Multiple sequence alignment - TraesCS6D01G237100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G237100 chr6D 100.000 5725 0 0 1 5725 335340700 335334976 0.000000e+00 10573
1 TraesCS6D01G237100 chr6D 96.053 76 3 0 2817 2892 368365285 368365360 2.170000e-24 124
2 TraesCS6D01G237100 chr6A 92.535 2880 102 33 4 2820 474988439 474985610 0.000000e+00 4023
3 TraesCS6D01G237100 chr6A 91.006 1401 76 25 2887 4251 474985614 474984228 0.000000e+00 1844
4 TraesCS6D01G237100 chr6A 95.080 1057 39 5 4240 5284 474982911 474981856 0.000000e+00 1652
5 TraesCS6D01G237100 chr6A 81.955 266 35 10 5285 5544 474981696 474981438 4.490000e-51 213
6 TraesCS6D01G237100 chr6A 83.929 168 18 2 5546 5713 474981330 474981172 9.940000e-33 152
7 TraesCS6D01G237100 chr6A 96.053 76 3 0 2817 2892 509279058 509279133 2.170000e-24 124
8 TraesCS6D01G237100 chr6B 94.337 2490 86 16 347 2820 485300986 485303436 0.000000e+00 3766
9 TraesCS6D01G237100 chr6B 93.783 1528 54 15 3854 5349 485304456 485305974 0.000000e+00 2257
10 TraesCS6D01G237100 chr6B 93.672 964 50 6 2887 3845 485303432 485304389 0.000000e+00 1432
11 TraesCS6D01G237100 chr6B 90.179 336 21 5 1 331 485300671 485300999 1.470000e-115 427
12 TraesCS6D01G237100 chr6B 94.937 79 4 0 2817 2895 553057202 553057124 2.170000e-24 124
13 TraesCS6D01G237100 chr2D 86.567 335 45 0 1341 1675 510615429 510615763 2.520000e-98 370
14 TraesCS6D01G237100 chr2D 95.000 80 3 1 2817 2896 376701261 376701183 2.170000e-24 124
15 TraesCS6D01G237100 chr2D 92.405 79 3 3 2811 2889 327614902 327614827 6.060000e-20 110
16 TraesCS6D01G237100 chr2B 86.486 333 45 0 1341 1673 600000036 600000368 3.260000e-97 366
17 TraesCS6D01G237100 chr2A 86.486 333 45 0 1341 1673 654364940 654365272 3.260000e-97 366
18 TraesCS6D01G237100 chr2A 93.671 79 2 2 2816 2892 704774894 704774817 1.300000e-21 115
19 TraesCS6D01G237100 chr1A 94.595 74 4 0 2816 2889 440885275 440885348 1.300000e-21 115
20 TraesCS6D01G237100 chr3D 92.500 80 3 1 2817 2893 169888215 169888136 1.690000e-20 111
21 TraesCS6D01G237100 chr5D 88.764 89 8 2 2817 2904 543223110 543223197 2.180000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G237100 chr6D 335334976 335340700 5724 True 10573.0 10573 100.00000 1 5725 1 chr6D.!!$R1 5724
1 TraesCS6D01G237100 chr6A 474981172 474988439 7267 True 1576.8 4023 88.90100 4 5713 5 chr6A.!!$R1 5709
2 TraesCS6D01G237100 chr6B 485300671 485305974 5303 False 1970.5 3766 92.99275 1 5349 4 chr6B.!!$F1 5348

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 244 0.335019 TGGGACAGCCTAGCTAGTCA 59.665 55.0 19.31 3.73 36.40 3.41 F
760 789 0.868406 GCGGCAATAATTCTCCTCCG 59.132 55.0 0.00 0.00 38.51 4.63 F
1486 1524 0.958382 TCACCGAGATTTTTGGCCGG 60.958 55.0 0.00 0.00 45.09 6.13 F
2268 2320 0.798776 CGCTGGACCTCATGTTTGTC 59.201 55.0 0.00 0.00 0.00 3.18 F
3411 3495 0.320683 AACGTTAGGGTTGCGGTACC 60.321 55.0 0.00 0.16 37.47 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1381 1419 1.594833 GTCTGCCGACACCACCATA 59.405 57.895 3.07 0.0 39.98 2.74 R
2268 2320 1.226831 GAAGCTCGCGAAGAGGAGG 60.227 63.158 11.33 0.0 46.91 4.30 R
3389 3472 0.035739 ACCGCAACCCTAACGTTCAT 59.964 50.000 2.82 0.0 0.00 2.57 R
3461 3553 0.844661 TGAAGCTACCCACCACCCAT 60.845 55.000 0.00 0.0 0.00 4.00 R
5018 6543 0.106918 TTGGGTTGTGTGGTGGAGTC 60.107 55.000 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.459606 GACGTCTTACTAGATCGATGCAG 58.540 47.826 8.70 1.53 32.74 4.41
106 108 0.861837 CAAGTGTTGACTCGCTGTCC 59.138 55.000 6.06 0.00 44.75 4.02
200 204 5.411669 CGCCAGGTGTTCTTAGTTTCTTATT 59.588 40.000 0.00 0.00 0.00 1.40
201 205 6.592607 CGCCAGGTGTTCTTAGTTTCTTATTA 59.407 38.462 0.00 0.00 0.00 0.98
202 206 7.280205 CGCCAGGTGTTCTTAGTTTCTTATTAT 59.720 37.037 0.00 0.00 0.00 1.28
236 244 0.335019 TGGGACAGCCTAGCTAGTCA 59.665 55.000 19.31 3.73 36.40 3.41
247 255 4.202202 GCCTAGCTAGTCATGACAGTTCAT 60.202 45.833 27.02 8.37 43.80 2.57
282 296 9.567776 TTTCTTCCTAATACAACAGACATTTGA 57.432 29.630 0.00 0.00 0.00 2.69
283 297 8.547967 TCTTCCTAATACAACAGACATTTGAC 57.452 34.615 0.00 0.00 0.00 3.18
336 355 3.425422 GCCATCTGCATTCCCGTC 58.575 61.111 0.00 0.00 40.77 4.79
337 356 1.451927 GCCATCTGCATTCCCGTCA 60.452 57.895 0.00 0.00 40.77 4.35
338 357 1.031571 GCCATCTGCATTCCCGTCAA 61.032 55.000 0.00 0.00 40.77 3.18
339 358 1.462616 CCATCTGCATTCCCGTCAAA 58.537 50.000 0.00 0.00 0.00 2.69
340 359 1.818060 CCATCTGCATTCCCGTCAAAA 59.182 47.619 0.00 0.00 0.00 2.44
341 360 2.230992 CCATCTGCATTCCCGTCAAAAA 59.769 45.455 0.00 0.00 0.00 1.94
397 417 2.774234 TCCAACCAAAAGGCAAAATGGA 59.226 40.909 5.03 0.00 36.75 3.41
444 468 2.414559 CGAAACCTAAGTGCATGGCTTG 60.415 50.000 0.00 0.00 0.00 4.01
445 469 2.292828 AACCTAAGTGCATGGCTTGT 57.707 45.000 2.12 0.00 0.00 3.16
446 470 1.538047 ACCTAAGTGCATGGCTTGTG 58.462 50.000 2.12 0.00 0.00 3.33
447 471 1.202927 ACCTAAGTGCATGGCTTGTGT 60.203 47.619 2.12 0.00 0.00 3.72
448 472 2.039746 ACCTAAGTGCATGGCTTGTGTA 59.960 45.455 2.12 0.00 0.00 2.90
449 473 3.081061 CCTAAGTGCATGGCTTGTGTAA 58.919 45.455 2.12 0.00 0.00 2.41
450 474 3.696051 CCTAAGTGCATGGCTTGTGTAAT 59.304 43.478 2.12 0.00 0.00 1.89
451 475 4.881273 CCTAAGTGCATGGCTTGTGTAATA 59.119 41.667 2.12 0.00 0.00 0.98
452 476 5.532406 CCTAAGTGCATGGCTTGTGTAATAT 59.468 40.000 2.12 0.00 0.00 1.28
460 484 7.093988 TGCATGGCTTGTGTAATATAGTGTTTT 60.094 33.333 2.12 0.00 0.00 2.43
485 509 5.192927 CCTAATCACCTAACAGATGCCAAA 58.807 41.667 0.00 0.00 0.00 3.28
731 760 5.361427 TCCGTCAAAAAGATACACACTTGA 58.639 37.500 0.00 0.00 0.00 3.02
760 789 0.868406 GCGGCAATAATTCTCCTCCG 59.132 55.000 0.00 0.00 38.51 4.63
765 794 3.496870 GGCAATAATTCTCCTCCGTCCAT 60.497 47.826 0.00 0.00 0.00 3.41
783 812 3.576550 TCCATTTGTTTAAGTTCCTGCCC 59.423 43.478 0.00 0.00 0.00 5.36
925 954 3.443045 CACCGCCATTGCCCTGTC 61.443 66.667 0.00 0.00 0.00 3.51
926 955 4.740822 ACCGCCATTGCCCTGTCC 62.741 66.667 0.00 0.00 0.00 4.02
929 958 2.037847 GCCATTGCCCTGTCCCTT 59.962 61.111 0.00 0.00 0.00 3.95
933 962 0.967380 CATTGCCCTGTCCCTTGACC 60.967 60.000 0.00 0.00 41.01 4.02
948 977 6.271159 GTCCCTTGACCTGATCTAATAGGATT 59.729 42.308 3.90 0.00 37.52 3.01
963 992 8.894731 TCTAATAGGATTGATCGATACAGTAGC 58.105 37.037 7.96 0.00 0.00 3.58
964 993 4.792521 AGGATTGATCGATACAGTAGCC 57.207 45.455 7.96 0.00 0.00 3.93
1028 1057 1.146982 ACTATGGGTTGTTGCCTTGGT 59.853 47.619 0.00 0.00 0.00 3.67
1038 1067 3.443045 GCCTTGGTCATGGCCGTG 61.443 66.667 19.62 19.62 43.54 4.94
1158 1187 2.433239 GTTCTTCGCCCCTAATCCTACA 59.567 50.000 0.00 0.00 0.00 2.74
1335 1372 1.612950 TGACATTGATTGGGTGTGTGC 59.387 47.619 0.00 0.00 0.00 4.57
1486 1524 0.958382 TCACCGAGATTTTTGGCCGG 60.958 55.000 0.00 0.00 45.09 6.13
1763 1805 3.340928 CTGATGTGCATCTCCTGTTTGA 58.659 45.455 12.64 0.00 38.60 2.69
1853 1895 2.028567 CGAGAGCCTGAGGAAGAACTTT 60.029 50.000 0.65 0.00 0.00 2.66
1951 1999 1.731613 CATGCGCACAAAGCCACAG 60.732 57.895 14.90 0.00 41.38 3.66
2083 2135 1.902508 TCTCTTCCTGGAACGCTTGAT 59.097 47.619 4.68 0.00 0.00 2.57
2214 2266 1.874231 GACGTGATGATCGAGGAGCTA 59.126 52.381 0.00 0.00 0.00 3.32
2244 2296 3.812019 CCCGTCCTCACCGAGACG 61.812 72.222 5.61 5.61 35.08 4.18
2265 2317 1.675641 GGCGCTGGACCTCATGTTT 60.676 57.895 7.64 0.00 0.00 2.83
2268 2320 0.798776 CGCTGGACCTCATGTTTGTC 59.201 55.000 0.00 0.00 0.00 3.18
2302 2354 1.067495 GCTTCGAGACTACTGCCTTGT 60.067 52.381 0.00 0.00 0.00 3.16
2446 2500 1.135139 CAGCGGCAAGAACTAGCTAGA 59.865 52.381 27.45 0.00 36.28 2.43
2475 2529 7.925483 AGCTACTTGTGCAAAATAACAATTGAA 59.075 29.630 13.59 0.00 0.00 2.69
2820 2900 7.009815 CCACGAGAGAGAAGATATATCGTACTC 59.990 44.444 19.39 19.39 39.65 2.59
2821 2901 7.009815 CACGAGAGAGAAGATATATCGTACTCC 59.990 44.444 21.45 16.39 39.65 3.85
2822 2902 6.477688 CGAGAGAGAAGATATATCGTACTCCC 59.522 46.154 21.45 15.47 0.00 4.30
2823 2903 7.504926 AGAGAGAAGATATATCGTACTCCCT 57.495 40.000 21.45 16.76 0.00 4.20
2824 2904 7.562135 AGAGAGAAGATATATCGTACTCCCTC 58.438 42.308 21.45 14.66 0.00 4.30
2825 2905 7.402071 AGAGAGAAGATATATCGTACTCCCTCT 59.598 40.741 21.45 17.65 0.00 3.69
2826 2906 7.335627 AGAGAAGATATATCGTACTCCCTCTG 58.664 42.308 21.45 0.00 0.00 3.35
2827 2907 7.023171 AGAAGATATATCGTACTCCCTCTGT 57.977 40.000 7.08 0.00 0.00 3.41
2828 2908 8.148437 AGAAGATATATCGTACTCCCTCTGTA 57.852 38.462 7.08 0.00 0.00 2.74
2829 2909 8.604184 AGAAGATATATCGTACTCCCTCTGTAA 58.396 37.037 7.08 0.00 0.00 2.41
2830 2910 9.228949 GAAGATATATCGTACTCCCTCTGTAAA 57.771 37.037 7.08 0.00 0.00 2.01
2831 2911 8.795842 AGATATATCGTACTCCCTCTGTAAAG 57.204 38.462 7.08 0.00 0.00 1.85
2832 2912 8.604184 AGATATATCGTACTCCCTCTGTAAAGA 58.396 37.037 7.08 0.00 0.00 2.52
2833 2913 9.228949 GATATATCGTACTCCCTCTGTAAAGAA 57.771 37.037 0.00 0.00 0.00 2.52
2834 2914 7.893124 ATATCGTACTCCCTCTGTAAAGAAA 57.107 36.000 0.00 0.00 0.00 2.52
2835 2915 6.793505 ATCGTACTCCCTCTGTAAAGAAAT 57.206 37.500 0.00 0.00 0.00 2.17
2836 2916 7.893124 ATCGTACTCCCTCTGTAAAGAAATA 57.107 36.000 0.00 0.00 0.00 1.40
2837 2917 7.893124 TCGTACTCCCTCTGTAAAGAAATAT 57.107 36.000 0.00 0.00 0.00 1.28
2838 2918 8.985315 TCGTACTCCCTCTGTAAAGAAATATA 57.015 34.615 0.00 0.00 0.00 0.86
2839 2919 9.412460 TCGTACTCCCTCTGTAAAGAAATATAA 57.588 33.333 0.00 0.00 0.00 0.98
2840 2920 9.680315 CGTACTCCCTCTGTAAAGAAATATAAG 57.320 37.037 0.00 0.00 0.00 1.73
2843 2923 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
2844 2924 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
2845 2925 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
2846 2926 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
2847 2927 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
2883 2963 7.639162 ACGCTCTTATATTTCTTTACGGATG 57.361 36.000 0.00 0.00 0.00 3.51
2884 2964 6.645415 ACGCTCTTATATTTCTTTACGGATGG 59.355 38.462 0.00 0.00 0.00 3.51
2885 2965 6.866770 CGCTCTTATATTTCTTTACGGATGGA 59.133 38.462 0.00 0.00 0.00 3.41
2949 3032 5.915758 CGAGATCGAGGAAGAAATTAACGAT 59.084 40.000 0.00 0.00 43.02 3.73
3125 3208 3.063510 ACATTGAGTGAGTGGTGGATG 57.936 47.619 0.00 0.00 0.00 3.51
3126 3209 2.639347 ACATTGAGTGAGTGGTGGATGA 59.361 45.455 0.00 0.00 0.00 2.92
3130 3213 3.440127 TGAGTGAGTGGTGGATGACATA 58.560 45.455 0.00 0.00 0.00 2.29
3145 3228 8.632679 GTGGATGACATACCATGTTTGAATAAT 58.367 33.333 9.06 0.00 45.03 1.28
3146 3229 9.859152 TGGATGACATACCATGTTTGAATAATA 57.141 29.630 0.00 0.00 45.03 0.98
3271 3354 4.648626 TGCCCTCCAGCAGTGCAC 62.649 66.667 19.20 9.40 38.00 4.57
3272 3355 4.341783 GCCCTCCAGCAGTGCACT 62.342 66.667 15.25 15.25 0.00 4.40
3292 3375 6.826231 TGCACTTAAATCCCGAAATCTATGAA 59.174 34.615 0.00 0.00 0.00 2.57
3298 3381 2.364324 TCCCGAAATCTATGAAGACCCG 59.636 50.000 0.00 0.00 33.57 5.28
3310 3393 1.808343 GAAGACCCGTTGGCGTTTAAT 59.192 47.619 0.00 0.00 36.15 1.40
3389 3472 4.379813 GCTCATTTCATCTTGGAAGCGAAA 60.380 41.667 0.00 6.38 34.19 3.46
3411 3495 0.320683 AACGTTAGGGTTGCGGTACC 60.321 55.000 0.00 0.16 37.47 3.34
3428 3512 0.460284 ACCCGCGCTGAATCTAACTG 60.460 55.000 5.56 0.00 0.00 3.16
3450 3542 1.526686 GCATGGCCCATCATCGACA 60.527 57.895 0.00 0.00 0.00 4.35
3451 3543 1.102809 GCATGGCCCATCATCGACAA 61.103 55.000 0.00 0.00 0.00 3.18
3539 3634 1.468520 GTGCCATGCAAACGACTACAT 59.531 47.619 0.00 0.00 41.47 2.29
3578 3680 7.119846 CCCTAAGTTTGACCACTCTAATCAAAG 59.880 40.741 0.00 0.00 41.65 2.77
3587 3689 8.198109 TGACCACTCTAATCAAAGTAAGCTATC 58.802 37.037 0.00 0.00 0.00 2.08
3588 3690 8.079211 ACCACTCTAATCAAAGTAAGCTATCA 57.921 34.615 0.00 0.00 0.00 2.15
3589 3691 8.709308 ACCACTCTAATCAAAGTAAGCTATCAT 58.291 33.333 0.00 0.00 0.00 2.45
3625 3741 1.750399 AATAGCAACAGCCAGGCCG 60.750 57.895 8.22 0.00 0.00 6.13
3680 3796 6.147985 GTCTCTGAATTTCTCCCAAGTTGTAC 59.852 42.308 1.45 0.00 0.00 2.90
3761 3877 0.598419 GAAGCCAAAGTGCACTTGGC 60.598 55.000 38.43 38.43 43.77 4.52
3775 3891 3.596214 CACTTGGCGTAGTGGTTATCTT 58.404 45.455 10.70 0.00 41.43 2.40
3796 3912 3.669939 ATTAGCCAGCATTAGGGTTGT 57.330 42.857 0.00 0.00 38.04 3.32
3806 3922 3.559171 GCATTAGGGTTGTCAGAGAACCA 60.559 47.826 26.60 10.49 44.17 3.67
3868 4042 7.464358 AGAGTAGCATTTTTACTGTATTTGCG 58.536 34.615 0.00 0.00 31.74 4.85
3892 4066 4.588951 TGGGATCATGACTAGCTCGTAATT 59.411 41.667 0.00 0.00 0.00 1.40
4012 4192 5.282510 CAGAAGTCGAGTTTCTGTTAGTGT 58.717 41.667 22.51 0.00 44.05 3.55
4013 4193 6.436261 CAGAAGTCGAGTTTCTGTTAGTGTA 58.564 40.000 22.51 0.00 44.05 2.90
4107 4289 2.355837 GTGCGCGGTCAAGTCAGA 60.356 61.111 8.83 0.00 0.00 3.27
4141 4323 8.562892 GCAGCATACTGTCAAATGATACTTAAT 58.437 33.333 0.00 0.00 46.30 1.40
4472 5991 2.049433 CGGTTCTGCGTCGGAACT 60.049 61.111 22.25 0.00 45.80 3.01
4587 6106 6.929049 TGGACACTGTTTCACTATAAGAACTG 59.071 38.462 0.00 0.00 0.00 3.16
4617 6136 4.468510 TGAAATCGGCCTTCTCTAACCTTA 59.531 41.667 0.00 0.00 0.00 2.69
4751 6270 0.464036 TGTTTGTCGGCTCAGTCTGT 59.536 50.000 0.00 0.00 0.00 3.41
4767 6286 1.599071 TCTGTCTGTTCGCAGCAAAAG 59.401 47.619 0.00 0.00 44.62 2.27
4963 6483 9.554724 GTGTGTTAATTAGGTAACATTGTCATG 57.445 33.333 1.48 0.00 43.82 3.07
4974 6494 7.615365 AGGTAACATTGTCATGGTTACAATCAT 59.385 33.333 20.21 9.53 43.84 2.45
4990 6515 0.040058 TCATGCAAGGCCAGTTCCAT 59.960 50.000 5.01 0.00 0.00 3.41
5018 6543 3.741476 GGCGCTGTCCCTTGCAAG 61.741 66.667 19.93 19.93 0.00 4.01
5058 6583 7.158021 CCCAAGCAAAAGGTAATTGTTGATTA 58.842 34.615 0.00 0.00 29.17 1.75
5101 6626 0.524414 TCCACATGGTCTACGTGTCG 59.476 55.000 0.00 0.00 46.14 4.35
5107 6632 1.154197 TGGTCTACGTGTCGACTCAG 58.846 55.000 17.92 11.72 0.00 3.35
5195 6728 9.534565 GTACTTGTAAATGATTCTCAGCATCTA 57.465 33.333 0.00 0.00 0.00 1.98
5237 6770 9.881529 AACATTGAATACAACATTTCATTTTGC 57.118 25.926 0.00 0.00 38.90 3.68
5240 6773 8.883954 TTGAATACAACATTTCATTTTGCTGA 57.116 26.923 0.00 0.00 32.27 4.26
5247 6780 8.460428 ACAACATTTCATTTTGCTGAAAAACAT 58.540 25.926 3.31 0.00 45.45 2.71
5281 6970 7.816513 TCCGAGCTCTTCTATTTCATTATCATG 59.183 37.037 12.85 0.00 0.00 3.07
5282 6971 7.816513 CCGAGCTCTTCTATTTCATTATCATGA 59.183 37.037 12.85 0.00 37.67 3.07
5381 7074 8.455682 ACTAGAAAACGAAATGAAACAACAAGA 58.544 29.630 0.00 0.00 0.00 3.02
5382 7075 7.740519 AGAAAACGAAATGAAACAACAAGAG 57.259 32.000 0.00 0.00 0.00 2.85
5383 7076 6.751888 AGAAAACGAAATGAAACAACAAGAGG 59.248 34.615 0.00 0.00 0.00 3.69
5384 7077 4.568152 ACGAAATGAAACAACAAGAGGG 57.432 40.909 0.00 0.00 0.00 4.30
5385 7078 3.317993 ACGAAATGAAACAACAAGAGGGG 59.682 43.478 0.00 0.00 0.00 4.79
5409 7102 1.867363 GGGGGCTACTCTTCTTCAGA 58.133 55.000 0.00 0.00 0.00 3.27
5410 7103 1.483004 GGGGGCTACTCTTCTTCAGAC 59.517 57.143 0.00 0.00 0.00 3.51
5411 7104 2.462723 GGGGCTACTCTTCTTCAGACT 58.537 52.381 0.00 0.00 0.00 3.24
5415 7108 5.309638 GGGCTACTCTTCTTCAGACTTTTT 58.690 41.667 0.00 0.00 0.00 1.94
5440 7133 8.725405 TTTTCCGCACTATAATGAATAGTCAA 57.275 30.769 0.00 0.00 46.50 3.18
5441 7134 8.725405 TTTCCGCACTATAATGAATAGTCAAA 57.275 30.769 0.00 0.00 46.50 2.69
5477 7172 9.910267 AAAATGATACAGCATAGGCATATATCA 57.090 29.630 17.09 17.09 44.61 2.15
5520 7217 6.605594 ACAAGTGAAAAGGTTCAAGGTTGATA 59.394 34.615 11.47 0.00 45.29 2.15
5524 7221 8.704668 AGTGAAAAGGTTCAAGGTTGATAAAAT 58.295 29.630 0.00 0.00 45.29 1.82
5530 7227 8.193953 AGGTTCAAGGTTGATAAAATCACAAT 57.806 30.769 0.00 0.00 39.39 2.71
5531 7228 8.306761 AGGTTCAAGGTTGATAAAATCACAATC 58.693 33.333 0.00 0.00 39.39 2.67
5532 7229 8.087750 GGTTCAAGGTTGATAAAATCACAATCA 58.912 33.333 0.00 0.00 39.39 2.57
5546 7243 6.822667 ATCACAATCAAGTTAACAGATGCA 57.177 33.333 8.61 0.00 0.00 3.96
5547 7244 6.822667 TCACAATCAAGTTAACAGATGCAT 57.177 33.333 8.61 0.00 0.00 3.96
5549 7246 6.430616 TCACAATCAAGTTAACAGATGCATCA 59.569 34.615 27.81 4.83 0.00 3.07
5564 7367 3.578688 TGCATCATCTAATGATCCGTCG 58.421 45.455 0.00 0.00 46.62 5.12
5578 7381 4.298009 GTCGAGGTGAGACGGAGA 57.702 61.111 0.00 0.00 0.00 3.71
5594 7397 6.516718 AGACGGAGATAACATCAAACCTATG 58.483 40.000 0.00 0.00 0.00 2.23
5595 7398 6.323996 AGACGGAGATAACATCAAACCTATGA 59.676 38.462 0.00 0.00 0.00 2.15
5596 7399 7.015682 AGACGGAGATAACATCAAACCTATGAT 59.984 37.037 0.00 0.00 40.64 2.45
5597 7400 7.509546 ACGGAGATAACATCAAACCTATGATT 58.490 34.615 0.00 0.00 37.96 2.57
5599 7402 9.489084 CGGAGATAACATCAAACCTATGATTTA 57.511 33.333 0.00 0.00 37.96 1.40
5605 7408 7.510549 ACATCAAACCTATGATTTAATCCGG 57.489 36.000 0.00 0.00 37.96 5.14
5606 7409 6.490040 ACATCAAACCTATGATTTAATCCGGG 59.510 38.462 0.00 4.78 37.96 5.73
5607 7410 5.381757 TCAAACCTATGATTTAATCCGGGG 58.618 41.667 0.00 4.46 0.00 5.73
5608 7411 3.434940 ACCTATGATTTAATCCGGGGC 57.565 47.619 0.00 0.00 0.00 5.80
5609 7412 2.986728 ACCTATGATTTAATCCGGGGCT 59.013 45.455 0.00 0.00 0.00 5.19
5610 7413 3.244911 ACCTATGATTTAATCCGGGGCTG 60.245 47.826 0.00 0.00 0.00 4.85
5623 7426 1.341531 CGGGGCTGGAGATACAACTAG 59.658 57.143 0.00 0.00 0.00 2.57
5628 7431 3.181474 GGCTGGAGATACAACTAGTCCAC 60.181 52.174 0.00 0.00 33.65 4.02
5670 7473 4.724399 TGGTTCTCACTTTTGGCATCTAA 58.276 39.130 0.00 0.00 0.00 2.10
5673 7476 7.118723 TGGTTCTCACTTTTGGCATCTAATAT 58.881 34.615 0.00 0.00 0.00 1.28
5675 7478 7.420800 GTTCTCACTTTTGGCATCTAATATGG 58.579 38.462 0.00 0.00 0.00 2.74
5681 7484 4.640771 TTGGCATCTAATATGGACTCCC 57.359 45.455 0.00 0.00 0.00 4.30
5695 7498 5.116084 TGGACTCCCTCCATTCTAAATTG 57.884 43.478 0.00 0.00 44.99 2.32
5702 7505 7.895429 ACTCCCTCCATTCTAAATTGATTGAAA 59.105 33.333 0.00 0.00 0.00 2.69
5720 7523 9.970395 TGATTGAAATTATAGCATTCCATTGTC 57.030 29.630 0.00 0.00 0.00 3.18
5721 7524 9.970395 GATTGAAATTATAGCATTCCATTGTCA 57.030 29.630 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.596452 AGTAAGACGTCGCAATCACAG 58.404 47.619 10.46 0.00 0.00 3.66
9 10 2.543641 TCGATCTAGTAAGACGTCGCA 58.456 47.619 10.46 0.00 35.27 5.10
106 108 3.119388 ACCAGAATTGTCAAATGCCGATG 60.119 43.478 0.00 0.00 0.00 3.84
200 204 4.780554 TGTCCCATGTAAACTCTGTGGATA 59.219 41.667 0.00 0.00 31.59 2.59
201 205 3.587061 TGTCCCATGTAAACTCTGTGGAT 59.413 43.478 0.00 0.00 31.59 3.41
202 206 2.976185 TGTCCCATGTAAACTCTGTGGA 59.024 45.455 0.00 0.00 31.59 4.02
277 291 2.158667 ACAGTTCGGTGGGAAGTCAAAT 60.159 45.455 0.00 0.00 36.13 2.32
280 294 0.834612 AACAGTTCGGTGGGAAGTCA 59.165 50.000 0.00 0.00 36.13 3.41
282 296 1.210967 TCAAACAGTTCGGTGGGAAGT 59.789 47.619 0.00 0.00 38.88 3.01
283 297 1.961793 TCAAACAGTTCGGTGGGAAG 58.038 50.000 0.00 0.00 34.69 3.46
348 367 4.823989 AGTTATAGGTTCAATGCAGATGGC 59.176 41.667 0.00 0.00 45.13 4.40
349 368 7.172190 CAGTAGTTATAGGTTCAATGCAGATGG 59.828 40.741 0.00 0.00 0.00 3.51
350 369 7.712639 ACAGTAGTTATAGGTTCAATGCAGATG 59.287 37.037 0.00 0.00 0.00 2.90
351 370 7.796054 ACAGTAGTTATAGGTTCAATGCAGAT 58.204 34.615 0.00 0.00 0.00 2.90
352 371 7.182817 ACAGTAGTTATAGGTTCAATGCAGA 57.817 36.000 0.00 0.00 0.00 4.26
353 372 6.480320 GGACAGTAGTTATAGGTTCAATGCAG 59.520 42.308 0.00 0.00 0.00 4.41
354 373 6.070481 TGGACAGTAGTTATAGGTTCAATGCA 60.070 38.462 0.00 0.00 0.00 3.96
355 374 6.346096 TGGACAGTAGTTATAGGTTCAATGC 58.654 40.000 0.00 0.00 0.00 3.56
356 375 7.280205 GGTTGGACAGTAGTTATAGGTTCAATG 59.720 40.741 0.00 0.00 30.36 2.82
397 417 1.172180 CCATGTGTGGCCGTGTCTTT 61.172 55.000 0.00 0.00 39.01 2.52
423 443 1.453155 AGCCATGCACTTAGGTTTCG 58.547 50.000 0.00 0.00 0.00 3.46
424 444 2.558359 ACAAGCCATGCACTTAGGTTTC 59.442 45.455 0.00 0.00 0.00 2.78
444 468 9.931210 GTGATTAGGCAAAACACTATATTACAC 57.069 33.333 4.75 0.00 0.00 2.90
445 469 9.116067 GGTGATTAGGCAAAACACTATATTACA 57.884 33.333 10.02 0.00 0.00 2.41
446 470 9.338622 AGGTGATTAGGCAAAACACTATATTAC 57.661 33.333 10.02 0.00 0.00 1.89
448 472 9.914834 TTAGGTGATTAGGCAAAACACTATATT 57.085 29.630 10.02 0.00 0.00 1.28
449 473 9.338622 GTTAGGTGATTAGGCAAAACACTATAT 57.661 33.333 10.02 0.00 0.00 0.86
450 474 8.322828 TGTTAGGTGATTAGGCAAAACACTATA 58.677 33.333 10.02 3.62 0.00 1.31
451 475 7.172342 TGTTAGGTGATTAGGCAAAACACTAT 58.828 34.615 10.02 4.31 0.00 2.12
452 476 6.535540 TGTTAGGTGATTAGGCAAAACACTA 58.464 36.000 10.02 1.51 0.00 2.74
460 484 3.433598 GGCATCTGTTAGGTGATTAGGCA 60.434 47.826 0.00 0.00 0.00 4.75
485 509 2.224867 CCCCAGACCATGAGTTGTTCTT 60.225 50.000 0.00 0.00 0.00 2.52
612 640 0.322546 CCACAGGGGGTAAGCTGTTC 60.323 60.000 0.00 0.00 0.00 3.18
731 760 4.646492 AGAATTATTGCCGCAGAATCCTTT 59.354 37.500 0.00 0.00 0.00 3.11
760 789 4.556233 GGCAGGAACTTAAACAAATGGAC 58.444 43.478 0.00 0.00 34.60 4.02
765 794 1.957877 CCGGGCAGGAACTTAAACAAA 59.042 47.619 0.00 0.00 45.00 2.83
921 950 5.011533 CCTATTAGATCAGGTCAAGGGACAG 59.988 48.000 0.00 0.00 46.17 3.51
922 951 4.901849 CCTATTAGATCAGGTCAAGGGACA 59.098 45.833 0.00 0.00 46.17 4.02
923 952 5.148502 TCCTATTAGATCAGGTCAAGGGAC 58.851 45.833 0.00 0.00 43.55 4.46
924 953 5.418692 TCCTATTAGATCAGGTCAAGGGA 57.581 43.478 0.00 0.00 33.37 4.20
925 954 6.270927 TCAATCCTATTAGATCAGGTCAAGGG 59.729 42.308 0.00 0.00 33.37 3.95
926 955 7.308450 TCAATCCTATTAGATCAGGTCAAGG 57.692 40.000 0.00 0.00 33.37 3.61
929 958 6.948309 TCGATCAATCCTATTAGATCAGGTCA 59.052 38.462 0.00 0.00 37.36 4.02
933 962 9.949174 CTGTATCGATCAATCCTATTAGATCAG 57.051 37.037 0.00 0.00 37.36 2.90
948 977 3.082548 GCTAGGGCTACTGTATCGATCA 58.917 50.000 0.00 0.00 35.22 2.92
963 992 3.626930 ACTAGAAGACTGTCAGCTAGGG 58.373 50.000 26.39 13.65 34.36 3.53
964 993 5.648526 TGTAACTAGAAGACTGTCAGCTAGG 59.351 44.000 26.39 15.97 34.36 3.02
1028 1057 1.076850 ATGAATGCCACGGCCATGA 60.077 52.632 0.00 0.00 41.09 3.07
1038 1067 2.484062 CGCCCACAGGATGAATGCC 61.484 63.158 0.00 0.00 39.69 4.40
1158 1187 2.291043 AAAGGGGGAGACGTCGCAT 61.291 57.895 21.01 0.00 37.37 4.73
1381 1419 1.594833 GTCTGCCGACACCACCATA 59.405 57.895 3.07 0.00 39.98 2.74
1486 1524 3.692406 AGGGAGCCGACGTTGTCC 61.692 66.667 1.30 2.95 0.00 4.02
1763 1805 6.773200 TGTCGAAGATCATCTAGGACAAGTAT 59.227 38.462 15.08 0.00 40.67 2.12
1853 1895 3.727258 CCCCGGATGAAGGCCACA 61.727 66.667 5.01 5.11 0.00 4.17
1951 1999 2.284190 GTAGGCTGGTCAAGAAGCATC 58.716 52.381 0.00 0.00 41.36 3.91
2051 2103 3.131046 CCAGGAAGAGAAGAGAGAAGCTC 59.869 52.174 0.00 0.00 44.29 4.09
2244 2296 4.101448 ATGAGGTCCAGCGCCACC 62.101 66.667 2.29 8.41 0.00 4.61
2265 2317 2.701780 GCTCGCGAAGAGGAGGACA 61.702 63.158 11.33 0.00 46.91 4.02
2268 2320 1.226831 GAAGCTCGCGAAGAGGAGG 60.227 63.158 11.33 0.00 46.91 4.30
2302 2354 1.381191 TGATGCCTAGCGTGAGGGA 60.381 57.895 6.84 4.36 41.75 4.20
2371 2423 9.582431 GTAAAGTCACATGCAGTTTATACTAGA 57.418 33.333 0.00 0.00 31.96 2.43
2372 2424 8.532341 CGTAAAGTCACATGCAGTTTATACTAG 58.468 37.037 8.00 0.00 31.96 2.57
2446 2500 4.513692 TGTTATTTTGCACAAGTAGCTCGT 59.486 37.500 0.00 0.00 0.00 4.18
2475 2529 6.653020 TGACCACACAAAGAGCATTATATCT 58.347 36.000 0.00 0.00 0.00 1.98
2645 2699 7.441157 TCACTGTTACATCGAGTCAATTTCTTT 59.559 33.333 0.00 0.00 0.00 2.52
2820 2900 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
2821 2901 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
2836 2916 7.911205 GCGTATAGATGATCTAAACGCTCTTAT 59.089 37.037 6.22 0.00 40.34 1.73
2837 2917 7.242079 GCGTATAGATGATCTAAACGCTCTTA 58.758 38.462 6.22 0.00 40.34 2.10
2838 2918 6.087522 GCGTATAGATGATCTAAACGCTCTT 58.912 40.000 6.22 0.00 40.34 2.85
2839 2919 5.632959 GCGTATAGATGATCTAAACGCTCT 58.367 41.667 6.22 0.00 40.34 4.09
2840 2920 5.918387 GCGTATAGATGATCTAAACGCTC 57.082 43.478 6.22 0.00 40.34 5.03
2842 2922 5.632959 AGAGCGTATAGATGATCTAAACGC 58.367 41.667 6.22 8.73 35.54 4.84
2857 2937 9.355215 CATCCGTAAAGAAATATAAGAGCGTAT 57.645 33.333 0.00 0.00 0.00 3.06
2858 2938 7.811236 CCATCCGTAAAGAAATATAAGAGCGTA 59.189 37.037 0.00 0.00 0.00 4.42
2859 2939 6.645415 CCATCCGTAAAGAAATATAAGAGCGT 59.355 38.462 0.00 0.00 0.00 5.07
2860 2940 6.866770 TCCATCCGTAAAGAAATATAAGAGCG 59.133 38.462 0.00 0.00 0.00 5.03
2861 2941 7.873505 ACTCCATCCGTAAAGAAATATAAGAGC 59.126 37.037 0.00 0.00 0.00 4.09
2867 2947 9.364653 ACTAGTACTCCATCCGTAAAGAAATAT 57.635 33.333 0.00 0.00 0.00 1.28
2868 2948 8.757982 ACTAGTACTCCATCCGTAAAGAAATA 57.242 34.615 0.00 0.00 0.00 1.40
2869 2949 7.657023 ACTAGTACTCCATCCGTAAAGAAAT 57.343 36.000 0.00 0.00 0.00 2.17
2870 2950 7.472334 AACTAGTACTCCATCCGTAAAGAAA 57.528 36.000 0.00 0.00 0.00 2.52
2871 2951 7.472334 AAACTAGTACTCCATCCGTAAAGAA 57.528 36.000 0.00 0.00 0.00 2.52
2872 2952 7.472334 AAAACTAGTACTCCATCCGTAAAGA 57.528 36.000 0.00 0.00 0.00 2.52
2873 2953 9.813446 AATAAAACTAGTACTCCATCCGTAAAG 57.187 33.333 0.00 0.00 0.00 1.85
2877 2957 9.364653 AGATAATAAAACTAGTACTCCATCCGT 57.635 33.333 0.00 0.00 0.00 4.69
2949 3032 7.419287 CCTTCAGAGGCTCTAAGTAGTCTAGTA 60.419 44.444 18.26 0.00 35.94 1.82
3145 3228 5.596845 GCCATGAACCAAAAAGTGTCTTTA 58.403 37.500 0.00 0.00 0.00 1.85
3146 3229 4.441792 GCCATGAACCAAAAAGTGTCTTT 58.558 39.130 0.00 0.00 0.00 2.52
3147 3230 3.490761 CGCCATGAACCAAAAAGTGTCTT 60.491 43.478 0.00 0.00 0.00 3.01
3271 3354 7.173390 GGGTCTTCATAGATTTCGGGATTTAAG 59.827 40.741 0.00 0.00 31.86 1.85
3272 3355 6.996282 GGGTCTTCATAGATTTCGGGATTTAA 59.004 38.462 0.00 0.00 31.86 1.52
3292 3375 1.445871 GATTAAACGCCAACGGGTCT 58.554 50.000 0.00 0.00 46.04 3.85
3298 3381 2.099098 CCTCCATGGATTAAACGCCAAC 59.901 50.000 16.63 0.00 37.78 3.77
3310 3393 1.434513 AAACCTGCCACCTCCATGGA 61.435 55.000 15.27 15.27 43.02 3.41
3389 3472 0.035739 ACCGCAACCCTAACGTTCAT 59.964 50.000 2.82 0.00 0.00 2.57
3411 3495 1.638467 GCAGTTAGATTCAGCGCGG 59.362 57.895 8.83 0.00 0.00 6.46
3414 3498 1.766143 GCCGGCAGTTAGATTCAGCG 61.766 60.000 24.80 0.00 0.00 5.18
3461 3553 0.844661 TGAAGCTACCCACCACCCAT 60.845 55.000 0.00 0.00 0.00 4.00
3593 3701 7.495606 GGCTGTTGCTATTGGCTTTAATAAAAT 59.504 33.333 0.00 0.00 42.39 1.82
3618 3726 3.699894 ACTGACTGAGCGGCCTGG 61.700 66.667 0.00 0.00 0.00 4.45
3625 3741 2.006056 GCATGGAGTCACTGACTGAGC 61.006 57.143 16.69 10.39 43.53 4.26
3680 3796 9.902196 ATTTAACGTTTCAAGTTGGTAATAAGG 57.098 29.630 5.91 0.00 33.42 2.69
3728 3844 7.041712 GCACTTTGGCTTCCTCTTCTAATATAC 60.042 40.741 0.00 0.00 0.00 1.47
3761 3877 5.634020 GCTGGCTAATAAGATAACCACTACG 59.366 44.000 0.00 0.00 0.00 3.51
3775 3891 4.165180 TGACAACCCTAATGCTGGCTAATA 59.835 41.667 0.00 0.00 0.00 0.98
3796 3912 1.687563 TGTCTCGTGTGGTTCTCTGA 58.312 50.000 0.00 0.00 0.00 3.27
3806 3922 2.940410 ACGTTTTTCCAATGTCTCGTGT 59.060 40.909 0.00 0.00 0.00 4.49
3845 3961 7.021196 CACGCAAATACAGTAAAAATGCTACT 58.979 34.615 0.00 0.00 0.00 2.57
3868 4042 1.683917 ACGAGCTAGTCATGATCCCAC 59.316 52.381 0.00 0.00 0.00 4.61
3892 4066 4.353777 AGACCCAGACATGCTTAGAGTAA 58.646 43.478 0.00 0.00 0.00 2.24
4107 4289 5.604758 TTGACAGTATGCTGCTCTAGAAT 57.395 39.130 11.09 0.00 46.30 2.40
4141 4323 4.838423 TCCTTATCAACAGAACAGTGAGGA 59.162 41.667 0.00 0.00 0.00 3.71
4587 6106 1.534729 AAGGCCGATTTCACCTTCAC 58.465 50.000 0.00 0.00 39.65 3.18
4607 6126 9.760660 CTGAAATGACGAAATTTAAGGTTAGAG 57.239 33.333 0.00 0.00 29.89 2.43
4617 6136 7.308435 GTCTTCCATCTGAAATGACGAAATTT 58.692 34.615 0.00 0.00 31.06 1.82
4963 6483 1.824230 TGGCCTTGCATGATTGTAACC 59.176 47.619 3.32 0.00 0.00 2.85
4974 6494 1.544724 GTTATGGAACTGGCCTTGCA 58.455 50.000 3.32 2.16 32.40 4.08
5000 6525 4.577677 TTGCAAGGGACAGCGCCA 62.578 61.111 2.29 0.00 34.39 5.69
5018 6543 0.106918 TTGGGTTGTGTGGTGGAGTC 60.107 55.000 0.00 0.00 0.00 3.36
5058 6583 6.601332 ACGACTAATTACCATCATGGGAAAT 58.399 36.000 5.08 0.00 44.97 2.17
5214 6747 9.491675 TCAGCAAAATGAAATGTTGTATTCAAT 57.508 25.926 0.00 0.00 43.61 2.57
5215 6748 8.883954 TCAGCAAAATGAAATGTTGTATTCAA 57.116 26.923 0.00 0.00 43.61 2.69
5223 6756 9.857957 AAATGTTTTTCAGCAAAATGAAATGTT 57.142 22.222 3.00 0.00 45.83 2.71
5240 6773 6.515832 AGAGCTCGGAATGAAAAATGTTTTT 58.484 32.000 8.37 3.30 42.60 1.94
5247 6780 7.390440 TGAAATAGAAGAGCTCGGAATGAAAAA 59.610 33.333 8.37 0.00 0.00 1.94
5356 7049 8.835467 TCTTGTTGTTTCATTTCGTTTTCTAG 57.165 30.769 0.00 0.00 0.00 2.43
5455 7150 7.093377 TGTGTGATATATGCCTATGCTGTATCA 60.093 37.037 0.00 7.74 38.71 2.15
5462 7157 6.990341 TCATTGTGTGATATATGCCTATGC 57.010 37.500 0.00 0.00 38.26 3.14
5464 7159 8.786898 GTGTTTCATTGTGTGATATATGCCTAT 58.213 33.333 0.00 0.00 36.54 2.57
5474 7169 4.639755 TGTGTGAGTGTTTCATTGTGTGAT 59.360 37.500 0.00 0.00 38.29 3.06
5476 7171 4.354071 TGTGTGAGTGTTTCATTGTGTG 57.646 40.909 0.00 0.00 38.29 3.82
5477 7172 4.458989 ACTTGTGTGAGTGTTTCATTGTGT 59.541 37.500 0.00 0.00 38.29 3.72
5506 7203 8.087750 TGATTGTGATTTTATCAACCTTGAACC 58.912 33.333 0.00 0.00 41.69 3.62
5508 7205 9.695526 CTTGATTGTGATTTTATCAACCTTGAA 57.304 29.630 0.00 0.00 41.69 2.69
5520 7217 8.143193 TGCATCTGTTAACTTGATTGTGATTTT 58.857 29.630 7.22 0.00 0.00 1.82
5524 7221 6.430616 TGATGCATCTGTTAACTTGATTGTGA 59.569 34.615 26.32 0.00 0.00 3.58
5547 7244 3.253432 CACCTCGACGGATCATTAGATGA 59.747 47.826 7.76 0.00 38.97 2.92
5549 7246 3.487372 TCACCTCGACGGATCATTAGAT 58.513 45.455 7.76 0.00 37.13 1.98
5552 7249 2.617308 GTCTCACCTCGACGGATCATTA 59.383 50.000 7.76 0.00 36.31 1.90
5561 7364 1.950828 TATCTCCGTCTCACCTCGAC 58.049 55.000 0.00 0.00 0.00 4.20
5564 7367 3.632604 TGATGTTATCTCCGTCTCACCTC 59.367 47.826 0.00 0.00 0.00 3.85
5594 7397 1.420138 TCTCCAGCCCCGGATTAAATC 59.580 52.381 0.73 0.00 33.56 2.17
5595 7398 1.518367 TCTCCAGCCCCGGATTAAAT 58.482 50.000 0.73 0.00 33.56 1.40
5596 7399 1.518367 ATCTCCAGCCCCGGATTAAA 58.482 50.000 0.73 0.00 33.56 1.52
5597 7400 1.975680 GTATCTCCAGCCCCGGATTAA 59.024 52.381 0.73 0.00 33.56 1.40
5599 7402 0.399949 TGTATCTCCAGCCCCGGATT 60.400 55.000 0.73 0.00 33.56 3.01
5600 7403 0.399949 TTGTATCTCCAGCCCCGGAT 60.400 55.000 0.73 0.00 33.56 4.18
5602 7405 1.146263 GTTGTATCTCCAGCCCCGG 59.854 63.158 0.00 0.00 0.00 5.73
5603 7406 1.341531 CTAGTTGTATCTCCAGCCCCG 59.658 57.143 0.00 0.00 0.00 5.73
5604 7407 2.365941 GACTAGTTGTATCTCCAGCCCC 59.634 54.545 0.00 0.00 0.00 5.80
5605 7408 2.365941 GGACTAGTTGTATCTCCAGCCC 59.634 54.545 0.00 0.00 0.00 5.19
5606 7409 3.031736 TGGACTAGTTGTATCTCCAGCC 58.968 50.000 0.00 0.00 0.00 4.85
5607 7410 3.181474 GGTGGACTAGTTGTATCTCCAGC 60.181 52.174 9.98 9.98 37.17 4.85
5608 7411 4.023980 TGGTGGACTAGTTGTATCTCCAG 58.976 47.826 0.00 0.00 0.00 3.86
5609 7412 4.055710 TGGTGGACTAGTTGTATCTCCA 57.944 45.455 0.00 0.00 0.00 3.86
5610 7413 4.677250 CGTTGGTGGACTAGTTGTATCTCC 60.677 50.000 0.00 0.00 0.00 3.71
5623 7426 2.165319 AGCTTAGTTCGTTGGTGGAC 57.835 50.000 0.00 0.00 0.00 4.02
5628 7431 4.454504 ACCAAACATAGCTTAGTTCGTTGG 59.545 41.667 14.04 14.04 32.22 3.77
5675 7478 7.056635 TCAATCAATTTAGAATGGAGGGAGTC 58.943 38.462 0.00 0.00 0.00 3.36
5695 7498 9.970395 TGACAATGGAATGCTATAATTTCAATC 57.030 29.630 0.00 0.00 28.84 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.