Multiple sequence alignment - TraesCS6D01G237200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G237200 chr6D 100.000 5559 0 0 1 5559 335378477 335372919 0.000000e+00 10266.0
1 TraesCS6D01G237200 chr6D 77.624 505 76 25 59 545 395535155 395534670 7.100000e-69 272.0
2 TraesCS6D01G237200 chr6D 88.235 85 3 3 4562 4645 211443945 211444023 1.650000e-15 95.3
3 TraesCS6D01G237200 chr6A 93.823 2930 116 27 2221 5115 475000848 474997949 0.000000e+00 4348.0
4 TraesCS6D01G237200 chr6A 94.783 1246 26 10 951 2171 475002084 475000853 0.000000e+00 1905.0
5 TraesCS6D01G237200 chr6A 87.900 438 35 5 531 955 475002925 475002493 2.990000e-137 499.0
6 TraesCS6D01G237200 chr6A 89.540 239 11 9 5101 5331 474997935 474997703 1.960000e-74 291.0
7 TraesCS6D01G237200 chr6A 82.812 64 10 1 528 591 161214644 161214706 7.780000e-04 56.5
8 TraesCS6D01G237200 chr6B 93.021 2923 126 37 2333 5227 485292573 485295445 0.000000e+00 4196.0
9 TraesCS6D01G237200 chr6B 95.451 1253 22 9 890 2119 485291047 485292287 0.000000e+00 1965.0
10 TraesCS6D01G237200 chr6B 90.909 198 6 3 708 893 485290516 485290713 7.150000e-64 255.0
11 TraesCS6D01G237200 chr6B 93.548 93 5 1 2245 2336 485292284 485292376 2.700000e-28 137.0
12 TraesCS6D01G237200 chr2B 89.713 418 42 1 1430 1847 599595464 599595880 2.950000e-147 532.0
13 TraesCS6D01G237200 chr2B 81.006 616 94 15 2699 3308 599596486 599597084 8.430000e-128 468.0
14 TraesCS6D01G237200 chr2B 78.627 510 79 19 11 500 550940532 550940033 1.500000e-80 311.0
15 TraesCS6D01G237200 chr2A 86.735 490 52 8 1358 1847 653677871 653678347 2.950000e-147 532.0
16 TraesCS6D01G237200 chr2A 80.357 616 107 9 2699 3308 653679020 653679627 6.560000e-124 455.0
17 TraesCS6D01G237200 chr2A 86.207 87 7 3 4562 4644 385979345 385979260 7.670000e-14 89.8
18 TraesCS6D01G237200 chr2D 90.727 399 36 1 1449 1847 509941707 509942104 1.060000e-146 531.0
19 TraesCS6D01G237200 chr2D 81.068 618 92 20 2699 3308 509942710 509943310 2.340000e-128 470.0
20 TraesCS6D01G237200 chr2D 79.688 576 93 12 3 561 480588275 480588843 1.450000e-105 394.0
21 TraesCS6D01G237200 chr2D 76.211 454 86 16 4 441 351049109 351048662 2.610000e-53 220.0
22 TraesCS6D01G237200 chr2D 82.432 148 20 6 1 144 557211205 557211350 2.100000e-24 124.0
23 TraesCS6D01G237200 chr2D 85.882 85 8 3 4562 4643 425742569 425742652 2.760000e-13 87.9
24 TraesCS6D01G237200 chr2D 84.058 69 11 0 541 609 277075959 277075891 3.590000e-07 67.6
25 TraesCS6D01G237200 chr5D 79.041 563 87 21 4 546 550289608 550290159 1.900000e-94 357.0
26 TraesCS6D01G237200 chr5D 77.005 561 98 22 4 553 37646415 37646955 5.450000e-75 292.0
27 TraesCS6D01G237200 chr5D 76.812 207 48 0 2704 2910 197152199 197151993 3.520000e-22 117.0
28 TraesCS6D01G237200 chr3B 77.526 574 97 21 1 553 418749708 418750270 3.230000e-82 316.0
29 TraesCS6D01G237200 chr3B 79.188 197 36 4 216 408 58857375 58857570 1.260000e-26 132.0
30 TraesCS6D01G237200 chr3B 82.639 144 18 4 419 559 598970462 598970323 2.720000e-23 121.0
31 TraesCS6D01G237200 chr7A 78.185 518 83 21 54 552 493091629 493092135 2.520000e-78 303.0
32 TraesCS6D01G237200 chr7A 82.500 80 14 0 527 606 100194632 100194711 2.780000e-08 71.3
33 TraesCS6D01G237200 chr3D 77.265 563 95 23 3 545 302225809 302225260 3.260000e-77 300.0
34 TraesCS6D01G237200 chr3D 71.577 577 107 33 37 564 484733260 484733828 2.740000e-18 104.0
35 TraesCS6D01G237200 chr3D 87.500 88 8 2 4562 4646 45931417 45931330 1.270000e-16 99.0
36 TraesCS6D01G237200 chr3D 81.818 88 14 2 541 627 304584023 304584109 7.720000e-09 73.1
37 TraesCS6D01G237200 chr4A 77.451 510 81 22 11 500 121493488 121493983 1.970000e-69 274.0
38 TraesCS6D01G237200 chr4A 77.551 441 72 18 12 435 641357226 641357656 2.000000e-59 241.0
39 TraesCS6D01G237200 chr4A 87.500 80 6 3 4575 4651 703430586 703430508 7.670000e-14 89.8
40 TraesCS6D01G237200 chr5A 75.812 554 95 27 13 545 309772499 309771964 1.550000e-60 244.0
41 TraesCS6D01G237200 chr5A 73.621 580 94 36 13 549 69383715 69384278 9.580000e-38 169.0
42 TraesCS6D01G237200 chr5A 78.537 205 42 2 2704 2907 227923959 227924162 3.490000e-27 134.0
43 TraesCS6D01G237200 chr5B 76.629 445 68 17 146 564 660356515 660356949 4.360000e-51 213.0
44 TraesCS6D01G237200 chr4B 74.297 498 107 15 2698 3186 155379367 155378882 2.040000e-44 191.0
45 TraesCS6D01G237200 chr4B 77.882 321 60 8 238 552 135002670 135002985 7.350000e-44 189.0
46 TraesCS6D01G237200 chr7B 79.636 275 38 13 293 553 193528770 193529040 1.230000e-41 182.0
47 TraesCS6D01G237200 chr4D 73.904 502 108 18 2698 3186 168197114 168197605 4.420000e-41 180.0
48 TraesCS6D01G237200 chr3A 79.130 230 43 3 216 440 474844146 474844375 2.680000e-33 154.0
49 TraesCS6D01G237200 chr7D 83.333 138 15 7 1 133 538912485 538912351 2.720000e-23 121.0
50 TraesCS6D01G237200 chr7D 84.416 77 9 3 532 606 97760325 97760400 7.720000e-09 73.1
51 TraesCS6D01G237200 chr1D 87.209 86 8 2 4562 4644 279101376 279101461 1.650000e-15 95.3
52 TraesCS6D01G237200 chr1D 85.882 85 7 4 4562 4643 149649711 149649793 9.920000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G237200 chr6D 335372919 335378477 5558 True 10266.00 10266 100.00000 1 5559 1 chr6D.!!$R1 5558
1 TraesCS6D01G237200 chr6A 474997703 475002925 5222 True 1760.75 4348 91.51150 531 5331 4 chr6A.!!$R1 4800
2 TraesCS6D01G237200 chr6B 485290516 485295445 4929 False 1638.25 4196 93.23225 708 5227 4 chr6B.!!$F1 4519
3 TraesCS6D01G237200 chr2B 599595464 599597084 1620 False 500.00 532 85.35950 1430 3308 2 chr2B.!!$F1 1878
4 TraesCS6D01G237200 chr2A 653677871 653679627 1756 False 493.50 532 83.54600 1358 3308 2 chr2A.!!$F1 1950
5 TraesCS6D01G237200 chr2D 509941707 509943310 1603 False 500.50 531 85.89750 1449 3308 2 chr2D.!!$F4 1859
6 TraesCS6D01G237200 chr2D 480588275 480588843 568 False 394.00 394 79.68800 3 561 1 chr2D.!!$F2 558
7 TraesCS6D01G237200 chr5D 550289608 550290159 551 False 357.00 357 79.04100 4 546 1 chr5D.!!$F2 542
8 TraesCS6D01G237200 chr5D 37646415 37646955 540 False 292.00 292 77.00500 4 553 1 chr5D.!!$F1 549
9 TraesCS6D01G237200 chr3B 418749708 418750270 562 False 316.00 316 77.52600 1 553 1 chr3B.!!$F2 552
10 TraesCS6D01G237200 chr7A 493091629 493092135 506 False 303.00 303 78.18500 54 552 1 chr7A.!!$F2 498
11 TraesCS6D01G237200 chr3D 302225260 302225809 549 True 300.00 300 77.26500 3 545 1 chr3D.!!$R2 542
12 TraesCS6D01G237200 chr5A 309771964 309772499 535 True 244.00 244 75.81200 13 545 1 chr5A.!!$R1 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 230 0.027063 ACAAACTTTCGTGCGGTTCG 59.973 50.000 0.00 0.00 0.00 3.95 F
685 718 0.038983 ATTGGCGGTTTAACGTTGGC 60.039 50.000 11.99 6.62 35.98 4.52 F
686 719 1.381928 TTGGCGGTTTAACGTTGGCA 61.382 50.000 11.99 9.44 35.98 4.92 F
1913 2783 1.398390 GAACGGATTGCTTGCTCGAAT 59.602 47.619 0.00 0.00 0.00 3.34 F
2960 4228 0.039618 ACGCAATTCCATTCCACCCT 59.960 50.000 0.00 0.00 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1896 2766 0.305922 GGATTCGAGCAAGCAATCCG 59.694 55.0 6.81 0.04 37.04 4.18 R
2211 3104 0.108585 GTGCTGTTTCAGTGGAGGGA 59.891 55.0 0.00 0.00 33.43 4.20 R
2213 3106 0.249868 TCGTGCTGTTTCAGTGGAGG 60.250 55.0 0.00 0.00 33.43 4.30 R
3834 5129 0.606401 CACTGTGGTAGGGCCTTGTG 60.606 60.0 13.45 8.11 38.35 3.33 R
4951 6261 0.552363 ATGTGGGCATGCAGTATGGA 59.448 50.0 21.36 0.00 44.23 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 69 1.554042 CGGACGAACCACAACTTCGG 61.554 60.000 5.62 0.00 43.90 4.30
70 73 1.433053 CGAACCACAACTTCGGTGCA 61.433 55.000 0.00 0.00 37.46 4.57
91 94 2.289375 GCAGCGTGCGATCTACGAG 61.289 63.158 19.42 12.90 43.82 4.18
92 95 2.024871 AGCGTGCGATCTACGAGC 59.975 61.111 19.42 3.41 43.82 5.03
100 103 2.442272 ATCTACGAGCCTGCCCGT 60.442 61.111 3.76 3.76 42.15 5.28
160 174 1.805945 GCATCACGGACGAGGACAC 60.806 63.158 0.00 0.00 0.00 3.67
162 176 1.605451 ATCACGGACGAGGACACCA 60.605 57.895 0.00 0.00 0.00 4.17
195 217 3.502990 TACGCGCCACCGACAAACT 62.503 57.895 5.73 0.00 36.29 2.66
196 218 2.974935 TACGCGCCACCGACAAACTT 62.975 55.000 5.73 0.00 36.29 2.66
200 222 1.768112 CGCCACCGACAAACTTTCGT 61.768 55.000 0.00 0.00 34.56 3.85
208 230 0.027063 ACAAACTTTCGTGCGGTTCG 59.973 50.000 0.00 0.00 0.00 3.95
209 231 0.656205 CAAACTTTCGTGCGGTTCGG 60.656 55.000 0.00 0.00 0.00 4.30
210 232 1.091197 AAACTTTCGTGCGGTTCGGT 61.091 50.000 0.00 0.00 0.00 4.69
211 233 0.249405 AACTTTCGTGCGGTTCGGTA 60.249 50.000 0.00 0.00 0.00 4.02
212 234 0.665369 ACTTTCGTGCGGTTCGGTAG 60.665 55.000 0.00 0.00 0.00 3.18
213 235 1.349259 CTTTCGTGCGGTTCGGTAGG 61.349 60.000 0.00 0.00 0.00 3.18
291 314 1.021968 GACGGACAAGGCACAAACTT 58.978 50.000 0.00 0.00 0.00 2.66
335 360 2.116125 GCAGGGGCCTTGTGTCTT 59.884 61.111 17.72 0.00 0.00 3.01
354 379 2.118732 TGTGGGCCAGTCCGTCTA 59.881 61.111 6.40 0.00 34.94 2.59
357 382 2.363925 GGGCCAGTCCGTCTACCT 60.364 66.667 4.39 0.00 34.94 3.08
359 384 0.685458 GGGCCAGTCCGTCTACCTTA 60.685 60.000 4.39 0.00 34.94 2.69
369 394 6.203338 CAGTCCGTCTACCTTATTCTACTCTC 59.797 46.154 0.00 0.00 0.00 3.20
387 412 4.735132 CCTCGCCGGAGAACGCAA 62.735 66.667 9.83 0.00 43.27 4.85
393 418 1.298859 GCCGGAGAACGCAACTTCAT 61.299 55.000 5.05 0.00 42.52 2.57
417 443 4.318332 TCATCGGTCTTATCATTGATGCC 58.682 43.478 9.46 5.60 34.64 4.40
486 515 2.289506 CGCCTTAGGATAGGTTTAGGGC 60.290 54.545 0.69 0.00 37.63 5.19
549 582 5.096954 TGAAAATTCGTCGTGTTTGCATA 57.903 34.783 0.00 0.00 0.00 3.14
565 598 4.868450 TGCATAAATTTCGTCCGGTTAG 57.132 40.909 0.00 0.00 0.00 2.34
568 601 5.181622 TGCATAAATTTCGTCCGGTTAGTTT 59.818 36.000 0.00 0.00 0.00 2.66
598 631 3.745332 TTGAAATGTATGCTGACAGCG 57.255 42.857 22.00 0.00 46.26 5.18
602 635 1.372582 ATGTATGCTGACAGCGTTGG 58.627 50.000 26.38 0.00 46.26 3.77
608 641 0.950555 GCTGACAGCGTTGGATGACA 60.951 55.000 12.53 0.00 33.51 3.58
615 648 1.067283 AGCGTTGGATGACAGTCTCAG 60.067 52.381 1.31 0.00 30.20 3.35
622 655 3.834231 TGGATGACAGTCTCAGACATCAA 59.166 43.478 14.05 0.00 39.03 2.57
624 657 4.809958 GGATGACAGTCTCAGACATCAATG 59.190 45.833 14.05 3.09 39.03 2.82
642 675 1.004918 GTCGGTGAACTGGTCCCTG 60.005 63.158 0.00 0.00 0.00 4.45
643 676 1.458777 TCGGTGAACTGGTCCCTGT 60.459 57.895 0.00 0.00 0.00 4.00
645 678 0.682852 CGGTGAACTGGTCCCTGTTA 59.317 55.000 8.38 0.00 38.03 2.41
646 679 1.337823 CGGTGAACTGGTCCCTGTTAG 60.338 57.143 8.38 0.00 38.03 2.34
647 680 1.610886 GGTGAACTGGTCCCTGTTAGC 60.611 57.143 8.38 5.15 38.03 3.09
648 681 0.320374 TGAACTGGTCCCTGTTAGCG 59.680 55.000 8.38 0.00 38.03 4.26
650 683 0.834687 AACTGGTCCCTGTTAGCGGA 60.835 55.000 6.79 0.00 36.56 5.54
651 684 1.218316 CTGGTCCCTGTTAGCGGAC 59.782 63.158 0.00 0.00 46.63 4.79
653 686 4.913126 GTCCCTGTTAGCGGACAG 57.087 61.111 13.55 13.55 46.59 3.51
673 706 2.489751 GCGGGAGAAAATTGGCGG 59.510 61.111 0.00 0.00 0.00 6.13
674 707 2.340328 GCGGGAGAAAATTGGCGGT 61.340 57.895 0.00 0.00 0.00 5.68
683 716 4.045783 AGAAAATTGGCGGTTTAACGTTG 58.954 39.130 11.99 0.00 35.98 4.10
685 718 0.038983 ATTGGCGGTTTAACGTTGGC 60.039 50.000 11.99 6.62 35.98 4.52
686 719 1.381928 TTGGCGGTTTAACGTTGGCA 61.382 50.000 11.99 9.44 35.98 4.92
922 1304 5.476614 GGGTGACTTTTACTCGTAATCACT 58.523 41.667 15.80 0.00 35.00 3.41
1181 1984 2.124942 CGCTCCTTCTTCCTGCCC 60.125 66.667 0.00 0.00 0.00 5.36
1342 2145 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
1343 2146 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
1344 2147 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
1345 2148 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
1346 2149 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
1347 2150 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
1896 2766 8.773404 TCTGATTGCTTAACTAGGTTTAGAAC 57.227 34.615 0.00 0.00 0.00 3.01
1913 2783 1.398390 GAACGGATTGCTTGCTCGAAT 59.602 47.619 0.00 0.00 0.00 3.34
2032 2911 7.117812 GTCAGATACTCTCAGATAGTAGCAGTC 59.882 44.444 12.36 1.12 38.11 3.51
2082 2975 8.999895 ACATGGGGTGAATTAATTAGTAGTACT 58.000 33.333 8.14 8.14 0.00 2.73
2129 3022 6.790282 TCAATATTTGAATCGGCGATTTTCA 58.210 32.000 32.88 25.60 36.59 2.69
2131 3024 2.911819 TTGAATCGGCGATTTTCACC 57.088 45.000 32.88 20.99 31.89 4.02
2132 3025 2.107950 TGAATCGGCGATTTTCACCT 57.892 45.000 32.88 12.11 31.89 4.00
2133 3026 3.254470 TGAATCGGCGATTTTCACCTA 57.746 42.857 32.88 12.90 31.89 3.08
2134 3027 3.601435 TGAATCGGCGATTTTCACCTAA 58.399 40.909 32.88 11.15 31.89 2.69
2136 3029 4.094294 TGAATCGGCGATTTTCACCTAAAG 59.906 41.667 32.88 0.00 31.89 1.85
2140 3033 2.519963 GCGATTTTCACCTAAAGCTGC 58.480 47.619 0.00 0.00 0.00 5.25
2171 3064 8.928270 ATGCAACTATGAACTACAACTAGTAC 57.072 34.615 0.00 0.00 32.46 2.73
2172 3065 8.118976 TGCAACTATGAACTACAACTAGTACT 57.881 34.615 0.00 0.00 32.46 2.73
2174 3067 9.719279 GCAACTATGAACTACAACTAGTACTAG 57.281 37.037 25.30 25.30 39.04 2.57
2184 3077 9.393512 ACTACAACTAGTACTAGTACAAGATGG 57.606 37.037 30.89 17.84 44.96 3.51
2185 3078 9.393512 CTACAACTAGTACTAGTACAAGATGGT 57.606 37.037 30.89 21.73 44.96 3.55
2187 3080 9.745018 ACAACTAGTACTAGTACAAGATGGTAA 57.255 33.333 30.89 7.16 44.96 2.85
2265 3158 1.586422 TCTGCTTGTCACTTGACTGC 58.414 50.000 10.63 13.74 44.99 4.40
2267 3160 1.263484 CTGCTTGTCACTTGACTGCTG 59.737 52.381 20.27 17.47 44.99 4.41
2326 3220 1.283793 CTTTTCAGCTGGTGCCACG 59.716 57.895 15.13 0.00 40.80 4.94
2447 3541 8.075574 TGTCGTCTATCTTTTCAGTAACGTTTA 58.924 33.333 5.91 0.00 0.00 2.01
2461 3585 7.224557 TCAGTAACGTTTACAGGGTAACTTTTC 59.775 37.037 5.91 0.00 0.00 2.29
2495 3619 0.604243 TACCGCCTTCACGTGCATTT 60.604 50.000 11.67 0.00 0.00 2.32
2520 3644 1.967319 TCCGCATAGGGCTGAATTTC 58.033 50.000 0.00 0.00 41.67 2.17
2564 3688 1.688311 CCGACCTCCTATCTGAACCCA 60.688 57.143 0.00 0.00 0.00 4.51
2664 3800 0.813184 GGCACGTAGTAGTGGTAGCA 59.187 55.000 0.00 0.00 41.61 3.49
2667 3803 3.518590 GCACGTAGTAGTGGTAGCATTT 58.481 45.455 0.00 0.00 41.61 2.32
2669 3805 4.677250 GCACGTAGTAGTGGTAGCATTTCT 60.677 45.833 0.00 0.00 41.61 2.52
2694 3844 2.432456 TGATGCGTCGTGAGTGGC 60.432 61.111 0.58 0.00 0.00 5.01
2855 4121 2.203877 AACCGCCTCACCTACCCA 60.204 61.111 0.00 0.00 0.00 4.51
2938 4206 0.543749 CCCACCTCATCTCTTCACCC 59.456 60.000 0.00 0.00 0.00 4.61
2960 4228 0.039618 ACGCAATTCCATTCCACCCT 59.960 50.000 0.00 0.00 0.00 4.34
2961 4229 1.283613 ACGCAATTCCATTCCACCCTA 59.716 47.619 0.00 0.00 0.00 3.53
2963 4231 2.683742 CGCAATTCCATTCCACCCTAGT 60.684 50.000 0.00 0.00 0.00 2.57
2964 4232 2.952310 GCAATTCCATTCCACCCTAGTC 59.048 50.000 0.00 0.00 0.00 2.59
2965 4233 3.624707 GCAATTCCATTCCACCCTAGTCA 60.625 47.826 0.00 0.00 0.00 3.41
2966 4234 3.933861 ATTCCATTCCACCCTAGTCAC 57.066 47.619 0.00 0.00 0.00 3.67
2976 4244 2.968574 CACCCTAGTCACTCAGGCATAT 59.031 50.000 0.00 0.00 0.00 1.78
2980 4248 5.952947 ACCCTAGTCACTCAGGCATATATAC 59.047 44.000 0.00 0.00 0.00 1.47
2983 4251 6.434340 CCTAGTCACTCAGGCATATATACACA 59.566 42.308 0.00 0.00 0.00 3.72
2985 4253 6.695429 AGTCACTCAGGCATATATACACATG 58.305 40.000 0.00 0.00 0.00 3.21
3314 4598 3.433274 CGACGCAGCATGGTAATTATCAT 59.567 43.478 5.34 5.34 35.86 2.45
3317 4601 4.393062 ACGCAGCATGGTAATTATCATAGC 59.607 41.667 10.89 15.29 35.86 2.97
3318 4602 4.392754 CGCAGCATGGTAATTATCATAGCA 59.607 41.667 23.31 7.45 35.86 3.49
3319 4603 5.634896 GCAGCATGGTAATTATCATAGCAC 58.365 41.667 23.31 15.97 33.99 4.40
3320 4604 5.392380 GCAGCATGGTAATTATCATAGCACC 60.392 44.000 23.31 15.01 33.99 5.01
3321 4605 5.706833 CAGCATGGTAATTATCATAGCACCA 59.293 40.000 23.31 12.93 40.15 4.17
3322 4606 5.707298 AGCATGGTAATTATCATAGCACCAC 59.293 40.000 23.31 4.86 38.78 4.16
3323 4607 5.473162 GCATGGTAATTATCATAGCACCACA 59.527 40.000 19.57 0.00 38.78 4.17
3324 4608 6.151648 GCATGGTAATTATCATAGCACCACAT 59.848 38.462 19.57 0.00 38.78 3.21
3325 4609 7.627088 GCATGGTAATTATCATAGCACCACATC 60.627 40.741 19.57 2.23 38.78 3.06
3348 4635 4.378770 CCGAGTCATCAACATTTTGGTCAG 60.379 45.833 0.00 0.00 33.06 3.51
3400 4695 2.299013 TGCTGTAATTGACCTCTCACGT 59.701 45.455 0.00 0.00 0.00 4.49
3820 5115 1.982395 TCCTCTACCACAGGGCACG 60.982 63.158 0.00 0.00 37.90 5.34
3825 5120 0.949105 CTACCACAGGGCACGTCAAC 60.949 60.000 0.00 0.00 37.90 3.18
3896 5192 4.337060 TGTCGGCGTCGTGGTCTG 62.337 66.667 10.18 0.00 37.69 3.51
4013 5313 3.382227 TCGGTGTTCACTCTGTACAAGAA 59.618 43.478 10.71 4.46 33.37 2.52
4088 5388 1.001406 CAGTGTTCACCCTCTCTGACC 59.999 57.143 0.00 0.00 0.00 4.02
4426 5733 2.038952 TGTTGTAGCTCCATGAACTGCT 59.961 45.455 0.00 0.55 39.30 4.24
4529 5836 4.091424 GTCACTTGATCGCTAAATTGCAC 58.909 43.478 0.00 0.00 0.00 4.57
4530 5837 3.750652 TCACTTGATCGCTAAATTGCACA 59.249 39.130 0.00 0.00 0.00 4.57
4573 5880 1.629043 TGCGAGTTACTCCCTCTGTT 58.371 50.000 6.80 0.00 0.00 3.16
4637 5945 8.496707 AAAACGTCTTATATTTTGATACGGGT 57.503 30.769 0.00 0.00 33.44 5.28
4663 5971 7.067008 TGAGTATTTAAAATCCAGCTTGGCTAC 59.933 37.037 0.00 0.00 36.40 3.58
4682 5990 5.107182 GGCTACGTCTTCAGAAAAGTTAACC 60.107 44.000 0.88 0.00 0.00 2.85
4695 6003 2.423577 AGTTAACCGATGAGCAACACC 58.576 47.619 0.88 0.00 0.00 4.16
4701 6009 1.934589 CGATGAGCAACACCGGATTA 58.065 50.000 9.46 0.00 30.84 1.75
4718 6026 7.390440 CACCGGATTAAGGATTTATTCATAGCA 59.610 37.037 9.46 0.00 0.00 3.49
4722 6030 8.951243 GGATTAAGGATTTATTCATAGCAGACC 58.049 37.037 0.00 0.00 0.00 3.85
4925 6235 4.442332 GGAGGCCTCTCTAAAGTCTAAAGC 60.442 50.000 31.36 5.75 39.86 3.51
4943 6253 4.739046 AAGCGTCTGATCTGAAACTTTG 57.261 40.909 3.59 0.00 0.00 2.77
4951 6261 3.896888 TGATCTGAAACTTTGCCATTGGT 59.103 39.130 4.26 0.00 0.00 3.67
4994 6304 0.611062 TGGACAGTACGGAGGAGTGG 60.611 60.000 0.00 0.00 0.00 4.00
5099 6409 1.923227 GACTGCTTTTACGGCCTGGC 61.923 60.000 11.05 11.05 0.00 4.85
5172 6511 1.073763 TGAGTAGGCTGGCATGTTGTT 59.926 47.619 3.38 0.00 0.00 2.83
5173 6512 1.470098 GAGTAGGCTGGCATGTTGTTG 59.530 52.381 3.38 0.00 0.00 3.33
5174 6513 0.109132 GTAGGCTGGCATGTTGTTGC 60.109 55.000 3.38 0.00 42.01 4.17
5215 6554 4.002316 CGGCCCATTTTGAATGTGAAAAT 58.998 39.130 0.00 0.00 34.10 1.82
5236 6575 4.314740 TCTTCACATTTTGAAAACCGGG 57.685 40.909 6.32 0.00 43.90 5.73
5241 6580 4.827835 TCACATTTTGAAAACCGGGTGATA 59.172 37.500 6.32 0.00 0.00 2.15
5242 6581 5.048364 TCACATTTTGAAAACCGGGTGATAG 60.048 40.000 6.32 0.00 0.00 2.08
5244 6583 2.500392 TTGAAAACCGGGTGATAGGG 57.500 50.000 6.32 0.00 0.00 3.53
5245 6584 0.034863 TGAAAACCGGGTGATAGGGC 60.035 55.000 6.32 0.00 0.00 5.19
5246 6585 0.034863 GAAAACCGGGTGATAGGGCA 60.035 55.000 6.32 0.00 0.00 5.36
5248 6587 1.921869 AAACCGGGTGATAGGGCAGG 61.922 60.000 6.32 0.00 0.00 4.85
5249 6588 2.768344 CCGGGTGATAGGGCAGGT 60.768 66.667 0.00 0.00 0.00 4.00
5257 6603 1.929494 TGATAGGGCAGGTGGGATTTT 59.071 47.619 0.00 0.00 0.00 1.82
5259 6605 2.525105 TAGGGCAGGTGGGATTTTTC 57.475 50.000 0.00 0.00 0.00 2.29
5260 6606 0.786435 AGGGCAGGTGGGATTTTTCT 59.214 50.000 0.00 0.00 0.00 2.52
5264 6610 2.289010 GGCAGGTGGGATTTTTCTTGTG 60.289 50.000 0.00 0.00 0.00 3.33
5290 6636 6.321717 CGGCAAGAAGAAAAGTATTTGCATA 58.678 36.000 8.93 0.00 41.84 3.14
5291 6637 6.251376 CGGCAAGAAGAAAAGTATTTGCATAC 59.749 38.462 8.93 0.00 41.84 2.39
5318 6664 6.610075 AAAAATCCACCTGCATAATGACTT 57.390 33.333 0.00 0.00 0.00 3.01
5326 6672 3.812053 CCTGCATAATGACTTAGTGGCTC 59.188 47.826 0.00 0.00 0.00 4.70
5331 6677 2.472695 ATGACTTAGTGGCTCGCAAA 57.527 45.000 0.00 0.00 0.00 3.68
5332 6678 2.248280 TGACTTAGTGGCTCGCAAAA 57.752 45.000 0.00 0.00 0.00 2.44
5333 6679 2.778299 TGACTTAGTGGCTCGCAAAAT 58.222 42.857 0.00 0.00 0.00 1.82
5334 6680 2.483877 TGACTTAGTGGCTCGCAAAATG 59.516 45.455 0.00 0.00 0.00 2.32
5335 6681 1.200020 ACTTAGTGGCTCGCAAAATGC 59.800 47.619 0.00 0.00 40.69 3.56
5336 6682 1.470098 CTTAGTGGCTCGCAAAATGCT 59.530 47.619 0.43 0.00 42.25 3.79
5337 6683 1.533625 TAGTGGCTCGCAAAATGCTT 58.466 45.000 0.43 0.00 42.25 3.91
5338 6684 1.533625 AGTGGCTCGCAAAATGCTTA 58.466 45.000 0.43 0.00 42.25 3.09
5339 6685 2.094675 AGTGGCTCGCAAAATGCTTAT 58.905 42.857 0.43 0.00 42.25 1.73
5340 6686 2.493278 AGTGGCTCGCAAAATGCTTATT 59.507 40.909 0.43 0.00 42.25 1.40
5341 6687 3.056607 AGTGGCTCGCAAAATGCTTATTT 60.057 39.130 0.43 0.00 42.25 1.40
5342 6688 3.679502 GTGGCTCGCAAAATGCTTATTTT 59.320 39.130 0.43 0.00 42.25 1.82
5343 6689 3.925913 TGGCTCGCAAAATGCTTATTTTC 59.074 39.130 0.43 0.00 42.25 2.29
5344 6690 4.176271 GGCTCGCAAAATGCTTATTTTCT 58.824 39.130 0.43 0.00 42.25 2.52
5345 6691 4.627035 GGCTCGCAAAATGCTTATTTTCTT 59.373 37.500 0.43 0.00 42.25 2.52
5346 6692 5.445010 GGCTCGCAAAATGCTTATTTTCTTG 60.445 40.000 0.43 0.00 42.25 3.02
5347 6693 5.119125 GCTCGCAAAATGCTTATTTTCTTGT 59.881 36.000 0.43 0.00 42.25 3.16
5348 6694 6.307800 GCTCGCAAAATGCTTATTTTCTTGTA 59.692 34.615 0.43 0.00 42.25 2.41
5349 6695 7.461938 GCTCGCAAAATGCTTATTTTCTTGTAG 60.462 37.037 0.43 0.00 42.25 2.74
5350 6696 6.307800 TCGCAAAATGCTTATTTTCTTGTAGC 59.692 34.615 0.43 0.00 42.25 3.58
5351 6697 6.308766 CGCAAAATGCTTATTTTCTTGTAGCT 59.691 34.615 0.00 0.00 42.25 3.32
5352 6698 7.148755 CGCAAAATGCTTATTTTCTTGTAGCTT 60.149 33.333 0.00 0.00 42.25 3.74
5353 6699 8.498358 GCAAAATGCTTATTTTCTTGTAGCTTT 58.502 29.630 0.00 0.00 40.96 3.51
5354 6700 9.801714 CAAAATGCTTATTTTCTTGTAGCTTTG 57.198 29.630 0.00 0.00 31.96 2.77
5355 6701 8.538409 AAATGCTTATTTTCTTGTAGCTTTGG 57.462 30.769 0.00 0.00 31.97 3.28
5356 6702 6.892658 TGCTTATTTTCTTGTAGCTTTGGA 57.107 33.333 0.00 0.00 33.15 3.53
5357 6703 7.466746 TGCTTATTTTCTTGTAGCTTTGGAT 57.533 32.000 0.00 0.00 33.15 3.41
5358 6704 7.315142 TGCTTATTTTCTTGTAGCTTTGGATG 58.685 34.615 0.00 0.00 33.15 3.51
5359 6705 6.254373 GCTTATTTTCTTGTAGCTTTGGATGC 59.746 38.462 0.00 0.00 0.00 3.91
5360 6706 4.519540 TTTTCTTGTAGCTTTGGATGCC 57.480 40.909 0.00 0.00 0.00 4.40
5361 6707 2.877097 TCTTGTAGCTTTGGATGCCA 57.123 45.000 0.00 0.00 0.00 4.92
5362 6708 3.370840 TCTTGTAGCTTTGGATGCCAT 57.629 42.857 0.00 0.00 31.53 4.40
5363 6709 3.282021 TCTTGTAGCTTTGGATGCCATC 58.718 45.455 0.00 0.00 31.53 3.51
5364 6710 2.804986 TGTAGCTTTGGATGCCATCA 57.195 45.000 7.06 0.00 31.53 3.07
5365 6711 2.646930 TGTAGCTTTGGATGCCATCAG 58.353 47.619 7.06 0.00 31.53 2.90
5366 6712 1.952296 GTAGCTTTGGATGCCATCAGG 59.048 52.381 7.06 0.00 31.53 3.86
5367 6713 0.396695 AGCTTTGGATGCCATCAGGG 60.397 55.000 7.06 0.00 40.85 4.45
5368 6714 1.397390 GCTTTGGATGCCATCAGGGG 61.397 60.000 7.06 0.00 37.04 4.79
5369 6715 0.259647 CTTTGGATGCCATCAGGGGA 59.740 55.000 7.06 0.00 43.39 4.81
5370 6716 0.709397 TTTGGATGCCATCAGGGGAA 59.291 50.000 7.06 0.00 42.03 3.97
5371 6717 0.259647 TTGGATGCCATCAGGGGAAG 59.740 55.000 7.06 0.00 42.03 3.46
5372 6718 1.152368 GGATGCCATCAGGGGAAGG 59.848 63.158 7.06 0.00 42.03 3.46
5373 6719 1.355718 GGATGCCATCAGGGGAAGGA 61.356 60.000 7.06 0.00 42.03 3.36
5374 6720 0.179006 GATGCCATCAGGGGAAGGAC 60.179 60.000 0.00 0.00 42.03 3.85
5375 6721 0.920763 ATGCCATCAGGGGAAGGACA 60.921 55.000 0.00 0.00 42.03 4.02
5376 6722 1.139498 TGCCATCAGGGGAAGGACAA 61.139 55.000 0.00 0.00 33.67 3.18
5377 6723 0.394899 GCCATCAGGGGAAGGACAAG 60.395 60.000 0.00 0.00 33.67 3.16
5378 6724 0.394899 CCATCAGGGGAAGGACAAGC 60.395 60.000 0.00 0.00 33.67 4.01
5379 6725 0.745845 CATCAGGGGAAGGACAAGCG 60.746 60.000 0.00 0.00 0.00 4.68
5380 6726 2.543067 ATCAGGGGAAGGACAAGCGC 62.543 60.000 0.00 0.00 0.00 5.92
5381 6727 2.930562 AGGGGAAGGACAAGCGCT 60.931 61.111 2.64 2.64 0.00 5.92
5382 6728 2.747855 GGGGAAGGACAAGCGCTG 60.748 66.667 12.58 8.13 0.00 5.18
5383 6729 3.435186 GGGAAGGACAAGCGCTGC 61.435 66.667 12.58 3.20 0.00 5.25
5384 6730 3.435186 GGAAGGACAAGCGCTGCC 61.435 66.667 12.58 13.77 0.00 4.85
5385 6731 3.793144 GAAGGACAAGCGCTGCCG 61.793 66.667 12.58 5.26 37.57 5.69
5410 6756 0.312102 GCAATGAAGGCGATTAGGGC 59.688 55.000 0.00 0.00 0.00 5.19
5411 6757 1.972872 CAATGAAGGCGATTAGGGCT 58.027 50.000 0.00 0.00 45.86 5.19
5412 6758 1.876156 CAATGAAGGCGATTAGGGCTC 59.124 52.381 0.00 0.00 42.70 4.70
5413 6759 1.428869 ATGAAGGCGATTAGGGCTCT 58.571 50.000 0.00 0.00 42.70 4.09
5414 6760 1.204146 TGAAGGCGATTAGGGCTCTT 58.796 50.000 0.00 0.00 42.70 2.85
5415 6761 1.139058 TGAAGGCGATTAGGGCTCTTC 59.861 52.381 0.00 0.00 42.70 2.87
5416 6762 1.139058 GAAGGCGATTAGGGCTCTTCA 59.861 52.381 0.00 0.00 42.70 3.02
5417 6763 0.466124 AGGCGATTAGGGCTCTTCAC 59.534 55.000 0.00 0.00 38.65 3.18
5418 6764 0.466124 GGCGATTAGGGCTCTTCACT 59.534 55.000 0.00 0.00 0.00 3.41
5419 6765 1.539280 GGCGATTAGGGCTCTTCACTC 60.539 57.143 0.00 0.00 0.00 3.51
5420 6766 1.866063 GCGATTAGGGCTCTTCACTCG 60.866 57.143 0.00 0.00 0.00 4.18
5421 6767 1.405821 CGATTAGGGCTCTTCACTCGT 59.594 52.381 0.00 0.00 0.00 4.18
5422 6768 2.159226 CGATTAGGGCTCTTCACTCGTT 60.159 50.000 0.00 0.00 0.00 3.85
5423 6769 3.066342 CGATTAGGGCTCTTCACTCGTTA 59.934 47.826 0.00 0.00 0.00 3.18
5424 6770 4.439700 CGATTAGGGCTCTTCACTCGTTAA 60.440 45.833 0.00 0.00 0.00 2.01
5425 6771 5.602628 GATTAGGGCTCTTCACTCGTTAAT 58.397 41.667 0.00 0.00 0.00 1.40
5426 6772 3.983044 AGGGCTCTTCACTCGTTAATT 57.017 42.857 0.00 0.00 0.00 1.40
5427 6773 6.534475 TTAGGGCTCTTCACTCGTTAATTA 57.466 37.500 0.00 0.00 0.00 1.40
5428 6774 5.416271 AGGGCTCTTCACTCGTTAATTAA 57.584 39.130 0.00 0.00 0.00 1.40
5429 6775 5.420409 AGGGCTCTTCACTCGTTAATTAAG 58.580 41.667 0.00 0.00 0.00 1.85
5430 6776 5.187186 AGGGCTCTTCACTCGTTAATTAAGA 59.813 40.000 0.00 0.00 0.00 2.10
5431 6777 5.291371 GGGCTCTTCACTCGTTAATTAAGAC 59.709 44.000 0.00 0.00 0.00 3.01
5432 6778 6.100668 GGCTCTTCACTCGTTAATTAAGACT 58.899 40.000 0.00 0.00 0.00 3.24
5433 6779 6.590677 GGCTCTTCACTCGTTAATTAAGACTT 59.409 38.462 0.00 0.00 0.00 3.01
5434 6780 7.117956 GGCTCTTCACTCGTTAATTAAGACTTT 59.882 37.037 0.00 0.00 0.00 2.66
5435 6781 7.952637 GCTCTTCACTCGTTAATTAAGACTTTG 59.047 37.037 0.00 0.00 0.00 2.77
5436 6782 8.882415 TCTTCACTCGTTAATTAAGACTTTGT 57.118 30.769 0.00 0.00 0.00 2.83
5437 6783 9.970395 TCTTCACTCGTTAATTAAGACTTTGTA 57.030 29.630 0.00 0.00 0.00 2.41
5439 6785 8.752766 TCACTCGTTAATTAAGACTTTGTAGG 57.247 34.615 0.00 0.00 0.00 3.18
5440 6786 7.330208 TCACTCGTTAATTAAGACTTTGTAGGC 59.670 37.037 0.00 0.00 0.00 3.93
5441 6787 6.592994 ACTCGTTAATTAAGACTTTGTAGGCC 59.407 38.462 0.00 0.00 0.00 5.19
5442 6788 5.876460 TCGTTAATTAAGACTTTGTAGGCCC 59.124 40.000 0.00 0.00 0.00 5.80
5443 6789 5.065602 CGTTAATTAAGACTTTGTAGGCCCC 59.934 44.000 0.00 0.00 0.00 5.80
5444 6790 2.773993 TTAAGACTTTGTAGGCCCCG 57.226 50.000 0.00 0.00 0.00 5.73
5445 6791 1.941377 TAAGACTTTGTAGGCCCCGA 58.059 50.000 0.00 0.00 0.00 5.14
5446 6792 0.613777 AAGACTTTGTAGGCCCCGAG 59.386 55.000 0.00 0.00 0.00 4.63
5447 6793 0.252103 AGACTTTGTAGGCCCCGAGA 60.252 55.000 0.00 0.00 0.00 4.04
5448 6794 0.175989 GACTTTGTAGGCCCCGAGAG 59.824 60.000 0.00 0.00 0.00 3.20
5449 6795 1.153349 CTTTGTAGGCCCCGAGAGC 60.153 63.158 0.00 0.00 0.00 4.09
5450 6796 1.612442 TTTGTAGGCCCCGAGAGCT 60.612 57.895 0.00 0.00 0.00 4.09
5451 6797 1.899437 TTTGTAGGCCCCGAGAGCTG 61.899 60.000 0.00 0.00 0.00 4.24
5452 6798 4.228567 GTAGGCCCCGAGAGCTGC 62.229 72.222 0.00 0.00 0.00 5.25
5453 6799 4.777854 TAGGCCCCGAGAGCTGCA 62.778 66.667 0.00 0.00 0.00 4.41
5455 6801 2.656698 TAGGCCCCGAGAGCTGCATA 62.657 60.000 0.00 0.00 0.00 3.14
5456 6802 2.280457 GCCCCGAGAGCTGCATAC 60.280 66.667 1.02 0.00 0.00 2.39
5457 6803 2.028190 CCCCGAGAGCTGCATACG 59.972 66.667 1.02 3.94 0.00 3.06
5458 6804 2.028190 CCCGAGAGCTGCATACGG 59.972 66.667 18.89 18.89 42.67 4.02
5459 6805 2.028190 CCGAGAGCTGCATACGGG 59.972 66.667 18.36 3.63 39.92 5.28
5460 6806 2.028190 CGAGAGCTGCATACGGGG 59.972 66.667 1.02 0.00 0.00 5.73
5461 6807 2.280457 GAGAGCTGCATACGGGGC 60.280 66.667 1.02 0.00 0.00 5.80
5462 6808 3.816367 GAGAGCTGCATACGGGGCC 62.816 68.421 1.02 0.00 0.00 5.80
5469 6815 4.823419 CATACGGGGCCGCGTCAA 62.823 66.667 45.54 32.17 44.19 3.18
5470 6816 4.085204 ATACGGGGCCGCGTCAAA 62.085 61.111 45.54 31.45 44.19 2.69
5471 6817 4.745751 TACGGGGCCGCGTCAAAG 62.746 66.667 45.54 19.12 44.19 2.77
5474 6820 3.733960 GGGGCCGCGTCAAAGTTC 61.734 66.667 3.09 0.00 0.00 3.01
5475 6821 3.733960 GGGCCGCGTCAAAGTTCC 61.734 66.667 4.92 0.00 0.00 3.62
5476 6822 4.084888 GGCCGCGTCAAAGTTCCG 62.085 66.667 4.92 0.00 0.00 4.30
5477 6823 3.343421 GCCGCGTCAAAGTTCCGT 61.343 61.111 4.92 0.00 0.00 4.69
5478 6824 2.549282 CCGCGTCAAAGTTCCGTG 59.451 61.111 4.92 0.00 0.00 4.94
5479 6825 2.241880 CCGCGTCAAAGTTCCGTGT 61.242 57.895 4.92 0.00 0.00 4.49
5480 6826 1.083657 CGCGTCAAAGTTCCGTGTG 60.084 57.895 0.00 0.00 0.00 3.82
5481 6827 1.484227 CGCGTCAAAGTTCCGTGTGA 61.484 55.000 0.00 0.00 0.00 3.58
5482 6828 0.653636 GCGTCAAAGTTCCGTGTGAA 59.346 50.000 0.00 0.00 0.00 3.18
5483 6829 1.332904 GCGTCAAAGTTCCGTGTGAAG 60.333 52.381 0.00 0.00 32.37 3.02
5484 6830 2.198406 CGTCAAAGTTCCGTGTGAAGA 58.802 47.619 0.00 0.00 32.37 2.87
5485 6831 2.034001 CGTCAAAGTTCCGTGTGAAGAC 60.034 50.000 0.00 0.00 32.37 3.01
5486 6832 2.287103 GTCAAAGTTCCGTGTGAAGACC 59.713 50.000 0.00 0.00 32.37 3.85
5487 6833 1.602377 CAAAGTTCCGTGTGAAGACCC 59.398 52.381 0.00 0.00 32.37 4.46
5488 6834 1.129058 AAGTTCCGTGTGAAGACCCT 58.871 50.000 0.00 0.00 32.37 4.34
5489 6835 1.129058 AGTTCCGTGTGAAGACCCTT 58.871 50.000 0.00 0.00 32.37 3.95
5490 6836 1.202651 AGTTCCGTGTGAAGACCCTTG 60.203 52.381 0.00 0.00 32.37 3.61
5491 6837 0.534203 TTCCGTGTGAAGACCCTTGC 60.534 55.000 0.00 0.00 0.00 4.01
5492 6838 1.966451 CCGTGTGAAGACCCTTGCC 60.966 63.158 0.00 0.00 0.00 4.52
5493 6839 2.317609 CGTGTGAAGACCCTTGCCG 61.318 63.158 0.00 0.00 0.00 5.69
5494 6840 1.966451 GTGTGAAGACCCTTGCCGG 60.966 63.158 0.00 0.00 0.00 6.13
5495 6841 2.430367 GTGAAGACCCTTGCCGGT 59.570 61.111 1.90 0.00 39.49 5.28
5496 6842 1.228154 GTGAAGACCCTTGCCGGTT 60.228 57.895 1.90 0.00 35.79 4.44
5497 6843 1.228124 TGAAGACCCTTGCCGGTTG 60.228 57.895 1.90 0.00 35.79 3.77
5498 6844 1.971695 GAAGACCCTTGCCGGTTGG 60.972 63.158 1.90 2.64 35.79 3.77
5499 6845 2.406002 GAAGACCCTTGCCGGTTGGA 62.406 60.000 1.90 0.00 35.79 3.53
5500 6846 2.671963 GACCCTTGCCGGTTGGAC 60.672 66.667 1.90 0.00 35.79 4.02
5501 6847 3.175710 ACCCTTGCCGGTTGGACT 61.176 61.111 1.90 0.00 37.49 3.85
5502 6848 2.359975 CCCTTGCCGGTTGGACTC 60.360 66.667 1.90 0.00 37.49 3.36
5503 6849 2.429930 CCTTGCCGGTTGGACTCA 59.570 61.111 1.90 0.00 37.49 3.41
5504 6850 1.672356 CCTTGCCGGTTGGACTCAG 60.672 63.158 1.90 0.00 37.49 3.35
5505 6851 1.371183 CTTGCCGGTTGGACTCAGA 59.629 57.895 1.90 0.00 37.49 3.27
5506 6852 0.036010 CTTGCCGGTTGGACTCAGAT 60.036 55.000 1.90 0.00 37.49 2.90
5507 6853 0.321564 TTGCCGGTTGGACTCAGATG 60.322 55.000 1.90 0.00 37.49 2.90
5508 6854 1.450312 GCCGGTTGGACTCAGATGG 60.450 63.158 1.90 0.00 37.49 3.51
5509 6855 1.450312 CCGGTTGGACTCAGATGGC 60.450 63.158 0.00 0.00 37.49 4.40
5510 6856 1.599047 CGGTTGGACTCAGATGGCT 59.401 57.895 0.00 0.00 0.00 4.75
5511 6857 0.460987 CGGTTGGACTCAGATGGCTC 60.461 60.000 0.00 0.00 0.00 4.70
5512 6858 0.107459 GGTTGGACTCAGATGGCTCC 60.107 60.000 0.00 0.00 0.00 4.70
5513 6859 0.615331 GTTGGACTCAGATGGCTCCA 59.385 55.000 0.00 0.00 0.00 3.86
5514 6860 1.003580 GTTGGACTCAGATGGCTCCAA 59.996 52.381 7.61 7.61 39.90 3.53
5515 6861 0.615331 TGGACTCAGATGGCTCCAAC 59.385 55.000 0.00 0.00 29.50 3.77
5516 6862 0.460987 GGACTCAGATGGCTCCAACG 60.461 60.000 0.00 0.00 0.00 4.10
5517 6863 0.460987 GACTCAGATGGCTCCAACGG 60.461 60.000 0.00 0.00 0.00 4.44
5518 6864 1.817099 CTCAGATGGCTCCAACGGC 60.817 63.158 0.00 0.00 0.00 5.68
5519 6865 2.249413 CTCAGATGGCTCCAACGGCT 62.249 60.000 0.00 0.00 0.00 5.52
5520 6866 1.817099 CAGATGGCTCCAACGGCTC 60.817 63.158 0.00 0.00 0.00 4.70
5521 6867 2.514824 GATGGCTCCAACGGCTCC 60.515 66.667 0.00 0.00 0.00 4.70
5522 6868 3.011517 ATGGCTCCAACGGCTCCT 61.012 61.111 0.00 0.00 0.00 3.69
5523 6869 3.335356 ATGGCTCCAACGGCTCCTG 62.335 63.158 0.00 0.00 0.00 3.86
5524 6870 4.021925 GGCTCCAACGGCTCCTGT 62.022 66.667 0.00 0.00 0.00 4.00
5525 6871 2.656069 GGCTCCAACGGCTCCTGTA 61.656 63.158 0.00 0.00 0.00 2.74
5526 6872 1.448013 GCTCCAACGGCTCCTGTAC 60.448 63.158 0.00 0.00 0.00 2.90
5527 6873 1.889530 GCTCCAACGGCTCCTGTACT 61.890 60.000 0.00 0.00 0.00 2.73
5528 6874 0.108615 CTCCAACGGCTCCTGTACTG 60.109 60.000 0.00 0.00 0.00 2.74
5529 6875 0.830444 TCCAACGGCTCCTGTACTGT 60.830 55.000 0.00 0.00 0.00 3.55
5530 6876 0.389948 CCAACGGCTCCTGTACTGTC 60.390 60.000 0.00 0.00 0.00 3.51
5531 6877 0.603569 CAACGGCTCCTGTACTGTCT 59.396 55.000 0.00 0.00 0.00 3.41
5532 6878 0.603569 AACGGCTCCTGTACTGTCTG 59.396 55.000 0.00 0.00 0.00 3.51
5533 6879 1.251527 ACGGCTCCTGTACTGTCTGG 61.252 60.000 0.00 0.00 0.00 3.86
5534 6880 1.219393 GGCTCCTGTACTGTCTGGC 59.781 63.158 0.00 0.00 0.00 4.85
5535 6881 1.153745 GCTCCTGTACTGTCTGGCG 60.154 63.158 0.00 0.00 0.00 5.69
5536 6882 1.595993 GCTCCTGTACTGTCTGGCGA 61.596 60.000 0.00 0.00 0.00 5.54
5537 6883 0.171455 CTCCTGTACTGTCTGGCGAC 59.829 60.000 0.00 3.11 40.64 5.19
5538 6884 1.215647 CCTGTACTGTCTGGCGACC 59.784 63.158 6.94 0.00 39.47 4.79
5539 6885 1.251527 CCTGTACTGTCTGGCGACCT 61.252 60.000 6.94 0.00 39.47 3.85
5540 6886 0.109086 CTGTACTGTCTGGCGACCTG 60.109 60.000 6.94 0.00 39.47 4.00
5541 6887 1.215647 GTACTGTCTGGCGACCTGG 59.784 63.158 6.94 0.00 39.47 4.45
5542 6888 1.982395 TACTGTCTGGCGACCTGGG 60.982 63.158 0.00 0.00 39.47 4.45
5543 6889 4.767255 CTGTCTGGCGACCTGGGC 62.767 72.222 0.00 0.00 39.47 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 73 1.064946 GTAGATCGCACGCTGCTCT 59.935 57.895 0.00 7.40 42.25 4.09
82 85 2.336809 CGGGCAGGCTCGTAGATC 59.663 66.667 5.18 0.00 34.82 2.75
136 139 4.498520 CGTCCGTGATGCGCCTCT 62.499 66.667 13.93 0.00 39.71 3.69
156 170 1.152963 AGGTGCAACTGGTGGTGTC 60.153 57.895 1.66 0.00 36.74 3.67
160 174 0.321653 GTAGGAGGTGCAACTGGTGG 60.322 60.000 10.28 0.00 36.74 4.61
162 176 1.671742 CGTAGGAGGTGCAACTGGT 59.328 57.895 10.28 0.00 36.74 4.00
191 213 1.091197 ACCGAACCGCACGAAAGTTT 61.091 50.000 0.00 0.00 46.40 2.66
195 217 1.373246 CCTACCGAACCGCACGAAA 60.373 57.895 0.00 0.00 0.00 3.46
196 218 2.203972 CTCCTACCGAACCGCACGAA 62.204 60.000 0.00 0.00 0.00 3.85
200 222 2.642254 CCACTCCTACCGAACCGCA 61.642 63.158 0.00 0.00 0.00 5.69
208 230 1.377725 TCGTCGTCCCACTCCTACC 60.378 63.158 0.00 0.00 0.00 3.18
209 231 0.957395 TGTCGTCGTCCCACTCCTAC 60.957 60.000 0.00 0.00 0.00 3.18
210 232 0.250858 TTGTCGTCGTCCCACTCCTA 60.251 55.000 0.00 0.00 0.00 2.94
211 233 1.529948 TTGTCGTCGTCCCACTCCT 60.530 57.895 0.00 0.00 0.00 3.69
212 234 1.372623 GTTGTCGTCGTCCCACTCC 60.373 63.158 0.00 0.00 0.00 3.85
213 235 1.728426 CGTTGTCGTCGTCCCACTC 60.728 63.158 0.00 0.00 0.00 3.51
287 310 3.292460 CCTACTCATCCTCGGAGAAGTT 58.708 50.000 6.58 0.00 36.26 2.66
291 314 0.178987 GCCCTACTCATCCTCGGAGA 60.179 60.000 6.58 0.00 36.26 3.71
334 359 3.469863 GACGGACTGGCCCACACAA 62.470 63.158 0.00 0.00 0.00 3.33
335 360 3.936203 GACGGACTGGCCCACACA 61.936 66.667 0.00 0.00 0.00 3.72
354 379 3.224269 GCGAGGGAGAGTAGAATAAGGT 58.776 50.000 0.00 0.00 0.00 3.50
357 382 2.228059 CGGCGAGGGAGAGTAGAATAA 58.772 52.381 0.00 0.00 0.00 1.40
359 384 0.824182 CCGGCGAGGGAGAGTAGAAT 60.824 60.000 9.30 0.00 35.97 2.40
382 407 2.151202 ACCGATGAAATGAAGTTGCGT 58.849 42.857 0.00 0.00 0.00 5.24
387 412 7.770433 TCAATGATAAGACCGATGAAATGAAGT 59.230 33.333 0.00 0.00 0.00 3.01
393 418 5.239306 GGCATCAATGATAAGACCGATGAAA 59.761 40.000 0.00 0.00 33.66 2.69
417 443 1.227764 CCATCTGCCGTCTCCATGG 60.228 63.158 4.97 4.97 0.00 3.66
469 498 2.332117 CCGGCCCTAAACCTATCCTAA 58.668 52.381 0.00 0.00 0.00 2.69
534 567 4.145276 CGAAATTTATGCAAACACGACGA 58.855 39.130 0.00 0.00 0.00 4.20
574 607 6.038603 ACGCTGTCAGCATACATTTCAATAAT 59.961 34.615 24.13 0.00 42.58 1.28
575 608 5.353956 ACGCTGTCAGCATACATTTCAATAA 59.646 36.000 24.13 0.00 42.58 1.40
577 610 3.691118 ACGCTGTCAGCATACATTTCAAT 59.309 39.130 24.13 0.00 42.58 2.57
591 624 0.392706 ACTGTCATCCAACGCTGTCA 59.607 50.000 0.00 0.00 0.00 3.58
592 625 1.071605 GACTGTCATCCAACGCTGTC 58.928 55.000 2.24 0.00 0.00 3.51
598 631 3.667497 TGTCTGAGACTGTCATCCAAC 57.333 47.619 14.42 2.49 33.51 3.77
602 635 5.417811 ACATTGATGTCTGAGACTGTCATC 58.582 41.667 14.42 8.76 35.87 2.92
622 655 0.836400 AGGGACCAGTTCACCGACAT 60.836 55.000 0.00 0.00 0.00 3.06
624 657 1.004918 CAGGGACCAGTTCACCGAC 60.005 63.158 0.00 0.00 0.00 4.79
647 680 2.758770 TTTTCTCCCGCGTCTGTCCG 62.759 60.000 4.92 0.00 0.00 4.79
648 681 0.391263 ATTTTCTCCCGCGTCTGTCC 60.391 55.000 4.92 0.00 0.00 4.02
650 683 1.156736 CAATTTTCTCCCGCGTCTGT 58.843 50.000 4.92 0.00 0.00 3.41
651 684 0.447801 CCAATTTTCTCCCGCGTCTG 59.552 55.000 4.92 0.00 0.00 3.51
652 685 1.305930 GCCAATTTTCTCCCGCGTCT 61.306 55.000 4.92 0.00 0.00 4.18
653 686 1.136774 GCCAATTTTCTCCCGCGTC 59.863 57.895 4.92 0.00 0.00 5.19
654 687 2.686816 CGCCAATTTTCTCCCGCGT 61.687 57.895 4.92 0.00 35.15 6.01
655 688 2.100216 CGCCAATTTTCTCCCGCG 59.900 61.111 0.00 0.00 0.00 6.46
656 689 1.873270 AACCGCCAATTTTCTCCCGC 61.873 55.000 0.00 0.00 0.00 6.13
657 690 0.601057 AAACCGCCAATTTTCTCCCG 59.399 50.000 0.00 0.00 0.00 5.14
658 691 3.581755 GTTAAACCGCCAATTTTCTCCC 58.418 45.455 0.00 0.00 0.00 4.30
659 692 3.239254 CGTTAAACCGCCAATTTTCTCC 58.761 45.455 0.00 0.00 0.00 3.71
660 693 3.892522 ACGTTAAACCGCCAATTTTCTC 58.107 40.909 0.00 0.00 0.00 2.87
663 696 3.124560 CCAACGTTAAACCGCCAATTTT 58.875 40.909 0.00 0.00 0.00 1.82
685 718 5.723295 AGCAACAGTTTTATTAGGGCATTG 58.277 37.500 0.00 0.00 0.00 2.82
686 719 7.660030 ATAGCAACAGTTTTATTAGGGCATT 57.340 32.000 0.00 0.00 0.00 3.56
816 849 3.538591 TGGATCTTGATGCTCATGTGAC 58.461 45.455 0.00 0.00 0.00 3.67
830 863 0.904865 TCGTGAGGCCACTGGATCTT 60.905 55.000 5.01 0.00 41.06 2.40
922 1304 1.335810 CTACTGTGCGCGGATTAGGTA 59.664 52.381 14.30 6.51 0.00 3.08
1342 2145 4.394712 GGGACTGAGCGGTGGTGG 62.395 72.222 0.00 0.00 0.00 4.61
1343 2146 3.302347 GAGGGACTGAGCGGTGGTG 62.302 68.421 0.00 0.00 41.55 4.17
1344 2147 2.997897 GAGGGACTGAGCGGTGGT 60.998 66.667 0.00 0.00 41.55 4.16
1345 2148 4.135153 CGAGGGACTGAGCGGTGG 62.135 72.222 0.00 0.00 41.55 4.61
1346 2149 3.062466 TCGAGGGACTGAGCGGTG 61.062 66.667 0.00 0.00 41.55 4.94
1347 2150 3.063084 GTCGAGGGACTGAGCGGT 61.063 66.667 0.00 0.00 41.55 5.68
1896 2766 0.305922 GGATTCGAGCAAGCAATCCG 59.694 55.000 6.81 0.04 37.04 4.18
1913 2783 1.053424 ACCACAAGAACTAAGCCGGA 58.947 50.000 5.05 0.00 0.00 5.14
2121 3014 2.415168 TCGCAGCTTTAGGTGAAAATCG 59.585 45.455 12.77 6.39 45.66 3.34
2124 3017 4.846779 AATTCGCAGCTTTAGGTGAAAA 57.153 36.364 12.77 6.11 45.66 2.29
2125 3018 5.676079 GCATAATTCGCAGCTTTAGGTGAAA 60.676 40.000 12.77 6.43 45.66 2.69
2129 3022 3.278574 TGCATAATTCGCAGCTTTAGGT 58.721 40.909 0.00 0.00 33.55 3.08
2136 3029 4.472691 TCATAGTTGCATAATTCGCAGC 57.527 40.909 8.12 8.12 41.18 5.25
2140 3033 8.604035 AGTTGTAGTTCATAGTTGCATAATTCG 58.396 33.333 0.00 0.00 0.00 3.34
2171 3064 7.968405 GCCAAATTTGTTACCATCTTGTACTAG 59.032 37.037 16.73 0.00 0.00 2.57
2172 3065 7.668052 AGCCAAATTTGTTACCATCTTGTACTA 59.332 33.333 16.73 0.00 0.00 1.82
2174 3067 6.687604 AGCCAAATTTGTTACCATCTTGTAC 58.312 36.000 16.73 0.00 0.00 2.90
2175 3068 6.909550 AGCCAAATTTGTTACCATCTTGTA 57.090 33.333 16.73 0.00 0.00 2.41
2176 3069 5.806654 AGCCAAATTTGTTACCATCTTGT 57.193 34.783 16.73 0.00 0.00 3.16
2177 3070 5.990996 ACAAGCCAAATTTGTTACCATCTTG 59.009 36.000 16.73 16.38 35.32 3.02
2178 3071 6.173427 ACAAGCCAAATTTGTTACCATCTT 57.827 33.333 16.73 5.70 35.32 2.40
2179 3072 5.806654 ACAAGCCAAATTTGTTACCATCT 57.193 34.783 16.73 0.35 35.32 2.90
2180 3073 7.655732 ACTTTACAAGCCAAATTTGTTACCATC 59.344 33.333 16.73 0.00 39.36 3.51
2181 3074 7.505258 ACTTTACAAGCCAAATTTGTTACCAT 58.495 30.769 16.73 1.15 39.36 3.55
2182 3075 6.879400 ACTTTACAAGCCAAATTTGTTACCA 58.121 32.000 16.73 0.00 39.36 3.25
2183 3076 7.780008 AACTTTACAAGCCAAATTTGTTACC 57.220 32.000 16.73 2.91 39.36 2.85
2207 3100 2.693074 GCTGTTTCAGTGGAGGGAAAAA 59.307 45.455 0.00 0.00 35.03 1.94
2208 3101 2.306847 GCTGTTTCAGTGGAGGGAAAA 58.693 47.619 0.00 0.00 35.03 2.29
2209 3102 1.214175 TGCTGTTTCAGTGGAGGGAAA 59.786 47.619 0.00 0.00 33.43 3.13
2210 3103 0.843309 TGCTGTTTCAGTGGAGGGAA 59.157 50.000 0.00 0.00 33.43 3.97
2211 3104 0.108585 GTGCTGTTTCAGTGGAGGGA 59.891 55.000 0.00 0.00 33.43 4.20
2212 3105 1.230635 CGTGCTGTTTCAGTGGAGGG 61.231 60.000 0.00 0.00 33.43 4.30
2213 3106 0.249868 TCGTGCTGTTTCAGTGGAGG 60.250 55.000 0.00 0.00 33.43 4.30
2214 3107 1.143305 CTCGTGCTGTTTCAGTGGAG 58.857 55.000 0.00 0.67 33.43 3.86
2215 3108 0.464036 ACTCGTGCTGTTTCAGTGGA 59.536 50.000 0.00 0.00 33.43 4.02
2216 3109 0.583438 CACTCGTGCTGTTTCAGTGG 59.417 55.000 0.00 0.00 33.43 4.00
2217 3110 0.583438 CCACTCGTGCTGTTTCAGTG 59.417 55.000 0.00 0.00 35.27 3.66
2218 3111 0.464036 TCCACTCGTGCTGTTTCAGT 59.536 50.000 0.00 0.00 33.43 3.41
2219 3112 0.861837 GTCCACTCGTGCTGTTTCAG 59.138 55.000 0.00 0.00 34.12 3.02
2267 3160 3.591196 ATGAGTGACAGCTGAGAACTC 57.409 47.619 26.78 26.78 38.18 3.01
2447 3541 3.547746 TCGCAAAGAAAAGTTACCCTGT 58.452 40.909 0.00 0.00 0.00 4.00
2461 3585 2.440501 GCGGTACATTTGATCGCAAAG 58.559 47.619 5.69 0.00 46.27 2.77
2520 3644 0.534877 TGTGCAGGCAAGTGGTACTG 60.535 55.000 0.00 0.00 0.00 2.74
2564 3688 7.242322 AGTTTCTTCCTACGGAATTACTTCT 57.758 36.000 0.00 0.00 41.23 2.85
2664 3800 3.862267 CGACGCATCAGAGAGAAAGAAAT 59.138 43.478 0.00 0.00 0.00 2.17
2667 3803 1.813178 ACGACGCATCAGAGAGAAAGA 59.187 47.619 0.00 0.00 0.00 2.52
2669 3805 1.539827 TCACGACGCATCAGAGAGAAA 59.460 47.619 0.00 0.00 0.00 2.52
2960 4228 7.577616 GCATGTGTATATATGCCTGAGTGACTA 60.578 40.741 9.62 0.00 43.29 2.59
2961 4229 6.695429 CATGTGTATATATGCCTGAGTGACT 58.305 40.000 0.00 0.00 0.00 3.41
2963 4231 5.482006 GCATGTGTATATATGCCTGAGTGA 58.518 41.667 9.62 0.00 43.29 3.41
2964 4232 5.791367 GCATGTGTATATATGCCTGAGTG 57.209 43.478 9.62 0.00 43.29 3.51
2998 4266 3.008923 TCAGGTACAATCCATCTGCACAA 59.991 43.478 0.00 0.00 0.00 3.33
3314 4598 1.409064 GATGACTCGGATGTGGTGCTA 59.591 52.381 0.00 0.00 0.00 3.49
3317 4601 2.002586 GTTGATGACTCGGATGTGGTG 58.997 52.381 0.00 0.00 0.00 4.17
3318 4602 1.623311 TGTTGATGACTCGGATGTGGT 59.377 47.619 0.00 0.00 0.00 4.16
3319 4603 2.385013 TGTTGATGACTCGGATGTGG 57.615 50.000 0.00 0.00 0.00 4.17
3320 4604 4.952262 AAATGTTGATGACTCGGATGTG 57.048 40.909 0.00 0.00 0.00 3.21
3321 4605 4.156556 CCAAAATGTTGATGACTCGGATGT 59.843 41.667 0.00 0.00 36.83 3.06
3322 4606 4.156556 ACCAAAATGTTGATGACTCGGATG 59.843 41.667 0.00 0.00 36.83 3.51
3323 4607 4.335416 ACCAAAATGTTGATGACTCGGAT 58.665 39.130 0.00 0.00 36.83 4.18
3324 4608 3.750371 ACCAAAATGTTGATGACTCGGA 58.250 40.909 0.00 0.00 36.83 4.55
3325 4609 3.501828 TGACCAAAATGTTGATGACTCGG 59.498 43.478 0.00 0.00 36.83 4.63
3348 4635 4.022416 TGGTAAGTGTGCCATTGATTTGAC 60.022 41.667 0.00 0.00 34.08 3.18
3400 4695 2.429610 GCCTCCATCTTGTCGTACCTAA 59.570 50.000 0.00 0.00 0.00 2.69
3706 5001 1.004745 GGACCATGTTCATGACCCACT 59.995 52.381 13.51 0.00 0.00 4.00
3820 5115 1.223187 CTTGTGGTGGTACGGTTGAC 58.777 55.000 0.00 0.00 0.00 3.18
3825 5120 2.359478 GGCCTTGTGGTGGTACGG 60.359 66.667 0.00 0.00 35.27 4.02
3834 5129 0.606401 CACTGTGGTAGGGCCTTGTG 60.606 60.000 13.45 8.11 38.35 3.33
3896 5192 0.721718 CGAGATCAGAAACCGTTGCC 59.278 55.000 0.00 0.00 0.00 4.52
4013 5313 8.428852 TGCAGATTATGTATGTATGTTACCTGT 58.571 33.333 0.00 0.00 0.00 4.00
4088 5388 3.443045 AGAATTGCAAGCCGGCCG 61.443 61.111 26.15 21.04 0.00 6.13
4100 5403 3.087031 CCATCTCACACCTTGCAGAATT 58.913 45.455 0.00 0.00 0.00 2.17
4102 5405 1.699083 TCCATCTCACACCTTGCAGAA 59.301 47.619 0.00 0.00 0.00 3.02
4373 5680 3.370366 CCAACTTTGAGATCTTCTGAGCG 59.630 47.826 0.00 0.00 33.18 5.03
4637 5945 5.951747 AGCCAAGCTGGATTTTAAATACTCA 59.048 36.000 1.33 0.00 40.96 3.41
4663 5971 5.404366 TCATCGGTTAACTTTTCTGAAGACG 59.596 40.000 5.42 0.00 0.00 4.18
4695 6003 8.660373 GTCTGCTATGAATAAATCCTTAATCCG 58.340 37.037 0.00 0.00 0.00 4.18
4701 6009 7.663493 GCTTAGGTCTGCTATGAATAAATCCTT 59.337 37.037 0.00 0.00 0.00 3.36
4718 6026 3.181480 GCGAGATCTGAAAGCTTAGGTCT 60.181 47.826 11.12 11.12 37.11 3.85
4722 6030 4.032672 CAGTTGCGAGATCTGAAAGCTTAG 59.967 45.833 0.00 0.00 0.00 2.18
4725 6033 2.289320 ACAGTTGCGAGATCTGAAAGCT 60.289 45.455 0.00 0.00 33.93 3.74
4762 6070 6.429385 AGTTGCGAGATCTGAAGAAGAAAAAT 59.571 34.615 0.00 0.00 38.79 1.82
4859 6167 5.979993 TCAATTCAATTCATGACCCCATTG 58.020 37.500 10.38 10.38 37.92 2.82
4925 6235 2.807967 TGGCAAAGTTTCAGATCAGACG 59.192 45.455 0.00 0.00 0.00 4.18
4943 6253 1.338973 CATGCAGTATGGACCAATGGC 59.661 52.381 0.00 0.77 41.42 4.40
4951 6261 0.552363 ATGTGGGCATGCAGTATGGA 59.448 50.000 21.36 0.00 44.23 3.41
4994 6304 0.110192 GTTAGCTGCGAGTGTTTGGC 60.110 55.000 0.00 0.00 0.00 4.52
5099 6409 7.596248 CAGCCCAGGATAATAAAATTTCAATCG 59.404 37.037 0.00 0.00 0.00 3.34
5172 6511 4.020617 CGGGAGGTCAGGCTTGCA 62.021 66.667 0.00 0.00 0.00 4.08
5173 6512 2.543067 AATCGGGAGGTCAGGCTTGC 62.543 60.000 0.00 0.00 0.00 4.01
5174 6513 0.462759 GAATCGGGAGGTCAGGCTTG 60.463 60.000 0.00 0.00 0.00 4.01
5215 6554 3.702045 ACCCGGTTTTCAAAATGTGAAGA 59.298 39.130 0.00 0.00 46.85 2.87
5236 6575 0.846693 AATCCCACCTGCCCTATCAC 59.153 55.000 0.00 0.00 0.00 3.06
5241 6580 0.786435 AGAAAAATCCCACCTGCCCT 59.214 50.000 0.00 0.00 0.00 5.19
5242 6581 1.276138 CAAGAAAAATCCCACCTGCCC 59.724 52.381 0.00 0.00 0.00 5.36
5244 6583 2.289010 CCACAAGAAAAATCCCACCTGC 60.289 50.000 0.00 0.00 0.00 4.85
5245 6584 2.289010 GCCACAAGAAAAATCCCACCTG 60.289 50.000 0.00 0.00 0.00 4.00
5246 6585 1.970640 GCCACAAGAAAAATCCCACCT 59.029 47.619 0.00 0.00 0.00 4.00
5248 6587 1.336795 CCGCCACAAGAAAAATCCCAC 60.337 52.381 0.00 0.00 0.00 4.61
5249 6588 0.965439 CCGCCACAAGAAAAATCCCA 59.035 50.000 0.00 0.00 0.00 4.37
5259 6605 0.667993 TTTCTTCTTGCCGCCACAAG 59.332 50.000 6.97 6.97 46.86 3.16
5260 6606 1.066908 CTTTTCTTCTTGCCGCCACAA 59.933 47.619 0.00 0.00 0.00 3.33
5264 6610 3.850122 AATACTTTTCTTCTTGCCGCC 57.150 42.857 0.00 0.00 0.00 6.13
5299 6645 5.371526 CACTAAGTCATTATGCAGGTGGAT 58.628 41.667 0.00 0.00 0.00 3.41
5310 6656 3.603158 TTGCGAGCCACTAAGTCATTA 57.397 42.857 0.00 0.00 0.00 1.90
5331 6677 7.895759 TCCAAAGCTACAAGAAAATAAGCATT 58.104 30.769 0.00 0.00 35.63 3.56
5332 6678 7.466746 TCCAAAGCTACAAGAAAATAAGCAT 57.533 32.000 0.00 0.00 35.63 3.79
5333 6679 6.892658 TCCAAAGCTACAAGAAAATAAGCA 57.107 33.333 0.00 0.00 35.63 3.91
5334 6680 6.254373 GCATCCAAAGCTACAAGAAAATAAGC 59.746 38.462 0.00 0.00 0.00 3.09
5335 6681 6.753744 GGCATCCAAAGCTACAAGAAAATAAG 59.246 38.462 0.00 0.00 0.00 1.73
5336 6682 6.210385 TGGCATCCAAAGCTACAAGAAAATAA 59.790 34.615 0.00 0.00 0.00 1.40
5337 6683 5.714333 TGGCATCCAAAGCTACAAGAAAATA 59.286 36.000 0.00 0.00 0.00 1.40
5338 6684 4.527816 TGGCATCCAAAGCTACAAGAAAAT 59.472 37.500 0.00 0.00 0.00 1.82
5339 6685 3.894427 TGGCATCCAAAGCTACAAGAAAA 59.106 39.130 0.00 0.00 0.00 2.29
5340 6686 3.495331 TGGCATCCAAAGCTACAAGAAA 58.505 40.909 0.00 0.00 0.00 2.52
5341 6687 3.153369 TGGCATCCAAAGCTACAAGAA 57.847 42.857 0.00 0.00 0.00 2.52
5342 6688 2.877097 TGGCATCCAAAGCTACAAGA 57.123 45.000 0.00 0.00 0.00 3.02
5343 6689 3.018856 TGATGGCATCCAAAGCTACAAG 58.981 45.455 23.92 0.00 36.95 3.16
5344 6690 3.018856 CTGATGGCATCCAAAGCTACAA 58.981 45.455 23.92 1.02 36.95 2.41
5345 6691 2.646930 CTGATGGCATCCAAAGCTACA 58.353 47.619 23.92 2.42 36.95 2.74
5346 6692 1.952296 CCTGATGGCATCCAAAGCTAC 59.048 52.381 23.92 0.00 36.95 3.58
5347 6693 1.133699 CCCTGATGGCATCCAAAGCTA 60.134 52.381 23.92 3.22 36.95 3.32
5348 6694 0.396695 CCCTGATGGCATCCAAAGCT 60.397 55.000 23.92 0.00 36.95 3.74
5349 6695 1.397390 CCCCTGATGGCATCCAAAGC 61.397 60.000 23.92 0.00 36.95 3.51
5350 6696 0.259647 TCCCCTGATGGCATCCAAAG 59.740 55.000 23.92 14.60 36.95 2.77
5351 6697 0.709397 TTCCCCTGATGGCATCCAAA 59.291 50.000 23.92 5.44 36.95 3.28
5352 6698 0.259647 CTTCCCCTGATGGCATCCAA 59.740 55.000 23.92 6.19 36.95 3.53
5353 6699 1.648302 CCTTCCCCTGATGGCATCCA 61.648 60.000 23.92 11.49 38.19 3.41
5354 6700 1.152368 CCTTCCCCTGATGGCATCC 59.848 63.158 23.92 7.43 0.00 3.51
5355 6701 0.179006 GTCCTTCCCCTGATGGCATC 60.179 60.000 20.52 20.52 36.10 3.91
5356 6702 0.920763 TGTCCTTCCCCTGATGGCAT 60.921 55.000 0.00 0.00 36.10 4.40
5357 6703 1.139498 TTGTCCTTCCCCTGATGGCA 61.139 55.000 0.00 0.00 36.10 4.92
5358 6704 0.394899 CTTGTCCTTCCCCTGATGGC 60.395 60.000 0.00 0.00 36.10 4.40
5359 6705 0.394899 GCTTGTCCTTCCCCTGATGG 60.395 60.000 0.00 0.00 37.19 3.51
5360 6706 0.745845 CGCTTGTCCTTCCCCTGATG 60.746 60.000 0.00 0.00 0.00 3.07
5361 6707 1.604378 CGCTTGTCCTTCCCCTGAT 59.396 57.895 0.00 0.00 0.00 2.90
5362 6708 3.068881 CGCTTGTCCTTCCCCTGA 58.931 61.111 0.00 0.00 0.00 3.86
5363 6709 2.747855 GCGCTTGTCCTTCCCCTG 60.748 66.667 0.00 0.00 0.00 4.45
5364 6710 2.930562 AGCGCTTGTCCTTCCCCT 60.931 61.111 2.64 0.00 0.00 4.79
5365 6711 2.747855 CAGCGCTTGTCCTTCCCC 60.748 66.667 7.50 0.00 0.00 4.81
5366 6712 3.435186 GCAGCGCTTGTCCTTCCC 61.435 66.667 7.50 0.00 0.00 3.97
5367 6713 3.435186 GGCAGCGCTTGTCCTTCC 61.435 66.667 7.50 0.00 0.00 3.46
5368 6714 3.793144 CGGCAGCGCTTGTCCTTC 61.793 66.667 7.50 0.00 0.00 3.46
5391 6737 0.312102 GCCCTAATCGCCTTCATTGC 59.688 55.000 0.00 0.00 0.00 3.56
5392 6738 1.876156 GAGCCCTAATCGCCTTCATTG 59.124 52.381 0.00 0.00 0.00 2.82
5393 6739 1.771255 AGAGCCCTAATCGCCTTCATT 59.229 47.619 0.00 0.00 0.00 2.57
5394 6740 1.428869 AGAGCCCTAATCGCCTTCAT 58.571 50.000 0.00 0.00 0.00 2.57
5395 6741 1.139058 GAAGAGCCCTAATCGCCTTCA 59.861 52.381 0.00 0.00 35.43 3.02
5396 6742 1.139058 TGAAGAGCCCTAATCGCCTTC 59.861 52.381 0.00 0.00 35.68 3.46
5397 6743 1.134371 GTGAAGAGCCCTAATCGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
5398 6744 0.466124 GTGAAGAGCCCTAATCGCCT 59.534 55.000 0.00 0.00 0.00 5.52
5399 6745 0.466124 AGTGAAGAGCCCTAATCGCC 59.534 55.000 0.00 0.00 0.00 5.54
5400 6746 1.859383 GAGTGAAGAGCCCTAATCGC 58.141 55.000 0.00 0.00 0.00 4.58
5401 6747 1.405821 ACGAGTGAAGAGCCCTAATCG 59.594 52.381 0.00 0.00 35.21 3.34
5402 6748 3.528597 AACGAGTGAAGAGCCCTAATC 57.471 47.619 0.00 0.00 0.00 1.75
5403 6749 5.615925 ATTAACGAGTGAAGAGCCCTAAT 57.384 39.130 0.00 0.00 0.00 1.73
5404 6750 5.416271 AATTAACGAGTGAAGAGCCCTAA 57.584 39.130 0.00 0.00 0.00 2.69
5405 6751 6.379133 TCTTAATTAACGAGTGAAGAGCCCTA 59.621 38.462 0.00 0.00 0.00 3.53
5406 6752 3.983044 AATTAACGAGTGAAGAGCCCT 57.017 42.857 0.00 0.00 0.00 5.19
5407 6753 5.291371 GTCTTAATTAACGAGTGAAGAGCCC 59.709 44.000 0.00 0.00 0.00 5.19
5408 6754 6.100668 AGTCTTAATTAACGAGTGAAGAGCC 58.899 40.000 0.00 0.00 0.00 4.70
5409 6755 7.583860 AAGTCTTAATTAACGAGTGAAGAGC 57.416 36.000 0.00 0.00 0.00 4.09
5410 6756 8.979574 ACAAAGTCTTAATTAACGAGTGAAGAG 58.020 33.333 0.00 0.00 0.00 2.85
5411 6757 8.882415 ACAAAGTCTTAATTAACGAGTGAAGA 57.118 30.769 0.00 0.00 0.00 2.87
5413 6759 9.199982 CCTACAAAGTCTTAATTAACGAGTGAA 57.800 33.333 0.00 0.00 0.00 3.18
5414 6760 7.330208 GCCTACAAAGTCTTAATTAACGAGTGA 59.670 37.037 0.00 0.00 0.00 3.41
5415 6761 7.412672 GGCCTACAAAGTCTTAATTAACGAGTG 60.413 40.741 0.00 0.00 0.00 3.51
5416 6762 6.592994 GGCCTACAAAGTCTTAATTAACGAGT 59.407 38.462 0.00 0.00 0.00 4.18
5417 6763 6.036844 GGGCCTACAAAGTCTTAATTAACGAG 59.963 42.308 0.84 0.00 0.00 4.18
5418 6764 5.876460 GGGCCTACAAAGTCTTAATTAACGA 59.124 40.000 0.84 0.00 0.00 3.85
5419 6765 5.065602 GGGGCCTACAAAGTCTTAATTAACG 59.934 44.000 0.84 0.00 0.00 3.18
5420 6766 5.065602 CGGGGCCTACAAAGTCTTAATTAAC 59.934 44.000 0.84 0.00 0.00 2.01
5421 6767 5.045724 TCGGGGCCTACAAAGTCTTAATTAA 60.046 40.000 0.84 0.00 0.00 1.40
5422 6768 4.470664 TCGGGGCCTACAAAGTCTTAATTA 59.529 41.667 0.84 0.00 0.00 1.40
5423 6769 3.264964 TCGGGGCCTACAAAGTCTTAATT 59.735 43.478 0.84 0.00 0.00 1.40
5424 6770 2.841881 TCGGGGCCTACAAAGTCTTAAT 59.158 45.455 0.84 0.00 0.00 1.40
5425 6771 2.235402 CTCGGGGCCTACAAAGTCTTAA 59.765 50.000 0.84 0.00 0.00 1.85
5426 6772 1.829222 CTCGGGGCCTACAAAGTCTTA 59.171 52.381 0.84 0.00 0.00 2.10
5427 6773 0.613777 CTCGGGGCCTACAAAGTCTT 59.386 55.000 0.84 0.00 0.00 3.01
5428 6774 0.252103 TCTCGGGGCCTACAAAGTCT 60.252 55.000 0.84 0.00 0.00 3.24
5429 6775 0.175989 CTCTCGGGGCCTACAAAGTC 59.824 60.000 0.84 0.00 0.00 3.01
5430 6776 1.900545 GCTCTCGGGGCCTACAAAGT 61.901 60.000 0.84 0.00 0.00 2.66
5431 6777 1.153349 GCTCTCGGGGCCTACAAAG 60.153 63.158 0.84 0.00 0.00 2.77
5432 6778 1.612442 AGCTCTCGGGGCCTACAAA 60.612 57.895 0.84 0.00 0.00 2.83
5433 6779 2.038975 AGCTCTCGGGGCCTACAA 59.961 61.111 0.84 0.00 0.00 2.41
5434 6780 2.759973 CAGCTCTCGGGGCCTACA 60.760 66.667 0.84 0.00 0.00 2.74
5435 6781 4.228567 GCAGCTCTCGGGGCCTAC 62.229 72.222 0.84 0.00 0.00 3.18
5436 6782 2.656698 TATGCAGCTCTCGGGGCCTA 62.657 60.000 0.84 0.00 0.00 3.93
5438 6784 3.550431 TATGCAGCTCTCGGGGCC 61.550 66.667 0.00 0.00 0.00 5.80
5439 6785 2.280457 GTATGCAGCTCTCGGGGC 60.280 66.667 0.00 0.00 0.00 5.80
5440 6786 2.028190 CGTATGCAGCTCTCGGGG 59.972 66.667 0.00 0.00 0.00 5.73
5441 6787 2.028190 CCGTATGCAGCTCTCGGG 59.972 66.667 12.55 0.00 37.92 5.14
5442 6788 2.028190 CCCGTATGCAGCTCTCGG 59.972 66.667 13.16 13.16 40.72 4.63
5443 6789 2.028190 CCCCGTATGCAGCTCTCG 59.972 66.667 0.00 0.00 0.00 4.04
5444 6790 2.280457 GCCCCGTATGCAGCTCTC 60.280 66.667 0.00 0.00 0.00 3.20
5445 6791 3.866582 GGCCCCGTATGCAGCTCT 61.867 66.667 0.00 0.00 0.00 4.09
5452 6798 4.823419 TTGACGCGGCCCCGTATG 62.823 66.667 16.84 0.00 42.24 2.39
5453 6799 4.085204 TTTGACGCGGCCCCGTAT 62.085 61.111 16.84 0.00 42.24 3.06
5454 6800 4.745751 CTTTGACGCGGCCCCGTA 62.746 66.667 16.84 0.00 42.24 4.02
5457 6803 3.733960 GAACTTTGACGCGGCCCC 61.734 66.667 10.82 0.00 0.00 5.80
5458 6804 3.733960 GGAACTTTGACGCGGCCC 61.734 66.667 10.82 0.00 0.00 5.80
5459 6805 4.084888 CGGAACTTTGACGCGGCC 62.085 66.667 10.82 0.56 0.00 6.13
5460 6806 3.343421 ACGGAACTTTGACGCGGC 61.343 61.111 12.47 8.67 0.00 6.53
5461 6807 2.241880 ACACGGAACTTTGACGCGG 61.242 57.895 12.47 0.00 0.00 6.46
5462 6808 1.083657 CACACGGAACTTTGACGCG 60.084 57.895 3.53 3.53 0.00 6.01
5463 6809 0.653636 TTCACACGGAACTTTGACGC 59.346 50.000 0.00 0.00 0.00 5.19
5464 6810 2.034001 GTCTTCACACGGAACTTTGACG 60.034 50.000 0.00 0.00 0.00 4.35
5465 6811 2.287103 GGTCTTCACACGGAACTTTGAC 59.713 50.000 0.00 0.00 0.00 3.18
5466 6812 2.557317 GGTCTTCACACGGAACTTTGA 58.443 47.619 0.00 0.00 0.00 2.69
5467 6813 1.602377 GGGTCTTCACACGGAACTTTG 59.398 52.381 0.00 0.00 0.00 2.77
5468 6814 1.489230 AGGGTCTTCACACGGAACTTT 59.511 47.619 0.00 0.00 0.00 2.66
5469 6815 1.129058 AGGGTCTTCACACGGAACTT 58.871 50.000 0.00 0.00 0.00 2.66
5470 6816 1.129058 AAGGGTCTTCACACGGAACT 58.871 50.000 0.00 0.00 0.00 3.01
5471 6817 1.226746 CAAGGGTCTTCACACGGAAC 58.773 55.000 0.00 0.00 0.00 3.62
5472 6818 0.534203 GCAAGGGTCTTCACACGGAA 60.534 55.000 0.00 0.00 0.00 4.30
5473 6819 1.070786 GCAAGGGTCTTCACACGGA 59.929 57.895 0.00 0.00 0.00 4.69
5474 6820 1.966451 GGCAAGGGTCTTCACACGG 60.966 63.158 0.00 0.00 0.00 4.94
5475 6821 2.317609 CGGCAAGGGTCTTCACACG 61.318 63.158 0.00 0.00 0.00 4.49
5476 6822 1.966451 CCGGCAAGGGTCTTCACAC 60.966 63.158 0.00 0.00 35.97 3.82
5477 6823 1.990160 AACCGGCAAGGGTCTTCACA 61.990 55.000 0.00 0.00 46.96 3.58
5478 6824 1.228154 AACCGGCAAGGGTCTTCAC 60.228 57.895 0.00 0.00 46.96 3.18
5479 6825 1.228124 CAACCGGCAAGGGTCTTCA 60.228 57.895 0.00 0.00 46.96 3.02
5480 6826 1.971695 CCAACCGGCAAGGGTCTTC 60.972 63.158 0.00 0.00 46.96 2.87
5481 6827 2.115266 CCAACCGGCAAGGGTCTT 59.885 61.111 0.00 0.00 46.96 3.01
5482 6828 2.852075 TCCAACCGGCAAGGGTCT 60.852 61.111 0.00 0.00 46.96 3.85
5483 6829 2.671963 GTCCAACCGGCAAGGGTC 60.672 66.667 0.00 0.00 46.96 4.46
5484 6830 3.175710 AGTCCAACCGGCAAGGGT 61.176 61.111 0.00 0.00 46.96 4.34
5485 6831 2.359975 GAGTCCAACCGGCAAGGG 60.360 66.667 0.00 0.00 46.96 3.95
5487 6833 0.036010 ATCTGAGTCCAACCGGCAAG 60.036 55.000 0.00 0.00 0.00 4.01
5488 6834 0.321564 CATCTGAGTCCAACCGGCAA 60.322 55.000 0.00 0.00 0.00 4.52
5489 6835 1.296392 CATCTGAGTCCAACCGGCA 59.704 57.895 0.00 0.00 0.00 5.69
5490 6836 1.450312 CCATCTGAGTCCAACCGGC 60.450 63.158 0.00 0.00 0.00 6.13
5491 6837 1.450312 GCCATCTGAGTCCAACCGG 60.450 63.158 0.00 0.00 0.00 5.28
5492 6838 0.460987 GAGCCATCTGAGTCCAACCG 60.461 60.000 0.00 0.00 0.00 4.44
5493 6839 0.107459 GGAGCCATCTGAGTCCAACC 60.107 60.000 0.00 0.00 0.00 3.77
5494 6840 0.615331 TGGAGCCATCTGAGTCCAAC 59.385 55.000 0.00 0.00 36.11 3.77
5495 6841 1.003580 GTTGGAGCCATCTGAGTCCAA 59.996 52.381 8.63 8.63 44.95 3.53
5496 6842 0.615331 GTTGGAGCCATCTGAGTCCA 59.385 55.000 0.00 0.00 37.31 4.02
5497 6843 0.460987 CGTTGGAGCCATCTGAGTCC 60.461 60.000 0.00 0.00 0.00 3.85
5498 6844 0.460987 CCGTTGGAGCCATCTGAGTC 60.461 60.000 0.00 0.00 0.00 3.36
5499 6845 1.599047 CCGTTGGAGCCATCTGAGT 59.401 57.895 0.00 0.00 0.00 3.41
5500 6846 1.817099 GCCGTTGGAGCCATCTGAG 60.817 63.158 0.00 0.00 0.00 3.35
5501 6847 2.244117 GAGCCGTTGGAGCCATCTGA 62.244 60.000 0.00 0.00 0.00 3.27
5502 6848 1.817099 GAGCCGTTGGAGCCATCTG 60.817 63.158 0.00 0.00 0.00 2.90
5503 6849 2.586792 GAGCCGTTGGAGCCATCT 59.413 61.111 0.00 0.00 0.00 2.90
5504 6850 2.514824 GGAGCCGTTGGAGCCATC 60.515 66.667 0.00 0.00 0.00 3.51
5505 6851 3.011517 AGGAGCCGTTGGAGCCAT 61.012 61.111 0.00 0.00 0.00 4.40
5506 6852 4.020617 CAGGAGCCGTTGGAGCCA 62.021 66.667 0.00 0.00 0.00 4.75
5507 6853 2.656069 TACAGGAGCCGTTGGAGCC 61.656 63.158 0.00 0.00 0.00 4.70
5508 6854 1.448013 GTACAGGAGCCGTTGGAGC 60.448 63.158 0.00 0.00 0.00 4.70
5509 6855 0.108615 CAGTACAGGAGCCGTTGGAG 60.109 60.000 0.00 0.00 0.00 3.86
5510 6856 0.830444 ACAGTACAGGAGCCGTTGGA 60.830 55.000 0.00 0.00 0.00 3.53
5511 6857 0.389948 GACAGTACAGGAGCCGTTGG 60.390 60.000 0.00 0.00 0.00 3.77
5512 6858 0.603569 AGACAGTACAGGAGCCGTTG 59.396 55.000 0.00 0.00 0.00 4.10
5513 6859 0.603569 CAGACAGTACAGGAGCCGTT 59.396 55.000 0.00 0.00 0.00 4.44
5514 6860 1.251527 CCAGACAGTACAGGAGCCGT 61.252 60.000 0.00 0.00 0.00 5.68
5515 6861 1.513158 CCAGACAGTACAGGAGCCG 59.487 63.158 0.00 0.00 0.00 5.52
5516 6862 1.219393 GCCAGACAGTACAGGAGCC 59.781 63.158 0.00 0.00 0.00 4.70
5517 6863 1.153745 CGCCAGACAGTACAGGAGC 60.154 63.158 0.00 0.00 0.00 4.70
5518 6864 0.171455 GTCGCCAGACAGTACAGGAG 59.829 60.000 0.00 0.00 46.32 3.69
5519 6865 2.264124 GTCGCCAGACAGTACAGGA 58.736 57.895 0.00 0.00 46.32 3.86
5520 6866 4.891566 GTCGCCAGACAGTACAGG 57.108 61.111 0.00 0.00 46.32 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.