Multiple sequence alignment - TraesCS6D01G237600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G237600 chr6D 100.000 3719 0 0 1 3719 336365274 336368992 0.000000e+00 6868.0
1 TraesCS6D01G237600 chr6A 93.129 3464 131 41 17 3435 475998993 476002394 0.000000e+00 4979.0
2 TraesCS6D01G237600 chr6B 93.185 3052 152 25 82 3093 484102057 484099022 0.000000e+00 4433.0
3 TraesCS6D01G237600 chr6B 90.752 638 45 8 3083 3719 484090840 484090216 0.000000e+00 839.0
4 TraesCS6D01G237600 chr2A 83.906 1454 232 2 1122 2574 653000214 653001666 0.000000e+00 1387.0
5 TraesCS6D01G237600 chr2D 83.758 1453 236 0 1122 2574 509229376 509230828 0.000000e+00 1376.0
6 TraesCS6D01G237600 chr2B 83.482 1453 240 0 1122 2574 598560814 598562266 0.000000e+00 1354.0
7 TraesCS6D01G237600 chr1A 74.924 1308 260 56 1272 2539 339915534 339914255 1.520000e-148 536.0
8 TraesCS6D01G237600 chr1D 74.090 1374 290 54 1242 2576 260588577 260589923 4.290000e-139 505.0
9 TraesCS6D01G237600 chr5A 74.510 510 104 23 1287 1783 523815683 523816179 8.150000e-47 198.0
10 TraesCS6D01G237600 chr5D 74.364 511 103 24 1287 1783 412076982 412077478 3.790000e-45 193.0
11 TraesCS6D01G237600 chr5D 86.667 60 8 0 1922 1981 542590549 542590608 2.400000e-07 67.6
12 TraesCS6D01G237600 chr5B 73.973 511 105 24 1287 1783 495019895 495020391 8.200000e-42 182.0
13 TraesCS6D01G237600 chr5B 83.529 85 13 1 271 354 703290926 703290842 1.110000e-10 78.7
14 TraesCS6D01G237600 chr7B 75.980 204 45 4 1265 1466 233027579 233027378 6.570000e-18 102.0
15 TraesCS6D01G237600 chr7B 79.130 115 20 4 259 373 709746001 709745891 3.980000e-10 76.8
16 TraesCS6D01G237600 chr3D 84.091 88 12 2 238 324 573807484 573807398 2.380000e-12 84.2
17 TraesCS6D01G237600 chr4A 85.714 63 9 0 1922 1984 626442605 626442543 2.400000e-07 67.6
18 TraesCS6D01G237600 chr3B 83.607 61 8 2 296 355 128938454 128938513 5.190000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G237600 chr6D 336365274 336368992 3718 False 6868 6868 100.000 1 3719 1 chr6D.!!$F1 3718
1 TraesCS6D01G237600 chr6A 475998993 476002394 3401 False 4979 4979 93.129 17 3435 1 chr6A.!!$F1 3418
2 TraesCS6D01G237600 chr6B 484099022 484102057 3035 True 4433 4433 93.185 82 3093 1 chr6B.!!$R2 3011
3 TraesCS6D01G237600 chr6B 484090216 484090840 624 True 839 839 90.752 3083 3719 1 chr6B.!!$R1 636
4 TraesCS6D01G237600 chr2A 653000214 653001666 1452 False 1387 1387 83.906 1122 2574 1 chr2A.!!$F1 1452
5 TraesCS6D01G237600 chr2D 509229376 509230828 1452 False 1376 1376 83.758 1122 2574 1 chr2D.!!$F1 1452
6 TraesCS6D01G237600 chr2B 598560814 598562266 1452 False 1354 1354 83.482 1122 2574 1 chr2B.!!$F1 1452
7 TraesCS6D01G237600 chr1A 339914255 339915534 1279 True 536 536 74.924 1272 2539 1 chr1A.!!$R1 1267
8 TraesCS6D01G237600 chr1D 260588577 260589923 1346 False 505 505 74.090 1242 2576 1 chr1D.!!$F1 1334

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
272 279 0.613777 GTTCCGTGAGAGGGGATGTT 59.386 55.0 0.0 0.0 31.11 2.71 F
537 552 0.729140 CGTGCGGAATGGCTGAAAAC 60.729 55.0 0.0 0.0 0.00 2.43 F
767 790 0.830648 CACCTTCCTTCCATCGGCTA 59.169 55.0 0.0 0.0 0.00 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1125 1150 1.793134 GCAGCTTGCAAGTGAGCACT 61.793 55.0 26.55 11.8 45.61 4.40 R
2428 2465 0.968901 TGGTACCAGAACGCGAGGAT 60.969 55.0 15.93 0.0 0.00 3.24 R
2761 2798 0.323816 ACTCTGTCAGCCTCCGATGA 60.324 55.0 0.00 0.0 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.884179 CTACCCGGCTACCCTCCCAA 62.884 65.000 0.00 0.00 0.00 4.12
32 33 1.749033 CGGCTACCCTCCCAATCTC 59.251 63.158 0.00 0.00 0.00 2.75
69 72 9.406113 AGATCAAAGTACTACTAATTCCTACGT 57.594 33.333 0.00 0.00 0.00 3.57
70 73 9.448294 GATCAAAGTACTACTAATTCCTACGTG 57.552 37.037 0.00 0.00 0.00 4.49
71 74 7.253422 TCAAAGTACTACTAATTCCTACGTGC 58.747 38.462 0.00 0.00 0.00 5.34
72 75 7.121759 TCAAAGTACTACTAATTCCTACGTGCT 59.878 37.037 0.00 0.00 0.00 4.40
73 76 6.616774 AGTACTACTAATTCCTACGTGCTC 57.383 41.667 0.00 0.00 0.00 4.26
74 77 4.915158 ACTACTAATTCCTACGTGCTCC 57.085 45.455 0.00 0.00 0.00 4.70
75 78 4.275810 ACTACTAATTCCTACGTGCTCCA 58.724 43.478 0.00 0.00 0.00 3.86
76 79 3.802948 ACTAATTCCTACGTGCTCCAG 57.197 47.619 0.00 0.00 0.00 3.86
77 80 3.097614 ACTAATTCCTACGTGCTCCAGT 58.902 45.455 0.00 0.00 0.00 4.00
78 81 4.275810 ACTAATTCCTACGTGCTCCAGTA 58.724 43.478 0.00 0.00 0.00 2.74
79 82 4.894114 ACTAATTCCTACGTGCTCCAGTAT 59.106 41.667 0.00 0.00 0.00 2.12
80 83 4.755266 AATTCCTACGTGCTCCAGTATT 57.245 40.909 0.00 0.00 0.00 1.89
151 158 1.068472 CGTGCGAAGTGAGTCTAGGTT 60.068 52.381 0.00 0.00 0.00 3.50
172 179 8.451908 AGGTTAGATGGTTATGTTCTTTATGC 57.548 34.615 0.00 0.00 0.00 3.14
178 185 7.781693 AGATGGTTATGTTCTTTATGCTGGAAT 59.218 33.333 0.00 0.00 0.00 3.01
181 188 7.067372 TGGTTATGTTCTTTATGCTGGAATCAG 59.933 37.037 0.00 0.00 43.64 2.90
182 189 7.067494 GGTTATGTTCTTTATGCTGGAATCAGT 59.933 37.037 0.00 0.00 42.78 3.41
197 204 2.943036 TCAGTCCACCAGGGTTTAAC 57.057 50.000 0.00 0.00 38.11 2.01
229 236 5.637006 TGGTGTTGGTGCTTGTATATTTC 57.363 39.130 0.00 0.00 0.00 2.17
245 252 8.398878 TGTATATTTCTTTCAGTTTTTCCGGT 57.601 30.769 0.00 0.00 0.00 5.28
249 256 5.432885 TTCTTTCAGTTTTTCCGGTGATC 57.567 39.130 0.00 0.00 0.00 2.92
252 259 5.238650 TCTTTCAGTTTTTCCGGTGATCTTC 59.761 40.000 0.00 0.00 0.00 2.87
272 279 0.613777 GTTCCGTGAGAGGGGATGTT 59.386 55.000 0.00 0.00 31.11 2.71
366 373 4.202315 TGTGCTCATAGGTGTTAAGTGTGT 60.202 41.667 0.00 0.00 0.00 3.72
422 430 3.557185 TCGTATGTATGAGCGTCTACGTT 59.443 43.478 0.00 0.00 42.22 3.99
426 434 3.495193 TGTATGAGCGTCTACGTTTGTC 58.505 45.455 0.00 0.00 42.22 3.18
438 446 7.269425 CGTCTACGTTTGTCTTGTACTAAAAC 58.731 38.462 0.00 0.00 34.11 2.43
452 460 2.685897 ACTAAAACAAGCAGTTCGGCAA 59.314 40.909 0.00 0.00 40.26 4.52
537 552 0.729140 CGTGCGGAATGGCTGAAAAC 60.729 55.000 0.00 0.00 0.00 2.43
557 572 0.848053 AAAGACGGTGAGGGGGAAAA 59.152 50.000 0.00 0.00 0.00 2.29
591 606 2.869801 TCTAACCTGCTGTTGTTGAACG 59.130 45.455 2.92 0.00 37.83 3.95
767 790 0.830648 CACCTTCCTTCCATCGGCTA 59.169 55.000 0.00 0.00 0.00 3.93
963 986 4.465446 TCCCTCCTGAGCTCGGGG 62.465 72.222 36.01 27.60 42.72 5.73
987 1012 2.279385 CGCAGCTAGCTCCTCTGC 60.279 66.667 16.15 14.97 46.98 4.26
1042 1067 1.503542 GTCACCGTGTCGTACCGAT 59.496 57.895 0.00 0.00 38.42 4.18
1142 1167 1.170919 CCAGTGCTCACTTGCAAGCT 61.171 55.000 26.27 11.08 45.12 3.74
1993 2030 3.570125 GTGGTACGAGATCATGATCCTCA 59.430 47.826 28.23 15.86 38.58 3.86
2259 2296 4.404098 ATGTTCACGGCGGACCCC 62.404 66.667 13.24 0.00 0.00 4.95
2532 2569 3.770040 CTGGTCATCGGGCGGACA 61.770 66.667 0.00 0.00 35.74 4.02
2583 2620 4.007644 CTCACCGGAGCAGGCACA 62.008 66.667 9.46 0.00 33.67 4.57
2725 2762 0.933973 CGATCAGCGCTGACAGCTAG 60.934 60.000 40.34 21.65 44.06 3.42
2954 3015 1.816835 CAGCATCAAAGTGAGCATGGT 59.183 47.619 0.00 0.00 0.00 3.55
2970 3033 3.509575 GCATGGTTGGGTAGAATTTGTGA 59.490 43.478 0.00 0.00 0.00 3.58
2980 3043 5.278957 GGGTAGAATTTGTGATTGCAGTTGT 60.279 40.000 0.00 0.00 0.00 3.32
3067 3130 3.534554 TGCATAGTGTATGACCAGCAAG 58.465 45.455 0.00 0.00 38.45 4.01
3160 3223 3.958860 AGCAGGCGCCCATATCCC 61.959 66.667 26.15 3.50 39.83 3.85
3203 3270 6.035975 GTGTGGTTTTGAATGAAAGAAACAGG 59.964 38.462 0.00 0.00 34.54 4.00
3224 3291 2.157738 ACAGCACCATGAAGAAGCTTC 58.842 47.619 19.11 19.11 32.35 3.86
3239 3306 1.452145 GCTTCCAGTTCACCCGCAAA 61.452 55.000 0.00 0.00 0.00 3.68
3240 3307 1.028905 CTTCCAGTTCACCCGCAAAA 58.971 50.000 0.00 0.00 0.00 2.44
3241 3308 1.001378 CTTCCAGTTCACCCGCAAAAG 60.001 52.381 0.00 0.00 0.00 2.27
3242 3309 0.181587 TCCAGTTCACCCGCAAAAGA 59.818 50.000 0.00 0.00 0.00 2.52
3407 3474 4.701956 ACCAAAGCCGATACAATGAAAG 57.298 40.909 0.00 0.00 0.00 2.62
3462 3531 1.137086 ACGAGCCCATGACTATGTCAC 59.863 52.381 2.31 0.00 45.65 3.67
3474 3543 0.908910 TATGTCACCCAAGCGACCAT 59.091 50.000 0.00 0.00 0.00 3.55
3498 3567 0.319083 GACACCATACCACACGACCA 59.681 55.000 0.00 0.00 0.00 4.02
3517 3586 4.530857 GAGCCATGACGACCCCGG 62.531 72.222 0.00 0.00 40.78 5.73
3532 3601 1.558294 CCCCGGCTTAGAAACCTAAGT 59.442 52.381 12.18 0.00 43.06 2.24
3535 3604 4.186926 CCCGGCTTAGAAACCTAAGTAAC 58.813 47.826 12.18 4.71 43.06 2.50
3538 3607 3.305361 GGCTTAGAAACCTAAGTAACGCG 59.695 47.826 3.53 3.53 43.06 6.01
3555 3624 2.897350 GCATTCTTCGCCCCGAGG 60.897 66.667 0.00 0.00 37.14 4.63
3557 3626 1.521681 CATTCTTCGCCCCGAGGTC 60.522 63.158 0.00 0.00 37.14 3.85
3558 3627 1.686110 ATTCTTCGCCCCGAGGTCT 60.686 57.895 0.00 0.00 37.14 3.85
3576 3645 3.899981 TTGCTCCGCACAAGCCGAT 62.900 57.895 0.10 0.00 38.71 4.18
3584 3653 1.281899 GCACAAGCCGATGACTCTAC 58.718 55.000 0.00 0.00 33.58 2.59
3596 3665 1.472878 TGACTCTACCGCTCATGTGAC 59.527 52.381 0.00 0.00 0.00 3.67
3626 3695 2.416701 GCTCTCTAGAACACTGAGGTGC 60.417 54.545 7.76 0.00 46.57 5.01
3634 3703 1.131638 ACACTGAGGTGCTCTCCAAA 58.868 50.000 5.44 0.00 46.57 3.28
3652 3721 4.944249 GCCGTTGCTTTGACTTCC 57.056 55.556 0.00 0.00 33.53 3.46
3654 3723 1.172812 GCCGTTGCTTTGACTTCCCT 61.173 55.000 0.00 0.00 33.53 4.20
3656 3725 0.040067 CGTTGCTTTGACTTCCCTGC 60.040 55.000 0.00 0.00 0.00 4.85
3657 3726 1.322442 GTTGCTTTGACTTCCCTGCT 58.678 50.000 0.00 0.00 0.00 4.24
3681 3750 4.687215 GAGGCAGCGCTCCACACA 62.687 66.667 22.44 0.00 0.00 3.72
3711 3780 3.114616 CGCAACCCTGTGCTCGAG 61.115 66.667 8.45 8.45 42.62 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.152368 GAGGGTAGCCGGGTAGCTA 59.848 63.158 34.14 14.07 42.70 3.32
8 9 3.232483 GGAGGGTAGCCGGGTAGC 61.232 72.222 29.93 29.93 0.00 3.58
9 10 2.523657 GGGAGGGTAGCCGGGTAG 60.524 72.222 15.00 0.00 0.00 3.18
10 11 2.260316 ATTGGGAGGGTAGCCGGGTA 62.260 60.000 9.87 9.87 0.00 3.69
11 12 3.653122 ATTGGGAGGGTAGCCGGGT 62.653 63.158 12.58 12.58 0.00 5.28
12 13 2.772622 ATTGGGAGGGTAGCCGGG 60.773 66.667 2.18 0.00 0.00 5.73
13 14 1.759459 GAGATTGGGAGGGTAGCCGG 61.759 65.000 5.06 0.00 0.00 6.13
14 15 1.749033 GAGATTGGGAGGGTAGCCG 59.251 63.158 5.06 0.00 0.00 5.52
15 16 0.400670 AGGAGATTGGGAGGGTAGCC 60.401 60.000 1.60 1.60 0.00 3.93
69 72 5.904984 ATATTACCACCAATACTGGAGCA 57.095 39.130 0.00 0.00 46.92 4.26
70 73 7.241042 TCTATATTACCACCAATACTGGAGC 57.759 40.000 0.00 0.00 46.92 4.70
71 74 7.819900 GCTTCTATATTACCACCAATACTGGAG 59.180 40.741 0.00 0.00 46.92 3.86
72 75 7.291416 TGCTTCTATATTACCACCAATACTGGA 59.709 37.037 0.00 0.00 46.92 3.86
74 77 8.150945 ACTGCTTCTATATTACCACCAATACTG 58.849 37.037 0.00 0.00 0.00 2.74
75 78 8.263854 ACTGCTTCTATATTACCACCAATACT 57.736 34.615 0.00 0.00 0.00 2.12
76 79 9.420551 GTACTGCTTCTATATTACCACCAATAC 57.579 37.037 0.00 0.00 0.00 1.89
77 80 9.150028 TGTACTGCTTCTATATTACCACCAATA 57.850 33.333 0.00 0.00 0.00 1.90
78 81 8.029782 TGTACTGCTTCTATATTACCACCAAT 57.970 34.615 0.00 0.00 0.00 3.16
79 82 7.426606 TGTACTGCTTCTATATTACCACCAA 57.573 36.000 0.00 0.00 0.00 3.67
80 83 7.125204 AGTTGTACTGCTTCTATATTACCACCA 59.875 37.037 0.00 0.00 0.00 4.17
151 158 7.801104 TCCAGCATAAAGAACATAACCATCTA 58.199 34.615 0.00 0.00 0.00 1.98
178 185 2.370849 GAGTTAAACCCTGGTGGACTGA 59.629 50.000 4.76 0.00 38.00 3.41
181 188 3.503800 AAGAGTTAAACCCTGGTGGAC 57.496 47.619 0.00 0.00 38.00 4.02
182 189 4.285260 GTCTAAGAGTTAAACCCTGGTGGA 59.715 45.833 0.00 0.00 38.00 4.02
186 193 5.221864 ACCAAGTCTAAGAGTTAAACCCTGG 60.222 44.000 0.00 0.00 0.00 4.45
189 196 5.618236 ACACCAAGTCTAAGAGTTAAACCC 58.382 41.667 0.00 0.00 0.00 4.11
190 197 6.017357 CCAACACCAAGTCTAAGAGTTAAACC 60.017 42.308 0.00 0.00 0.00 3.27
197 204 2.808543 GCACCAACACCAAGTCTAAGAG 59.191 50.000 0.00 0.00 0.00 2.85
229 236 5.438761 AAGATCACCGGAAAAACTGAAAG 57.561 39.130 9.46 0.00 42.29 2.62
313 320 7.901029 AGAGAGTGAGAAGACACATCATTTTA 58.099 34.615 0.00 0.00 42.45 1.52
398 406 3.423253 CGTAGACGCTCATACATACGAGG 60.423 52.174 0.00 0.00 38.54 4.63
438 446 1.001487 TGATGTTTGCCGAACTGCTTG 60.001 47.619 0.00 0.00 39.08 4.01
511 526 1.226379 CCATTCCGCACGATGCAAC 60.226 57.895 9.95 0.00 45.36 4.17
537 552 0.109723 TTTCCCCCTCACCGTCTTTG 59.890 55.000 0.00 0.00 0.00 2.77
557 572 0.400670 GGTTAGATCCAGGAGCCCCT 60.401 60.000 0.00 0.00 45.74 4.79
591 606 2.897350 GCTACGGGACATGCCAGC 60.897 66.667 8.20 5.26 38.95 4.85
731 754 0.444260 GTGAGCGAGCTAGGCAAAAC 59.556 55.000 11.41 3.39 0.00 2.43
767 790 2.888911 GCGAGGGAGGGCTTATATAGGT 60.889 54.545 0.00 0.00 0.00 3.08
913 936 1.451387 GATCCGCCCGGTTGATTGT 60.451 57.895 6.61 0.00 36.47 2.71
987 1012 2.892425 GACATGGCCTCCGCGAAG 60.892 66.667 8.23 0.00 35.02 3.79
1042 1067 2.203195 GCCCGCATGCTCACCATA 60.203 61.111 17.13 0.00 31.47 2.74
1125 1150 1.793134 GCAGCTTGCAAGTGAGCACT 61.793 55.000 26.55 11.80 45.61 4.40
1876 1901 2.170985 CGAGAACACAAAGCCGCG 59.829 61.111 0.00 0.00 0.00 6.46
1947 1984 2.982744 CTCGAGGCAGACGCTGACA 61.983 63.158 13.93 0.00 42.99 3.58
2428 2465 0.968901 TGGTACCAGAACGCGAGGAT 60.969 55.000 15.93 0.00 0.00 3.24
2532 2569 4.496336 GCCTCCGCAGCCCAATCT 62.496 66.667 0.00 0.00 34.03 2.40
2581 2618 1.070786 CCACTGCCACCGTTACTGT 59.929 57.895 0.00 0.00 0.00 3.55
2583 2620 1.370064 GTCCACTGCCACCGTTACT 59.630 57.895 0.00 0.00 0.00 2.24
2725 2762 2.804527 GTCCGAAATCGTAAATAGGCCC 59.195 50.000 0.00 0.00 37.74 5.80
2761 2798 0.323816 ACTCTGTCAGCCTCCGATGA 60.324 55.000 0.00 0.00 0.00 2.92
2823 2884 9.467796 ACACCGATATATCAGATCAGAAGATTA 57.532 33.333 13.11 0.00 33.72 1.75
2825 2886 7.953005 ACACCGATATATCAGATCAGAAGAT 57.047 36.000 13.11 0.00 37.13 2.40
2826 2887 8.103935 ACTACACCGATATATCAGATCAGAAGA 58.896 37.037 13.11 0.00 0.00 2.87
2827 2888 8.275015 ACTACACCGATATATCAGATCAGAAG 57.725 38.462 13.11 2.63 0.00 2.85
2828 2889 9.907229 ATACTACACCGATATATCAGATCAGAA 57.093 33.333 13.11 0.00 0.00 3.02
2829 2890 9.907229 AATACTACACCGATATATCAGATCAGA 57.093 33.333 13.11 0.00 0.00 3.27
2954 3015 4.832266 ACTGCAATCACAAATTCTACCCAA 59.168 37.500 0.00 0.00 0.00 4.12
2970 3033 0.611896 GGGGTGGCTACAACTGCAAT 60.612 55.000 1.52 0.00 33.77 3.56
2980 3043 3.565307 GATTCAAATCATGGGGTGGCTA 58.435 45.455 0.00 0.00 35.49 3.93
3067 3130 8.547967 TTGTCTCATTTGAACTTATGGAGTAC 57.452 34.615 0.00 0.00 37.72 2.73
3160 3223 4.154195 CCACACTTTTGAACGATAAGAGGG 59.846 45.833 0.00 0.00 0.00 4.30
3193 3260 2.435372 TGGTGCTGTCCTGTTTCTTT 57.565 45.000 0.00 0.00 0.00 2.52
3203 3270 1.818642 AGCTTCTTCATGGTGCTGTC 58.181 50.000 0.00 0.00 32.32 3.51
3224 3291 1.028905 TTCTTTTGCGGGTGAACTGG 58.971 50.000 0.00 0.00 0.00 4.00
3250 3317 6.479990 GCTTGAAAGTTTTATTTCCAACTGCT 59.520 34.615 0.00 0.00 38.21 4.24
3252 3319 8.424274 AAGCTTGAAAGTTTTATTTCCAACTG 57.576 30.769 0.00 0.00 38.21 3.16
3259 3326 7.066163 AGCAGCAAAAGCTTGAAAGTTTTATTT 59.934 29.630 0.00 0.00 39.87 1.40
3262 3329 5.418676 AGCAGCAAAAGCTTGAAAGTTTTA 58.581 33.333 0.00 0.00 39.87 1.52
3366 3433 7.663043 TTGGTTTGTTTCCTTATAAACTGGT 57.337 32.000 0.00 0.00 39.57 4.00
3435 3504 1.074775 TCATGGGCTCGTTTTGGCT 59.925 52.632 0.00 0.00 0.00 4.75
3462 3531 2.097466 GTGTCAATTATGGTCGCTTGGG 59.903 50.000 0.00 0.00 0.00 4.12
3474 3543 4.247258 GTCGTGTGGTATGGTGTCAATTA 58.753 43.478 0.00 0.00 0.00 1.40
3498 3567 3.083997 GGGGTCGTCATGGCTCCT 61.084 66.667 0.00 0.00 0.00 3.69
3538 3607 2.897350 CCTCGGGGCGAAGAATGC 60.897 66.667 0.00 0.00 34.74 3.56
3576 3645 1.472878 GTCACATGAGCGGTAGAGTCA 59.527 52.381 0.00 0.00 0.00 3.41
3596 3665 1.611491 GTTCTAGAGAGCCTGATCCGG 59.389 57.143 0.00 0.00 0.00 5.14
3674 3743 2.616960 GCTATCGTTGACATGTGTGGA 58.383 47.619 1.15 0.00 0.00 4.02
3681 3750 1.006832 GGTTGCGCTATCGTTGACAT 58.993 50.000 9.73 0.00 38.14 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.