619 0.00 0.00 0.00 4.46
4983 6391 2.415983 ATGATATTCCCTCCGTCCCA 57.584 50.000 0.00 0.00 0.00 4.37
4984 6392 2.415983 TGATATTCCCTCCGTCCCAT 57.584 50.000 0.00 0.00 0.00 4.00
4985 6393 3.553375 TGATATTCCCTCCGTCCCATA 57.447 47.619 0.00 0.00 0.00 2.74
4986 6394 3.864328 TGATATTCCCTCCGTCCCATAA 58.136 45.455 0.00 0.00 0.00 1.90
4987 6395 4.435137 TGATATTCCCTCCGTCCCATAAT 58.565 43.478 0.00 0.00 0.00 1.28
4988 6396 5.595770 TGATATTCCCTCCGTCCCATAATA 58.404 41.667 0.00 0.00 0.00 0.98
4989 6397 6.209774 TGATATTCCCTCCGTCCCATAATAT 58.790 40.000 0.00 0.00 0.00 1.28
4990 6398 7.367027 TGATATTCCCTCCGTCCCATAATATA 58.633 38.462 0.00 0.00 0.00 0.86
4991 6399 7.847335 TGATATTCCCTCCGTCCCATAATATAA 59.153 37.037 0.00 0.00 0.00 0.98
4992 6400 6.561519 ATTCCCTCCGTCCCATAATATAAG 57.438 41.667 0.00 0.00 0.00 1.73
4993 6401 5.279562 TCCCTCCGTCCCATAATATAAGA 57.720 43.478 0.00 0.00 0.00 2.10
4994 6402 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
4995 6403 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
4996 6404 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
4997 6405 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
4998 6406 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
4999 6407 7.309377 CCTCCGTCCCATAATATAAGAACGTTA 60.309 40.741 0.00 0.00 0.00 3.18
5000 6408 7.950512 TCCGTCCCATAATATAAGAACGTTAA 58.049 34.615 0.00 0.00 0.00 2.01
5001 6409 7.867403 TCCGTCCCATAATATAAGAACGTTAAC 59.133 37.037 0.00 0.00 0.00 2.01
5002 6410 7.148918 CCGTCCCATAATATAAGAACGTTAACG 60.149 40.741 25.68 25.68 46.33 3.18
5057 6465 0.814010 AACAGAGAAACAACGCGCCT 60.814 50.000 5.73 0.00 0.00 5.52
5058 6466 1.222115 ACAGAGAAACAACGCGCCTC 61.222 55.000 5.73 0.00 0.00 4.70
5081 6949 8.328864 CCTCTTCTTTAAAATCTTCGAATACGG 58.671 37.037 0.00 0.00 40.21 4.02
5087 6955 8.726870 TTTAAAATCTTCGAATACGGAAGGAT 57.273 30.769 0.00 0.00 40.21 3.24
5243 7839 7.750229 ACTCATTTATCACTTGCTTCTTCAA 57.250 32.000 0.00 0.00 0.00 2.69
5284 7880 3.825014 CCCATCATCCTCCATGAATGTTC 59.175 47.826 0.00 0.00 45.06 3.18
5380 7990 8.538409 AAAAATGTTATGAGAGATTTGTTGCC 57.462 30.769 0.00 0.00 0.00 4.52
5394 8004 1.278985 TGTTGCCAAGAGATCCATCGT 59.721 47.619 0.00 0.00 0.00 3.73
5415 8025 9.552114 CATCGTTTATCTATTTACCTACCTACG 57.448 37.037 0.00 0.00 0.00 3.51
5417 8027 8.993121 TCGTTTATCTATTTACCTACCTACGAG 58.007 37.037 0.00 0.00 0.00 4.18
5418 8028 8.778358 CGTTTATCTATTTACCTACCTACGAGT 58.222 37.037 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.651206 GAAGCTCCGCTAGTTATTACCC 58.349 50.000 0.00 0.00 38.25 3.69
1 2 3.306818 CGAAGCTCCGCTAGTTATTACC 58.693 50.000 0.00 0.00 38.25 2.85
6 7 0.394762 TCCCGAAGCTCCGCTAGTTA 60.395 55.000 0.00 0.00 38.25 2.24
7 8 1.255667 TTCCCGAAGCTCCGCTAGTT 61.256 55.000 0.00 0.00 38.25 2.24
8 9 1.668101 CTTCCCGAAGCTCCGCTAGT 61.668 60.000 0.00 0.00 38.25 2.57
9 10 1.066587 CTTCCCGAAGCTCCGCTAG 59.933 63.158 0.00 0.00 38.25 3.42
10 11 3.207354 CTTCCCGAAGCTCCGCTA 58.793 61.111 0.00 0.00 38.25 4.26
18 19 3.788766 CCGCGTTGCTTCCCGAAG 61.789 66.667 4.92 0.00 41.24 3.79
26 27 2.280797 TTGAGAAGCCGCGTTGCT 60.281 55.556 4.92 4.34 45.43 3.91
27 28 2.174349 CTTGAGAAGCCGCGTTGC 59.826 61.111 4.92 1.35 0.00 4.17
36 37 1.423395 GAGGTGTCACGCTTGAGAAG 58.577 55.000 0.00 0.00 30.10 2.85
37 38 0.318699 CGAGGTGTCACGCTTGAGAA 60.319 55.000 0.00 0.00 30.10 2.87
38 39 1.285950 CGAGGTGTCACGCTTGAGA 59.714 57.895 0.00 0.00 30.10 3.27
39 40 2.375766 GCGAGGTGTCACGCTTGAG 61.376 63.158 0.00 2.53 46.59 3.02
40 41 2.355837 GCGAGGTGTCACGCTTGA 60.356 61.111 0.00 0.00 46.59 3.02
67 68 3.520862 GATGCATGTGGGCGGTGG 61.521 66.667 2.46 0.00 36.28 4.61
68 69 3.879682 CGATGCATGTGGGCGGTG 61.880 66.667 2.46 0.00 36.28 4.94
88 89 3.567579 TTCTCCAAAGCCAGGCCGG 62.568 63.158 8.22 6.83 38.11 6.13
89 90 1.178534 TTTTCTCCAAAGCCAGGCCG 61.179 55.000 8.22 0.00 0.00 6.13
90 91 1.066645 CATTTTCTCCAAAGCCAGGCC 60.067 52.381 8.22 0.00 0.00 5.19
91 92 1.620323 ACATTTTCTCCAAAGCCAGGC 59.380 47.619 1.84 1.84 0.00 4.85
92 93 3.321682 TCAACATTTTCTCCAAAGCCAGG 59.678 43.478 0.00 0.00 0.00 4.45
93 94 4.589216 TCAACATTTTCTCCAAAGCCAG 57.411 40.909 0.00 0.00 0.00 4.85
94 95 5.511202 GGAATCAACATTTTCTCCAAAGCCA 60.511 40.000 0.00 0.00 0.00 4.75
95 96 4.931601 GGAATCAACATTTTCTCCAAAGCC 59.068 41.667 0.00 0.00 0.00 4.35
96 97 5.540911 TGGAATCAACATTTTCTCCAAAGC 58.459 37.500 0.00 0.00 0.00 3.51
97 98 5.636543 GCTGGAATCAACATTTTCTCCAAAG 59.363 40.000 0.00 0.00 0.00 2.77
98 99 5.540911 GCTGGAATCAACATTTTCTCCAAA 58.459 37.500 0.00 0.00 0.00 3.28
99 100 4.321156 CGCTGGAATCAACATTTTCTCCAA 60.321 41.667 0.00 0.00 0.00 3.53
100 101 3.191162 CGCTGGAATCAACATTTTCTCCA 59.809 43.478 0.00 0.00 0.00 3.86
101 102 3.191371 ACGCTGGAATCAACATTTTCTCC 59.809 43.478 0.00 0.00 0.00 3.71
102 103 4.425577 ACGCTGGAATCAACATTTTCTC 57.574 40.909 0.00 0.00 0.00 2.87
103 104 4.321230 GGAACGCTGGAATCAACATTTTCT 60.321 41.667 0.00 0.00 0.00 2.52
104 105 3.920412 GGAACGCTGGAATCAACATTTTC 59.080 43.478 0.00 0.00 0.00 2.29
105 106 3.306019 GGGAACGCTGGAATCAACATTTT 60.306 43.478 0.00 0.00 0.00 1.82
106 107 2.231235 GGGAACGCTGGAATCAACATTT 59.769 45.455 0.00 0.00 0.00 2.32
107 108 1.818674 GGGAACGCTGGAATCAACATT 59.181 47.619 0.00 0.00 0.00 2.71
108 109 1.271871 TGGGAACGCTGGAATCAACAT 60.272 47.619 0.00 0.00 0.00 2.71
109 110 0.109532 TGGGAACGCTGGAATCAACA 59.890 50.000 0.00 0.00 0.00 3.33
110 111 0.804989 CTGGGAACGCTGGAATCAAC 59.195 55.000 0.00 0.00 0.00 3.18
111 112 0.960364 GCTGGGAACGCTGGAATCAA 60.960 55.000 0.00 0.00 0.00 2.57
112 113 1.377202 GCTGGGAACGCTGGAATCA 60.377 57.895 0.00 0.00 0.00 2.57
113 114 2.464459 CGCTGGGAACGCTGGAATC 61.464 63.158 0.00 0.00 0.00 2.52
114 115 2.436646 CGCTGGGAACGCTGGAAT 60.437 61.111 0.00 0.00 0.00 3.01
115 116 3.589654 CTCGCTGGGAACGCTGGAA 62.590 63.158 0.00 0.00 0.00 3.53
116 117 4.069232 CTCGCTGGGAACGCTGGA 62.069 66.667 0.00 0.00 0.00 3.86
117 118 4.069232 TCTCGCTGGGAACGCTGG 62.069 66.667 0.00 0.00 0.00 4.85
118 119 2.811317 GTCTCGCTGGGAACGCTG 60.811 66.667 0.00 0.00 0.00 5.18
119 120 3.288308 CTGTCTCGCTGGGAACGCT 62.288 63.158 0.00 0.00 0.00 5.07
120 121 2.811317 CTGTCTCGCTGGGAACGC 60.811 66.667 0.00 0.00 0.00 4.84
121 122 2.125912 CCTGTCTCGCTGGGAACG 60.126 66.667 0.00 0.00 33.11 3.95
122 123 2.435059 GCCTGTCTCGCTGGGAAC 60.435 66.667 0.00 0.00 36.77 3.62
123 124 4.069232 CGCCTGTCTCGCTGGGAA 62.069 66.667 0.00 0.00 36.77 3.97
130 131 1.588403 CATCTCTGCGCCTGTCTCG 60.588 63.158 4.18 0.00 0.00 4.04
131 132 1.882167 GCATCTCTGCGCCTGTCTC 60.882 63.158 4.18 0.00 38.92 3.36
132 133 2.186384 GCATCTCTGCGCCTGTCT 59.814 61.111 4.18 0.00 38.92 3.41
145 146 4.770287 CATAGCACGAAATTCAGAGCATC 58.230 43.478 0.00 0.00 0.00 3.91
146 147 3.003068 GCATAGCACGAAATTCAGAGCAT 59.997 43.478 0.00 1.22 0.00 3.79
147 148 2.352651 GCATAGCACGAAATTCAGAGCA 59.647 45.455 0.00 0.00 0.00 4.26
148 149 2.352651 TGCATAGCACGAAATTCAGAGC 59.647 45.455 0.00 0.00 31.71 4.09
149 150 3.002042 CCTGCATAGCACGAAATTCAGAG 59.998 47.826 0.00 0.00 33.79 3.35
150 151 2.938451 CCTGCATAGCACGAAATTCAGA 59.062 45.455 0.00 0.00 33.79 3.27
151 152 2.540361 GCCTGCATAGCACGAAATTCAG 60.540 50.000 4.09 0.00 33.79 3.02
152 153 1.401552 GCCTGCATAGCACGAAATTCA 59.598 47.619 4.09 0.00 33.79 2.57
153 154 1.268743 GGCCTGCATAGCACGAAATTC 60.269 52.381 10.66 0.00 33.79 2.17
154 155 0.740737 GGCCTGCATAGCACGAAATT 59.259 50.000 10.66 0.00 33.79 1.82
155 156 1.103398 GGGCCTGCATAGCACGAAAT 61.103 55.000 0.84 0.00 33.79 2.17
156 157 1.748879 GGGCCTGCATAGCACGAAA 60.749 57.895 0.84 0.00 33.79 3.46
157 158 2.124736 GGGCCTGCATAGCACGAA 60.125 61.111 0.84 0.00 33.79 3.85
158 159 2.269520 ATTGGGCCTGCATAGCACGA 62.270 55.000 4.53 7.29 36.00 4.35
159 160 0.534877 TATTGGGCCTGCATAGCACG 60.535 55.000 4.53 0.00 36.00 5.34
160 161 1.242076 CTATTGGGCCTGCATAGCAC 58.758 55.000 4.53 7.61 33.79 4.40
161 162 0.846015 ACTATTGGGCCTGCATAGCA 59.154 50.000 4.53 0.00 36.92 3.49
162 163 2.859165 TACTATTGGGCCTGCATAGC 57.141 50.000 4.53 0.27 0.00 2.97
163 164 3.498397 CGTTTACTATTGGGCCTGCATAG 59.502 47.826 4.53 10.40 0.00 2.23
164 165 3.118186 ACGTTTACTATTGGGCCTGCATA 60.118 43.478 4.53 0.00 0.00 3.14
165 166 2.297701 CGTTTACTATTGGGCCTGCAT 58.702 47.619 4.53 0.00 0.00 3.96
166 167 1.003812 ACGTTTACTATTGGGCCTGCA 59.996 47.619 4.53 0.00 0.00 4.41
167 168 1.746470 ACGTTTACTATTGGGCCTGC 58.254 50.000 4.53 0.00 0.00 4.85
168 169 4.117685 GACTACGTTTACTATTGGGCCTG 58.882 47.826 4.53 0.00 0.00 4.85
169 170 3.770933 TGACTACGTTTACTATTGGGCCT 59.229 43.478 4.53 0.00 0.00 5.19
170 171 4.127566 TGACTACGTTTACTATTGGGCC 57.872 45.455 0.00 0.00 0.00 5.80
171 172 4.330894 GGTTGACTACGTTTACTATTGGGC 59.669 45.833 0.00 0.00 0.00 5.36
172 173 5.481105 TGGTTGACTACGTTTACTATTGGG 58.519 41.667 0.00 0.00 0.00 4.12
173 174 7.424227 TTTGGTTGACTACGTTTACTATTGG 57.576 36.000 0.00 0.00 0.00 3.16
174 175 8.714179 TCATTTGGTTGACTACGTTTACTATTG 58.286 33.333 0.00 0.00 0.00 1.90
175 176 8.836268 TCATTTGGTTGACTACGTTTACTATT 57.164 30.769 0.00 0.00 0.00 1.73
176 177 8.836268 TTCATTTGGTTGACTACGTTTACTAT 57.164 30.769 0.00 0.00 0.00 2.12
177 178 8.836268 ATTCATTTGGTTGACTACGTTTACTA 57.164 30.769 0.00 0.00 0.00 1.82
178 179 7.442969 TGATTCATTTGGTTGACTACGTTTACT 59.557 33.333 0.00 0.00 0.00 2.24
179 180 7.577979 TGATTCATTTGGTTGACTACGTTTAC 58.422 34.615 0.00 0.00 0.00 2.01
180 181 7.731882 TGATTCATTTGGTTGACTACGTTTA 57.268 32.000 0.00 0.00 0.00 2.01
181 182 6.627395 TGATTCATTTGGTTGACTACGTTT 57.373 33.333 0.00 0.00 0.00 3.60
182 183 6.817765 ATGATTCATTTGGTTGACTACGTT 57.182 33.333 0.00 0.00 0.00 3.99
183 184 7.915293 TTATGATTCATTTGGTTGACTACGT 57.085 32.000 4.14 0.00 0.00 3.57
184 185 8.830580 AGATTATGATTCATTTGGTTGACTACG 58.169 33.333 4.14 0.00 0.00 3.51
188 189 9.305925 GGAAAGATTATGATTCATTTGGTTGAC 57.694 33.333 4.14 0.00 0.00 3.18
189 190 9.033711 TGGAAAGATTATGATTCATTTGGTTGA 57.966 29.630 4.14 0.00 0.00 3.18
190 191 9.090692 GTGGAAAGATTATGATTCATTTGGTTG 57.909 33.333 4.14 0.00 0.00 3.77
191 192 8.814931 TGTGGAAAGATTATGATTCATTTGGTT 58.185 29.630 4.14 0.00 0.00 3.67
192 193 8.365060 TGTGGAAAGATTATGATTCATTTGGT 57.635 30.769 4.14 0.00 0.00 3.67
193 194 9.256477 CATGTGGAAAGATTATGATTCATTTGG 57.744 33.333 4.14 0.00 0.00 3.28
194 195 9.256477 CCATGTGGAAAGATTATGATTCATTTG 57.744 33.333 4.14 0.00 37.39 2.32
195 196 9.204337 TCCATGTGGAAAGATTATGATTCATTT 57.796 29.630 4.14 0.00 42.18 2.32
196 197 8.771521 TCCATGTGGAAAGATTATGATTCATT 57.228 30.769 4.14 0.00 42.18 2.57
212 213 1.767036 CCAACCAGGTCCATGTGGA 59.233 57.895 7.06 0.00 43.08 4.02
213 214 1.978617 GCCAACCAGGTCCATGTGG 60.979 63.158 3.08 3.08 40.61 4.17
214 215 0.612732 ATGCCAACCAGGTCCATGTG 60.613 55.000 0.00 0.00 40.61 3.21
215 216 0.612732 CATGCCAACCAGGTCCATGT 60.613 55.000 15.09 0.00 40.61 3.21
216 217 0.612732 ACATGCCAACCAGGTCCATG 60.613 55.000 19.11 19.11 41.20 3.66
217 218 0.998928 TACATGCCAACCAGGTCCAT 59.001 50.000 0.00 0.00 39.51 3.41
218 219 0.998928 ATACATGCCAACCAGGTCCA 59.001 50.000 0.00 0.00 39.51 4.02
219 220 2.024414 GAATACATGCCAACCAGGTCC 58.976 52.381 0.00 0.00 39.51 4.46
220 221 2.684881 CTGAATACATGCCAACCAGGTC 59.315 50.000 0.00 0.00 39.51 3.85
221 222 2.621407 CCTGAATACATGCCAACCAGGT 60.621 50.000 11.40 0.00 41.94 4.00
222 223 2.026641 CCTGAATACATGCCAACCAGG 58.973 52.381 0.00 0.00 41.84 4.45
223 224 1.406539 GCCTGAATACATGCCAACCAG 59.593 52.381 0.00 0.00 32.86 4.00
224 225 1.272369 TGCCTGAATACATGCCAACCA 60.272 47.619 0.00 0.00 36.96 3.67
225 226 1.473258 TGCCTGAATACATGCCAACC 58.527 50.000 0.00 0.00 36.96 3.77
226 227 2.417243 GGTTGCCTGAATACATGCCAAC 60.417 50.000 0.00 0.00 36.96 3.77
227 228 1.824230 GGTTGCCTGAATACATGCCAA 59.176 47.619 0.00 0.00 36.96 4.52
228 229 1.272369 TGGTTGCCTGAATACATGCCA 60.272 47.619 0.00 0.00 36.96 4.92
229 230 1.473258 TGGTTGCCTGAATACATGCC 58.527 50.000 0.00 0.00 36.96 4.40
230 231 3.253230 GTTTGGTTGCCTGAATACATGC 58.747 45.455 0.00 0.00 37.97 4.06
231 232 4.236935 GTGTTTGGTTGCCTGAATACATG 58.763 43.478 0.00 0.00 0.00 3.21
232 233 3.894427 TGTGTTTGGTTGCCTGAATACAT 59.106 39.130 0.00 0.00 0.00 2.29
233 234 3.291584 TGTGTTTGGTTGCCTGAATACA 58.708 40.909 0.00 0.00 0.00 2.29
234 235 4.236935 CATGTGTTTGGTTGCCTGAATAC 58.763 43.478 0.00 0.00 0.00 1.89
235 236 3.894427 ACATGTGTTTGGTTGCCTGAATA 59.106 39.130 0.00 0.00 0.00 1.75
236 237 2.699846 ACATGTGTTTGGTTGCCTGAAT 59.300 40.909 0.00 0.00 0.00 2.57
237 238 2.106566 ACATGTGTTTGGTTGCCTGAA 58.893 42.857 0.00 0.00 0.00 3.02
238 239 1.774110 ACATGTGTTTGGTTGCCTGA 58.226 45.000 0.00 0.00 0.00 3.86
239 240 2.600470 AACATGTGTTTGGTTGCCTG 57.400 45.000 0.00 0.00 33.93 4.85
240 241 2.627699 CCTAACATGTGTTTGGTTGCCT 59.372 45.455 15.30 0.00 43.00 4.75
241 242 3.025287 CCTAACATGTGTTTGGTTGCC 57.975 47.619 15.30 0.00 43.00 4.52
247 248 4.202000 TGCAAGACACCTAACATGTGTTTG 60.202 41.667 0.00 2.19 46.43 2.93
248 249 3.951037 TGCAAGACACCTAACATGTGTTT 59.049 39.130 0.00 0.00 46.43 2.83
249 250 3.550820 TGCAAGACACCTAACATGTGTT 58.449 40.909 0.00 3.64 46.43 3.32
251 252 3.814842 TCTTGCAAGACACCTAACATGTG 59.185 43.478 25.16 0.00 39.63 3.21
252 253 4.085357 TCTTGCAAGACACCTAACATGT 57.915 40.909 25.16 0.00 0.00 3.21
264 265 3.394674 TGGTTACGATGTCTTGCAAGA 57.605 42.857 25.16 25.16 0.00 3.02
265 266 4.154015 TGAATGGTTACGATGTCTTGCAAG 59.846 41.667 20.81 20.81 0.00 4.01
266 267 4.068599 TGAATGGTTACGATGTCTTGCAA 58.931 39.130 0.00 0.00 0.00 4.08
267 268 3.435327 GTGAATGGTTACGATGTCTTGCA 59.565 43.478 0.00 0.00 0.00 4.08
268 269 3.181510 GGTGAATGGTTACGATGTCTTGC 60.182 47.826 0.00 0.00 0.00 4.01
269 270 3.062099 CGGTGAATGGTTACGATGTCTTG 59.938 47.826 0.00 0.00 0.00 3.02
270 271 3.259064 CGGTGAATGGTTACGATGTCTT 58.741 45.455 0.00 0.00 0.00 3.01
271 272 2.888594 CGGTGAATGGTTACGATGTCT 58.111 47.619 0.00 0.00 0.00 3.41
272 273 1.326548 GCGGTGAATGGTTACGATGTC 59.673 52.381 0.00 0.00 0.00 3.06
273 274 1.365699 GCGGTGAATGGTTACGATGT 58.634 50.000 0.00 0.00 0.00 3.06
274 275 0.300491 CGCGGTGAATGGTTACGATG 59.700 55.000 0.00 0.00 0.00 3.84
275 276 0.808453 CCGCGGTGAATGGTTACGAT 60.808 55.000 19.50 0.00 0.00 3.73
276 277 1.446445 CCGCGGTGAATGGTTACGA 60.446 57.895 19.50 0.00 0.00 3.43
277 278 2.457778 CCCGCGGTGAATGGTTACG 61.458 63.158 26.12 0.00 0.00 3.18
278 279 0.674269 TTCCCGCGGTGAATGGTTAC 60.674 55.000 26.12 0.00 0.00 2.50
279 280 0.036448 TTTCCCGCGGTGAATGGTTA 59.964 50.000 26.12 8.78 0.00 2.85
280 281 0.824182 TTTTCCCGCGGTGAATGGTT 60.824 50.000 26.12 0.00 0.00 3.67
281 282 0.824182 TTTTTCCCGCGGTGAATGGT 60.824 50.000 26.12 0.00 0.00 3.55
282 283 1.960612 TTTTTCCCGCGGTGAATGG 59.039 52.632 26.12 7.54 0.00 3.16
298 299 7.593825 ACTTTCTTGTCTGCGCTATAATTTTT 58.406 30.769 9.73 0.00 0.00 1.94
299 300 7.145932 ACTTTCTTGTCTGCGCTATAATTTT 57.854 32.000 9.73 0.00 0.00 1.82
300 301 6.743575 ACTTTCTTGTCTGCGCTATAATTT 57.256 33.333 9.73 0.00 0.00 1.82
301 302 6.595716 AGAACTTTCTTGTCTGCGCTATAATT 59.404 34.615 9.73 0.00 32.55 1.40
302 303 6.109359 AGAACTTTCTTGTCTGCGCTATAAT 58.891 36.000 9.73 0.00 32.55 1.28
303 304 5.479306 AGAACTTTCTTGTCTGCGCTATAA 58.521 37.500 9.73 0.31 32.55 0.98
304 305 5.073311 AGAACTTTCTTGTCTGCGCTATA 57.927 39.130 9.73 0.00 32.55 1.31
305 306 3.931578 AGAACTTTCTTGTCTGCGCTAT 58.068 40.909 9.73 0.00 32.55 2.97
306 307 3.386768 AGAACTTTCTTGTCTGCGCTA 57.613 42.857 9.73 0.00 32.55 4.26
307 308 2.246719 AGAACTTTCTTGTCTGCGCT 57.753 45.000 9.73 0.00 32.55 5.92
331 332 9.248291 GCCGACATATCATTTTGAAATTTATGT 57.752 29.630 15.09 15.09 37.58 2.29
332 333 9.467258 AGCCGACATATCATTTTGAAATTTATG 57.533 29.630 0.00 11.18 32.95 1.90
333 334 9.683069 GAGCCGACATATCATTTTGAAATTTAT 57.317 29.630 0.00 0.00 0.00 1.40
334 335 8.681806 TGAGCCGACATATCATTTTGAAATTTA 58.318 29.630 0.00 0.00 0.00 1.40
335 336 7.546358 TGAGCCGACATATCATTTTGAAATTT 58.454 30.769 0.00 0.00 0.00 1.82
336 337 7.099266 TGAGCCGACATATCATTTTGAAATT 57.901 32.000 0.00 0.00 0.00 1.82
337 338 6.319658 ACTGAGCCGACATATCATTTTGAAAT 59.680 34.615 0.00 0.00 0.00 2.17
338 339 5.647658 ACTGAGCCGACATATCATTTTGAAA 59.352 36.000 0.00 0.00 0.00 2.69
339 340 5.185454 ACTGAGCCGACATATCATTTTGAA 58.815 37.500 0.00 0.00 0.00 2.69
340 341 4.769688 ACTGAGCCGACATATCATTTTGA 58.230 39.130 0.00 0.00 0.00 2.69
341 342 6.791887 ATACTGAGCCGACATATCATTTTG 57.208 37.500 0.00 0.00 0.00 2.44
342 343 7.807977 AAATACTGAGCCGACATATCATTTT 57.192 32.000 0.00 0.00 0.00 1.82
343 344 7.255242 CCAAAATACTGAGCCGACATATCATTT 60.255 37.037 0.00 0.00 0.00 2.32
344 345 6.205464 CCAAAATACTGAGCCGACATATCATT 59.795 38.462 0.00 0.00 0.00 2.57
345 346 5.702670 CCAAAATACTGAGCCGACATATCAT 59.297 40.000 0.00 0.00 0.00 2.45
346 347 5.056480 CCAAAATACTGAGCCGACATATCA 58.944 41.667 0.00 0.00 0.00 2.15
347 348 5.297547 TCCAAAATACTGAGCCGACATATC 58.702 41.667 0.00 0.00 0.00 1.63
348 349 5.290493 TCCAAAATACTGAGCCGACATAT 57.710 39.130 0.00 0.00 0.00 1.78
349 350 4.442893 CCTCCAAAATACTGAGCCGACATA 60.443 45.833 0.00 0.00 0.00 2.29
350 351 3.535561 CTCCAAAATACTGAGCCGACAT 58.464 45.455 0.00 0.00 0.00 3.06
351 352 2.354704 CCTCCAAAATACTGAGCCGACA 60.355 50.000 0.00 0.00 0.00 4.35
352 353 2.280628 CCTCCAAAATACTGAGCCGAC 58.719 52.381 0.00 0.00 0.00 4.79
353 354 1.906574 ACCTCCAAAATACTGAGCCGA 59.093 47.619 0.00 0.00 0.00 5.54
354 355 2.009774 CACCTCCAAAATACTGAGCCG 58.990 52.381 0.00 0.00 0.00 5.52
355 356 1.745653 GCACCTCCAAAATACTGAGCC 59.254 52.381 0.00 0.00 0.00 4.70
356 357 2.680339 GAGCACCTCCAAAATACTGAGC 59.320 50.000 0.00 0.00 0.00 4.26
357 358 3.942829 TGAGCACCTCCAAAATACTGAG 58.057 45.455 0.00 0.00 0.00 3.35
358 359 4.574674 ATGAGCACCTCCAAAATACTGA 57.425 40.909 0.00 0.00 0.00 3.41
359 360 6.757897 TTTATGAGCACCTCCAAAATACTG 57.242 37.500 0.00 0.00 0.00 2.74
360 361 6.948309 ACTTTTATGAGCACCTCCAAAATACT 59.052 34.615 0.00 0.00 29.55 2.12
361 362 7.158099 ACTTTTATGAGCACCTCCAAAATAC 57.842 36.000 0.00 0.00 29.55 1.89
362 363 7.556275 CCTACTTTTATGAGCACCTCCAAAATA 59.444 37.037 0.00 0.00 29.55 1.40
363 364 6.378280 CCTACTTTTATGAGCACCTCCAAAAT 59.622 38.462 0.00 0.00 29.55 1.82
364 365 5.710099 CCTACTTTTATGAGCACCTCCAAAA 59.290 40.000 0.00 0.00 0.00 2.44
365 366 5.013704 TCCTACTTTTATGAGCACCTCCAAA 59.986 40.000 0.00 0.00 0.00 3.28
366 367 4.534500 TCCTACTTTTATGAGCACCTCCAA 59.466 41.667 0.00 0.00 0.00 3.53
367 368 4.101114 TCCTACTTTTATGAGCACCTCCA 58.899 43.478 0.00 0.00 0.00 3.86
368 369 4.755266 TCCTACTTTTATGAGCACCTCC 57.245 45.455 0.00 0.00 0.00 4.30
369 370 5.525378 CACATCCTACTTTTATGAGCACCTC 59.475 44.000 0.00 0.00 0.00 3.85
370 371 5.431765 CACATCCTACTTTTATGAGCACCT 58.568 41.667 0.00 0.00 0.00 4.00
371 372 4.035675 GCACATCCTACTTTTATGAGCACC 59.964 45.833 0.00 0.00 37.23 5.01
372 373 4.260375 CGCACATCCTACTTTTATGAGCAC 60.260 45.833 0.00 0.00 37.14 4.40
373 374 3.871006 CGCACATCCTACTTTTATGAGCA 59.129 43.478 0.00 0.00 37.14 4.26
374 375 3.871594 ACGCACATCCTACTTTTATGAGC 59.128 43.478 0.00 0.00 34.95 4.26
375 376 4.870426 ACACGCACATCCTACTTTTATGAG 59.130 41.667 0.00 0.00 0.00 2.90
376 377 4.629634 CACACGCACATCCTACTTTTATGA 59.370 41.667 0.00 0.00 0.00 2.15
377 378 4.391830 ACACACGCACATCCTACTTTTATG 59.608 41.667 0.00 0.00 0.00 1.90
378 379 4.391830 CACACACGCACATCCTACTTTTAT 59.608 41.667 0.00 0.00 0.00 1.40
379 380 3.743911 CACACACGCACATCCTACTTTTA 59.256 43.478 0.00 0.00 0.00 1.52
380 381 2.548057 CACACACGCACATCCTACTTTT 59.452 45.455 0.00 0.00 0.00 2.27
381 382 2.143122 CACACACGCACATCCTACTTT 58.857 47.619 0.00 0.00 0.00 2.66
382 383 1.795768 CACACACGCACATCCTACTT 58.204 50.000 0.00 0.00 0.00 2.24
383 384 0.670546 GCACACACGCACATCCTACT 60.671 55.000 0.00 0.00 0.00 2.57
384 385 1.787847 GCACACACGCACATCCTAC 59.212 57.895 0.00 0.00 0.00 3.18
385 386 1.736282 CGCACACACGCACATCCTA 60.736 57.895 0.00 0.00 0.00 2.94
386 387 3.043713 CGCACACACGCACATCCT 61.044 61.111 0.00 0.00 0.00 3.24
387 388 2.764251 GAACGCACACACGCACATCC 62.764 60.000 0.00 0.00 36.19 3.51
388 389 1.438710 GAACGCACACACGCACATC 60.439 57.895 0.00 0.00 36.19 3.06
389 390 1.506309 ATGAACGCACACACGCACAT 61.506 50.000 0.00 0.00 36.19 3.21
390 391 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
391 392 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
392 393 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
393 394 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
394 395 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
395 396 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
396 397 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
397 398 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
398 399 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
399 400 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
400 401 1.855295 TACTCACCCCTATGAACGCA 58.145 50.000 0.00 0.00 0.00 5.24
401 402 4.495422 CATATACTCACCCCTATGAACGC 58.505 47.826 0.00 0.00 0.00 4.84
402 403 4.495422 GCATATACTCACCCCTATGAACG 58.505 47.826 0.00 0.00 0.00 3.95
403 404 4.495422 CGCATATACTCACCCCTATGAAC 58.505 47.826 0.00 0.00 0.00 3.18
404 405 3.056107 GCGCATATACTCACCCCTATGAA 60.056 47.826 0.30 0.00 0.00 2.57
405 406 2.496070 GCGCATATACTCACCCCTATGA 59.504 50.000 0.30 0.00 0.00 2.15
406 407 2.735444 CGCGCATATACTCACCCCTATG 60.735 54.545 8.75 0.00 0.00 2.23
407 408 1.476891 CGCGCATATACTCACCCCTAT 59.523 52.381 8.75 0.00 0.00 2.57
408 409 0.885879 CGCGCATATACTCACCCCTA 59.114 55.000 8.75 0.00 0.00 3.53
409 410 1.113517 ACGCGCATATACTCACCCCT 61.114 55.000 5.73 0.00 0.00 4.79
410 411 0.944311 CACGCGCATATACTCACCCC 60.944 60.000 5.73 0.00 0.00 4.95
411 412 0.249322 ACACGCGCATATACTCACCC 60.249 55.000 5.73 0.00 0.00 4.61
412 413 2.410785 TACACGCGCATATACTCACC 57.589 50.000 5.73 0.00 0.00 4.02
413 414 5.329493 TCATATACACGCGCATATACTCAC 58.671 41.667 5.73 0.00 0.00 3.51
414 415 5.554822 TCATATACACGCGCATATACTCA 57.445 39.130 5.73 0.00 0.00 3.41
415 416 4.438145 GCTCATATACACGCGCATATACTC 59.562 45.833 5.73 0.00 0.00 2.59
416 417 4.352039 GCTCATATACACGCGCATATACT 58.648 43.478 5.73 0.00 0.00 2.12
417 418 3.177838 CGCTCATATACACGCGCATATAC 59.822 47.826 5.73 0.29 39.11 1.47
418 419 3.359654 CGCTCATATACACGCGCATATA 58.640 45.455 5.73 9.29 39.11 0.86
419 420 2.185262 CGCTCATATACACGCGCATAT 58.815 47.619 5.73 7.02 39.11 1.78
420 421 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
421 422 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
422 423 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
426 427 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
427 428 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
428 429 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
429 430 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
430 431 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
431 432 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
432 433 3.801114 ATACAGACACAAGCGCTCATA 57.199 42.857 12.06 0.00 0.00 2.15
433 434 2.680312 ATACAGACACAAGCGCTCAT 57.320 45.000 12.06 0.00 0.00 2.90
434 435 2.455674 AATACAGACACAAGCGCTCA 57.544 45.000 12.06 0.00 0.00 4.26
435 436 2.480419 ACAAATACAGACACAAGCGCTC 59.520 45.455 12.06 0.00 0.00 5.03
436 437 2.494059 ACAAATACAGACACAAGCGCT 58.506 42.857 2.64 2.64 0.00 5.92
437 438 2.969443 ACAAATACAGACACAAGCGC 57.031 45.000 0.00 0.00 0.00 5.92
438 439 4.684242 TCAGTACAAATACAGACACAAGCG 59.316 41.667 0.00 0.00 33.30 4.68
439 440 6.147821 ACATCAGTACAAATACAGACACAAGC 59.852 38.462 0.00 0.00 30.42 4.01
440 441 7.658179 ACATCAGTACAAATACAGACACAAG 57.342 36.000 0.00 0.00 30.42 3.16
441 442 9.549078 TTAACATCAGTACAAATACAGACACAA 57.451 29.630 0.00 0.00 30.42 3.33
442 443 9.549078 TTTAACATCAGTACAAATACAGACACA 57.451 29.630 0.00 0.00 30.42 3.72
492 493 1.918609 GAGATTCGACGAAACGGAAGG 59.081 52.381 15.22 0.00 0.00 3.46
503 504 1.131504 ACGCTGACTCAGAGATTCGAC 59.868 52.381 15.89 0.00 34.97 4.20
505 506 2.852901 GCTACGCTGACTCAGAGATTCG 60.853 54.545 15.89 8.74 34.97 3.34
534 535 3.532892 AGTCCACGATTATACGTAGCG 57.467 47.619 0.08 5.01 44.76 4.26
596 597 1.587054 CAGTGGGGTCGACTGTCTC 59.413 63.158 16.46 0.00 36.79 3.36
734 735 1.202940 GGGAATGGGGAGTATCTTGCC 60.203 57.143 0.00 0.00 33.73 4.52
759 760 3.941483 GAGTTGGTGAGAGAGAGAGAGAG 59.059 52.174 0.00 0.00 0.00 3.20
760 761 3.308117 GGAGTTGGTGAGAGAGAGAGAGA 60.308 52.174 0.00 0.00 0.00 3.10
1231 1243 7.816031 GGATGCTAATAAAATACGCTACCAGTA 59.184 37.037 0.00 0.00 0.00 2.74
1299 1311 2.586079 CGCACGCCGATCTCCATT 60.586 61.111 0.00 0.00 40.02 3.16
1449 1461 1.078214 CGGGAAGCAAGCATCTCCA 60.078 57.895 9.21 0.00 0.00 3.86
1479 1491 2.874849 ACATAAAAAGAAATGCGGCCG 58.125 42.857 24.05 24.05 0.00 6.13
1539 1552 7.501225 TCGACTATCTCACATACTGGTTCATAA 59.499 37.037 0.00 0.00 0.00 1.90
1584 1597 9.112725 TCATCATGTATTCATTTGAGGTACTTG 57.887 33.333 0.00 11.04 32.04 3.16
1676 1709 1.888512 ACATGCAACCCTGATGTTGTC 59.111 47.619 0.00 0.13 45.80 3.18
2136 3478 3.865745 CCGGAGTTAATGTGCTTAGTCAG 59.134 47.826 0.00 0.00 0.00 3.51
2206 3549 8.642908 TTGTAATACTGTTCGACTGATAATGG 57.357 34.615 0.00 0.00 0.00 3.16
2287 3639 2.734670 CATCATGTAATGCAAAGGCCG 58.265 47.619 0.00 0.00 46.21 6.13
2301 3653 9.726232 GTAATAATTATGGCTGTATGCATCATG 57.274 33.333 0.19 0.00 45.15 3.07
2509 3862 5.757850 AGAAAGTGATGTCTGAAACCAAC 57.242 39.130 0.00 0.00 0.00 3.77
2555 3908 4.963318 AGAGAAGTTCAATCACCTGTCA 57.037 40.909 5.50 0.00 0.00 3.58
2632 3986 1.675310 CCGTGCTGGCAAGAATCCA 60.675 57.895 9.84 0.00 0.00 3.41
3021 4381 4.620982 TGGTATGCTCGACTGATTACATG 58.379 43.478 0.00 0.00 0.00 3.21
3063 4423 6.434028 TGCCTGCAGTGATTAGAACTTAAATT 59.566 34.615 13.81 0.00 0.00 1.82
3080 4440 2.582728 CTCTCTAAGAGTGCCTGCAG 57.417 55.000 6.78 6.78 37.57 4.41
3432 4793 2.400399 TGCACGCTAACTGACACTAAC 58.600 47.619 0.00 0.00 0.00 2.34
3435 4796 0.673985 TCTGCACGCTAACTGACACT 59.326 50.000 0.00 0.00 0.00 3.55
3747 5108 7.932120 TGAAAACAACGAAAAGAAGAACAAA 57.068 28.000 0.00 0.00 0.00 2.83
3774 5135 3.838120 CTTTTCTCATTTCCTTTCCGCC 58.162 45.455 0.00 0.00 0.00 6.13
3999 5402 9.086336 GACAAGAAATGAAGAAAAACATGTCAA 57.914 29.630 0.00 0.00 34.34 3.18
4082 5487 8.733458 GCATATATAAAGAACCATCATCAAGCA 58.267 33.333 0.00 0.00 0.00 3.91
4103 5508 3.769300 TCTACACCCATATCGCAGCATAT 59.231 43.478 0.00 0.00 0.00 1.78
4803 6209 0.663867 CGCAGCTCCTCATCTGATCG 60.664 60.000 0.00 0.00 32.26 3.69
4823 6229 3.378427 AGCGGAGAAGCCACAAATATTTC 59.622 43.478 0.00 0.00 38.01 2.17
4871 6279 1.412343 GGGGAACACAGTGTGCATTTT 59.588 47.619 23.21 9.81 36.98 1.82
4898 6306 1.743958 CTGAAGAGCAATCCAAGCTGG 59.256 52.381 0.00 0.00 43.58 4.85
4945 6353 5.110814 TCATTTTGGGACGGAGATAATGT 57.889 39.130 0.00 0.00 0.00 2.71
4960 6368 3.821033 GGGACGGAGGGAATATCATTTTG 59.179 47.826 0.00 0.00 0.00 2.44
4961 6369 3.461831 TGGGACGGAGGGAATATCATTTT 59.538 43.478 0.00 0.00 0.00 1.82
4962 6370 3.053077 TGGGACGGAGGGAATATCATTT 58.947 45.455 0.00 0.00 0.00 2.32
4963 6371 2.701551 TGGGACGGAGGGAATATCATT 58.298 47.619 0.00 0.00 0.00 2.57
4964 6372 2.415983 TGGGACGGAGGGAATATCAT 57.584 50.000 0.00 0.00 0.00 2.45
4965 6373 2.415983 ATGGGACGGAGGGAATATCA 57.584 50.000 0.00 0.00 0.00 2.15
4966 6374 6.749036 ATATTATGGGACGGAGGGAATATC 57.251 41.667 0.00 0.00 0.00 1.63
4968 6376 7.424172 TCTTATATTATGGGACGGAGGGAATA 58.576 38.462 0.00 0.00 0.00 1.75
4969 6377 6.269194 TCTTATATTATGGGACGGAGGGAAT 58.731 40.000 0.00 0.00 0.00 3.01
4970 6378 5.657446 TCTTATATTATGGGACGGAGGGAA 58.343 41.667 0.00 0.00 0.00 3.97
4971 6379 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
4972 6380 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
4973 6381 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
4974 6382 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
4975 6383 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
4976 6384 7.148918 CGTTAACGTTCTTATATTATGGGACGG 60.149 40.741 19.75 0.00 34.11 4.79
4977 6385 7.713968 CGTTAACGTTCTTATATTATGGGACG 58.286 38.462 19.75 9.33 34.11 4.79
5009 6417 9.774413 TGACTAGATTGTACTCGTCTCATAATA 57.226 33.333 0.00 0.00 34.90 0.98
5010 6418 8.678593 TGACTAGATTGTACTCGTCTCATAAT 57.321 34.615 0.00 0.00 34.90 1.28
5011 6419 8.502105 TTGACTAGATTGTACTCGTCTCATAA 57.498 34.615 0.00 0.00 34.90 1.90
5012 6420 8.502105 TTTGACTAGATTGTACTCGTCTCATA 57.498 34.615 0.00 0.00 34.90 2.15
5013 6421 7.392494 TTTGACTAGATTGTACTCGTCTCAT 57.608 36.000 0.00 0.00 34.90 2.90
5014 6422 6.812879 TTTGACTAGATTGTACTCGTCTCA 57.187 37.500 0.00 0.00 34.90 3.27
5015 6423 7.594015 TGTTTTTGACTAGATTGTACTCGTCTC 59.406 37.037 0.00 0.00 34.90 3.36
5016 6424 7.431249 TGTTTTTGACTAGATTGTACTCGTCT 58.569 34.615 0.00 0.00 34.90 4.18
5017 6425 7.594015 TCTGTTTTTGACTAGATTGTACTCGTC 59.406 37.037 0.00 0.00 34.58 4.20
5018 6426 7.431249 TCTGTTTTTGACTAGATTGTACTCGT 58.569 34.615 0.00 0.00 0.00 4.18
5019 6427 7.808381 TCTCTGTTTTTGACTAGATTGTACTCG 59.192 37.037 0.00 0.00 0.00 4.18
5020 6428 9.477484 TTCTCTGTTTTTGACTAGATTGTACTC 57.523 33.333 0.00 0.00 0.00 2.59
5021 6429 9.832445 TTTCTCTGTTTTTGACTAGATTGTACT 57.168 29.630 0.00 0.00 0.00 2.73
5022 6430 9.865484 GTTTCTCTGTTTTTGACTAGATTGTAC 57.135 33.333 0.00 0.00 0.00 2.90
5023 6431 9.607988 TGTTTCTCTGTTTTTGACTAGATTGTA 57.392 29.630 0.00 0.00 0.00 2.41
5057 6465 8.991243 TCCGTATTCGAAGATTTTAAAGAAGA 57.009 30.769 3.35 0.00 39.71 2.87
5058 6466 9.690434 CTTCCGTATTCGAAGATTTTAAAGAAG 57.310 33.333 3.35 3.45 39.71 2.85
5243 7839 1.204941 GGTCCTTACAGTCGCTCACAT 59.795 52.381 0.00 0.00 0.00 3.21
5312 7908 7.087639 AGAGATAAGATTAAGATTTCGGCTCG 58.912 38.462 0.00 0.00 0.00 5.03
5472 8082 9.233232 GCCGGTTTGTATTAAAAATATCAGAAG 57.767 33.333 1.90 0.00 0.00 2.85
5473 8083 8.740906 TGCCGGTTTGTATTAAAAATATCAGAA 58.259 29.630 1.90 0.00 0.00 3.02
5474 8084 8.185505 GTGCCGGTTTGTATTAAAAATATCAGA 58.814 33.333 1.90 0.00 0.00 3.27
5477 8087 7.646526 GGAGTGCCGGTTTGTATTAAAAATATC 59.353 37.037 1.90 0.00 0.00 1.63
5487 8101 1.280710 TGATGGAGTGCCGGTTTGTAT 59.719 47.619 1.90 0.00 36.79 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.