Multiple sequence alignment - TraesCS6D01G237300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G237300 chr6D 100.000 6618 0 0 1 6618 335979309 335985926 0.000000e+00 12222.0
1 TraesCS6D01G237300 chr6D 96.774 2201 66 5 2006 4203 304929525 304927327 0.000000e+00 3666.0
2 TraesCS6D01G237300 chr3D 97.406 2197 53 4 2006 4201 582841562 582839369 0.000000e+00 3738.0
3 TraesCS6D01G237300 chr3D 97.316 2198 55 4 2006 4201 577290283 577292478 0.000000e+00 3729.0
4 TraesCS6D01G237300 chr4D 96.882 2213 62 5 1988 4199 439163200 439165406 0.000000e+00 3698.0
5 TraesCS6D01G237300 chr4D 96.445 2222 73 5 1984 4204 26513031 26515247 0.000000e+00 3661.0
6 TraesCS6D01G237300 chr4D 89.394 66 3 4 424 485 262649744 262649809 5.500000e-11 80.5
7 TraesCS6D01G237300 chr4D 92.308 52 1 3 1 51 65171715 65171764 3.310000e-08 71.3
8 TraesCS6D01G237300 chr2D 97.000 2200 61 5 2006 4201 466728902 466726704 0.000000e+00 3692.0
9 TraesCS6D01G237300 chr2D 91.304 46 1 3 1972 2017 579753005 579752963 7.170000e-05 60.2
10 TraesCS6D01G237300 chr2D 90.909 44 1 3 1974 2017 312017767 312017807 1.000000e-03 56.5
11 TraesCS6D01G237300 chr7D 96.817 2199 65 4 2006 4203 153132314 153134508 0.000000e+00 3668.0
12 TraesCS6D01G237300 chr7D 94.118 51 1 2 1 50 465168302 465168253 7.120000e-10 76.8
13 TraesCS6D01G237300 chr1D 96.534 2164 69 5 2006 4168 12015013 12017171 0.000000e+00 3576.0
14 TraesCS6D01G237300 chr2B 95.820 2201 85 4 2006 4199 8694089 8691889 0.000000e+00 3548.0
15 TraesCS6D01G237300 chr6B 96.604 1973 46 11 4199 6168 484988915 484986961 0.000000e+00 3253.0
16 TraesCS6D01G237300 chr6B 94.401 1518 49 17 489 1992 484990404 484988909 0.000000e+00 2300.0
17 TraesCS6D01G237300 chr6B 93.272 327 14 6 58 382 484990732 484990412 6.010000e-130 475.0
18 TraesCS6D01G237300 chr6B 89.552 67 2 5 427 488 142083211 142083145 5.500000e-11 80.5
19 TraesCS6D01G237300 chr6B 88.525 61 6 1 1 60 505778598 505778538 9.210000e-09 73.1
20 TraesCS6D01G237300 chr6A 94.434 1545 50 17 481 1992 475259901 475261442 0.000000e+00 2344.0
21 TraesCS6D01G237300 chr6A 97.992 996 20 0 5158 6153 475262383 475263378 0.000000e+00 1729.0
22 TraesCS6D01G237300 chr6A 89.111 900 59 11 4201 5071 475261438 475262327 0.000000e+00 1083.0
23 TraesCS6D01G237300 chr6A 95.378 238 7 3 6382 6618 475263471 475263705 6.270000e-100 375.0
24 TraesCS6D01G237300 chr6A 81.000 300 30 19 110 382 475259602 475259901 5.200000e-51 213.0
25 TraesCS6D01G237300 chr6A 96.154 130 4 1 2021 2149 16577505 16577634 1.870000e-50 211.0
26 TraesCS6D01G237300 chr6A 89.189 111 4 2 6113 6223 475263374 475263476 1.500000e-26 132.0
27 TraesCS6D01G237300 chr4B 96.825 63 0 2 1 62 289037704 289037643 3.260000e-18 104.0
28 TraesCS6D01G237300 chr4B 98.148 54 1 0 1 54 579402416 579402469 1.960000e-15 95.3
29 TraesCS6D01G237300 chr4B 89.394 66 4 3 427 492 59204330 59204268 5.500000e-11 80.5
30 TraesCS6D01G237300 chr4B 87.324 71 4 5 427 493 117191160 117191091 7.120000e-10 76.8
31 TraesCS6D01G237300 chr3B 100.000 54 0 0 1 54 5643798 5643851 4.220000e-17 100.0
32 TraesCS6D01G237300 chr3B 100.000 35 0 0 1983 2017 790369105 790369071 1.540000e-06 65.8
33 TraesCS6D01G237300 chr7A 98.148 54 1 0 1 54 16295999 16295946 1.960000e-15 95.3
34 TraesCS6D01G237300 chr5A 96.429 56 2 0 1 56 590655636 590655691 7.070000e-15 93.5
35 TraesCS6D01G237300 chr1B 92.063 63 1 4 427 485 60164763 60164701 1.180000e-12 86.1
36 TraesCS6D01G237300 chr1B 87.671 73 3 6 424 492 297093964 297094034 5.500000e-11 80.5
37 TraesCS6D01G237300 chr5B 89.706 68 3 4 424 487 687805627 687805694 4.250000e-12 84.2
38 TraesCS6D01G237300 chr5D 88.406 69 4 4 427 491 502881690 502881622 5.500000e-11 80.5
39 TraesCS6D01G237300 chr5D 85.938 64 7 2 8 69 39038334 39038271 4.280000e-07 67.6
40 TraesCS6D01G237300 chr3A 85.000 80 5 7 424 498 16857784 16857861 2.560000e-09 75.0
41 TraesCS6D01G237300 chr3A 97.222 36 1 0 1982 2017 146601474 146601439 1.990000e-05 62.1
42 TraesCS6D01G237300 chr1A 95.000 40 2 0 1977 2016 91496188 91496149 5.540000e-06 63.9
43 TraesCS6D01G237300 chr2A 88.235 51 1 4 1967 2014 752289764 752289812 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G237300 chr6D 335979309 335985926 6617 False 12222.000000 12222 100.000 1 6618 1 chr6D.!!$F1 6617
1 TraesCS6D01G237300 chr6D 304927327 304929525 2198 True 3666.000000 3666 96.774 2006 4203 1 chr6D.!!$R1 2197
2 TraesCS6D01G237300 chr3D 582839369 582841562 2193 True 3738.000000 3738 97.406 2006 4201 1 chr3D.!!$R1 2195
3 TraesCS6D01G237300 chr3D 577290283 577292478 2195 False 3729.000000 3729 97.316 2006 4201 1 chr3D.!!$F1 2195
4 TraesCS6D01G237300 chr4D 439163200 439165406 2206 False 3698.000000 3698 96.882 1988 4199 1 chr4D.!!$F4 2211
5 TraesCS6D01G237300 chr4D 26513031 26515247 2216 False 3661.000000 3661 96.445 1984 4204 1 chr4D.!!$F1 2220
6 TraesCS6D01G237300 chr2D 466726704 466728902 2198 True 3692.000000 3692 97.000 2006 4201 1 chr2D.!!$R1 2195
7 TraesCS6D01G237300 chr7D 153132314 153134508 2194 False 3668.000000 3668 96.817 2006 4203 1 chr7D.!!$F1 2197
8 TraesCS6D01G237300 chr1D 12015013 12017171 2158 False 3576.000000 3576 96.534 2006 4168 1 chr1D.!!$F1 2162
9 TraesCS6D01G237300 chr2B 8691889 8694089 2200 True 3548.000000 3548 95.820 2006 4199 1 chr2B.!!$R1 2193
10 TraesCS6D01G237300 chr6B 484986961 484990732 3771 True 2009.333333 3253 94.759 58 6168 3 chr6B.!!$R3 6110
11 TraesCS6D01G237300 chr6A 475259602 475263705 4103 False 979.333333 2344 91.184 110 6618 6 chr6A.!!$F2 6508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
345 384 0.034767 ACTGTCGTCCCGTCCTATGA 60.035 55.0 0.0 0.0 0.00 2.15 F
703 746 0.035439 GCCTCTCGATTCAACCCCAA 60.035 55.0 0.0 0.0 0.00 4.12 F
1619 1683 0.740868 TCTCCTCAAAAGCGATGGCG 60.741 55.0 0.0 0.0 46.35 5.69 F
2138 2222 2.766345 TTTTTACGGGTCGGCTATGT 57.234 45.0 0.0 0.0 0.00 2.29 F
4170 4271 0.961857 GTTATTTTGCGGGTCGGGGT 60.962 55.0 0.0 0.0 0.00 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2138 2222 2.260869 GCGCAAAGAGCAGAACCCA 61.261 57.895 0.30 0.00 46.13 4.51 R
3160 3247 2.288763 TGAGTCTGTGCGTAGATTTGCA 60.289 45.455 0.00 0.00 39.13 4.08 R
3473 3562 2.031919 TCGGGCGTCTGTGCATTT 59.968 55.556 0.00 0.00 36.28 2.32 R
4452 4564 0.544120 GGGAATTTCCAGCCCCACAA 60.544 55.000 17.08 0.00 38.64 3.33 R
6300 6476 0.032678 ATCGATGGTGAGCGTCATCC 59.967 55.000 0.00 3.48 37.16 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.844420 GATTGGACTCTCCTGGCG 57.156 61.111 0.00 0.00 37.46 5.69
18 19 1.144936 GATTGGACTCTCCTGGCGG 59.855 63.158 0.00 0.00 37.46 6.13
19 20 2.932130 GATTGGACTCTCCTGGCGGC 62.932 65.000 0.00 0.00 37.46 6.53
33 34 4.530857 CGGCGGCTAGGGTTCCAG 62.531 72.222 7.61 0.00 0.00 3.86
34 35 4.858680 GGCGGCTAGGGTTCCAGC 62.859 72.222 0.00 0.00 37.05 4.85
38 39 4.858680 GCTAGGGTTCCAGCCGCC 62.859 72.222 0.00 0.00 41.56 6.13
39 40 3.399181 CTAGGGTTCCAGCCGCCA 61.399 66.667 0.00 0.00 41.56 5.69
40 41 3.391665 CTAGGGTTCCAGCCGCCAG 62.392 68.421 0.00 0.00 41.56 4.85
43 44 4.785453 GGTTCCAGCCGCCAGGAG 62.785 72.222 0.00 0.00 41.02 3.69
53 54 3.444805 GCCAGGAGCGAGAGACGT 61.445 66.667 0.00 0.00 44.60 4.34
54 55 2.795297 CCAGGAGCGAGAGACGTC 59.205 66.667 7.70 7.70 44.60 4.34
55 56 2.041115 CCAGGAGCGAGAGACGTCA 61.041 63.158 19.50 0.00 44.60 4.35
56 57 1.427419 CAGGAGCGAGAGACGTCAG 59.573 63.158 19.50 7.14 44.60 3.51
72 73 4.504858 ACGTCAGAGTTCTTTGTTTCAGT 58.495 39.130 0.00 0.00 0.00 3.41
101 102 7.453034 CAATTGCACTGATCATTTGATTTCAC 58.547 34.615 8.34 0.00 34.37 3.18
205 211 6.462073 TGAATTCTATCGGTTTAATAGCGC 57.538 37.500 7.05 0.00 46.86 5.92
233 272 5.214293 TCCCTTGGGAATAGGAAGTAGTAC 58.786 45.833 5.82 0.00 34.56 2.73
345 384 0.034767 ACTGTCGTCCCGTCCTATGA 60.035 55.000 0.00 0.00 0.00 2.15
378 417 0.841289 TTCCGGGGCCGAAGATAATT 59.159 50.000 0.00 0.00 42.83 1.40
382 421 2.612221 CCGGGGCCGAAGATAATTACTC 60.612 54.545 0.00 0.00 42.83 2.59
384 423 2.290134 GGGGCCGAAGATAATTACTCCC 60.290 54.545 0.00 0.00 0.00 4.30
385 424 2.638363 GGGCCGAAGATAATTACTCCCT 59.362 50.000 0.00 0.00 0.00 4.20
386 425 3.306849 GGGCCGAAGATAATTACTCCCTC 60.307 52.174 0.00 0.00 0.00 4.30
387 426 3.306849 GGCCGAAGATAATTACTCCCTCC 60.307 52.174 0.00 0.00 0.00 4.30
389 428 4.020128 GCCGAAGATAATTACTCCCTCCAT 60.020 45.833 0.00 0.00 0.00 3.41
390 429 5.725362 CCGAAGATAATTACTCCCTCCATC 58.275 45.833 0.00 0.00 0.00 3.51
391 430 5.482175 CCGAAGATAATTACTCCCTCCATCT 59.518 44.000 0.00 0.00 0.00 2.90
392 431 6.350612 CCGAAGATAATTACTCCCTCCATCTC 60.351 46.154 0.00 0.00 0.00 2.75
393 432 6.209589 CGAAGATAATTACTCCCTCCATCTCA 59.790 42.308 0.00 0.00 0.00 3.27
394 433 7.093552 CGAAGATAATTACTCCCTCCATCTCAT 60.094 40.741 0.00 0.00 0.00 2.90
395 434 9.261035 GAAGATAATTACTCCCTCCATCTCATA 57.739 37.037 0.00 0.00 0.00 2.15
396 435 9.621239 AAGATAATTACTCCCTCCATCTCATAA 57.379 33.333 0.00 0.00 0.00 1.90
397 436 9.796242 AGATAATTACTCCCTCCATCTCATAAT 57.204 33.333 0.00 0.00 0.00 1.28
401 440 7.646548 TTACTCCCTCCATCTCATAATATCG 57.353 40.000 0.00 0.00 0.00 2.92
402 441 5.584913 ACTCCCTCCATCTCATAATATCGT 58.415 41.667 0.00 0.00 0.00 3.73
403 442 6.019748 ACTCCCTCCATCTCATAATATCGTT 58.980 40.000 0.00 0.00 0.00 3.85
404 443 6.498651 ACTCCCTCCATCTCATAATATCGTTT 59.501 38.462 0.00 0.00 0.00 3.60
405 444 7.016661 ACTCCCTCCATCTCATAATATCGTTTT 59.983 37.037 0.00 0.00 0.00 2.43
406 445 8.430573 TCCCTCCATCTCATAATATCGTTTTA 57.569 34.615 0.00 0.00 0.00 1.52
407 446 8.876181 TCCCTCCATCTCATAATATCGTTTTAA 58.124 33.333 0.00 0.00 0.00 1.52
408 447 8.936864 CCCTCCATCTCATAATATCGTTTTAAC 58.063 37.037 0.00 0.00 0.00 2.01
409 448 9.489084 CCTCCATCTCATAATATCGTTTTAACA 57.511 33.333 0.00 0.00 0.00 2.41
474 513 7.989416 AAACGTTCTTATATTTTGGGACAGA 57.011 32.000 0.00 0.00 42.39 3.41
475 514 7.611213 AACGTTCTTATATTTTGGGACAGAG 57.389 36.000 0.00 0.00 42.39 3.35
476 515 6.113411 ACGTTCTTATATTTTGGGACAGAGG 58.887 40.000 0.00 0.00 42.39 3.69
477 516 5.527582 CGTTCTTATATTTTGGGACAGAGGG 59.472 44.000 0.00 0.00 42.39 4.30
478 517 6.631766 CGTTCTTATATTTTGGGACAGAGGGA 60.632 42.308 0.00 0.00 42.39 4.20
479 518 6.500589 TCTTATATTTTGGGACAGAGGGAG 57.499 41.667 0.00 0.00 42.39 4.30
480 519 5.970640 TCTTATATTTTGGGACAGAGGGAGT 59.029 40.000 0.00 0.00 42.39 3.85
481 520 7.136885 TCTTATATTTTGGGACAGAGGGAGTA 58.863 38.462 0.00 0.00 42.39 2.59
482 521 5.632034 ATATTTTGGGACAGAGGGAGTAC 57.368 43.478 0.00 0.00 42.39 2.73
483 522 2.715763 TTTGGGACAGAGGGAGTACT 57.284 50.000 0.00 0.00 42.39 2.73
484 523 3.839323 TTTGGGACAGAGGGAGTACTA 57.161 47.619 0.00 0.00 42.39 1.82
509 548 0.391228 AATTGGACCCAAACGGCAAC 59.609 50.000 5.49 0.00 39.55 4.17
639 682 2.358737 CGTTTCCTCCCAGCGCTT 60.359 61.111 7.50 0.00 0.00 4.68
703 746 0.035439 GCCTCTCGATTCAACCCCAA 60.035 55.000 0.00 0.00 0.00 4.12
708 752 3.821033 CTCTCGATTCAACCCCAAGTTTT 59.179 43.478 0.00 0.00 36.18 2.43
722 766 3.752747 CCAAGTTTTCCATCAATTTGGGC 59.247 43.478 0.00 0.00 37.36 5.36
937 989 1.359459 CCTACCTTCGCTCGGCAAAC 61.359 60.000 0.00 0.00 0.00 2.93
940 992 1.966451 CCTTCGCTCGGCAAACCTT 60.966 57.895 0.00 0.00 0.00 3.50
1014 1066 1.219469 TCTTAGATGGGGACGGGATCA 59.781 52.381 0.00 0.00 0.00 2.92
1029 1081 2.068277 GATCAAGCATCCTTGGCGCC 62.068 60.000 22.73 22.73 46.69 6.53
1619 1683 0.740868 TCTCCTCAAAAGCGATGGCG 60.741 55.000 0.00 0.00 46.35 5.69
1789 1862 5.010617 GGTTTTCTGATTCAGGTTAAAGCCA 59.989 40.000 18.92 0.00 31.50 4.75
1820 1893 5.773575 TGGAGTATCGCTGACATATTCTTC 58.226 41.667 0.00 0.00 34.37 2.87
2138 2222 2.766345 TTTTTACGGGTCGGCTATGT 57.234 45.000 0.00 0.00 0.00 2.29
2311 2396 6.252655 CACCGTAGCAAACTTAAAATAATGCC 59.747 38.462 0.00 0.00 34.44 4.40
3160 3247 2.814280 AGACACGGACGATCACTTTT 57.186 45.000 0.00 0.00 0.00 2.27
3204 3291 3.354948 TGTGCTATCTTCACCAATGCT 57.645 42.857 0.00 0.00 33.71 3.79
3689 3782 1.599667 CGGCGCGTCAATCTACTACAT 60.600 52.381 12.89 0.00 0.00 2.29
4092 4192 2.290008 CCCCTAAAAATTTTTGCGGGCT 60.290 45.455 29.52 9.68 39.18 5.19
4170 4271 0.961857 GTTATTTTGCGGGTCGGGGT 60.962 55.000 0.00 0.00 0.00 4.95
4326 4428 9.337396 TGGATGTTAACCTTGTATTAGCATAAG 57.663 33.333 2.48 0.00 34.70 1.73
4391 4503 8.559536 GTGATCAGTGAGAAGTAAAACATTTCA 58.440 33.333 0.00 0.00 0.00 2.69
4412 4524 9.722184 ATTTCATCTGACACAGATCTATTATGG 57.278 33.333 10.72 0.00 46.83 2.74
4542 4657 5.120208 CCACATTAACCGACTACAAACAGAG 59.880 44.000 0.00 0.00 0.00 3.35
4606 4721 4.469657 GAAAATATATGGTGGCCTGGTGA 58.530 43.478 3.32 0.00 0.00 4.02
4645 4760 6.916360 ATGAAATAACCTTCTTGCCTTGAA 57.084 33.333 0.00 0.00 0.00 2.69
4872 4988 4.522405 TGTGTTGCTTTGTACTGGCATTAT 59.478 37.500 8.30 0.00 35.84 1.28
4971 5102 7.795431 AGCGTTTGTATGTATTGATGTTTTG 57.205 32.000 0.00 0.00 0.00 2.44
5106 5237 3.933861 ACATTTCCTAGCCCTTCGATT 57.066 42.857 0.00 0.00 0.00 3.34
5107 5238 3.545703 ACATTTCCTAGCCCTTCGATTG 58.454 45.455 0.00 0.00 0.00 2.67
5458 5606 1.751924 AGCTGGATTCTCTACCACGTC 59.248 52.381 0.00 0.00 32.44 4.34
5748 5896 7.945134 TCATTTTCTTTCTTCTTCCTTTCTGG 58.055 34.615 0.00 0.00 37.10 3.86
5968 6116 4.159693 TCTGCGTCGCCCTATGATTATAAT 59.840 41.667 15.88 0.00 0.00 1.28
6018 6166 2.104170 TCCAGCCCTTCGTTTGTTTTT 58.896 42.857 0.00 0.00 0.00 1.94
6021 6169 4.342665 TCCAGCCCTTCGTTTGTTTTTATT 59.657 37.500 0.00 0.00 0.00 1.40
6022 6170 5.053811 CCAGCCCTTCGTTTGTTTTTATTT 58.946 37.500 0.00 0.00 0.00 1.40
6218 6394 0.826062 GGGGACAAATGCAAGGATGG 59.174 55.000 0.00 0.00 0.00 3.51
6219 6395 0.176449 GGGACAAATGCAAGGATGGC 59.824 55.000 0.00 0.00 33.57 4.40
6220 6396 0.179129 GGACAAATGCAAGGATGGCG 60.179 55.000 0.00 0.00 38.51 5.69
6221 6397 0.803380 GACAAATGCAAGGATGGCGC 60.803 55.000 0.00 0.00 38.51 6.53
6222 6398 1.252904 ACAAATGCAAGGATGGCGCT 61.253 50.000 7.64 0.00 38.51 5.92
6223 6399 0.526954 CAAATGCAAGGATGGCGCTC 60.527 55.000 7.64 0.00 38.51 5.03
6224 6400 0.966875 AAATGCAAGGATGGCGCTCA 60.967 50.000 7.64 3.81 38.51 4.26
6225 6401 1.660560 AATGCAAGGATGGCGCTCAC 61.661 55.000 7.64 0.00 38.51 3.51
6226 6402 2.437359 GCAAGGATGGCGCTCACT 60.437 61.111 7.64 0.00 0.00 3.41
6227 6403 2.042831 GCAAGGATGGCGCTCACTT 61.043 57.895 7.64 4.30 0.00 3.16
6228 6404 1.798735 CAAGGATGGCGCTCACTTG 59.201 57.895 7.64 13.15 33.49 3.16
6229 6405 1.377725 AAGGATGGCGCTCACTTGG 60.378 57.895 7.64 0.00 0.00 3.61
6230 6406 3.512516 GGATGGCGCTCACTTGGC 61.513 66.667 7.64 0.00 0.00 4.52
6231 6407 2.437359 GATGGCGCTCACTTGGCT 60.437 61.111 7.64 0.00 0.00 4.75
6232 6408 2.749044 ATGGCGCTCACTTGGCTG 60.749 61.111 7.64 0.00 0.00 4.85
6235 6411 2.434884 GCGCTCACTTGGCTGCTA 60.435 61.111 0.00 0.00 0.00 3.49
6236 6412 2.034879 GCGCTCACTTGGCTGCTAA 61.035 57.895 0.00 0.00 0.00 3.09
6237 6413 1.577328 GCGCTCACTTGGCTGCTAAA 61.577 55.000 0.00 0.00 0.00 1.85
6238 6414 1.089920 CGCTCACTTGGCTGCTAAAT 58.910 50.000 0.00 0.00 0.00 1.40
6239 6415 1.470098 CGCTCACTTGGCTGCTAAATT 59.530 47.619 0.00 0.00 0.00 1.82
6240 6416 2.095059 CGCTCACTTGGCTGCTAAATTT 60.095 45.455 0.00 0.00 0.00 1.82
6241 6417 3.248266 GCTCACTTGGCTGCTAAATTTG 58.752 45.455 0.00 0.00 0.00 2.32
6242 6418 3.057315 GCTCACTTGGCTGCTAAATTTGA 60.057 43.478 0.00 2.62 0.00 2.69
6243 6419 4.559300 GCTCACTTGGCTGCTAAATTTGAA 60.559 41.667 0.00 0.00 0.00 2.69
6244 6420 5.528043 TCACTTGGCTGCTAAATTTGAAA 57.472 34.783 0.00 0.00 0.00 2.69
6245 6421 5.911752 TCACTTGGCTGCTAAATTTGAAAA 58.088 33.333 0.00 0.00 0.00 2.29
6246 6422 5.984926 TCACTTGGCTGCTAAATTTGAAAAG 59.015 36.000 0.00 0.00 0.00 2.27
6247 6423 5.984926 CACTTGGCTGCTAAATTTGAAAAGA 59.015 36.000 0.00 0.00 0.00 2.52
6248 6424 6.479660 CACTTGGCTGCTAAATTTGAAAAGAA 59.520 34.615 0.00 0.00 0.00 2.52
6249 6425 7.011295 CACTTGGCTGCTAAATTTGAAAAGAAA 59.989 33.333 0.00 0.00 0.00 2.52
6250 6426 7.552330 ACTTGGCTGCTAAATTTGAAAAGAAAA 59.448 29.630 0.00 0.00 0.00 2.29
6251 6427 7.856145 TGGCTGCTAAATTTGAAAAGAAAAA 57.144 28.000 0.00 0.00 0.00 1.94
6252 6428 8.449251 TGGCTGCTAAATTTGAAAAGAAAAAT 57.551 26.923 0.00 0.00 0.00 1.82
6253 6429 8.344098 TGGCTGCTAAATTTGAAAAGAAAAATG 58.656 29.630 0.00 0.00 0.00 2.32
6254 6430 8.558700 GGCTGCTAAATTTGAAAAGAAAAATGA 58.441 29.630 0.00 0.00 0.00 2.57
6262 6438 9.902196 AATTTGAAAAGAAAAATGATTGGATGC 57.098 25.926 0.00 0.00 0.00 3.91
6263 6439 8.447924 TTTGAAAAGAAAAATGATTGGATGCA 57.552 26.923 0.00 0.00 0.00 3.96
6264 6440 8.624367 TTGAAAAGAAAAATGATTGGATGCAT 57.376 26.923 0.00 0.00 0.00 3.96
6265 6441 8.259049 TGAAAAGAAAAATGATTGGATGCATC 57.741 30.769 18.81 18.81 0.00 3.91
6266 6442 8.098286 TGAAAAGAAAAATGATTGGATGCATCT 58.902 29.630 25.28 6.65 0.00 2.90
6267 6443 8.857694 AAAAGAAAAATGATTGGATGCATCTT 57.142 26.923 25.28 11.34 0.00 2.40
6268 6444 7.843490 AAGAAAAATGATTGGATGCATCTTG 57.157 32.000 25.28 0.00 0.00 3.02
6269 6445 7.177832 AGAAAAATGATTGGATGCATCTTGA 57.822 32.000 25.28 12.31 0.00 3.02
6270 6446 7.617225 AGAAAAATGATTGGATGCATCTTGAA 58.383 30.769 25.28 15.77 0.00 2.69
6271 6447 7.764443 AGAAAAATGATTGGATGCATCTTGAAG 59.236 33.333 25.28 0.00 0.00 3.02
6272 6448 4.585955 ATGATTGGATGCATCTTGAAGC 57.414 40.909 25.28 17.64 0.00 3.86
6273 6449 3.358118 TGATTGGATGCATCTTGAAGCA 58.642 40.909 25.28 19.68 45.92 3.91
6274 6450 3.380320 TGATTGGATGCATCTTGAAGCAG 59.620 43.478 25.28 0.00 44.94 4.24
6275 6451 2.793288 TGGATGCATCTTGAAGCAGA 57.207 45.000 25.28 0.00 44.94 4.26
6276 6452 3.076079 TGGATGCATCTTGAAGCAGAA 57.924 42.857 25.28 0.00 44.94 3.02
6277 6453 3.014623 TGGATGCATCTTGAAGCAGAAG 58.985 45.455 25.28 0.00 44.94 2.85
6278 6454 2.358267 GGATGCATCTTGAAGCAGAAGG 59.642 50.000 25.28 0.00 44.94 3.46
6279 6455 1.171308 TGCATCTTGAAGCAGAAGGC 58.829 50.000 0.00 0.00 45.30 4.35
6282 6458 7.718645 GATGCATCTTGAAGCAGAAGGCATC 62.719 48.000 19.70 17.86 46.34 3.91
6288 6464 2.514824 GCAGAAGGCATCGGGGAC 60.515 66.667 0.00 0.00 43.97 4.46
6289 6465 2.989639 CAGAAGGCATCGGGGACA 59.010 61.111 0.00 0.00 0.00 4.02
6290 6466 1.299648 CAGAAGGCATCGGGGACAA 59.700 57.895 0.00 0.00 0.00 3.18
6291 6467 0.322456 CAGAAGGCATCGGGGACAAA 60.322 55.000 0.00 0.00 0.00 2.83
6292 6468 0.625849 AGAAGGCATCGGGGACAAAT 59.374 50.000 0.00 0.00 0.00 2.32
6293 6469 0.740737 GAAGGCATCGGGGACAAATG 59.259 55.000 0.00 0.00 0.00 2.32
6294 6470 1.322538 AAGGCATCGGGGACAAATGC 61.323 55.000 0.00 0.00 44.32 3.56
6295 6471 2.051518 GGCATCGGGGACAAATGCA 61.052 57.895 8.61 0.00 45.92 3.96
6296 6472 1.603236 GGCATCGGGGACAAATGCAA 61.603 55.000 8.61 0.00 45.92 4.08
6297 6473 0.461135 GCATCGGGGACAAATGCAAT 59.539 50.000 0.00 0.00 44.41 3.56
6298 6474 1.680735 GCATCGGGGACAAATGCAATA 59.319 47.619 0.00 0.00 44.41 1.90
6299 6475 2.100584 GCATCGGGGACAAATGCAATAA 59.899 45.455 0.00 0.00 44.41 1.40
6300 6476 3.796504 GCATCGGGGACAAATGCAATAAG 60.797 47.826 0.00 0.00 44.41 1.73
6301 6477 2.374184 TCGGGGACAAATGCAATAAGG 58.626 47.619 0.00 0.00 0.00 2.69
6302 6478 2.025793 TCGGGGACAAATGCAATAAGGA 60.026 45.455 0.00 0.00 0.00 3.36
6303 6479 2.958355 CGGGGACAAATGCAATAAGGAT 59.042 45.455 0.00 0.00 0.00 3.24
6304 6480 3.243501 CGGGGACAAATGCAATAAGGATG 60.244 47.826 0.00 0.00 0.00 3.51
6305 6481 3.960102 GGGGACAAATGCAATAAGGATGA 59.040 43.478 0.00 0.00 0.00 2.92
6306 6482 4.202151 GGGGACAAATGCAATAAGGATGAC 60.202 45.833 0.00 0.00 0.00 3.06
6307 6483 4.498009 GGGACAAATGCAATAAGGATGACG 60.498 45.833 0.00 0.00 0.00 4.35
6308 6484 4.032703 ACAAATGCAATAAGGATGACGC 57.967 40.909 0.00 0.00 0.00 5.19
6309 6485 3.696051 ACAAATGCAATAAGGATGACGCT 59.304 39.130 0.00 0.00 0.00 5.07
6310 6486 4.201950 ACAAATGCAATAAGGATGACGCTC 60.202 41.667 0.00 0.00 0.00 5.03
6311 6487 2.689553 TGCAATAAGGATGACGCTCA 57.310 45.000 0.00 0.00 0.00 4.26
6312 6488 2.279741 TGCAATAAGGATGACGCTCAC 58.720 47.619 0.00 0.00 0.00 3.51
6313 6489 1.599542 GCAATAAGGATGACGCTCACC 59.400 52.381 0.00 0.00 0.00 4.02
6314 6490 2.905075 CAATAAGGATGACGCTCACCA 58.095 47.619 0.00 0.00 0.00 4.17
6315 6491 3.470709 CAATAAGGATGACGCTCACCAT 58.529 45.455 0.00 0.00 0.00 3.55
6316 6492 2.890808 TAAGGATGACGCTCACCATC 57.109 50.000 0.00 0.00 38.66 3.51
6317 6493 0.179100 AAGGATGACGCTCACCATCG 60.179 55.000 0.00 0.00 39.90 3.84
6318 6494 1.037579 AGGATGACGCTCACCATCGA 61.038 55.000 0.00 0.00 39.90 3.59
6319 6495 0.032678 GGATGACGCTCACCATCGAT 59.967 55.000 0.00 0.00 39.90 3.59
6320 6496 1.413382 GATGACGCTCACCATCGATC 58.587 55.000 0.00 0.00 31.20 3.69
6321 6497 1.000827 GATGACGCTCACCATCGATCT 60.001 52.381 0.00 0.00 31.20 2.75
6322 6498 0.101219 TGACGCTCACCATCGATCTG 59.899 55.000 0.00 0.00 0.00 2.90
6323 6499 0.596083 GACGCTCACCATCGATCTGG 60.596 60.000 3.43 3.43 42.35 3.86
6324 6500 1.953138 CGCTCACCATCGATCTGGC 60.953 63.158 4.93 4.55 40.15 4.85
6325 6501 1.144716 GCTCACCATCGATCTGGCA 59.855 57.895 4.93 0.00 40.15 4.92
6326 6502 0.250209 GCTCACCATCGATCTGGCAT 60.250 55.000 4.93 0.00 40.15 4.40
6327 6503 1.793258 CTCACCATCGATCTGGCATC 58.207 55.000 4.93 0.00 40.15 3.91
6328 6504 1.343789 CTCACCATCGATCTGGCATCT 59.656 52.381 4.93 0.00 40.15 2.90
6329 6505 1.069668 TCACCATCGATCTGGCATCTG 59.930 52.381 4.93 0.00 40.15 2.90
6330 6506 0.250209 ACCATCGATCTGGCATCTGC 60.250 55.000 4.93 0.00 40.15 4.26
6331 6507 0.250166 CCATCGATCTGGCATCTGCA 60.250 55.000 4.33 0.00 44.36 4.41
6332 6508 1.589803 CATCGATCTGGCATCTGCAA 58.410 50.000 4.33 0.00 44.36 4.08
6333 6509 2.152016 CATCGATCTGGCATCTGCAAT 58.848 47.619 4.33 0.00 44.36 3.56
6334 6510 3.332034 CATCGATCTGGCATCTGCAATA 58.668 45.455 4.33 0.00 44.36 1.90
6335 6511 3.473923 TCGATCTGGCATCTGCAATAA 57.526 42.857 4.33 0.00 44.36 1.40
6336 6512 3.396560 TCGATCTGGCATCTGCAATAAG 58.603 45.455 4.33 0.00 44.36 1.73
6337 6513 3.070015 TCGATCTGGCATCTGCAATAAGA 59.930 43.478 4.33 2.14 44.36 2.10
6338 6514 3.811497 CGATCTGGCATCTGCAATAAGAA 59.189 43.478 4.33 0.00 44.36 2.52
6339 6515 4.274214 CGATCTGGCATCTGCAATAAGAAA 59.726 41.667 4.33 0.00 44.36 2.52
6340 6516 5.048921 CGATCTGGCATCTGCAATAAGAAAT 60.049 40.000 4.33 0.00 44.36 2.17
6341 6517 5.762825 TCTGGCATCTGCAATAAGAAATC 57.237 39.130 4.33 0.00 44.36 2.17
6342 6518 5.443283 TCTGGCATCTGCAATAAGAAATCT 58.557 37.500 4.33 0.00 44.36 2.40
6343 6519 6.594744 TCTGGCATCTGCAATAAGAAATCTA 58.405 36.000 4.33 0.00 44.36 1.98
6344 6520 6.709397 TCTGGCATCTGCAATAAGAAATCTAG 59.291 38.462 4.33 0.00 44.36 2.43
6345 6521 5.240183 TGGCATCTGCAATAAGAAATCTAGC 59.760 40.000 4.33 0.00 44.36 3.42
6346 6522 5.240183 GGCATCTGCAATAAGAAATCTAGCA 59.760 40.000 4.33 0.00 44.36 3.49
6347 6523 6.238842 GGCATCTGCAATAAGAAATCTAGCAA 60.239 38.462 4.33 0.00 44.36 3.91
6348 6524 6.856938 GCATCTGCAATAAGAAATCTAGCAAG 59.143 38.462 0.00 0.00 41.59 4.01
6349 6525 7.468357 GCATCTGCAATAAGAAATCTAGCAAGT 60.468 37.037 0.00 0.00 41.59 3.16
6350 6526 7.312657 TCTGCAATAAGAAATCTAGCAAGTG 57.687 36.000 0.00 0.00 0.00 3.16
6351 6527 5.883661 TGCAATAAGAAATCTAGCAAGTGC 58.116 37.500 0.00 0.00 42.49 4.40
6352 6528 5.415389 TGCAATAAGAAATCTAGCAAGTGCA 59.585 36.000 6.00 0.00 45.16 4.57
6353 6529 6.072008 TGCAATAAGAAATCTAGCAAGTGCAA 60.072 34.615 6.00 0.00 45.16 4.08
6354 6530 6.976925 GCAATAAGAAATCTAGCAAGTGCAAT 59.023 34.615 6.00 0.00 45.16 3.56
6355 6531 7.043590 GCAATAAGAAATCTAGCAAGTGCAATG 60.044 37.037 6.00 0.00 45.16 2.82
6356 6532 7.870509 ATAAGAAATCTAGCAAGTGCAATGA 57.129 32.000 6.00 1.08 45.16 2.57
6357 6533 5.557891 AGAAATCTAGCAAGTGCAATGAC 57.442 39.130 6.00 0.00 45.16 3.06
6358 6534 5.005740 AGAAATCTAGCAAGTGCAATGACA 58.994 37.500 6.00 0.00 45.16 3.58
6359 6535 5.474532 AGAAATCTAGCAAGTGCAATGACAA 59.525 36.000 6.00 0.00 45.16 3.18
6360 6536 4.959596 ATCTAGCAAGTGCAATGACAAG 57.040 40.909 6.00 0.00 45.16 3.16
6361 6537 4.006780 TCTAGCAAGTGCAATGACAAGA 57.993 40.909 6.00 1.73 45.16 3.02
6362 6538 3.999001 TCTAGCAAGTGCAATGACAAGAG 59.001 43.478 6.00 0.00 45.16 2.85
6363 6539 2.579873 AGCAAGTGCAATGACAAGAGT 58.420 42.857 6.00 0.00 45.16 3.24
6364 6540 2.292569 AGCAAGTGCAATGACAAGAGTG 59.707 45.455 6.00 0.00 45.16 3.51
6365 6541 2.606308 GCAAGTGCAATGACAAGAGTGG 60.606 50.000 5.00 0.00 41.59 4.00
6366 6542 2.620115 CAAGTGCAATGACAAGAGTGGT 59.380 45.455 0.00 0.00 0.00 4.16
6367 6543 3.769739 AGTGCAATGACAAGAGTGGTA 57.230 42.857 0.00 0.00 0.00 3.25
6368 6544 4.085357 AGTGCAATGACAAGAGTGGTAA 57.915 40.909 0.00 0.00 0.00 2.85
6369 6545 4.655963 AGTGCAATGACAAGAGTGGTAAT 58.344 39.130 0.00 0.00 0.00 1.89
6370 6546 5.804639 AGTGCAATGACAAGAGTGGTAATA 58.195 37.500 0.00 0.00 0.00 0.98
6371 6547 5.877012 AGTGCAATGACAAGAGTGGTAATAG 59.123 40.000 0.00 0.00 0.00 1.73
6372 6548 5.065218 GTGCAATGACAAGAGTGGTAATAGG 59.935 44.000 0.00 0.00 0.00 2.57
6373 6549 4.576463 GCAATGACAAGAGTGGTAATAGGG 59.424 45.833 0.00 0.00 0.00 3.53
6374 6550 5.629133 GCAATGACAAGAGTGGTAATAGGGA 60.629 44.000 0.00 0.00 0.00 4.20
6375 6551 5.878406 ATGACAAGAGTGGTAATAGGGAG 57.122 43.478 0.00 0.00 0.00 4.30
6376 6552 4.030913 TGACAAGAGTGGTAATAGGGAGG 58.969 47.826 0.00 0.00 0.00 4.30
6377 6553 4.031611 GACAAGAGTGGTAATAGGGAGGT 58.968 47.826 0.00 0.00 0.00 3.85
6378 6554 3.775316 ACAAGAGTGGTAATAGGGAGGTG 59.225 47.826 0.00 0.00 0.00 4.00
6379 6555 3.775316 CAAGAGTGGTAATAGGGAGGTGT 59.225 47.826 0.00 0.00 0.00 4.16
6380 6556 4.894252 AGAGTGGTAATAGGGAGGTGTA 57.106 45.455 0.00 0.00 0.00 2.90
6381 6557 4.805744 AGAGTGGTAATAGGGAGGTGTAG 58.194 47.826 0.00 0.00 0.00 2.74
6440 6616 2.565841 GCTCCCATGTGTCTATTGTCC 58.434 52.381 0.00 0.00 0.00 4.02
6489 6665 2.817258 GTTGGTCGATGGGTTTCATTGA 59.183 45.455 0.00 0.00 42.43 2.57
6495 6671 5.049405 GGTCGATGGGTTTCATTGATATGAC 60.049 44.000 0.00 0.00 45.26 3.06
6507 6683 4.908601 TTGATATGACCCAAGTGTCTGT 57.091 40.909 0.00 0.00 36.21 3.41
6522 6698 0.689055 TCTGTGGCTGCATTGAGTCT 59.311 50.000 0.50 0.00 0.00 3.24
6523 6699 1.901833 TCTGTGGCTGCATTGAGTCTA 59.098 47.619 0.50 0.00 0.00 2.59
6597 6773 3.111853 TGAGTGAGCAAGTTCGTGATT 57.888 42.857 0.00 0.00 0.00 2.57
6600 6776 5.961272 TGAGTGAGCAAGTTCGTGATTATA 58.039 37.500 0.00 0.00 0.00 0.98
6616 6792 9.233649 TCGTGATTATATTAACCTGGTTTTTGT 57.766 29.630 18.58 6.66 0.00 2.83
6617 6793 9.498307 CGTGATTATATTAACCTGGTTTTTGTC 57.502 33.333 18.58 7.93 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.144936 CCGCCAGGAGAGTCCAATC 59.855 63.158 0.00 0.00 39.61 2.67
1 2 3.036429 GCCGCCAGGAGAGTCCAAT 62.036 63.158 0.00 0.00 39.61 3.16
2 3 3.706373 GCCGCCAGGAGAGTCCAA 61.706 66.667 0.00 0.00 39.61 3.53
16 17 4.530857 CTGGAACCCTAGCCGCCG 62.531 72.222 0.00 0.00 0.00 6.46
17 18 4.858680 GCTGGAACCCTAGCCGCC 62.859 72.222 0.00 0.00 33.89 6.13
21 22 4.858680 GGCGGCTGGAACCCTAGC 62.859 72.222 0.00 0.00 39.17 3.42
22 23 3.391665 CTGGCGGCTGGAACCCTAG 62.392 68.421 11.43 0.00 0.00 3.02
23 24 3.399181 CTGGCGGCTGGAACCCTA 61.399 66.667 11.43 0.00 0.00 3.53
26 27 4.785453 CTCCTGGCGGCTGGAACC 62.785 72.222 32.13 2.47 31.23 3.62
36 37 3.404141 GACGTCTCTCGCTCCTGGC 62.404 68.421 8.70 0.00 44.19 4.85
37 38 1.987704 CTGACGTCTCTCGCTCCTGG 61.988 65.000 17.92 0.00 44.19 4.45
38 39 1.021920 TCTGACGTCTCTCGCTCCTG 61.022 60.000 17.92 0.00 44.19 3.86
39 40 0.742990 CTCTGACGTCTCTCGCTCCT 60.743 60.000 17.92 0.00 44.19 3.69
40 41 1.022451 ACTCTGACGTCTCTCGCTCC 61.022 60.000 17.92 0.00 44.19 4.70
41 42 0.800012 AACTCTGACGTCTCTCGCTC 59.200 55.000 17.92 0.00 44.19 5.03
42 43 0.800012 GAACTCTGACGTCTCTCGCT 59.200 55.000 17.92 0.00 44.19 4.93
43 44 0.800012 AGAACTCTGACGTCTCTCGC 59.200 55.000 17.92 2.14 44.19 5.03
44 45 3.230355 CAAAGAACTCTGACGTCTCTCG 58.770 50.000 17.92 5.23 46.00 4.04
45 46 4.231718 ACAAAGAACTCTGACGTCTCTC 57.768 45.455 17.92 6.03 0.00 3.20
46 47 4.657436 AACAAAGAACTCTGACGTCTCT 57.343 40.909 17.92 7.80 0.00 3.10
47 48 4.804139 TGAAACAAAGAACTCTGACGTCTC 59.196 41.667 17.92 5.33 0.00 3.36
48 49 4.755411 TGAAACAAAGAACTCTGACGTCT 58.245 39.130 17.92 0.00 0.00 4.18
49 50 4.567159 ACTGAAACAAAGAACTCTGACGTC 59.433 41.667 9.11 9.11 0.00 4.34
50 51 4.504858 ACTGAAACAAAGAACTCTGACGT 58.495 39.130 0.00 0.00 0.00 4.34
51 52 5.258622 CAACTGAAACAAAGAACTCTGACG 58.741 41.667 0.00 0.00 0.00 4.35
52 53 5.573146 CCAACTGAAACAAAGAACTCTGAC 58.427 41.667 0.00 0.00 0.00 3.51
53 54 4.096382 GCCAACTGAAACAAAGAACTCTGA 59.904 41.667 0.00 0.00 0.00 3.27
54 55 4.142403 TGCCAACTGAAACAAAGAACTCTG 60.142 41.667 0.00 0.00 0.00 3.35
55 56 4.016444 TGCCAACTGAAACAAAGAACTCT 58.984 39.130 0.00 0.00 0.00 3.24
56 57 4.370364 TGCCAACTGAAACAAAGAACTC 57.630 40.909 0.00 0.00 0.00 3.01
72 73 3.965379 AATGATCAGTGCAATTGCCAA 57.035 38.095 26.94 7.20 41.18 4.52
182 188 5.407387 GGCGCTATTAAACCGATAGAATTCA 59.593 40.000 7.64 0.00 39.76 2.57
184 190 5.178809 GTGGCGCTATTAAACCGATAGAATT 59.821 40.000 7.64 0.00 39.76 2.17
188 194 2.735134 GGTGGCGCTATTAAACCGATAG 59.265 50.000 7.64 0.00 0.00 2.08
205 211 0.846693 CCTATTCCCAAGGGAGGTGG 59.153 60.000 8.06 7.79 46.06 4.61
345 384 2.643551 CCCGGAAGATTAGCACAATGT 58.356 47.619 0.73 0.00 0.00 2.71
378 417 6.732487 ACGATATTATGAGATGGAGGGAGTA 58.268 40.000 0.00 0.00 0.00 2.59
382 421 8.936864 GTTAAAACGATATTATGAGATGGAGGG 58.063 37.037 0.00 0.00 0.00 4.30
448 487 8.852135 TCTGTCCCAAAATATAAGAACGTTTTT 58.148 29.630 9.22 9.22 0.00 1.94
449 488 8.398878 TCTGTCCCAAAATATAAGAACGTTTT 57.601 30.769 0.46 0.00 0.00 2.43
450 489 7.120726 CCTCTGTCCCAAAATATAAGAACGTTT 59.879 37.037 0.46 0.00 0.00 3.60
451 490 6.598064 CCTCTGTCCCAAAATATAAGAACGTT 59.402 38.462 0.00 0.00 0.00 3.99
452 491 6.113411 CCTCTGTCCCAAAATATAAGAACGT 58.887 40.000 0.00 0.00 0.00 3.99
453 492 5.527582 CCCTCTGTCCCAAAATATAAGAACG 59.472 44.000 0.00 0.00 0.00 3.95
454 493 6.659824 TCCCTCTGTCCCAAAATATAAGAAC 58.340 40.000 0.00 0.00 0.00 3.01
455 494 6.447084 ACTCCCTCTGTCCCAAAATATAAGAA 59.553 38.462 0.00 0.00 0.00 2.52
456 495 5.970640 ACTCCCTCTGTCCCAAAATATAAGA 59.029 40.000 0.00 0.00 0.00 2.10
457 496 6.253946 ACTCCCTCTGTCCCAAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
458 497 6.906901 AGTACTCCCTCTGTCCCAAAATATAA 59.093 38.462 0.00 0.00 0.00 0.98
459 498 6.449956 AGTACTCCCTCTGTCCCAAAATATA 58.550 40.000 0.00 0.00 0.00 0.86
460 499 5.289510 AGTACTCCCTCTGTCCCAAAATAT 58.710 41.667 0.00 0.00 0.00 1.28
461 500 4.695606 AGTACTCCCTCTGTCCCAAAATA 58.304 43.478 0.00 0.00 0.00 1.40
462 501 3.532102 AGTACTCCCTCTGTCCCAAAAT 58.468 45.455 0.00 0.00 0.00 1.82
463 502 2.986050 AGTACTCCCTCTGTCCCAAAA 58.014 47.619 0.00 0.00 0.00 2.44
464 503 2.715763 AGTACTCCCTCTGTCCCAAA 57.284 50.000 0.00 0.00 0.00 3.28
465 504 4.231195 TGTATAGTACTCCCTCTGTCCCAA 59.769 45.833 0.00 0.00 0.00 4.12
466 505 3.789840 TGTATAGTACTCCCTCTGTCCCA 59.210 47.826 0.00 0.00 0.00 4.37
467 506 4.143543 GTGTATAGTACTCCCTCTGTCCC 58.856 52.174 0.00 0.00 0.00 4.46
468 507 4.789807 TGTGTATAGTACTCCCTCTGTCC 58.210 47.826 0.00 0.00 0.00 4.02
469 508 6.963083 ATTGTGTATAGTACTCCCTCTGTC 57.037 41.667 0.00 0.00 0.00 3.51
470 509 6.098409 CCAATTGTGTATAGTACTCCCTCTGT 59.902 42.308 0.00 0.00 0.00 3.41
471 510 6.323996 TCCAATTGTGTATAGTACTCCCTCTG 59.676 42.308 0.00 0.00 0.00 3.35
472 511 6.324254 GTCCAATTGTGTATAGTACTCCCTCT 59.676 42.308 0.00 0.00 0.00 3.69
473 512 6.462628 GGTCCAATTGTGTATAGTACTCCCTC 60.463 46.154 0.00 0.00 0.00 4.30
474 513 5.365895 GGTCCAATTGTGTATAGTACTCCCT 59.634 44.000 0.00 0.00 0.00 4.20
475 514 5.454329 GGGTCCAATTGTGTATAGTACTCCC 60.454 48.000 0.00 0.00 0.00 4.30
476 515 5.129815 TGGGTCCAATTGTGTATAGTACTCC 59.870 44.000 0.00 0.00 0.00 3.85
477 516 6.229936 TGGGTCCAATTGTGTATAGTACTC 57.770 41.667 0.00 0.00 0.00 2.59
478 517 6.630203 TTGGGTCCAATTGTGTATAGTACT 57.370 37.500 4.43 0.00 0.00 2.73
479 518 6.183360 CGTTTGGGTCCAATTGTGTATAGTAC 60.183 42.308 4.43 0.00 35.70 2.73
480 519 5.875910 CGTTTGGGTCCAATTGTGTATAGTA 59.124 40.000 4.43 0.00 35.70 1.82
481 520 4.698304 CGTTTGGGTCCAATTGTGTATAGT 59.302 41.667 4.43 0.00 35.70 2.12
482 521 4.095782 CCGTTTGGGTCCAATTGTGTATAG 59.904 45.833 4.43 0.00 35.70 1.31
483 522 4.011023 CCGTTTGGGTCCAATTGTGTATA 58.989 43.478 4.43 0.00 35.70 1.47
484 523 2.823154 CCGTTTGGGTCCAATTGTGTAT 59.177 45.455 4.43 0.00 35.70 2.29
509 548 4.737054 ACCTACTGACCGTATAACAAACG 58.263 43.478 0.00 0.00 40.01 3.60
639 682 0.338467 TCCTCGAATGGAAGGGGAGA 59.662 55.000 0.00 0.00 32.39 3.71
698 741 4.325972 CCAAATTGATGGAAAACTTGGGG 58.674 43.478 0.00 0.00 43.54 4.96
703 746 3.261643 GGAGCCCAAATTGATGGAAAACT 59.738 43.478 0.00 0.00 43.54 2.66
708 752 2.852714 ATGGAGCCCAAATTGATGGA 57.147 45.000 0.00 0.00 43.54 3.41
905 950 1.216990 AGGTAGGATTGGAGCCAAGG 58.783 55.000 8.09 0.00 39.47 3.61
963 1015 1.347707 CGGATTATGGCAGCCTTCCTA 59.652 52.381 14.15 0.00 0.00 2.94
1014 1066 3.704231 ATCGGCGCCAAGGATGCTT 62.704 57.895 28.98 0.00 0.00 3.91
1029 1081 1.889105 CTCACCCCAATCGGCATCG 60.889 63.158 0.00 0.00 37.82 3.84
1619 1683 5.473846 TCTTCGGTCATCTATACCTGTGATC 59.526 44.000 0.00 0.00 34.66 2.92
1789 1862 2.893489 TCAGCGATACTCCAGTGCATAT 59.107 45.455 0.00 0.00 0.00 1.78
1820 1893 8.459635 GCAAAATAGGTTCTTTAGGAGTTAAGG 58.540 37.037 0.00 0.00 0.00 2.69
2138 2222 2.260869 GCGCAAAGAGCAGAACCCA 61.261 57.895 0.30 0.00 46.13 4.51
3160 3247 2.288763 TGAGTCTGTGCGTAGATTTGCA 60.289 45.455 0.00 0.00 39.13 4.08
3204 3291 5.106118 GCTGACTATGCCGATGAGTATCTTA 60.106 44.000 0.00 0.00 34.92 2.10
3473 3562 2.031919 TCGGGCGTCTGTGCATTT 59.968 55.556 0.00 0.00 36.28 2.32
3689 3782 4.475763 TTTTTGTGATTTTCGCGAGCTA 57.524 36.364 9.59 0.00 0.00 3.32
4326 4428 6.758886 AGTAGTGTTGCATATTTCACTCTAGC 59.241 38.462 10.56 0.00 40.77 3.42
4452 4564 0.544120 GGGAATTTCCAGCCCCACAA 60.544 55.000 17.08 0.00 38.64 3.33
4542 4657 5.184864 TCAGAGAACCTCTTCTGTTGATCTC 59.815 44.000 0.00 0.00 38.99 2.75
4645 4760 4.114015 TCACTCTCCATATCCCATACGT 57.886 45.455 0.00 0.00 0.00 3.57
4763 4879 7.775397 TTTTAAGGCACTATACGTGTATTCC 57.225 36.000 0.00 0.00 45.57 3.01
4971 5102 6.536582 CCAGTATATGGCTGACTATATGCAAC 59.463 42.308 9.76 0.00 43.83 4.17
5097 5228 5.627499 TGAAAGATGAAACAATCGAAGGG 57.373 39.130 0.00 0.00 0.00 3.95
5458 5606 3.679980 AGTTCGAGATGACAAAATCACCG 59.320 43.478 0.00 0.00 41.24 4.94
5748 5896 5.807011 ACAGAACAAAATGCAAAACTCTCAC 59.193 36.000 0.00 0.00 0.00 3.51
6021 6169 8.791327 TCATTCTAATACATTCAAGCTGACAA 57.209 30.769 0.00 0.00 0.00 3.18
6022 6170 8.969260 ATCATTCTAATACATTCAAGCTGACA 57.031 30.769 0.00 0.00 0.00 3.58
6039 6187 6.377080 ACATCACCCTGAGAGTATCATTCTA 58.623 40.000 0.00 0.00 37.28 2.10
6054 6202 1.676916 CGAGCACATCAACATCACCCT 60.677 52.381 0.00 0.00 0.00 4.34
6218 6394 1.577328 TTTAGCAGCCAAGTGAGCGC 61.577 55.000 0.00 0.00 34.64 5.92
6219 6395 1.089920 ATTTAGCAGCCAAGTGAGCG 58.910 50.000 0.00 0.00 34.64 5.03
6220 6396 3.057315 TCAAATTTAGCAGCCAAGTGAGC 60.057 43.478 0.00 0.00 0.00 4.26
6221 6397 4.771590 TCAAATTTAGCAGCCAAGTGAG 57.228 40.909 0.00 0.00 0.00 3.51
6222 6398 5.528043 TTTCAAATTTAGCAGCCAAGTGA 57.472 34.783 0.00 0.00 0.00 3.41
6223 6399 5.984926 TCTTTTCAAATTTAGCAGCCAAGTG 59.015 36.000 0.00 0.00 0.00 3.16
6224 6400 6.160576 TCTTTTCAAATTTAGCAGCCAAGT 57.839 33.333 0.00 0.00 0.00 3.16
6225 6401 7.481275 TTTCTTTTCAAATTTAGCAGCCAAG 57.519 32.000 0.00 0.00 0.00 3.61
6226 6402 7.856145 TTTTCTTTTCAAATTTAGCAGCCAA 57.144 28.000 0.00 0.00 0.00 4.52
6227 6403 7.856145 TTTTTCTTTTCAAATTTAGCAGCCA 57.144 28.000 0.00 0.00 0.00 4.75
6228 6404 8.558700 TCATTTTTCTTTTCAAATTTAGCAGCC 58.441 29.630 0.00 0.00 0.00 4.85
6236 6412 9.902196 GCATCCAATCATTTTTCTTTTCAAATT 57.098 25.926 0.00 0.00 0.00 1.82
6237 6413 9.069082 TGCATCCAATCATTTTTCTTTTCAAAT 57.931 25.926 0.00 0.00 0.00 2.32
6238 6414 8.447924 TGCATCCAATCATTTTTCTTTTCAAA 57.552 26.923 0.00 0.00 0.00 2.69
6239 6415 8.624367 ATGCATCCAATCATTTTTCTTTTCAA 57.376 26.923 0.00 0.00 0.00 2.69
6240 6416 8.098286 AGATGCATCCAATCATTTTTCTTTTCA 58.902 29.630 23.06 0.00 0.00 2.69
6241 6417 8.488651 AGATGCATCCAATCATTTTTCTTTTC 57.511 30.769 23.06 0.00 0.00 2.29
6242 6418 8.726988 CAAGATGCATCCAATCATTTTTCTTTT 58.273 29.630 23.06 2.12 0.00 2.27
6243 6419 8.098286 TCAAGATGCATCCAATCATTTTTCTTT 58.902 29.630 23.06 2.78 0.00 2.52
6244 6420 7.617225 TCAAGATGCATCCAATCATTTTTCTT 58.383 30.769 23.06 3.81 0.00 2.52
6245 6421 7.177832 TCAAGATGCATCCAATCATTTTTCT 57.822 32.000 23.06 0.00 0.00 2.52
6246 6422 7.465513 GCTTCAAGATGCATCCAATCATTTTTC 60.466 37.037 23.06 0.00 0.00 2.29
6247 6423 6.315393 GCTTCAAGATGCATCCAATCATTTTT 59.685 34.615 23.06 4.69 0.00 1.94
6248 6424 5.815740 GCTTCAAGATGCATCCAATCATTTT 59.184 36.000 23.06 5.43 0.00 1.82
6249 6425 5.105106 TGCTTCAAGATGCATCCAATCATTT 60.105 36.000 23.06 6.18 36.70 2.32
6250 6426 4.404394 TGCTTCAAGATGCATCCAATCATT 59.596 37.500 23.06 6.93 36.70 2.57
6251 6427 3.958147 TGCTTCAAGATGCATCCAATCAT 59.042 39.130 23.06 0.04 36.70 2.45
6252 6428 3.358118 TGCTTCAAGATGCATCCAATCA 58.642 40.909 23.06 12.04 36.70 2.57
6253 6429 3.630769 TCTGCTTCAAGATGCATCCAATC 59.369 43.478 23.06 9.74 40.09 2.67
6254 6430 3.628008 TCTGCTTCAAGATGCATCCAAT 58.372 40.909 23.06 7.24 40.09 3.16
6255 6431 3.076079 TCTGCTTCAAGATGCATCCAA 57.924 42.857 23.06 12.31 40.09 3.53
6256 6432 2.793288 TCTGCTTCAAGATGCATCCA 57.207 45.000 23.06 11.49 40.09 3.41
6257 6433 2.358267 CCTTCTGCTTCAAGATGCATCC 59.642 50.000 23.06 7.23 40.09 3.51
6258 6434 2.223525 GCCTTCTGCTTCAAGATGCATC 60.224 50.000 19.37 19.37 40.09 3.91
6259 6435 1.749634 GCCTTCTGCTTCAAGATGCAT 59.250 47.619 0.00 0.00 40.09 3.96
6260 6436 1.171308 GCCTTCTGCTTCAAGATGCA 58.829 50.000 9.80 9.80 38.85 3.96
6261 6437 1.171308 TGCCTTCTGCTTCAAGATGC 58.829 50.000 0.00 1.38 42.00 3.91
6262 6438 2.031807 CGATGCCTTCTGCTTCAAGATG 59.968 50.000 0.00 0.00 42.68 2.90
6263 6439 2.286872 CGATGCCTTCTGCTTCAAGAT 58.713 47.619 0.00 0.00 42.68 2.40
6264 6440 1.676916 CCGATGCCTTCTGCTTCAAGA 60.677 52.381 0.00 0.00 42.68 3.02
6265 6441 0.731417 CCGATGCCTTCTGCTTCAAG 59.269 55.000 0.00 0.00 42.68 3.02
6266 6442 0.677731 CCCGATGCCTTCTGCTTCAA 60.678 55.000 0.00 0.00 42.68 2.69
6267 6443 1.078214 CCCGATGCCTTCTGCTTCA 60.078 57.895 0.00 0.00 42.68 3.02
6268 6444 1.821332 CCCCGATGCCTTCTGCTTC 60.821 63.158 0.00 0.00 42.00 3.86
6269 6445 2.273449 CCCCGATGCCTTCTGCTT 59.727 61.111 0.00 0.00 42.00 3.91
6270 6446 2.688666 TCCCCGATGCCTTCTGCT 60.689 61.111 0.00 0.00 42.00 4.24
6271 6447 2.514824 GTCCCCGATGCCTTCTGC 60.515 66.667 0.00 0.00 41.77 4.26
6272 6448 0.322456 TTTGTCCCCGATGCCTTCTG 60.322 55.000 0.00 0.00 0.00 3.02
6273 6449 0.625849 ATTTGTCCCCGATGCCTTCT 59.374 50.000 0.00 0.00 0.00 2.85
6274 6450 0.740737 CATTTGTCCCCGATGCCTTC 59.259 55.000 0.00 0.00 0.00 3.46
6275 6451 1.322538 GCATTTGTCCCCGATGCCTT 61.323 55.000 0.00 0.00 40.10 4.35
6276 6452 1.754234 GCATTTGTCCCCGATGCCT 60.754 57.895 0.00 0.00 40.10 4.75
6277 6453 1.603236 TTGCATTTGTCCCCGATGCC 61.603 55.000 5.24 0.00 44.15 4.40
6278 6454 0.461135 ATTGCATTTGTCCCCGATGC 59.539 50.000 0.00 0.88 44.81 3.91
6279 6455 3.243501 CCTTATTGCATTTGTCCCCGATG 60.244 47.826 0.00 0.00 0.00 3.84
6280 6456 2.958355 CCTTATTGCATTTGTCCCCGAT 59.042 45.455 0.00 0.00 0.00 4.18
6281 6457 2.025793 TCCTTATTGCATTTGTCCCCGA 60.026 45.455 0.00 0.00 0.00 5.14
6282 6458 2.374184 TCCTTATTGCATTTGTCCCCG 58.626 47.619 0.00 0.00 0.00 5.73
6283 6459 3.960102 TCATCCTTATTGCATTTGTCCCC 59.040 43.478 0.00 0.00 0.00 4.81
6284 6460 4.498009 CGTCATCCTTATTGCATTTGTCCC 60.498 45.833 0.00 0.00 0.00 4.46
6285 6461 4.601019 CGTCATCCTTATTGCATTTGTCC 58.399 43.478 0.00 0.00 0.00 4.02
6286 6462 4.037690 GCGTCATCCTTATTGCATTTGTC 58.962 43.478 0.00 0.00 0.00 3.18
6287 6463 3.696051 AGCGTCATCCTTATTGCATTTGT 59.304 39.130 0.00 0.00 0.00 2.83
6288 6464 4.201940 TGAGCGTCATCCTTATTGCATTTG 60.202 41.667 0.00 0.00 0.00 2.32
6289 6465 3.947196 TGAGCGTCATCCTTATTGCATTT 59.053 39.130 0.00 0.00 0.00 2.32
6290 6466 3.313526 GTGAGCGTCATCCTTATTGCATT 59.686 43.478 0.00 0.00 0.00 3.56
6291 6467 2.874701 GTGAGCGTCATCCTTATTGCAT 59.125 45.455 0.00 0.00 0.00 3.96
6292 6468 2.279741 GTGAGCGTCATCCTTATTGCA 58.720 47.619 0.00 0.00 0.00 4.08
6293 6469 1.599542 GGTGAGCGTCATCCTTATTGC 59.400 52.381 0.00 0.00 0.00 3.56
6294 6470 2.905075 TGGTGAGCGTCATCCTTATTG 58.095 47.619 0.00 0.00 0.00 1.90
6295 6471 3.733337 GATGGTGAGCGTCATCCTTATT 58.267 45.455 0.00 0.00 35.11 1.40
6296 6472 2.288457 CGATGGTGAGCGTCATCCTTAT 60.288 50.000 4.63 0.00 37.16 1.73
6297 6473 1.067060 CGATGGTGAGCGTCATCCTTA 59.933 52.381 4.63 0.00 37.16 2.69
6298 6474 0.179100 CGATGGTGAGCGTCATCCTT 60.179 55.000 4.63 1.94 37.16 3.36
6299 6475 1.037579 TCGATGGTGAGCGTCATCCT 61.038 55.000 4.63 0.00 37.16 3.24
6300 6476 0.032678 ATCGATGGTGAGCGTCATCC 59.967 55.000 0.00 3.48 37.16 3.51
6301 6477 1.000827 AGATCGATGGTGAGCGTCATC 60.001 52.381 0.54 6.46 37.12 2.92
6302 6478 1.035923 AGATCGATGGTGAGCGTCAT 58.964 50.000 0.54 0.00 31.28 3.06
6303 6479 0.101219 CAGATCGATGGTGAGCGTCA 59.899 55.000 0.54 0.00 31.28 4.35
6304 6480 0.596083 CCAGATCGATGGTGAGCGTC 60.596 60.000 0.54 0.00 35.47 5.19
6305 6481 1.439228 CCAGATCGATGGTGAGCGT 59.561 57.895 0.54 0.00 35.47 5.07
6306 6482 1.953138 GCCAGATCGATGGTGAGCG 60.953 63.158 0.54 0.00 42.75 5.03
6307 6483 0.250209 ATGCCAGATCGATGGTGAGC 60.250 55.000 0.54 6.74 42.75 4.26
6308 6484 1.343789 AGATGCCAGATCGATGGTGAG 59.656 52.381 0.54 0.00 42.75 3.51
6309 6485 1.069668 CAGATGCCAGATCGATGGTGA 59.930 52.381 0.54 0.00 42.75 4.02
6310 6486 1.509703 CAGATGCCAGATCGATGGTG 58.490 55.000 0.54 0.00 42.75 4.17
6311 6487 0.250209 GCAGATGCCAGATCGATGGT 60.250 55.000 0.54 0.00 42.75 3.55
6312 6488 0.250166 TGCAGATGCCAGATCGATGG 60.250 55.000 0.54 0.44 43.72 3.51
6313 6489 1.589803 TTGCAGATGCCAGATCGATG 58.410 50.000 0.54 0.00 41.18 3.84
6314 6490 2.563261 ATTGCAGATGCCAGATCGAT 57.437 45.000 0.00 0.00 41.18 3.59
6315 6491 3.070015 TCTTATTGCAGATGCCAGATCGA 59.930 43.478 1.72 0.00 41.18 3.59
6316 6492 3.396560 TCTTATTGCAGATGCCAGATCG 58.603 45.455 1.72 0.00 41.18 3.69
6317 6493 5.762825 TTTCTTATTGCAGATGCCAGATC 57.237 39.130 1.72 0.00 41.18 2.75
6318 6494 6.069331 AGATTTCTTATTGCAGATGCCAGAT 58.931 36.000 1.72 0.00 41.18 2.90
6319 6495 5.443283 AGATTTCTTATTGCAGATGCCAGA 58.557 37.500 1.72 0.00 41.18 3.86
6320 6496 5.769484 AGATTTCTTATTGCAGATGCCAG 57.231 39.130 1.72 0.00 41.18 4.85
6321 6497 5.240183 GCTAGATTTCTTATTGCAGATGCCA 59.760 40.000 1.72 0.00 41.18 4.92
6322 6498 5.240183 TGCTAGATTTCTTATTGCAGATGCC 59.760 40.000 1.72 0.00 41.18 4.40
6323 6499 6.309712 TGCTAGATTTCTTATTGCAGATGC 57.690 37.500 0.00 0.00 42.50 3.91
6324 6500 7.856398 CACTTGCTAGATTTCTTATTGCAGATG 59.144 37.037 1.04 0.00 0.00 2.90
6325 6501 7.468357 GCACTTGCTAGATTTCTTATTGCAGAT 60.468 37.037 1.04 0.00 38.21 2.90
6326 6502 6.183360 GCACTTGCTAGATTTCTTATTGCAGA 60.183 38.462 1.04 0.00 38.21 4.26
6327 6503 5.970023 GCACTTGCTAGATTTCTTATTGCAG 59.030 40.000 1.04 0.00 38.21 4.41
6328 6504 5.415389 TGCACTTGCTAGATTTCTTATTGCA 59.585 36.000 1.04 1.25 42.66 4.08
6329 6505 5.883661 TGCACTTGCTAGATTTCTTATTGC 58.116 37.500 1.04 0.00 42.66 3.56
6330 6506 8.186163 TCATTGCACTTGCTAGATTTCTTATTG 58.814 33.333 1.04 0.00 42.66 1.90
6331 6507 8.186821 GTCATTGCACTTGCTAGATTTCTTATT 58.813 33.333 1.04 0.00 42.66 1.40
6332 6508 7.337689 TGTCATTGCACTTGCTAGATTTCTTAT 59.662 33.333 1.04 0.00 42.66 1.73
6333 6509 6.654582 TGTCATTGCACTTGCTAGATTTCTTA 59.345 34.615 1.04 0.00 42.66 2.10
6334 6510 5.474532 TGTCATTGCACTTGCTAGATTTCTT 59.525 36.000 1.04 0.00 42.66 2.52
6335 6511 5.005740 TGTCATTGCACTTGCTAGATTTCT 58.994 37.500 1.04 0.00 42.66 2.52
6336 6512 5.300969 TGTCATTGCACTTGCTAGATTTC 57.699 39.130 1.04 0.00 42.66 2.17
6337 6513 5.474532 TCTTGTCATTGCACTTGCTAGATTT 59.525 36.000 1.04 0.00 42.66 2.17
6338 6514 5.005740 TCTTGTCATTGCACTTGCTAGATT 58.994 37.500 1.04 0.00 42.66 2.40
6339 6515 4.582869 TCTTGTCATTGCACTTGCTAGAT 58.417 39.130 1.04 0.00 42.66 1.98
6340 6516 3.999001 CTCTTGTCATTGCACTTGCTAGA 59.001 43.478 1.04 0.00 42.66 2.43
6341 6517 3.750130 ACTCTTGTCATTGCACTTGCTAG 59.250 43.478 2.33 0.00 42.66 3.42
6342 6518 3.499537 CACTCTTGTCATTGCACTTGCTA 59.500 43.478 2.33 0.00 42.66 3.49
6343 6519 2.292569 CACTCTTGTCATTGCACTTGCT 59.707 45.455 2.33 0.00 42.66 3.91
6344 6520 2.606308 CCACTCTTGTCATTGCACTTGC 60.606 50.000 0.00 0.00 42.50 4.01
6345 6521 2.620115 ACCACTCTTGTCATTGCACTTG 59.380 45.455 0.00 0.00 0.00 3.16
6346 6522 2.936202 ACCACTCTTGTCATTGCACTT 58.064 42.857 0.00 0.00 0.00 3.16
6347 6523 2.645838 ACCACTCTTGTCATTGCACT 57.354 45.000 0.00 0.00 0.00 4.40
6348 6524 5.065218 CCTATTACCACTCTTGTCATTGCAC 59.935 44.000 0.00 0.00 0.00 4.57
6349 6525 5.185454 CCTATTACCACTCTTGTCATTGCA 58.815 41.667 0.00 0.00 0.00 4.08
6350 6526 4.576463 CCCTATTACCACTCTTGTCATTGC 59.424 45.833 0.00 0.00 0.00 3.56
6351 6527 5.989477 TCCCTATTACCACTCTTGTCATTG 58.011 41.667 0.00 0.00 0.00 2.82
6352 6528 5.131142 CCTCCCTATTACCACTCTTGTCATT 59.869 44.000 0.00 0.00 0.00 2.57
6353 6529 4.656112 CCTCCCTATTACCACTCTTGTCAT 59.344 45.833 0.00 0.00 0.00 3.06
6354 6530 4.030913 CCTCCCTATTACCACTCTTGTCA 58.969 47.826 0.00 0.00 0.00 3.58
6355 6531 4.031611 ACCTCCCTATTACCACTCTTGTC 58.968 47.826 0.00 0.00 0.00 3.18
6356 6532 3.775316 CACCTCCCTATTACCACTCTTGT 59.225 47.826 0.00 0.00 0.00 3.16
6357 6533 3.775316 ACACCTCCCTATTACCACTCTTG 59.225 47.826 0.00 0.00 0.00 3.02
6358 6534 4.076175 ACACCTCCCTATTACCACTCTT 57.924 45.455 0.00 0.00 0.00 2.85
6359 6535 3.778622 ACACCTCCCTATTACCACTCT 57.221 47.619 0.00 0.00 0.00 3.24
6360 6536 3.896272 CCTACACCTCCCTATTACCACTC 59.104 52.174 0.00 0.00 0.00 3.51
6361 6537 3.274153 ACCTACACCTCCCTATTACCACT 59.726 47.826 0.00 0.00 0.00 4.00
6362 6538 3.387050 CACCTACACCTCCCTATTACCAC 59.613 52.174 0.00 0.00 0.00 4.16
6363 6539 3.649843 CACCTACACCTCCCTATTACCA 58.350 50.000 0.00 0.00 0.00 3.25
6364 6540 2.367894 GCACCTACACCTCCCTATTACC 59.632 54.545 0.00 0.00 0.00 2.85
6365 6541 3.306613 AGCACCTACACCTCCCTATTAC 58.693 50.000 0.00 0.00 0.00 1.89
6366 6542 3.700863 AGCACCTACACCTCCCTATTA 57.299 47.619 0.00 0.00 0.00 0.98
6367 6543 2.570386 AGCACCTACACCTCCCTATT 57.430 50.000 0.00 0.00 0.00 1.73
6368 6544 2.399580 GAAGCACCTACACCTCCCTAT 58.600 52.381 0.00 0.00 0.00 2.57
6369 6545 1.621622 GGAAGCACCTACACCTCCCTA 60.622 57.143 0.00 0.00 35.41 3.53
6370 6546 0.910088 GGAAGCACCTACACCTCCCT 60.910 60.000 0.00 0.00 35.41 4.20
6371 6547 1.198759 TGGAAGCACCTACACCTCCC 61.199 60.000 1.91 0.00 39.86 4.30
6372 6548 0.912486 ATGGAAGCACCTACACCTCC 59.088 55.000 1.91 0.00 39.86 4.30
6373 6549 1.555075 TCATGGAAGCACCTACACCTC 59.445 52.381 0.00 0.00 39.86 3.85
6374 6550 1.656587 TCATGGAAGCACCTACACCT 58.343 50.000 0.00 0.00 39.86 4.00
6375 6551 2.717639 ATCATGGAAGCACCTACACC 57.282 50.000 0.00 0.00 39.86 4.16
6376 6552 4.137116 TGTATCATGGAAGCACCTACAC 57.863 45.455 0.00 0.00 39.86 2.90
6377 6553 4.835284 TTGTATCATGGAAGCACCTACA 57.165 40.909 0.00 0.15 39.86 2.74
6378 6554 5.590259 ACAATTGTATCATGGAAGCACCTAC 59.410 40.000 9.97 0.00 39.86 3.18
6379 6555 5.754782 ACAATTGTATCATGGAAGCACCTA 58.245 37.500 9.97 0.00 39.86 3.08
6380 6556 4.603131 ACAATTGTATCATGGAAGCACCT 58.397 39.130 9.97 0.00 39.86 4.00
6381 6557 4.641989 AGACAATTGTATCATGGAAGCACC 59.358 41.667 11.95 0.00 39.54 5.01
6455 6631 3.804036 TCGACCAACAACAACTTGAGAT 58.196 40.909 0.00 0.00 0.00 2.75
6470 6646 2.869101 TCAATGAAACCCATCGACCA 57.131 45.000 0.00 0.00 33.53 4.02
6489 6665 2.356125 GCCACAGACACTTGGGTCATAT 60.356 50.000 5.77 0.00 40.29 1.78
6495 6671 2.263741 GCAGCCACAGACACTTGGG 61.264 63.158 0.00 0.00 33.01 4.12
6507 6683 3.011818 CAACATAGACTCAATGCAGCCA 58.988 45.455 0.00 0.00 0.00 4.75
6522 6698 2.695666 CCCAACAAACACACCCAACATA 59.304 45.455 0.00 0.00 0.00 2.29
6523 6699 1.484240 CCCAACAAACACACCCAACAT 59.516 47.619 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.