Multiple sequence alignment - TraesCS6D01G237000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G237000 chr6D 100.000 3810 0 0 3933 7742 335065715 335061906 0.000000e+00 7036.0
1 TraesCS6D01G237000 chr6D 100.000 3669 0 0 1 3669 335069647 335065979 0.000000e+00 6776.0
2 TraesCS6D01G237000 chr6D 98.473 131 1 1 7613 7742 12131846 12131716 6.040000e-56 230.0
3 TraesCS6D01G237000 chr6D 97.710 131 2 1 7613 7742 454662669 454662799 2.810000e-54 224.0
4 TraesCS6D01G237000 chr6D 93.701 127 7 1 7616 7741 344059417 344059543 1.030000e-43 189.0
5 TraesCS6D01G237000 chr6B 95.803 3336 77 15 357 3669 485536507 485539802 0.000000e+00 5326.0
6 TraesCS6D01G237000 chr6B 97.982 2280 40 2 3933 6209 485539897 485542173 0.000000e+00 3951.0
7 TraesCS6D01G237000 chr6B 97.171 1131 29 2 6182 7309 485542174 485543304 0.000000e+00 1908.0
8 TraesCS6D01G237000 chr6B 94.371 302 11 2 7308 7607 485543331 485543628 7.080000e-125 459.0
9 TraesCS6D01G237000 chr6B 93.077 130 8 1 7613 7741 690342955 690342826 1.030000e-43 189.0
10 TraesCS6D01G237000 chr6B 96.104 77 3 0 1577 1653 32495581 32495505 8.160000e-25 126.0
11 TraesCS6D01G237000 chr6A 95.060 2571 81 15 438 2981 474334647 474332096 0.000000e+00 4002.0
12 TraesCS6D01G237000 chr6A 94.346 1804 55 13 5845 7607 474328745 474326948 0.000000e+00 2723.0
13 TraesCS6D01G237000 chr6A 97.737 928 11 5 3952 4870 474330932 474330006 0.000000e+00 1589.0
14 TraesCS6D01G237000 chr6A 96.829 946 30 0 4902 5847 474330011 474329066 0.000000e+00 1581.0
15 TraesCS6D01G237000 chr6A 97.380 687 18 0 2979 3665 474331944 474331258 0.000000e+00 1170.0
16 TraesCS6D01G237000 chr6A 96.319 326 9 1 1 323 474335028 474334703 4.110000e-147 532.0
17 TraesCS6D01G237000 chr6A 96.667 60 1 1 357 415 474334707 474334648 1.780000e-16 99.0
18 TraesCS6D01G237000 chr2B 75.789 570 94 28 6401 6938 600744876 600745433 1.670000e-61 248.0
19 TraesCS6D01G237000 chr2B 83.824 136 21 1 1528 1663 600740645 600740779 2.270000e-25 128.0
20 TraesCS6D01G237000 chr2A 75.218 573 96 30 6401 6938 654912418 654912979 6.040000e-56 230.0
21 TraesCS6D01G237000 chr2A 94.805 77 4 0 7665 7741 716907658 716907734 3.790000e-23 121.0
22 TraesCS6D01G237000 chr2A 91.781 73 5 1 1362 1433 160935801 160935873 4.940000e-17 100.0
23 TraesCS6D01G237000 chr3D 95.455 132 5 1 7612 7742 559132477 559132346 7.870000e-50 209.0
24 TraesCS6D01G237000 chr7A 92.308 130 9 1 7613 7741 540001756 540001885 4.770000e-42 183.0
25 TraesCS6D01G237000 chr7A 86.179 123 15 2 1532 1653 124070544 124070423 1.750000e-26 132.0
26 TraesCS6D01G237000 chr4A 91.406 128 7 2 7615 7741 140298088 140298212 1.030000e-38 172.0
27 TraesCS6D01G237000 chr2D 95.000 100 4 1 7644 7742 13199635 13199536 1.040000e-33 156.0
28 TraesCS6D01G237000 chr2D 83.824 136 21 1 1528 1663 511688582 511688716 2.270000e-25 128.0
29 TraesCS6D01G237000 chr2D 91.304 46 2 1 6866 6911 511693426 511693469 2.330000e-05 62.1
30 TraesCS6D01G237000 chr1D 85.484 124 12 6 1532 1652 278109818 278109698 2.930000e-24 124.0
31 TraesCS6D01G237000 chr1B 85.366 123 14 4 1532 1652 377969153 377969033 2.930000e-24 124.0
32 TraesCS6D01G237000 chr1A 85.366 123 14 4 1532 1652 350400267 350400147 2.930000e-24 124.0
33 TraesCS6D01G237000 chr5B 80.473 169 15 12 1266 1432 497219177 497219025 6.350000e-21 113.0
34 TraesCS6D01G237000 chr5A 80.473 169 15 10 1266 1432 524911996 524911844 6.350000e-21 113.0
35 TraesCS6D01G237000 chr5D 93.243 74 5 0 1359 1432 412743579 412743506 8.210000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G237000 chr6D 335061906 335069647 7741 True 6906.000000 7036 100.00000 1 7742 2 chr6D.!!$R2 7741
1 TraesCS6D01G237000 chr6B 485536507 485543628 7121 False 2911.000000 5326 96.33175 357 7607 4 chr6B.!!$F1 7250
2 TraesCS6D01G237000 chr6A 474326948 474335028 8080 True 1670.857143 4002 96.33400 1 7607 7 chr6A.!!$R1 7606
3 TraesCS6D01G237000 chr2B 600744876 600745433 557 False 248.000000 248 75.78900 6401 6938 1 chr2B.!!$F2 537
4 TraesCS6D01G237000 chr2A 654912418 654912979 561 False 230.000000 230 75.21800 6401 6938 1 chr2A.!!$F2 537


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
373 377 0.033109 TAGCCAGAGGAGCTAGCACA 60.033 55.000 18.83 0.00 41.83 4.57 F
714 725 0.178990 GCCTCTCCTCTCCTCTCCTC 60.179 65.000 0.00 0.00 0.00 3.71 F
1693 1725 0.878416 TTTCTCATTTGGCCCGTTCG 59.122 50.000 0.00 0.00 0.00 3.95 F
1694 1726 0.958382 TTCTCATTTGGCCCGTTCGG 60.958 55.000 0.00 4.08 0.00 4.30 F
2678 2719 1.149101 AACAGTCCCCAGTGTCCATT 58.851 50.000 0.00 0.00 34.87 3.16 F
3144 3347 0.317519 GGCGTTGTTTTCGGAAGTGG 60.318 55.000 0.00 0.00 0.00 4.00 F
4180 4423 4.207891 TGCTCTGGATGTAAGTTCTTCC 57.792 45.455 0.00 0.00 33.83 3.46 F
5357 5608 0.251121 TGGCTCGAATTGCAAAGGGA 60.251 50.000 1.71 0.00 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1502 1530 0.454117 GGAGAGGACGACGAACGAAC 60.454 60.000 0.00 5.83 45.77 3.95 R
2016 2048 0.843309 TCCAGTGAGGAGTTTGGCAA 59.157 50.000 0.00 0.00 43.07 4.52 R
2696 2737 0.877071 GCAACTCAGGTCACATGTGG 59.123 55.000 25.16 10.69 0.00 4.17 R
3116 3319 1.164041 AAAACAACGCCACTCTCCCG 61.164 55.000 0.00 0.00 0.00 5.14 R
3505 3708 2.061773 CAAAGCTCAGGTACACAGACG 58.938 52.381 0.00 0.00 0.00 4.18 R
5111 5362 0.957395 CCAGCTTGCTCCATTCACGT 60.957 55.000 0.00 0.00 0.00 4.49 R
5920 6497 0.468226 TGGCCCATGATTACGACCTC 59.532 55.000 0.00 0.00 0.00 3.85 R
7221 7863 0.815213 AAAGAGCGTCAGTGCAGCAA 60.815 50.000 0.00 0.00 37.31 3.91 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.725557 ATGCTCTACGCCGTGTCGAT 61.726 55.000 0.00 0.00 38.05 3.59
117 118 8.421249 AGGAGATTCCTCATCACTAATAAGAG 57.579 38.462 0.00 0.00 45.66 2.85
166 167 2.752358 CTGGGAGAGCTGCCACAA 59.248 61.111 6.64 0.00 46.48 3.33
334 338 3.726144 GGCCAGCCAGAGGAGCTT 61.726 66.667 3.12 0.00 38.95 3.74
335 339 2.354343 GCCAGCCAGAGGAGCTTT 59.646 61.111 0.00 0.00 38.95 3.51
336 340 1.303970 GCCAGCCAGAGGAGCTTTT 60.304 57.895 0.00 0.00 38.95 2.27
337 341 0.897401 GCCAGCCAGAGGAGCTTTTT 60.897 55.000 0.00 0.00 38.95 1.94
373 377 0.033109 TAGCCAGAGGAGCTAGCACA 60.033 55.000 18.83 0.00 41.83 4.57
374 378 1.153469 GCCAGAGGAGCTAGCACAC 60.153 63.158 18.83 8.09 31.05 3.82
607 612 0.924363 CTCGTATCGTCGTCTTGCCG 60.924 60.000 0.00 0.00 0.00 5.69
623 628 1.228033 CCGTTTTGACCCTCCCGTT 60.228 57.895 0.00 0.00 0.00 4.44
633 638 2.669240 CTCCCGTTCCCTTCCCAC 59.331 66.667 0.00 0.00 0.00 4.61
706 717 3.223589 GCCCTCGCCTCTCCTCTC 61.224 72.222 0.00 0.00 0.00 3.20
707 718 2.520741 CCCTCGCCTCTCCTCTCC 60.521 72.222 0.00 0.00 0.00 3.71
708 719 2.600731 CCTCGCCTCTCCTCTCCT 59.399 66.667 0.00 0.00 0.00 3.69
709 720 1.528309 CCTCGCCTCTCCTCTCCTC 60.528 68.421 0.00 0.00 0.00 3.71
710 721 1.531748 CTCGCCTCTCCTCTCCTCT 59.468 63.158 0.00 0.00 0.00 3.69
711 722 0.535102 CTCGCCTCTCCTCTCCTCTC 60.535 65.000 0.00 0.00 0.00 3.20
712 723 1.528309 CGCCTCTCCTCTCCTCTCC 60.528 68.421 0.00 0.00 0.00 3.71
713 724 1.930520 GCCTCTCCTCTCCTCTCCT 59.069 63.158 0.00 0.00 0.00 3.69
714 725 0.178990 GCCTCTCCTCTCCTCTCCTC 60.179 65.000 0.00 0.00 0.00 3.71
715 726 1.522900 CCTCTCCTCTCCTCTCCTCT 58.477 60.000 0.00 0.00 0.00 3.69
1436 1464 4.403976 CTCGAAGCGTAAGAGCCC 57.596 61.111 0.00 0.00 43.02 5.19
1437 1465 1.511305 CTCGAAGCGTAAGAGCCCA 59.489 57.895 0.00 0.00 43.02 5.36
1453 1481 1.757682 CCCACGCCCAAAGCTATTTA 58.242 50.000 0.00 0.00 40.39 1.40
1479 1507 1.276705 ACCTTCTCTCTCCGCCTTTTC 59.723 52.381 0.00 0.00 0.00 2.29
1502 1530 1.211212 TCTTGTCCTCTCATGCATGGG 59.789 52.381 25.97 23.70 0.00 4.00
1503 1531 0.994247 TTGTCCTCTCATGCATGGGT 59.006 50.000 25.57 0.00 0.00 4.51
1504 1532 0.994247 TGTCCTCTCATGCATGGGTT 59.006 50.000 25.57 0.00 0.00 4.11
1505 1533 1.065199 TGTCCTCTCATGCATGGGTTC 60.065 52.381 25.57 14.32 0.00 3.62
1691 1723 1.550072 CCATTTCTCATTTGGCCCGTT 59.450 47.619 0.00 0.00 0.00 4.44
1692 1724 2.417243 CCATTTCTCATTTGGCCCGTTC 60.417 50.000 0.00 0.00 0.00 3.95
1693 1725 0.878416 TTTCTCATTTGGCCCGTTCG 59.122 50.000 0.00 0.00 0.00 3.95
1694 1726 0.958382 TTCTCATTTGGCCCGTTCGG 60.958 55.000 0.00 4.08 0.00 4.30
1943 1975 1.525995 CAACCGTGTCTGCACCCTT 60.526 57.895 0.00 0.00 42.39 3.95
1985 2017 2.432628 GTGTCCCTTCTGTCGCCG 60.433 66.667 0.00 0.00 0.00 6.46
2016 2048 2.665000 CACACCTGTCGATGCCCT 59.335 61.111 0.00 0.00 0.00 5.19
2021 2053 2.046023 CTGTCGATGCCCTTGCCA 60.046 61.111 0.00 0.00 36.33 4.92
2219 2251 2.694628 TGTGTTCTTGGAGCTTGCAATT 59.305 40.909 0.00 0.00 0.00 2.32
2281 2313 1.279846 TCCTTTGTGGGTTACGGGATC 59.720 52.381 0.00 0.00 36.20 3.36
2452 2484 1.829222 GACCCTTATGGACGAGGTTCA 59.171 52.381 0.00 0.00 38.00 3.18
2473 2506 4.289672 TCAAGCTCATACTTTTCCCCTTCT 59.710 41.667 0.00 0.00 0.00 2.85
2476 2509 6.582929 AGCTCATACTTTTCCCCTTCTTAT 57.417 37.500 0.00 0.00 0.00 1.73
2678 2719 1.149101 AACAGTCCCCAGTGTCCATT 58.851 50.000 0.00 0.00 34.87 3.16
2679 2720 2.038863 ACAGTCCCCAGTGTCCATTA 57.961 50.000 0.00 0.00 29.26 1.90
2685 2726 2.038426 TCCCCAGTGTCCATTATATGCG 59.962 50.000 0.00 0.00 0.00 4.73
2687 2728 3.307691 CCCCAGTGTCCATTATATGCGAT 60.308 47.826 0.00 0.00 0.00 4.58
2720 2769 5.178061 CACATGTGACCTGAGTTGCTAATA 58.822 41.667 21.64 0.00 0.00 0.98
2730 2779 8.268850 ACCTGAGTTGCTAATATTTACTTGTG 57.731 34.615 0.00 0.00 0.00 3.33
2759 2808 1.738350 CAACAGATGAAGGCTGAGCTG 59.262 52.381 3.72 9.77 36.86 4.24
2889 2938 7.821595 TTATTGAGCAATCAAAATTCTGCTG 57.178 32.000 0.00 0.00 32.94 4.41
3015 3218 1.455786 CTGTAGTTTGCGACTGGAACG 59.544 52.381 3.04 0.00 39.48 3.95
3102 3305 2.226962 TCTCCACTACCACTGTACCC 57.773 55.000 0.00 0.00 0.00 3.69
3105 3308 1.192428 CCACTACCACTGTACCCTCC 58.808 60.000 0.00 0.00 0.00 4.30
3116 3319 5.429130 CACTGTACCCTCCCTTAGAATTTC 58.571 45.833 0.00 0.00 0.00 2.17
3144 3347 0.317519 GGCGTTGTTTTCGGAAGTGG 60.318 55.000 0.00 0.00 0.00 4.00
3505 3708 5.831997 ACACTTGCTCATTTCCTTTGTTAC 58.168 37.500 0.00 0.00 0.00 2.50
3565 3768 8.429641 ACGTTCTTAATATGTGGACCTGATTAT 58.570 33.333 0.00 0.00 0.00 1.28
4180 4423 4.207891 TGCTCTGGATGTAAGTTCTTCC 57.792 45.455 0.00 0.00 33.83 3.46
4827 5078 4.396357 TTCCCATTTTCCATGTACACCT 57.604 40.909 0.00 0.00 0.00 4.00
5144 5395 2.998279 GCTGGATGGTGCAACAGGC 61.998 63.158 11.62 8.28 39.98 4.85
5357 5608 0.251121 TGGCTCGAATTGCAAAGGGA 60.251 50.000 1.71 0.00 0.00 4.20
5425 5676 8.950208 AGTATTACTTAATCTGCTTCTGTTCC 57.050 34.615 0.00 0.00 0.00 3.62
5536 5787 8.093307 CACTATATCAGATATGAACCTGCAACT 58.907 37.037 12.62 0.00 0.00 3.16
5920 6497 2.626840 GAGTCTAGGGCAGCTGAAAAG 58.373 52.381 20.43 8.63 0.00 2.27
6217 6822 0.250295 CCACCTTTCCTCGTGCAGAA 60.250 55.000 0.00 0.00 0.00 3.02
6242 6847 3.951680 TGTGCCATGTACTCTCGATTCTA 59.048 43.478 0.00 0.00 0.00 2.10
6273 6878 9.916397 GTTTAATTGTCAGATACGAACTATTGG 57.084 33.333 0.00 0.00 0.00 3.16
6471 7078 2.764010 TGTTGTATACGCTCCTGTGGAT 59.236 45.455 0.00 0.00 0.00 3.41
6591 7207 4.681978 GAGCACAAGACCGGCGGT 62.682 66.667 34.81 34.81 39.44 5.68
7066 7708 1.345741 TGCAAGTGGAGACTCAGGAAG 59.654 52.381 4.53 0.00 0.00 3.46
7221 7863 1.247567 CCGGCCAAAGTTCAGATTGT 58.752 50.000 2.24 0.00 0.00 2.71
7240 7882 0.815213 TTGCTGCACTGACGCTCTTT 60.815 50.000 0.00 0.00 0.00 2.52
7246 7888 1.597937 GCACTGACGCTCTTTTTGGTG 60.598 52.381 0.00 0.00 0.00 4.17
7272 7914 1.470098 CTTTGGTCATGTAGGTGCTGC 59.530 52.381 0.00 0.00 0.00 5.25
7483 8153 0.110823 GTTTGCACGTACAGCCGAAG 60.111 55.000 5.00 0.00 0.00 3.79
7540 8220 1.581934 TCTTTTCACACTGGACTGCG 58.418 50.000 0.00 0.00 0.00 5.18
7599 8279 3.627395 TTGCACCACCGAAATCTATCT 57.373 42.857 0.00 0.00 0.00 1.98
7607 8287 4.878397 CCACCGAAATCTATCTGCTTTTCT 59.122 41.667 0.00 0.00 0.00 2.52
7608 8288 5.355350 CCACCGAAATCTATCTGCTTTTCTT 59.645 40.000 0.00 0.00 0.00 2.52
7609 8289 6.127897 CCACCGAAATCTATCTGCTTTTCTTT 60.128 38.462 0.00 0.00 0.00 2.52
7610 8290 7.308435 CACCGAAATCTATCTGCTTTTCTTTT 58.692 34.615 0.00 0.00 0.00 2.27
7611 8291 7.809806 CACCGAAATCTATCTGCTTTTCTTTTT 59.190 33.333 0.00 0.00 0.00 1.94
7612 8292 8.023706 ACCGAAATCTATCTGCTTTTCTTTTTC 58.976 33.333 0.00 0.00 0.00 2.29
7613 8293 7.217070 CCGAAATCTATCTGCTTTTCTTTTTCG 59.783 37.037 0.00 0.00 40.54 3.46
7614 8294 7.217070 CGAAATCTATCTGCTTTTCTTTTTCGG 59.783 37.037 0.00 0.00 38.49 4.30
7615 8295 7.454260 AATCTATCTGCTTTTCTTTTTCGGT 57.546 32.000 0.00 0.00 0.00 4.69
7616 8296 6.241207 TCTATCTGCTTTTCTTTTTCGGTG 57.759 37.500 0.00 0.00 0.00 4.94
7617 8297 5.995282 TCTATCTGCTTTTCTTTTTCGGTGA 59.005 36.000 0.00 0.00 0.00 4.02
7618 8298 4.287238 TCTGCTTTTCTTTTTCGGTGAC 57.713 40.909 0.00 0.00 0.00 3.67
7633 8313 3.999229 GGTGACGCTAAATCTCAGTTG 57.001 47.619 0.00 0.00 0.00 3.16
7634 8314 3.585862 GGTGACGCTAAATCTCAGTTGA 58.414 45.455 0.00 0.00 0.00 3.18
7635 8315 3.368236 GGTGACGCTAAATCTCAGTTGAC 59.632 47.826 0.00 0.00 0.00 3.18
7636 8316 4.238514 GTGACGCTAAATCTCAGTTGACT 58.761 43.478 0.00 0.00 0.00 3.41
7637 8317 4.090642 GTGACGCTAAATCTCAGTTGACTG 59.909 45.833 4.77 4.77 45.08 3.51
7648 8328 3.371102 CAGTTGACTGAGACTTCGGAA 57.629 47.619 5.19 0.00 46.59 4.30
7649 8329 3.312828 CAGTTGACTGAGACTTCGGAAG 58.687 50.000 15.96 15.96 46.59 3.46
7650 8330 2.959707 AGTTGACTGAGACTTCGGAAGT 59.040 45.455 22.59 22.59 46.38 3.01
7651 8331 5.084132 CAGTTGACTGAGACTTCGGAAGTC 61.084 50.000 33.31 33.31 47.00 3.01
7660 8340 3.372660 ACTTCGGAAGTCTCAGTCAAC 57.627 47.619 17.38 0.00 37.02 3.18
7661 8341 2.287668 ACTTCGGAAGTCTCAGTCAACG 60.288 50.000 17.38 0.00 37.02 4.10
7662 8342 1.315690 TCGGAAGTCTCAGTCAACGT 58.684 50.000 0.00 0.00 0.00 3.99
7663 8343 1.001706 TCGGAAGTCTCAGTCAACGTG 60.002 52.381 0.00 0.00 0.00 4.49
7664 8344 1.269102 CGGAAGTCTCAGTCAACGTGT 60.269 52.381 0.00 0.00 0.00 4.49
7665 8345 2.395654 GGAAGTCTCAGTCAACGTGTC 58.604 52.381 0.00 0.00 0.00 3.67
7666 8346 2.223735 GGAAGTCTCAGTCAACGTGTCA 60.224 50.000 0.00 0.00 0.00 3.58
7667 8347 2.783828 AGTCTCAGTCAACGTGTCAG 57.216 50.000 0.00 0.00 0.00 3.51
7668 8348 1.132588 GTCTCAGTCAACGTGTCAGC 58.867 55.000 0.00 0.00 0.00 4.26
7669 8349 0.032130 TCTCAGTCAACGTGTCAGCC 59.968 55.000 0.00 0.00 0.00 4.85
7670 8350 1.278172 CTCAGTCAACGTGTCAGCCG 61.278 60.000 0.00 0.00 0.00 5.52
7671 8351 1.591594 CAGTCAACGTGTCAGCCGT 60.592 57.895 0.00 0.00 40.92 5.68
7672 8352 0.318360 CAGTCAACGTGTCAGCCGTA 60.318 55.000 0.00 0.00 37.61 4.02
7673 8353 0.601558 AGTCAACGTGTCAGCCGTAT 59.398 50.000 0.00 0.00 37.61 3.06
7674 8354 0.713883 GTCAACGTGTCAGCCGTATG 59.286 55.000 0.00 0.00 37.61 2.39
7675 8355 0.599060 TCAACGTGTCAGCCGTATGA 59.401 50.000 0.00 0.00 37.61 2.15
7676 8356 1.203758 TCAACGTGTCAGCCGTATGAT 59.796 47.619 0.00 0.00 37.61 2.45
7677 8357 1.999735 CAACGTGTCAGCCGTATGATT 59.000 47.619 0.00 0.00 37.61 2.57
7678 8358 3.119424 TCAACGTGTCAGCCGTATGATTA 60.119 43.478 0.00 0.00 37.61 1.75
7679 8359 3.728076 ACGTGTCAGCCGTATGATTAT 57.272 42.857 0.00 0.00 36.65 1.28
7680 8360 4.054780 ACGTGTCAGCCGTATGATTATT 57.945 40.909 0.00 0.00 36.65 1.40
7681 8361 5.190992 ACGTGTCAGCCGTATGATTATTA 57.809 39.130 0.00 0.00 36.65 0.98
7682 8362 4.980434 ACGTGTCAGCCGTATGATTATTAC 59.020 41.667 0.00 0.00 36.65 1.89
7683 8363 5.220381 CGTGTCAGCCGTATGATTATTACT 58.780 41.667 0.00 0.00 0.00 2.24
7684 8364 5.690409 CGTGTCAGCCGTATGATTATTACTT 59.310 40.000 0.00 0.00 0.00 2.24
7685 8365 6.345803 CGTGTCAGCCGTATGATTATTACTTG 60.346 42.308 0.00 0.00 0.00 3.16
7686 8366 5.465390 TGTCAGCCGTATGATTATTACTTGC 59.535 40.000 0.00 0.00 0.00 4.01
7687 8367 5.696724 GTCAGCCGTATGATTATTACTTGCT 59.303 40.000 0.00 0.00 0.00 3.91
7688 8368 6.202954 GTCAGCCGTATGATTATTACTTGCTT 59.797 38.462 0.00 0.00 0.00 3.91
7689 8369 6.765989 TCAGCCGTATGATTATTACTTGCTTT 59.234 34.615 0.00 0.00 0.00 3.51
7690 8370 7.929245 TCAGCCGTATGATTATTACTTGCTTTA 59.071 33.333 0.00 0.00 0.00 1.85
7691 8371 8.556194 CAGCCGTATGATTATTACTTGCTTTAA 58.444 33.333 0.00 0.00 0.00 1.52
7692 8372 8.774586 AGCCGTATGATTATTACTTGCTTTAAG 58.225 33.333 0.00 0.00 42.30 1.85
7693 8373 8.770828 GCCGTATGATTATTACTTGCTTTAAGA 58.229 33.333 0.00 0.00 39.76 2.10
7702 8382 9.820229 TTATTACTTGCTTTAAGATTCGTGTTG 57.180 29.630 0.00 0.00 39.76 3.33
7703 8383 5.108385 ACTTGCTTTAAGATTCGTGTTGG 57.892 39.130 0.00 0.00 39.76 3.77
7704 8384 4.819630 ACTTGCTTTAAGATTCGTGTTGGA 59.180 37.500 0.00 0.00 39.76 3.53
7705 8385 5.049405 ACTTGCTTTAAGATTCGTGTTGGAG 60.049 40.000 0.00 0.00 39.76 3.86
7706 8386 4.637276 TGCTTTAAGATTCGTGTTGGAGA 58.363 39.130 0.00 0.00 0.00 3.71
7707 8387 4.690748 TGCTTTAAGATTCGTGTTGGAGAG 59.309 41.667 0.00 0.00 0.00 3.20
7708 8388 4.691216 GCTTTAAGATTCGTGTTGGAGAGT 59.309 41.667 0.00 0.00 0.00 3.24
7709 8389 5.179555 GCTTTAAGATTCGTGTTGGAGAGTT 59.820 40.000 0.00 0.00 0.00 3.01
7710 8390 6.539649 TTTAAGATTCGTGTTGGAGAGTTG 57.460 37.500 0.00 0.00 0.00 3.16
7711 8391 3.045601 AGATTCGTGTTGGAGAGTTGG 57.954 47.619 0.00 0.00 0.00 3.77
7712 8392 2.368875 AGATTCGTGTTGGAGAGTTGGT 59.631 45.455 0.00 0.00 0.00 3.67
7713 8393 2.702592 TTCGTGTTGGAGAGTTGGTT 57.297 45.000 0.00 0.00 0.00 3.67
7714 8394 1.948104 TCGTGTTGGAGAGTTGGTTG 58.052 50.000 0.00 0.00 0.00 3.77
7715 8395 1.208535 TCGTGTTGGAGAGTTGGTTGT 59.791 47.619 0.00 0.00 0.00 3.32
7716 8396 2.014128 CGTGTTGGAGAGTTGGTTGTT 58.986 47.619 0.00 0.00 0.00 2.83
7717 8397 2.422127 CGTGTTGGAGAGTTGGTTGTTT 59.578 45.455 0.00 0.00 0.00 2.83
7718 8398 3.119637 CGTGTTGGAGAGTTGGTTGTTTT 60.120 43.478 0.00 0.00 0.00 2.43
7719 8399 4.173256 GTGTTGGAGAGTTGGTTGTTTTG 58.827 43.478 0.00 0.00 0.00 2.44
7720 8400 3.829601 TGTTGGAGAGTTGGTTGTTTTGT 59.170 39.130 0.00 0.00 0.00 2.83
7721 8401 4.282195 TGTTGGAGAGTTGGTTGTTTTGTT 59.718 37.500 0.00 0.00 0.00 2.83
7722 8402 5.221541 TGTTGGAGAGTTGGTTGTTTTGTTT 60.222 36.000 0.00 0.00 0.00 2.83
7723 8403 5.476091 TGGAGAGTTGGTTGTTTTGTTTT 57.524 34.783 0.00 0.00 0.00 2.43
7724 8404 5.474825 TGGAGAGTTGGTTGTTTTGTTTTC 58.525 37.500 0.00 0.00 0.00 2.29
7725 8405 5.011125 TGGAGAGTTGGTTGTTTTGTTTTCA 59.989 36.000 0.00 0.00 0.00 2.69
7726 8406 5.576774 GGAGAGTTGGTTGTTTTGTTTTCAG 59.423 40.000 0.00 0.00 0.00 3.02
7727 8407 4.929211 AGAGTTGGTTGTTTTGTTTTCAGC 59.071 37.500 0.00 0.00 0.00 4.26
7728 8408 4.000325 AGTTGGTTGTTTTGTTTTCAGCC 59.000 39.130 0.00 0.00 34.01 4.85
7729 8409 3.971245 TGGTTGTTTTGTTTTCAGCCT 57.029 38.095 0.00 0.00 34.41 4.58
7730 8410 3.594134 TGGTTGTTTTGTTTTCAGCCTG 58.406 40.909 0.00 0.00 34.41 4.85
7731 8411 2.351418 GGTTGTTTTGTTTTCAGCCTGC 59.649 45.455 0.00 0.00 31.45 4.85
7732 8412 3.261580 GTTGTTTTGTTTTCAGCCTGCT 58.738 40.909 0.00 0.00 0.00 4.24
7733 8413 4.429108 GTTGTTTTGTTTTCAGCCTGCTA 58.571 39.130 0.00 0.00 0.00 3.49
7734 8414 4.727507 TGTTTTGTTTTCAGCCTGCTAA 57.272 36.364 0.00 0.00 0.00 3.09
7735 8415 4.681744 TGTTTTGTTTTCAGCCTGCTAAG 58.318 39.130 0.00 0.00 0.00 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 5.394738 TGACTCTCTCTTTCTTCCCAAGTA 58.605 41.667 0.00 0.00 0.00 2.24
117 118 8.833231 TGGAGTAAATCAGATTTATTCGGATC 57.167 34.615 22.64 14.19 40.37 3.36
166 167 3.252215 TGCGAATGATTTTTCAGACCGTT 59.748 39.130 0.00 0.00 0.00 4.44
236 240 1.741770 CGTGGGCTGCTCACTAACC 60.742 63.158 28.21 6.50 33.31 2.85
318 322 0.897401 AAAAAGCTCCTCTGGCTGGC 60.897 55.000 0.00 0.00 40.19 4.85
319 323 3.353342 AAAAAGCTCCTCTGGCTGG 57.647 52.632 0.00 0.00 40.19 4.85
341 345 2.548057 CTCTGGCTAGCACGTTCAAAAA 59.452 45.455 18.24 0.00 0.00 1.94
342 346 2.143122 CTCTGGCTAGCACGTTCAAAA 58.857 47.619 18.24 0.00 0.00 2.44
343 347 1.608025 CCTCTGGCTAGCACGTTCAAA 60.608 52.381 18.24 0.00 0.00 2.69
344 348 0.037326 CCTCTGGCTAGCACGTTCAA 60.037 55.000 18.24 0.00 0.00 2.69
345 349 0.898326 TCCTCTGGCTAGCACGTTCA 60.898 55.000 18.24 3.62 0.00 3.18
346 350 0.179124 CTCCTCTGGCTAGCACGTTC 60.179 60.000 18.24 0.00 0.00 3.95
347 351 1.893786 CTCCTCTGGCTAGCACGTT 59.106 57.895 18.24 0.00 0.00 3.99
348 352 2.716017 GCTCCTCTGGCTAGCACGT 61.716 63.158 18.24 0.00 36.26 4.49
349 353 1.103987 TAGCTCCTCTGGCTAGCACG 61.104 60.000 18.24 6.61 40.74 5.34
350 354 2.814023 TAGCTCCTCTGGCTAGCAC 58.186 57.895 18.24 6.66 40.74 4.40
607 612 0.892358 GGGAACGGGAGGGTCAAAAC 60.892 60.000 0.00 0.00 0.00 2.43
705 716 6.336930 AGGATTAGAATAAGGAGAGGAGAGGA 59.663 42.308 0.00 0.00 0.00 3.71
706 717 6.561294 AGGATTAGAATAAGGAGAGGAGAGG 58.439 44.000 0.00 0.00 0.00 3.69
707 718 6.663523 GGAGGATTAGAATAAGGAGAGGAGAG 59.336 46.154 0.00 0.00 0.00 3.20
708 719 6.469533 GGGAGGATTAGAATAAGGAGAGGAGA 60.470 46.154 0.00 0.00 0.00 3.71
709 720 5.719563 GGGAGGATTAGAATAAGGAGAGGAG 59.280 48.000 0.00 0.00 0.00 3.69
710 721 5.461317 GGGGAGGATTAGAATAAGGAGAGGA 60.461 48.000 0.00 0.00 0.00 3.71
711 722 4.780554 GGGGAGGATTAGAATAAGGAGAGG 59.219 50.000 0.00 0.00 0.00 3.69
712 723 5.660533 AGGGGAGGATTAGAATAAGGAGAG 58.339 45.833 0.00 0.00 0.00 3.20
713 724 5.656420 GAGGGGAGGATTAGAATAAGGAGA 58.344 45.833 0.00 0.00 0.00 3.71
714 725 4.464597 CGAGGGGAGGATTAGAATAAGGAG 59.535 50.000 0.00 0.00 0.00 3.69
715 726 4.417437 CGAGGGGAGGATTAGAATAAGGA 58.583 47.826 0.00 0.00 0.00 3.36
781 792 4.098196 CCTCTTTCTACTACCACTGCTACC 59.902 50.000 0.00 0.00 0.00 3.18
861 876 2.125512 GAATCCTCGGCTGCGTGT 60.126 61.111 0.00 0.00 0.00 4.49
1453 1481 1.479709 CGGAGAGAGAAGGTGGATGT 58.520 55.000 0.00 0.00 0.00 3.06
1479 1507 0.907486 TGCATGAGAGGACAAGAGGG 59.093 55.000 0.00 0.00 0.00 4.30
1502 1530 0.454117 GGAGAGGACGACGAACGAAC 60.454 60.000 0.00 5.83 45.77 3.95
1503 1531 1.871772 GGAGAGGACGACGAACGAA 59.128 57.895 0.00 0.00 45.77 3.85
1504 1532 2.385875 CGGAGAGGACGACGAACGA 61.386 63.158 0.00 0.00 45.77 3.85
1691 1723 3.060020 GATTCGCACGAGACCCCGA 62.060 63.158 0.00 0.00 0.00 5.14
1692 1724 2.582498 GATTCGCACGAGACCCCG 60.582 66.667 0.00 0.00 0.00 5.73
1693 1725 2.202892 GGATTCGCACGAGACCCC 60.203 66.667 0.00 0.00 0.00 4.95
1694 1726 1.519455 CAGGATTCGCACGAGACCC 60.519 63.158 11.83 6.64 0.00 4.46
2016 2048 0.843309 TCCAGTGAGGAGTTTGGCAA 59.157 50.000 0.00 0.00 43.07 4.52
2163 2195 8.872888 ATGTCCACCATAGATGCTAAAGCAGG 62.873 46.154 10.83 8.06 42.92 4.85
2177 2209 3.055167 CAGACCTGTCAATGTCCACCATA 60.055 47.826 0.00 0.00 31.97 2.74
2219 2251 2.677836 GACAAGTTCATCCATTGCGCTA 59.322 45.455 9.73 0.00 0.00 4.26
2281 2313 1.852067 CTTGTCCGGAAAACCAGGCG 61.852 60.000 5.23 0.00 0.00 5.52
2452 2484 4.936685 AGAAGGGGAAAAGTATGAGCTT 57.063 40.909 0.00 0.00 0.00 3.74
2507 2540 9.632807 GGAGAAACATCAGTATAGTAAGCATAG 57.367 37.037 0.00 0.00 0.00 2.23
2520 2553 6.491062 TGTGAAATGAATGGAGAAACATCAGT 59.509 34.615 0.00 0.00 0.00 3.41
2529 2562 3.614092 GCCTCTGTGAAATGAATGGAGA 58.386 45.455 0.00 0.00 0.00 3.71
2696 2737 0.877071 GCAACTCAGGTCACATGTGG 59.123 55.000 25.16 10.69 0.00 4.17
2720 2769 7.319646 TCTGTTGCAAGAAAACACAAGTAAAT 58.680 30.769 0.00 0.00 34.02 1.40
2730 2779 3.737774 GCCTTCATCTGTTGCAAGAAAAC 59.262 43.478 0.00 0.00 0.00 2.43
2867 2916 4.630069 GCAGCAGAATTTTGATTGCTCAAT 59.370 37.500 14.60 0.00 44.49 2.57
2889 2938 4.783621 TGAGCCTGCGGATGTGGC 62.784 66.667 0.00 0.00 46.42 5.01
2904 2953 3.391296 AGCCTCCTACACTTCAAGTTTGA 59.609 43.478 0.00 0.00 34.92 2.69
3015 3218 3.064271 TGACCAGTTACTTTCGTGCAAAC 59.936 43.478 0.00 0.00 0.00 2.93
3038 3241 3.261981 TCTAATGCTCCCGGAAAACTC 57.738 47.619 0.73 0.00 0.00 3.01
3105 3308 3.798202 CCACTCTCCCGAAATTCTAAGG 58.202 50.000 0.00 0.00 0.00 2.69
3116 3319 1.164041 AAAACAACGCCACTCTCCCG 61.164 55.000 0.00 0.00 0.00 5.14
3505 3708 2.061773 CAAAGCTCAGGTACACAGACG 58.938 52.381 0.00 0.00 0.00 4.18
3565 3768 7.279758 CCAGTTTTTAAAGCAAATCAGTTTCCA 59.720 33.333 0.00 0.00 0.00 3.53
3941 4144 5.212934 CGTACATATAAGACAGCGTGTGAT 58.787 41.667 0.00 0.00 0.00 3.06
4036 4279 3.360867 TCTTGTCTGCAAACTCCCAAAA 58.639 40.909 0.00 0.00 33.73 2.44
4180 4423 8.958175 TGAAAACGGCTTGTGTATAAATAAAG 57.042 30.769 0.00 0.00 0.00 1.85
4459 4710 6.748132 AGTGCAGAGATTAGATAGCTCTTTC 58.252 40.000 0.00 0.00 36.91 2.62
4827 5078 5.181245 GGCATAGAAACAGTGAGCTTTACAA 59.819 40.000 0.00 0.00 0.00 2.41
5111 5362 0.957395 CCAGCTTGCTCCATTCACGT 60.957 55.000 0.00 0.00 0.00 4.49
5152 5403 1.004595 CATGACACGCACATCCTCAG 58.995 55.000 0.00 0.00 0.00 3.35
5357 5608 5.765182 GGATACCGAATTTCCATTCTGATGT 59.235 40.000 0.00 0.00 37.27 3.06
5515 5766 8.579850 AAAAAGTTGCAGGTTCATATCTGATA 57.420 30.769 0.00 0.00 33.11 2.15
5631 5882 9.781834 CGTAAAATGGAGTGCTAAATCATTTTA 57.218 29.630 12.57 12.57 42.52 1.52
5644 5895 5.924475 AGAAAGTGACGTAAAATGGAGTG 57.076 39.130 0.00 0.00 0.00 3.51
5920 6497 0.468226 TGGCCCATGATTACGACCTC 59.532 55.000 0.00 0.00 0.00 3.85
6242 6847 9.052759 AGTTCGTATCTGACAATTAAACAGTTT 57.947 29.630 3.49 3.49 33.93 2.66
6273 6878 4.309099 TGTTGAAATTTTGATGGAGCAGC 58.691 39.130 0.00 0.00 0.00 5.25
6353 6958 8.840321 GCAGCAGAAGGTATGAATAATTAGAAA 58.160 33.333 0.00 0.00 0.00 2.52
6354 6959 7.992608 TGCAGCAGAAGGTATGAATAATTAGAA 59.007 33.333 0.00 0.00 0.00 2.10
6591 7207 1.830587 ATGCCACGGTCAGCAGAGAA 61.831 55.000 8.20 0.00 43.38 2.87
7066 7708 2.483889 GCACTAGTAGATCAACCCAGCC 60.484 54.545 3.59 0.00 0.00 4.85
7221 7863 0.815213 AAAGAGCGTCAGTGCAGCAA 60.815 50.000 0.00 0.00 37.31 3.91
7240 7882 3.935818 TGACCAAAGACTACCACCAAA 57.064 42.857 0.00 0.00 0.00 3.28
7246 7888 4.504858 CACCTACATGACCAAAGACTACC 58.495 47.826 0.00 0.00 0.00 3.18
7272 7914 4.039973 TGACCAAACTGTAGGTACTCCAAG 59.960 45.833 5.00 0.00 41.75 3.61
7412 8082 2.845739 CGCCATCGACGTAACAGCG 61.846 63.158 5.30 5.30 38.10 5.18
7540 8220 8.845413 ACTTCTCTTCTGATCCAATTATATGC 57.155 34.615 0.00 0.00 0.00 3.14
7599 8279 2.793237 GCGTCACCGAAAAAGAAAAGCA 60.793 45.455 0.00 0.00 35.63 3.91
7607 8287 4.059511 TGAGATTTAGCGTCACCGAAAAA 58.940 39.130 0.00 0.00 35.63 1.94
7608 8288 3.655486 TGAGATTTAGCGTCACCGAAAA 58.345 40.909 0.00 0.00 35.63 2.29
7609 8289 3.250744 CTGAGATTTAGCGTCACCGAAA 58.749 45.455 0.00 0.00 35.63 3.46
7610 8290 2.230508 ACTGAGATTTAGCGTCACCGAA 59.769 45.455 0.00 0.00 35.63 4.30
7611 8291 1.816835 ACTGAGATTTAGCGTCACCGA 59.183 47.619 0.00 0.00 35.63 4.69
7612 8292 2.279582 ACTGAGATTTAGCGTCACCG 57.720 50.000 0.00 0.00 37.07 4.94
7613 8293 3.368236 GTCAACTGAGATTTAGCGTCACC 59.632 47.826 0.00 0.00 0.00 4.02
7614 8294 4.090642 CAGTCAACTGAGATTTAGCGTCAC 59.909 45.833 4.05 0.00 46.59 3.67
7615 8295 4.237724 CAGTCAACTGAGATTTAGCGTCA 58.762 43.478 4.05 0.00 46.59 4.35
7616 8296 4.831741 CAGTCAACTGAGATTTAGCGTC 57.168 45.455 4.05 0.00 46.59 5.19
7627 8307 5.468367 ACTTCCGAAGTCTCAGTCAACTGA 61.468 45.833 8.03 12.07 43.58 3.41
7628 8308 3.243569 ACTTCCGAAGTCTCAGTCAACTG 60.244 47.826 8.03 3.69 40.54 3.16
7629 8309 2.959707 ACTTCCGAAGTCTCAGTCAACT 59.040 45.455 8.03 0.00 37.02 3.16
7630 8310 3.372660 ACTTCCGAAGTCTCAGTCAAC 57.627 47.619 8.03 0.00 37.02 3.18
7640 8320 2.287668 CGTTGACTGAGACTTCCGAAGT 60.288 50.000 13.75 13.75 46.38 3.01
7641 8321 2.287668 ACGTTGACTGAGACTTCCGAAG 60.288 50.000 6.59 6.59 0.00 3.79
7642 8322 1.679680 ACGTTGACTGAGACTTCCGAA 59.320 47.619 0.00 0.00 0.00 4.30
7643 8323 1.001706 CACGTTGACTGAGACTTCCGA 60.002 52.381 0.00 0.00 0.00 4.55
7644 8324 1.269102 ACACGTTGACTGAGACTTCCG 60.269 52.381 0.00 0.00 0.00 4.30
7645 8325 2.223735 TGACACGTTGACTGAGACTTCC 60.224 50.000 0.00 0.00 0.00 3.46
7646 8326 3.046390 CTGACACGTTGACTGAGACTTC 58.954 50.000 0.00 0.00 0.00 3.01
7647 8327 2.799917 GCTGACACGTTGACTGAGACTT 60.800 50.000 0.00 0.00 0.00 3.01
7648 8328 1.269309 GCTGACACGTTGACTGAGACT 60.269 52.381 0.00 0.00 0.00 3.24
7649 8329 1.132588 GCTGACACGTTGACTGAGAC 58.867 55.000 0.00 0.00 0.00 3.36
7650 8330 0.032130 GGCTGACACGTTGACTGAGA 59.968 55.000 0.00 0.00 0.00 3.27
7651 8331 1.278172 CGGCTGACACGTTGACTGAG 61.278 60.000 0.00 0.00 0.00 3.35
7652 8332 1.299850 CGGCTGACACGTTGACTGA 60.300 57.895 0.00 0.00 0.00 3.41
7653 8333 0.318360 TACGGCTGACACGTTGACTG 60.318 55.000 0.00 0.00 42.70 3.51
7654 8334 0.601558 ATACGGCTGACACGTTGACT 59.398 50.000 0.00 0.00 42.70 3.41
7655 8335 0.713883 CATACGGCTGACACGTTGAC 59.286 55.000 0.00 0.00 42.70 3.18
7656 8336 0.599060 TCATACGGCTGACACGTTGA 59.401 50.000 0.00 0.00 42.70 3.18
7657 8337 1.640428 ATCATACGGCTGACACGTTG 58.360 50.000 0.00 0.00 42.70 4.10
7658 8338 2.380084 AATCATACGGCTGACACGTT 57.620 45.000 0.00 0.00 42.70 3.99
7660 8340 5.220381 AGTAATAATCATACGGCTGACACG 58.780 41.667 0.00 0.00 37.36 4.49
7661 8341 6.564125 GCAAGTAATAATCATACGGCTGACAC 60.564 42.308 0.00 0.00 0.00 3.67
7662 8342 5.465390 GCAAGTAATAATCATACGGCTGACA 59.535 40.000 0.00 0.00 0.00 3.58
7663 8343 5.696724 AGCAAGTAATAATCATACGGCTGAC 59.303 40.000 0.00 0.00 37.38 3.51
7664 8344 5.853936 AGCAAGTAATAATCATACGGCTGA 58.146 37.500 0.00 0.00 37.38 4.26
7665 8345 6.545504 AAGCAAGTAATAATCATACGGCTG 57.454 37.500 0.00 0.00 38.16 4.85
7666 8346 8.671384 TTAAAGCAAGTAATAATCATACGGCT 57.329 30.769 0.00 0.00 39.08 5.52
7667 8347 8.770828 TCTTAAAGCAAGTAATAATCATACGGC 58.229 33.333 0.00 0.00 35.58 5.68
7676 8356 9.820229 CAACACGAATCTTAAAGCAAGTAATAA 57.180 29.630 0.00 0.00 35.58 1.40
7677 8357 8.447833 CCAACACGAATCTTAAAGCAAGTAATA 58.552 33.333 0.00 0.00 35.58 0.98
7678 8358 7.174253 TCCAACACGAATCTTAAAGCAAGTAAT 59.826 33.333 0.00 0.00 35.58 1.89
7679 8359 6.483974 TCCAACACGAATCTTAAAGCAAGTAA 59.516 34.615 0.00 0.00 35.58 2.24
7680 8360 5.992829 TCCAACACGAATCTTAAAGCAAGTA 59.007 36.000 0.00 0.00 35.58 2.24
7681 8361 4.819630 TCCAACACGAATCTTAAAGCAAGT 59.180 37.500 0.00 0.00 35.58 3.16
7682 8362 5.179368 TCTCCAACACGAATCTTAAAGCAAG 59.821 40.000 0.00 0.00 35.38 4.01
7683 8363 5.060506 TCTCCAACACGAATCTTAAAGCAA 58.939 37.500 0.00 0.00 0.00 3.91
7684 8364 4.637276 TCTCCAACACGAATCTTAAAGCA 58.363 39.130 0.00 0.00 0.00 3.91
7685 8365 4.691216 ACTCTCCAACACGAATCTTAAAGC 59.309 41.667 0.00 0.00 0.00 3.51
7686 8366 6.347725 CCAACTCTCCAACACGAATCTTAAAG 60.348 42.308 0.00 0.00 0.00 1.85
7687 8367 5.468746 CCAACTCTCCAACACGAATCTTAAA 59.531 40.000 0.00 0.00 0.00 1.52
7688 8368 4.994852 CCAACTCTCCAACACGAATCTTAA 59.005 41.667 0.00 0.00 0.00 1.85
7689 8369 4.039973 ACCAACTCTCCAACACGAATCTTA 59.960 41.667 0.00 0.00 0.00 2.10
7690 8370 3.181454 ACCAACTCTCCAACACGAATCTT 60.181 43.478 0.00 0.00 0.00 2.40
7691 8371 2.368875 ACCAACTCTCCAACACGAATCT 59.631 45.455 0.00 0.00 0.00 2.40
7692 8372 2.767505 ACCAACTCTCCAACACGAATC 58.232 47.619 0.00 0.00 0.00 2.52
7693 8373 2.878406 CAACCAACTCTCCAACACGAAT 59.122 45.455 0.00 0.00 0.00 3.34
7694 8374 2.285083 CAACCAACTCTCCAACACGAA 58.715 47.619 0.00 0.00 0.00 3.85
7695 8375 1.208535 ACAACCAACTCTCCAACACGA 59.791 47.619 0.00 0.00 0.00 4.35
7696 8376 1.663695 ACAACCAACTCTCCAACACG 58.336 50.000 0.00 0.00 0.00 4.49
7697 8377 4.173256 CAAAACAACCAACTCTCCAACAC 58.827 43.478 0.00 0.00 0.00 3.32
7698 8378 3.829601 ACAAAACAACCAACTCTCCAACA 59.170 39.130 0.00 0.00 0.00 3.33
7699 8379 4.450082 ACAAAACAACCAACTCTCCAAC 57.550 40.909 0.00 0.00 0.00 3.77
7700 8380 5.476091 AAACAAAACAACCAACTCTCCAA 57.524 34.783 0.00 0.00 0.00 3.53
7701 8381 5.011125 TGAAAACAAAACAACCAACTCTCCA 59.989 36.000 0.00 0.00 0.00 3.86
7702 8382 5.474825 TGAAAACAAAACAACCAACTCTCC 58.525 37.500 0.00 0.00 0.00 3.71
7703 8383 5.062183 GCTGAAAACAAAACAACCAACTCTC 59.938 40.000 0.00 0.00 0.00 3.20
7704 8384 4.929211 GCTGAAAACAAAACAACCAACTCT 59.071 37.500 0.00 0.00 0.00 3.24
7705 8385 4.092821 GGCTGAAAACAAAACAACCAACTC 59.907 41.667 0.00 0.00 0.00 3.01
7706 8386 4.000325 GGCTGAAAACAAAACAACCAACT 59.000 39.130 0.00 0.00 0.00 3.16
7707 8387 4.000325 AGGCTGAAAACAAAACAACCAAC 59.000 39.130 0.00 0.00 0.00 3.77
7708 8388 3.999663 CAGGCTGAAAACAAAACAACCAA 59.000 39.130 9.42 0.00 0.00 3.67
7709 8389 3.594134 CAGGCTGAAAACAAAACAACCA 58.406 40.909 9.42 0.00 0.00 3.67
7710 8390 2.351418 GCAGGCTGAAAACAAAACAACC 59.649 45.455 20.86 0.00 0.00 3.77
7711 8391 3.261580 AGCAGGCTGAAAACAAAACAAC 58.738 40.909 20.86 0.00 0.00 3.32
7712 8392 3.608316 AGCAGGCTGAAAACAAAACAA 57.392 38.095 20.86 0.00 0.00 2.83
7713 8393 4.441356 CCTTAGCAGGCTGAAAACAAAACA 60.441 41.667 20.86 0.00 31.53 2.83
7714 8394 4.051237 CCTTAGCAGGCTGAAAACAAAAC 58.949 43.478 20.86 0.00 31.53 2.43
7715 8395 3.957497 TCCTTAGCAGGCTGAAAACAAAA 59.043 39.130 20.86 0.00 40.58 2.44
7716 8396 3.561143 TCCTTAGCAGGCTGAAAACAAA 58.439 40.909 20.86 1.34 40.58 2.83
7717 8397 3.149196 CTCCTTAGCAGGCTGAAAACAA 58.851 45.455 20.86 2.76 40.58 2.83
7718 8398 2.371841 TCTCCTTAGCAGGCTGAAAACA 59.628 45.455 20.86 0.14 40.58 2.83
7719 8399 3.006247 CTCTCCTTAGCAGGCTGAAAAC 58.994 50.000 20.86 0.00 40.58 2.43
7720 8400 2.639839 ACTCTCCTTAGCAGGCTGAAAA 59.360 45.455 20.86 10.16 40.58 2.29
7721 8401 2.260822 ACTCTCCTTAGCAGGCTGAAA 58.739 47.619 20.86 10.54 40.58 2.69
7722 8402 1.944177 ACTCTCCTTAGCAGGCTGAA 58.056 50.000 20.86 3.26 40.58 3.02
7723 8403 3.699798 ACTCTCCTTAGCAGGCTGA 57.300 52.632 20.86 0.00 40.58 4.26



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.