Multiple sequence alignment - TraesCS6D01G237000
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS6D01G237000
chr6D
100.000
3810
0
0
3933
7742
335065715
335061906
0.000000e+00
7036.0
1
TraesCS6D01G237000
chr6D
100.000
3669
0
0
1
3669
335069647
335065979
0.000000e+00
6776.0
2
TraesCS6D01G237000
chr6D
98.473
131
1
1
7613
7742
12131846
12131716
6.040000e-56
230.0
3
TraesCS6D01G237000
chr6D
97.710
131
2
1
7613
7742
454662669
454662799
2.810000e-54
224.0
4
TraesCS6D01G237000
chr6D
93.701
127
7
1
7616
7741
344059417
344059543
1.030000e-43
189.0
5
TraesCS6D01G237000
chr6B
95.803
3336
77
15
357
3669
485536507
485539802
0.000000e+00
5326.0
6
TraesCS6D01G237000
chr6B
97.982
2280
40
2
3933
6209
485539897
485542173
0.000000e+00
3951.0
7
TraesCS6D01G237000
chr6B
97.171
1131
29
2
6182
7309
485542174
485543304
0.000000e+00
1908.0
8
TraesCS6D01G237000
chr6B
94.371
302
11
2
7308
7607
485543331
485543628
7.080000e-125
459.0
9
TraesCS6D01G237000
chr6B
93.077
130
8
1
7613
7741
690342955
690342826
1.030000e-43
189.0
10
TraesCS6D01G237000
chr6B
96.104
77
3
0
1577
1653
32495581
32495505
8.160000e-25
126.0
11
TraesCS6D01G237000
chr6A
95.060
2571
81
15
438
2981
474334647
474332096
0.000000e+00
4002.0
12
TraesCS6D01G237000
chr6A
94.346
1804
55
13
5845
7607
474328745
474326948
0.000000e+00
2723.0
13
TraesCS6D01G237000
chr6A
97.737
928
11
5
3952
4870
474330932
474330006
0.000000e+00
1589.0
14
TraesCS6D01G237000
chr6A
96.829
946
30
0
4902
5847
474330011
474329066
0.000000e+00
1581.0
15
TraesCS6D01G237000
chr6A
97.380
687
18
0
2979
3665
474331944
474331258
0.000000e+00
1170.0
16
TraesCS6D01G237000
chr6A
96.319
326
9
1
1
323
474335028
474334703
4.110000e-147
532.0
17
TraesCS6D01G237000
chr6A
96.667
60
1
1
357
415
474334707
474334648
1.780000e-16
99.0
18
TraesCS6D01G237000
chr2B
75.789
570
94
28
6401
6938
600744876
600745433
1.670000e-61
248.0
19
TraesCS6D01G237000
chr2B
83.824
136
21
1
1528
1663
600740645
600740779
2.270000e-25
128.0
20
TraesCS6D01G237000
chr2A
75.218
573
96
30
6401
6938
654912418
654912979
6.040000e-56
230.0
21
TraesCS6D01G237000
chr2A
94.805
77
4
0
7665
7741
716907658
716907734
3.790000e-23
121.0
22
TraesCS6D01G237000
chr2A
91.781
73
5
1
1362
1433
160935801
160935873
4.940000e-17
100.0
23
TraesCS6D01G237000
chr3D
95.455
132
5
1
7612
7742
559132477
559132346
7.870000e-50
209.0
24
TraesCS6D01G237000
chr7A
92.308
130
9
1
7613
7741
540001756
540001885
4.770000e-42
183.0
25
TraesCS6D01G237000
chr7A
86.179
123
15
2
1532
1653
124070544
124070423
1.750000e-26
132.0
26
TraesCS6D01G237000
chr4A
91.406
128
7
2
7615
7741
140298088
140298212
1.030000e-38
172.0
27
TraesCS6D01G237000
chr2D
95.000
100
4
1
7644
7742
13199635
13199536
1.040000e-33
156.0
28
TraesCS6D01G237000
chr2D
83.824
136
21
1
1528
1663
511688582
511688716
2.270000e-25
128.0
29
TraesCS6D01G237000
chr2D
91.304
46
2
1
6866
6911
511693426
511693469
2.330000e-05
62.1
30
TraesCS6D01G237000
chr1D
85.484
124
12
6
1532
1652
278109818
278109698
2.930000e-24
124.0
31
TraesCS6D01G237000
chr1B
85.366
123
14
4
1532
1652
377969153
377969033
2.930000e-24
124.0
32
TraesCS6D01G237000
chr1A
85.366
123
14
4
1532
1652
350400267
350400147
2.930000e-24
124.0
33
TraesCS6D01G237000
chr5B
80.473
169
15
12
1266
1432
497219177
497219025
6.350000e-21
113.0
34
TraesCS6D01G237000
chr5A
80.473
169
15
10
1266
1432
524911996
524911844
6.350000e-21
113.0
35
TraesCS6D01G237000
chr5D
93.243
74
5
0
1359
1432
412743579
412743506
8.210000e-20
110.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS6D01G237000
chr6D
335061906
335069647
7741
True
6906.000000
7036
100.00000
1
7742
2
chr6D.!!$R2
7741
1
TraesCS6D01G237000
chr6B
485536507
485543628
7121
False
2911.000000
5326
96.33175
357
7607
4
chr6B.!!$F1
7250
2
TraesCS6D01G237000
chr6A
474326948
474335028
8080
True
1670.857143
4002
96.33400
1
7607
7
chr6A.!!$R1
7606
3
TraesCS6D01G237000
chr2B
600744876
600745433
557
False
248.000000
248
75.78900
6401
6938
1
chr2B.!!$F2
537
4
TraesCS6D01G237000
chr2A
654912418
654912979
561
False
230.000000
230
75.21800
6401
6938
1
chr2A.!!$F2
537
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
373
377
0.033109
TAGCCAGAGGAGCTAGCACA
60.033
55.000
18.83
0.00
41.83
4.57
F
714
725
0.178990
GCCTCTCCTCTCCTCTCCTC
60.179
65.000
0.00
0.00
0.00
3.71
F
1693
1725
0.878416
TTTCTCATTTGGCCCGTTCG
59.122
50.000
0.00
0.00
0.00
3.95
F
1694
1726
0.958382
TTCTCATTTGGCCCGTTCGG
60.958
55.000
0.00
4.08
0.00
4.30
F
2678
2719
1.149101
AACAGTCCCCAGTGTCCATT
58.851
50.000
0.00
0.00
34.87
3.16
F
3144
3347
0.317519
GGCGTTGTTTTCGGAAGTGG
60.318
55.000
0.00
0.00
0.00
4.00
F
4180
4423
4.207891
TGCTCTGGATGTAAGTTCTTCC
57.792
45.455
0.00
0.00
33.83
3.46
F
5357
5608
0.251121
TGGCTCGAATTGCAAAGGGA
60.251
50.000
1.71
0.00
0.00
4.20
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1502
1530
0.454117
GGAGAGGACGACGAACGAAC
60.454
60.000
0.00
5.83
45.77
3.95
R
2016
2048
0.843309
TCCAGTGAGGAGTTTGGCAA
59.157
50.000
0.00
0.00
43.07
4.52
R
2696
2737
0.877071
GCAACTCAGGTCACATGTGG
59.123
55.000
25.16
10.69
0.00
4.17
R
3116
3319
1.164041
AAAACAACGCCACTCTCCCG
61.164
55.000
0.00
0.00
0.00
5.14
R
3505
3708
2.061773
CAAAGCTCAGGTACACAGACG
58.938
52.381
0.00
0.00
0.00
4.18
R
5111
5362
0.957395
CCAGCTTGCTCCATTCACGT
60.957
55.000
0.00
0.00
0.00
4.49
R
5920
6497
0.468226
TGGCCCATGATTACGACCTC
59.532
55.000
0.00
0.00
0.00
3.85
R
7221
7863
0.815213
AAAGAGCGTCAGTGCAGCAA
60.815
50.000
0.00
0.00
37.31
3.91
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
47
48
1.725557
ATGCTCTACGCCGTGTCGAT
61.726
55.000
0.00
0.00
38.05
3.59
117
118
8.421249
AGGAGATTCCTCATCACTAATAAGAG
57.579
38.462
0.00
0.00
45.66
2.85
166
167
2.752358
CTGGGAGAGCTGCCACAA
59.248
61.111
6.64
0.00
46.48
3.33
334
338
3.726144
GGCCAGCCAGAGGAGCTT
61.726
66.667
3.12
0.00
38.95
3.74
335
339
2.354343
GCCAGCCAGAGGAGCTTT
59.646
61.111
0.00
0.00
38.95
3.51
336
340
1.303970
GCCAGCCAGAGGAGCTTTT
60.304
57.895
0.00
0.00
38.95
2.27
337
341
0.897401
GCCAGCCAGAGGAGCTTTTT
60.897
55.000
0.00
0.00
38.95
1.94
373
377
0.033109
TAGCCAGAGGAGCTAGCACA
60.033
55.000
18.83
0.00
41.83
4.57
374
378
1.153469
GCCAGAGGAGCTAGCACAC
60.153
63.158
18.83
8.09
31.05
3.82
607
612
0.924363
CTCGTATCGTCGTCTTGCCG
60.924
60.000
0.00
0.00
0.00
5.69
623
628
1.228033
CCGTTTTGACCCTCCCGTT
60.228
57.895
0.00
0.00
0.00
4.44
633
638
2.669240
CTCCCGTTCCCTTCCCAC
59.331
66.667
0.00
0.00
0.00
4.61
706
717
3.223589
GCCCTCGCCTCTCCTCTC
61.224
72.222
0.00
0.00
0.00
3.20
707
718
2.520741
CCCTCGCCTCTCCTCTCC
60.521
72.222
0.00
0.00
0.00
3.71
708
719
2.600731
CCTCGCCTCTCCTCTCCT
59.399
66.667
0.00
0.00
0.00
3.69
709
720
1.528309
CCTCGCCTCTCCTCTCCTC
60.528
68.421
0.00
0.00
0.00
3.71
710
721
1.531748
CTCGCCTCTCCTCTCCTCT
59.468
63.158
0.00
0.00
0.00
3.69
711
722
0.535102
CTCGCCTCTCCTCTCCTCTC
60.535
65.000
0.00
0.00
0.00
3.20
712
723
1.528309
CGCCTCTCCTCTCCTCTCC
60.528
68.421
0.00
0.00
0.00
3.71
713
724
1.930520
GCCTCTCCTCTCCTCTCCT
59.069
63.158
0.00
0.00
0.00
3.69
714
725
0.178990
GCCTCTCCTCTCCTCTCCTC
60.179
65.000
0.00
0.00
0.00
3.71
715
726
1.522900
CCTCTCCTCTCCTCTCCTCT
58.477
60.000
0.00
0.00
0.00
3.69
1436
1464
4.403976
CTCGAAGCGTAAGAGCCC
57.596
61.111
0.00
0.00
43.02
5.19
1437
1465
1.511305
CTCGAAGCGTAAGAGCCCA
59.489
57.895
0.00
0.00
43.02
5.36
1453
1481
1.757682
CCCACGCCCAAAGCTATTTA
58.242
50.000
0.00
0.00
40.39
1.40
1479
1507
1.276705
ACCTTCTCTCTCCGCCTTTTC
59.723
52.381
0.00
0.00
0.00
2.29
1502
1530
1.211212
TCTTGTCCTCTCATGCATGGG
59.789
52.381
25.97
23.70
0.00
4.00
1503
1531
0.994247
TTGTCCTCTCATGCATGGGT
59.006
50.000
25.57
0.00
0.00
4.51
1504
1532
0.994247
TGTCCTCTCATGCATGGGTT
59.006
50.000
25.57
0.00
0.00
4.11
1505
1533
1.065199
TGTCCTCTCATGCATGGGTTC
60.065
52.381
25.57
14.32
0.00
3.62
1691
1723
1.550072
CCATTTCTCATTTGGCCCGTT
59.450
47.619
0.00
0.00
0.00
4.44
1692
1724
2.417243
CCATTTCTCATTTGGCCCGTTC
60.417
50.000
0.00
0.00
0.00
3.95
1693
1725
0.878416
TTTCTCATTTGGCCCGTTCG
59.122
50.000
0.00
0.00
0.00
3.95
1694
1726
0.958382
TTCTCATTTGGCCCGTTCGG
60.958
55.000
0.00
4.08
0.00
4.30
1943
1975
1.525995
CAACCGTGTCTGCACCCTT
60.526
57.895
0.00
0.00
42.39
3.95
1985
2017
2.432628
GTGTCCCTTCTGTCGCCG
60.433
66.667
0.00
0.00
0.00
6.46
2016
2048
2.665000
CACACCTGTCGATGCCCT
59.335
61.111
0.00
0.00
0.00
5.19
2021
2053
2.046023
CTGTCGATGCCCTTGCCA
60.046
61.111
0.00
0.00
36.33
4.92
2219
2251
2.694628
TGTGTTCTTGGAGCTTGCAATT
59.305
40.909
0.00
0.00
0.00
2.32
2281
2313
1.279846
TCCTTTGTGGGTTACGGGATC
59.720
52.381
0.00
0.00
36.20
3.36
2452
2484
1.829222
GACCCTTATGGACGAGGTTCA
59.171
52.381
0.00
0.00
38.00
3.18
2473
2506
4.289672
TCAAGCTCATACTTTTCCCCTTCT
59.710
41.667
0.00
0.00
0.00
2.85
2476
2509
6.582929
AGCTCATACTTTTCCCCTTCTTAT
57.417
37.500
0.00
0.00
0.00
1.73
2678
2719
1.149101
AACAGTCCCCAGTGTCCATT
58.851
50.000
0.00
0.00
34.87
3.16
2679
2720
2.038863
ACAGTCCCCAGTGTCCATTA
57.961
50.000
0.00
0.00
29.26
1.90
2685
2726
2.038426
TCCCCAGTGTCCATTATATGCG
59.962
50.000
0.00
0.00
0.00
4.73
2687
2728
3.307691
CCCCAGTGTCCATTATATGCGAT
60.308
47.826
0.00
0.00
0.00
4.58
2720
2769
5.178061
CACATGTGACCTGAGTTGCTAATA
58.822
41.667
21.64
0.00
0.00
0.98
2730
2779
8.268850
ACCTGAGTTGCTAATATTTACTTGTG
57.731
34.615
0.00
0.00
0.00
3.33
2759
2808
1.738350
CAACAGATGAAGGCTGAGCTG
59.262
52.381
3.72
9.77
36.86
4.24
2889
2938
7.821595
TTATTGAGCAATCAAAATTCTGCTG
57.178
32.000
0.00
0.00
32.94
4.41
3015
3218
1.455786
CTGTAGTTTGCGACTGGAACG
59.544
52.381
3.04
0.00
39.48
3.95
3102
3305
2.226962
TCTCCACTACCACTGTACCC
57.773
55.000
0.00
0.00
0.00
3.69
3105
3308
1.192428
CCACTACCACTGTACCCTCC
58.808
60.000
0.00
0.00
0.00
4.30
3116
3319
5.429130
CACTGTACCCTCCCTTAGAATTTC
58.571
45.833
0.00
0.00
0.00
2.17
3144
3347
0.317519
GGCGTTGTTTTCGGAAGTGG
60.318
55.000
0.00
0.00
0.00
4.00
3505
3708
5.831997
ACACTTGCTCATTTCCTTTGTTAC
58.168
37.500
0.00
0.00
0.00
2.50
3565
3768
8.429641
ACGTTCTTAATATGTGGACCTGATTAT
58.570
33.333
0.00
0.00
0.00
1.28
4180
4423
4.207891
TGCTCTGGATGTAAGTTCTTCC
57.792
45.455
0.00
0.00
33.83
3.46
4827
5078
4.396357
TTCCCATTTTCCATGTACACCT
57.604
40.909
0.00
0.00
0.00
4.00
5144
5395
2.998279
GCTGGATGGTGCAACAGGC
61.998
63.158
11.62
8.28
39.98
4.85
5357
5608
0.251121
TGGCTCGAATTGCAAAGGGA
60.251
50.000
1.71
0.00
0.00
4.20
5425
5676
8.950208
AGTATTACTTAATCTGCTTCTGTTCC
57.050
34.615
0.00
0.00
0.00
3.62
5536
5787
8.093307
CACTATATCAGATATGAACCTGCAACT
58.907
37.037
12.62
0.00
0.00
3.16
5920
6497
2.626840
GAGTCTAGGGCAGCTGAAAAG
58.373
52.381
20.43
8.63
0.00
2.27
6217
6822
0.250295
CCACCTTTCCTCGTGCAGAA
60.250
55.000
0.00
0.00
0.00
3.02
6242
6847
3.951680
TGTGCCATGTACTCTCGATTCTA
59.048
43.478
0.00
0.00
0.00
2.10
6273
6878
9.916397
GTTTAATTGTCAGATACGAACTATTGG
57.084
33.333
0.00
0.00
0.00
3.16
6471
7078
2.764010
TGTTGTATACGCTCCTGTGGAT
59.236
45.455
0.00
0.00
0.00
3.41
6591
7207
4.681978
GAGCACAAGACCGGCGGT
62.682
66.667
34.81
34.81
39.44
5.68
7066
7708
1.345741
TGCAAGTGGAGACTCAGGAAG
59.654
52.381
4.53
0.00
0.00
3.46
7221
7863
1.247567
CCGGCCAAAGTTCAGATTGT
58.752
50.000
2.24
0.00
0.00
2.71
7240
7882
0.815213
TTGCTGCACTGACGCTCTTT
60.815
50.000
0.00
0.00
0.00
2.52
7246
7888
1.597937
GCACTGACGCTCTTTTTGGTG
60.598
52.381
0.00
0.00
0.00
4.17
7272
7914
1.470098
CTTTGGTCATGTAGGTGCTGC
59.530
52.381
0.00
0.00
0.00
5.25
7483
8153
0.110823
GTTTGCACGTACAGCCGAAG
60.111
55.000
5.00
0.00
0.00
3.79
7540
8220
1.581934
TCTTTTCACACTGGACTGCG
58.418
50.000
0.00
0.00
0.00
5.18
7599
8279
3.627395
TTGCACCACCGAAATCTATCT
57.373
42.857
0.00
0.00
0.00
1.98
7607
8287
4.878397
CCACCGAAATCTATCTGCTTTTCT
59.122
41.667
0.00
0.00
0.00
2.52
7608
8288
5.355350
CCACCGAAATCTATCTGCTTTTCTT
59.645
40.000
0.00
0.00
0.00
2.52
7609
8289
6.127897
CCACCGAAATCTATCTGCTTTTCTTT
60.128
38.462
0.00
0.00
0.00
2.52
7610
8290
7.308435
CACCGAAATCTATCTGCTTTTCTTTT
58.692
34.615
0.00
0.00
0.00
2.27
7611
8291
7.809806
CACCGAAATCTATCTGCTTTTCTTTTT
59.190
33.333
0.00
0.00
0.00
1.94
7612
8292
8.023706
ACCGAAATCTATCTGCTTTTCTTTTTC
58.976
33.333
0.00
0.00
0.00
2.29
7613
8293
7.217070
CCGAAATCTATCTGCTTTTCTTTTTCG
59.783
37.037
0.00
0.00
40.54
3.46
7614
8294
7.217070
CGAAATCTATCTGCTTTTCTTTTTCGG
59.783
37.037
0.00
0.00
38.49
4.30
7615
8295
7.454260
AATCTATCTGCTTTTCTTTTTCGGT
57.546
32.000
0.00
0.00
0.00
4.69
7616
8296
6.241207
TCTATCTGCTTTTCTTTTTCGGTG
57.759
37.500
0.00
0.00
0.00
4.94
7617
8297
5.995282
TCTATCTGCTTTTCTTTTTCGGTGA
59.005
36.000
0.00
0.00
0.00
4.02
7618
8298
4.287238
TCTGCTTTTCTTTTTCGGTGAC
57.713
40.909
0.00
0.00
0.00
3.67
7633
8313
3.999229
GGTGACGCTAAATCTCAGTTG
57.001
47.619
0.00
0.00
0.00
3.16
7634
8314
3.585862
GGTGACGCTAAATCTCAGTTGA
58.414
45.455
0.00
0.00
0.00
3.18
7635
8315
3.368236
GGTGACGCTAAATCTCAGTTGAC
59.632
47.826
0.00
0.00
0.00
3.18
7636
8316
4.238514
GTGACGCTAAATCTCAGTTGACT
58.761
43.478
0.00
0.00
0.00
3.41
7637
8317
4.090642
GTGACGCTAAATCTCAGTTGACTG
59.909
45.833
4.77
4.77
45.08
3.51
7648
8328
3.371102
CAGTTGACTGAGACTTCGGAA
57.629
47.619
5.19
0.00
46.59
4.30
7649
8329
3.312828
CAGTTGACTGAGACTTCGGAAG
58.687
50.000
15.96
15.96
46.59
3.46
7650
8330
2.959707
AGTTGACTGAGACTTCGGAAGT
59.040
45.455
22.59
22.59
46.38
3.01
7651
8331
5.084132
CAGTTGACTGAGACTTCGGAAGTC
61.084
50.000
33.31
33.31
47.00
3.01
7660
8340
3.372660
ACTTCGGAAGTCTCAGTCAAC
57.627
47.619
17.38
0.00
37.02
3.18
7661
8341
2.287668
ACTTCGGAAGTCTCAGTCAACG
60.288
50.000
17.38
0.00
37.02
4.10
7662
8342
1.315690
TCGGAAGTCTCAGTCAACGT
58.684
50.000
0.00
0.00
0.00
3.99
7663
8343
1.001706
TCGGAAGTCTCAGTCAACGTG
60.002
52.381
0.00
0.00
0.00
4.49
7664
8344
1.269102
CGGAAGTCTCAGTCAACGTGT
60.269
52.381
0.00
0.00
0.00
4.49
7665
8345
2.395654
GGAAGTCTCAGTCAACGTGTC
58.604
52.381
0.00
0.00
0.00
3.67
7666
8346
2.223735
GGAAGTCTCAGTCAACGTGTCA
60.224
50.000
0.00
0.00
0.00
3.58
7667
8347
2.783828
AGTCTCAGTCAACGTGTCAG
57.216
50.000
0.00
0.00
0.00
3.51
7668
8348
1.132588
GTCTCAGTCAACGTGTCAGC
58.867
55.000
0.00
0.00
0.00
4.26
7669
8349
0.032130
TCTCAGTCAACGTGTCAGCC
59.968
55.000
0.00
0.00
0.00
4.85
7670
8350
1.278172
CTCAGTCAACGTGTCAGCCG
61.278
60.000
0.00
0.00
0.00
5.52
7671
8351
1.591594
CAGTCAACGTGTCAGCCGT
60.592
57.895
0.00
0.00
40.92
5.68
7672
8352
0.318360
CAGTCAACGTGTCAGCCGTA
60.318
55.000
0.00
0.00
37.61
4.02
7673
8353
0.601558
AGTCAACGTGTCAGCCGTAT
59.398
50.000
0.00
0.00
37.61
3.06
7674
8354
0.713883
GTCAACGTGTCAGCCGTATG
59.286
55.000
0.00
0.00
37.61
2.39
7675
8355
0.599060
TCAACGTGTCAGCCGTATGA
59.401
50.000
0.00
0.00
37.61
2.15
7676
8356
1.203758
TCAACGTGTCAGCCGTATGAT
59.796
47.619
0.00
0.00
37.61
2.45
7677
8357
1.999735
CAACGTGTCAGCCGTATGATT
59.000
47.619
0.00
0.00
37.61
2.57
7678
8358
3.119424
TCAACGTGTCAGCCGTATGATTA
60.119
43.478
0.00
0.00
37.61
1.75
7679
8359
3.728076
ACGTGTCAGCCGTATGATTAT
57.272
42.857
0.00
0.00
36.65
1.28
7680
8360
4.054780
ACGTGTCAGCCGTATGATTATT
57.945
40.909
0.00
0.00
36.65
1.40
7681
8361
5.190992
ACGTGTCAGCCGTATGATTATTA
57.809
39.130
0.00
0.00
36.65
0.98
7682
8362
4.980434
ACGTGTCAGCCGTATGATTATTAC
59.020
41.667
0.00
0.00
36.65
1.89
7683
8363
5.220381
CGTGTCAGCCGTATGATTATTACT
58.780
41.667
0.00
0.00
0.00
2.24
7684
8364
5.690409
CGTGTCAGCCGTATGATTATTACTT
59.310
40.000
0.00
0.00
0.00
2.24
7685
8365
6.345803
CGTGTCAGCCGTATGATTATTACTTG
60.346
42.308
0.00
0.00
0.00
3.16
7686
8366
5.465390
TGTCAGCCGTATGATTATTACTTGC
59.535
40.000
0.00
0.00
0.00
4.01
7687
8367
5.696724
GTCAGCCGTATGATTATTACTTGCT
59.303
40.000
0.00
0.00
0.00
3.91
7688
8368
6.202954
GTCAGCCGTATGATTATTACTTGCTT
59.797
38.462
0.00
0.00
0.00
3.91
7689
8369
6.765989
TCAGCCGTATGATTATTACTTGCTTT
59.234
34.615
0.00
0.00
0.00
3.51
7690
8370
7.929245
TCAGCCGTATGATTATTACTTGCTTTA
59.071
33.333
0.00
0.00
0.00
1.85
7691
8371
8.556194
CAGCCGTATGATTATTACTTGCTTTAA
58.444
33.333
0.00
0.00
0.00
1.52
7692
8372
8.774586
AGCCGTATGATTATTACTTGCTTTAAG
58.225
33.333
0.00
0.00
42.30
1.85
7693
8373
8.770828
GCCGTATGATTATTACTTGCTTTAAGA
58.229
33.333
0.00
0.00
39.76
2.10
7702
8382
9.820229
TTATTACTTGCTTTAAGATTCGTGTTG
57.180
29.630
0.00
0.00
39.76
3.33
7703
8383
5.108385
ACTTGCTTTAAGATTCGTGTTGG
57.892
39.130
0.00
0.00
39.76
3.77
7704
8384
4.819630
ACTTGCTTTAAGATTCGTGTTGGA
59.180
37.500
0.00
0.00
39.76
3.53
7705
8385
5.049405
ACTTGCTTTAAGATTCGTGTTGGAG
60.049
40.000
0.00
0.00
39.76
3.86
7706
8386
4.637276
TGCTTTAAGATTCGTGTTGGAGA
58.363
39.130
0.00
0.00
0.00
3.71
7707
8387
4.690748
TGCTTTAAGATTCGTGTTGGAGAG
59.309
41.667
0.00
0.00
0.00
3.20
7708
8388
4.691216
GCTTTAAGATTCGTGTTGGAGAGT
59.309
41.667
0.00
0.00
0.00
3.24
7709
8389
5.179555
GCTTTAAGATTCGTGTTGGAGAGTT
59.820
40.000
0.00
0.00
0.00
3.01
7710
8390
6.539649
TTTAAGATTCGTGTTGGAGAGTTG
57.460
37.500
0.00
0.00
0.00
3.16
7711
8391
3.045601
AGATTCGTGTTGGAGAGTTGG
57.954
47.619
0.00
0.00
0.00
3.77
7712
8392
2.368875
AGATTCGTGTTGGAGAGTTGGT
59.631
45.455
0.00
0.00
0.00
3.67
7713
8393
2.702592
TTCGTGTTGGAGAGTTGGTT
57.297
45.000
0.00
0.00
0.00
3.67
7714
8394
1.948104
TCGTGTTGGAGAGTTGGTTG
58.052
50.000
0.00
0.00
0.00
3.77
7715
8395
1.208535
TCGTGTTGGAGAGTTGGTTGT
59.791
47.619
0.00
0.00
0.00
3.32
7716
8396
2.014128
CGTGTTGGAGAGTTGGTTGTT
58.986
47.619
0.00
0.00
0.00
2.83
7717
8397
2.422127
CGTGTTGGAGAGTTGGTTGTTT
59.578
45.455
0.00
0.00
0.00
2.83
7718
8398
3.119637
CGTGTTGGAGAGTTGGTTGTTTT
60.120
43.478
0.00
0.00
0.00
2.43
7719
8399
4.173256
GTGTTGGAGAGTTGGTTGTTTTG
58.827
43.478
0.00
0.00
0.00
2.44
7720
8400
3.829601
TGTTGGAGAGTTGGTTGTTTTGT
59.170
39.130
0.00
0.00
0.00
2.83
7721
8401
4.282195
TGTTGGAGAGTTGGTTGTTTTGTT
59.718
37.500
0.00
0.00
0.00
2.83
7722
8402
5.221541
TGTTGGAGAGTTGGTTGTTTTGTTT
60.222
36.000
0.00
0.00
0.00
2.83
7723
8403
5.476091
TGGAGAGTTGGTTGTTTTGTTTT
57.524
34.783
0.00
0.00
0.00
2.43
7724
8404
5.474825
TGGAGAGTTGGTTGTTTTGTTTTC
58.525
37.500
0.00
0.00
0.00
2.29
7725
8405
5.011125
TGGAGAGTTGGTTGTTTTGTTTTCA
59.989
36.000
0.00
0.00
0.00
2.69
7726
8406
5.576774
GGAGAGTTGGTTGTTTTGTTTTCAG
59.423
40.000
0.00
0.00
0.00
3.02
7727
8407
4.929211
AGAGTTGGTTGTTTTGTTTTCAGC
59.071
37.500
0.00
0.00
0.00
4.26
7728
8408
4.000325
AGTTGGTTGTTTTGTTTTCAGCC
59.000
39.130
0.00
0.00
34.01
4.85
7729
8409
3.971245
TGGTTGTTTTGTTTTCAGCCT
57.029
38.095
0.00
0.00
34.41
4.58
7730
8410
3.594134
TGGTTGTTTTGTTTTCAGCCTG
58.406
40.909
0.00
0.00
34.41
4.85
7731
8411
2.351418
GGTTGTTTTGTTTTCAGCCTGC
59.649
45.455
0.00
0.00
31.45
4.85
7732
8412
3.261580
GTTGTTTTGTTTTCAGCCTGCT
58.738
40.909
0.00
0.00
0.00
4.24
7733
8413
4.429108
GTTGTTTTGTTTTCAGCCTGCTA
58.571
39.130
0.00
0.00
0.00
3.49
7734
8414
4.727507
TGTTTTGTTTTCAGCCTGCTAA
57.272
36.364
0.00
0.00
0.00
3.09
7735
8415
4.681744
TGTTTTGTTTTCAGCCTGCTAAG
58.318
39.130
0.00
0.00
0.00
2.18
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
47
48
5.394738
TGACTCTCTCTTTCTTCCCAAGTA
58.605
41.667
0.00
0.00
0.00
2.24
117
118
8.833231
TGGAGTAAATCAGATTTATTCGGATC
57.167
34.615
22.64
14.19
40.37
3.36
166
167
3.252215
TGCGAATGATTTTTCAGACCGTT
59.748
39.130
0.00
0.00
0.00
4.44
236
240
1.741770
CGTGGGCTGCTCACTAACC
60.742
63.158
28.21
6.50
33.31
2.85
318
322
0.897401
AAAAAGCTCCTCTGGCTGGC
60.897
55.000
0.00
0.00
40.19
4.85
319
323
3.353342
AAAAAGCTCCTCTGGCTGG
57.647
52.632
0.00
0.00
40.19
4.85
341
345
2.548057
CTCTGGCTAGCACGTTCAAAAA
59.452
45.455
18.24
0.00
0.00
1.94
342
346
2.143122
CTCTGGCTAGCACGTTCAAAA
58.857
47.619
18.24
0.00
0.00
2.44
343
347
1.608025
CCTCTGGCTAGCACGTTCAAA
60.608
52.381
18.24
0.00
0.00
2.69
344
348
0.037326
CCTCTGGCTAGCACGTTCAA
60.037
55.000
18.24
0.00
0.00
2.69
345
349
0.898326
TCCTCTGGCTAGCACGTTCA
60.898
55.000
18.24
3.62
0.00
3.18
346
350
0.179124
CTCCTCTGGCTAGCACGTTC
60.179
60.000
18.24
0.00
0.00
3.95
347
351
1.893786
CTCCTCTGGCTAGCACGTT
59.106
57.895
18.24
0.00
0.00
3.99
348
352
2.716017
GCTCCTCTGGCTAGCACGT
61.716
63.158
18.24
0.00
36.26
4.49
349
353
1.103987
TAGCTCCTCTGGCTAGCACG
61.104
60.000
18.24
6.61
40.74
5.34
350
354
2.814023
TAGCTCCTCTGGCTAGCAC
58.186
57.895
18.24
6.66
40.74
4.40
607
612
0.892358
GGGAACGGGAGGGTCAAAAC
60.892
60.000
0.00
0.00
0.00
2.43
705
716
6.336930
AGGATTAGAATAAGGAGAGGAGAGGA
59.663
42.308
0.00
0.00
0.00
3.71
706
717
6.561294
AGGATTAGAATAAGGAGAGGAGAGG
58.439
44.000
0.00
0.00
0.00
3.69
707
718
6.663523
GGAGGATTAGAATAAGGAGAGGAGAG
59.336
46.154
0.00
0.00
0.00
3.20
708
719
6.469533
GGGAGGATTAGAATAAGGAGAGGAGA
60.470
46.154
0.00
0.00
0.00
3.71
709
720
5.719563
GGGAGGATTAGAATAAGGAGAGGAG
59.280
48.000
0.00
0.00
0.00
3.69
710
721
5.461317
GGGGAGGATTAGAATAAGGAGAGGA
60.461
48.000
0.00
0.00
0.00
3.71
711
722
4.780554
GGGGAGGATTAGAATAAGGAGAGG
59.219
50.000
0.00
0.00
0.00
3.69
712
723
5.660533
AGGGGAGGATTAGAATAAGGAGAG
58.339
45.833
0.00
0.00
0.00
3.20
713
724
5.656420
GAGGGGAGGATTAGAATAAGGAGA
58.344
45.833
0.00
0.00
0.00
3.71
714
725
4.464597
CGAGGGGAGGATTAGAATAAGGAG
59.535
50.000
0.00
0.00
0.00
3.69
715
726
4.417437
CGAGGGGAGGATTAGAATAAGGA
58.583
47.826
0.00
0.00
0.00
3.36
781
792
4.098196
CCTCTTTCTACTACCACTGCTACC
59.902
50.000
0.00
0.00
0.00
3.18
861
876
2.125512
GAATCCTCGGCTGCGTGT
60.126
61.111
0.00
0.00
0.00
4.49
1453
1481
1.479709
CGGAGAGAGAAGGTGGATGT
58.520
55.000
0.00
0.00
0.00
3.06
1479
1507
0.907486
TGCATGAGAGGACAAGAGGG
59.093
55.000
0.00
0.00
0.00
4.30
1502
1530
0.454117
GGAGAGGACGACGAACGAAC
60.454
60.000
0.00
5.83
45.77
3.95
1503
1531
1.871772
GGAGAGGACGACGAACGAA
59.128
57.895
0.00
0.00
45.77
3.85
1504
1532
2.385875
CGGAGAGGACGACGAACGA
61.386
63.158
0.00
0.00
45.77
3.85
1691
1723
3.060020
GATTCGCACGAGACCCCGA
62.060
63.158
0.00
0.00
0.00
5.14
1692
1724
2.582498
GATTCGCACGAGACCCCG
60.582
66.667
0.00
0.00
0.00
5.73
1693
1725
2.202892
GGATTCGCACGAGACCCC
60.203
66.667
0.00
0.00
0.00
4.95
1694
1726
1.519455
CAGGATTCGCACGAGACCC
60.519
63.158
11.83
6.64
0.00
4.46
2016
2048
0.843309
TCCAGTGAGGAGTTTGGCAA
59.157
50.000
0.00
0.00
43.07
4.52
2163
2195
8.872888
ATGTCCACCATAGATGCTAAAGCAGG
62.873
46.154
10.83
8.06
42.92
4.85
2177
2209
3.055167
CAGACCTGTCAATGTCCACCATA
60.055
47.826
0.00
0.00
31.97
2.74
2219
2251
2.677836
GACAAGTTCATCCATTGCGCTA
59.322
45.455
9.73
0.00
0.00
4.26
2281
2313
1.852067
CTTGTCCGGAAAACCAGGCG
61.852
60.000
5.23
0.00
0.00
5.52
2452
2484
4.936685
AGAAGGGGAAAAGTATGAGCTT
57.063
40.909
0.00
0.00
0.00
3.74
2507
2540
9.632807
GGAGAAACATCAGTATAGTAAGCATAG
57.367
37.037
0.00
0.00
0.00
2.23
2520
2553
6.491062
TGTGAAATGAATGGAGAAACATCAGT
59.509
34.615
0.00
0.00
0.00
3.41
2529
2562
3.614092
GCCTCTGTGAAATGAATGGAGA
58.386
45.455
0.00
0.00
0.00
3.71
2696
2737
0.877071
GCAACTCAGGTCACATGTGG
59.123
55.000
25.16
10.69
0.00
4.17
2720
2769
7.319646
TCTGTTGCAAGAAAACACAAGTAAAT
58.680
30.769
0.00
0.00
34.02
1.40
2730
2779
3.737774
GCCTTCATCTGTTGCAAGAAAAC
59.262
43.478
0.00
0.00
0.00
2.43
2867
2916
4.630069
GCAGCAGAATTTTGATTGCTCAAT
59.370
37.500
14.60
0.00
44.49
2.57
2889
2938
4.783621
TGAGCCTGCGGATGTGGC
62.784
66.667
0.00
0.00
46.42
5.01
2904
2953
3.391296
AGCCTCCTACACTTCAAGTTTGA
59.609
43.478
0.00
0.00
34.92
2.69
3015
3218
3.064271
TGACCAGTTACTTTCGTGCAAAC
59.936
43.478
0.00
0.00
0.00
2.93
3038
3241
3.261981
TCTAATGCTCCCGGAAAACTC
57.738
47.619
0.73
0.00
0.00
3.01
3105
3308
3.798202
CCACTCTCCCGAAATTCTAAGG
58.202
50.000
0.00
0.00
0.00
2.69
3116
3319
1.164041
AAAACAACGCCACTCTCCCG
61.164
55.000
0.00
0.00
0.00
5.14
3505
3708
2.061773
CAAAGCTCAGGTACACAGACG
58.938
52.381
0.00
0.00
0.00
4.18
3565
3768
7.279758
CCAGTTTTTAAAGCAAATCAGTTTCCA
59.720
33.333
0.00
0.00
0.00
3.53
3941
4144
5.212934
CGTACATATAAGACAGCGTGTGAT
58.787
41.667
0.00
0.00
0.00
3.06
4036
4279
3.360867
TCTTGTCTGCAAACTCCCAAAA
58.639
40.909
0.00
0.00
33.73
2.44
4180
4423
8.958175
TGAAAACGGCTTGTGTATAAATAAAG
57.042
30.769
0.00
0.00
0.00
1.85
4459
4710
6.748132
AGTGCAGAGATTAGATAGCTCTTTC
58.252
40.000
0.00
0.00
36.91
2.62
4827
5078
5.181245
GGCATAGAAACAGTGAGCTTTACAA
59.819
40.000
0.00
0.00
0.00
2.41
5111
5362
0.957395
CCAGCTTGCTCCATTCACGT
60.957
55.000
0.00
0.00
0.00
4.49
5152
5403
1.004595
CATGACACGCACATCCTCAG
58.995
55.000
0.00
0.00
0.00
3.35
5357
5608
5.765182
GGATACCGAATTTCCATTCTGATGT
59.235
40.000
0.00
0.00
37.27
3.06
5515
5766
8.579850
AAAAAGTTGCAGGTTCATATCTGATA
57.420
30.769
0.00
0.00
33.11
2.15
5631
5882
9.781834
CGTAAAATGGAGTGCTAAATCATTTTA
57.218
29.630
12.57
12.57
42.52
1.52
5644
5895
5.924475
AGAAAGTGACGTAAAATGGAGTG
57.076
39.130
0.00
0.00
0.00
3.51
5920
6497
0.468226
TGGCCCATGATTACGACCTC
59.532
55.000
0.00
0.00
0.00
3.85
6242
6847
9.052759
AGTTCGTATCTGACAATTAAACAGTTT
57.947
29.630
3.49
3.49
33.93
2.66
6273
6878
4.309099
TGTTGAAATTTTGATGGAGCAGC
58.691
39.130
0.00
0.00
0.00
5.25
6353
6958
8.840321
GCAGCAGAAGGTATGAATAATTAGAAA
58.160
33.333
0.00
0.00
0.00
2.52
6354
6959
7.992608
TGCAGCAGAAGGTATGAATAATTAGAA
59.007
33.333
0.00
0.00
0.00
2.10
6591
7207
1.830587
ATGCCACGGTCAGCAGAGAA
61.831
55.000
8.20
0.00
43.38
2.87
7066
7708
2.483889
GCACTAGTAGATCAACCCAGCC
60.484
54.545
3.59
0.00
0.00
4.85
7221
7863
0.815213
AAAGAGCGTCAGTGCAGCAA
60.815
50.000
0.00
0.00
37.31
3.91
7240
7882
3.935818
TGACCAAAGACTACCACCAAA
57.064
42.857
0.00
0.00
0.00
3.28
7246
7888
4.504858
CACCTACATGACCAAAGACTACC
58.495
47.826
0.00
0.00
0.00
3.18
7272
7914
4.039973
TGACCAAACTGTAGGTACTCCAAG
59.960
45.833
5.00
0.00
41.75
3.61
7412
8082
2.845739
CGCCATCGACGTAACAGCG
61.846
63.158
5.30
5.30
38.10
5.18
7540
8220
8.845413
ACTTCTCTTCTGATCCAATTATATGC
57.155
34.615
0.00
0.00
0.00
3.14
7599
8279
2.793237
GCGTCACCGAAAAAGAAAAGCA
60.793
45.455
0.00
0.00
35.63
3.91
7607
8287
4.059511
TGAGATTTAGCGTCACCGAAAAA
58.940
39.130
0.00
0.00
35.63
1.94
7608
8288
3.655486
TGAGATTTAGCGTCACCGAAAA
58.345
40.909
0.00
0.00
35.63
2.29
7609
8289
3.250744
CTGAGATTTAGCGTCACCGAAA
58.749
45.455
0.00
0.00
35.63
3.46
7610
8290
2.230508
ACTGAGATTTAGCGTCACCGAA
59.769
45.455
0.00
0.00
35.63
4.30
7611
8291
1.816835
ACTGAGATTTAGCGTCACCGA
59.183
47.619
0.00
0.00
35.63
4.69
7612
8292
2.279582
ACTGAGATTTAGCGTCACCG
57.720
50.000
0.00
0.00
37.07
4.94
7613
8293
3.368236
GTCAACTGAGATTTAGCGTCACC
59.632
47.826
0.00
0.00
0.00
4.02
7614
8294
4.090642
CAGTCAACTGAGATTTAGCGTCAC
59.909
45.833
4.05
0.00
46.59
3.67
7615
8295
4.237724
CAGTCAACTGAGATTTAGCGTCA
58.762
43.478
4.05
0.00
46.59
4.35
7616
8296
4.831741
CAGTCAACTGAGATTTAGCGTC
57.168
45.455
4.05
0.00
46.59
5.19
7627
8307
5.468367
ACTTCCGAAGTCTCAGTCAACTGA
61.468
45.833
8.03
12.07
43.58
3.41
7628
8308
3.243569
ACTTCCGAAGTCTCAGTCAACTG
60.244
47.826
8.03
3.69
40.54
3.16
7629
8309
2.959707
ACTTCCGAAGTCTCAGTCAACT
59.040
45.455
8.03
0.00
37.02
3.16
7630
8310
3.372660
ACTTCCGAAGTCTCAGTCAAC
57.627
47.619
8.03
0.00
37.02
3.18
7640
8320
2.287668
CGTTGACTGAGACTTCCGAAGT
60.288
50.000
13.75
13.75
46.38
3.01
7641
8321
2.287668
ACGTTGACTGAGACTTCCGAAG
60.288
50.000
6.59
6.59
0.00
3.79
7642
8322
1.679680
ACGTTGACTGAGACTTCCGAA
59.320
47.619
0.00
0.00
0.00
4.30
7643
8323
1.001706
CACGTTGACTGAGACTTCCGA
60.002
52.381
0.00
0.00
0.00
4.55
7644
8324
1.269102
ACACGTTGACTGAGACTTCCG
60.269
52.381
0.00
0.00
0.00
4.30
7645
8325
2.223735
TGACACGTTGACTGAGACTTCC
60.224
50.000
0.00
0.00
0.00
3.46
7646
8326
3.046390
CTGACACGTTGACTGAGACTTC
58.954
50.000
0.00
0.00
0.00
3.01
7647
8327
2.799917
GCTGACACGTTGACTGAGACTT
60.800
50.000
0.00
0.00
0.00
3.01
7648
8328
1.269309
GCTGACACGTTGACTGAGACT
60.269
52.381
0.00
0.00
0.00
3.24
7649
8329
1.132588
GCTGACACGTTGACTGAGAC
58.867
55.000
0.00
0.00
0.00
3.36
7650
8330
0.032130
GGCTGACACGTTGACTGAGA
59.968
55.000
0.00
0.00
0.00
3.27
7651
8331
1.278172
CGGCTGACACGTTGACTGAG
61.278
60.000
0.00
0.00
0.00
3.35
7652
8332
1.299850
CGGCTGACACGTTGACTGA
60.300
57.895
0.00
0.00
0.00
3.41
7653
8333
0.318360
TACGGCTGACACGTTGACTG
60.318
55.000
0.00
0.00
42.70
3.51
7654
8334
0.601558
ATACGGCTGACACGTTGACT
59.398
50.000
0.00
0.00
42.70
3.41
7655
8335
0.713883
CATACGGCTGACACGTTGAC
59.286
55.000
0.00
0.00
42.70
3.18
7656
8336
0.599060
TCATACGGCTGACACGTTGA
59.401
50.000
0.00
0.00
42.70
3.18
7657
8337
1.640428
ATCATACGGCTGACACGTTG
58.360
50.000
0.00
0.00
42.70
4.10
7658
8338
2.380084
AATCATACGGCTGACACGTT
57.620
45.000
0.00
0.00
42.70
3.99
7660
8340
5.220381
AGTAATAATCATACGGCTGACACG
58.780
41.667
0.00
0.00
37.36
4.49
7661
8341
6.564125
GCAAGTAATAATCATACGGCTGACAC
60.564
42.308
0.00
0.00
0.00
3.67
7662
8342
5.465390
GCAAGTAATAATCATACGGCTGACA
59.535
40.000
0.00
0.00
0.00
3.58
7663
8343
5.696724
AGCAAGTAATAATCATACGGCTGAC
59.303
40.000
0.00
0.00
37.38
3.51
7664
8344
5.853936
AGCAAGTAATAATCATACGGCTGA
58.146
37.500
0.00
0.00
37.38
4.26
7665
8345
6.545504
AAGCAAGTAATAATCATACGGCTG
57.454
37.500
0.00
0.00
38.16
4.85
7666
8346
8.671384
TTAAAGCAAGTAATAATCATACGGCT
57.329
30.769
0.00
0.00
39.08
5.52
7667
8347
8.770828
TCTTAAAGCAAGTAATAATCATACGGC
58.229
33.333
0.00
0.00
35.58
5.68
7676
8356
9.820229
CAACACGAATCTTAAAGCAAGTAATAA
57.180
29.630
0.00
0.00
35.58
1.40
7677
8357
8.447833
CCAACACGAATCTTAAAGCAAGTAATA
58.552
33.333
0.00
0.00
35.58
0.98
7678
8358
7.174253
TCCAACACGAATCTTAAAGCAAGTAAT
59.826
33.333
0.00
0.00
35.58
1.89
7679
8359
6.483974
TCCAACACGAATCTTAAAGCAAGTAA
59.516
34.615
0.00
0.00
35.58
2.24
7680
8360
5.992829
TCCAACACGAATCTTAAAGCAAGTA
59.007
36.000
0.00
0.00
35.58
2.24
7681
8361
4.819630
TCCAACACGAATCTTAAAGCAAGT
59.180
37.500
0.00
0.00
35.58
3.16
7682
8362
5.179368
TCTCCAACACGAATCTTAAAGCAAG
59.821
40.000
0.00
0.00
35.38
4.01
7683
8363
5.060506
TCTCCAACACGAATCTTAAAGCAA
58.939
37.500
0.00
0.00
0.00
3.91
7684
8364
4.637276
TCTCCAACACGAATCTTAAAGCA
58.363
39.130
0.00
0.00
0.00
3.91
7685
8365
4.691216
ACTCTCCAACACGAATCTTAAAGC
59.309
41.667
0.00
0.00
0.00
3.51
7686
8366
6.347725
CCAACTCTCCAACACGAATCTTAAAG
60.348
42.308
0.00
0.00
0.00
1.85
7687
8367
5.468746
CCAACTCTCCAACACGAATCTTAAA
59.531
40.000
0.00
0.00
0.00
1.52
7688
8368
4.994852
CCAACTCTCCAACACGAATCTTAA
59.005
41.667
0.00
0.00
0.00
1.85
7689
8369
4.039973
ACCAACTCTCCAACACGAATCTTA
59.960
41.667
0.00
0.00
0.00
2.10
7690
8370
3.181454
ACCAACTCTCCAACACGAATCTT
60.181
43.478
0.00
0.00
0.00
2.40
7691
8371
2.368875
ACCAACTCTCCAACACGAATCT
59.631
45.455
0.00
0.00
0.00
2.40
7692
8372
2.767505
ACCAACTCTCCAACACGAATC
58.232
47.619
0.00
0.00
0.00
2.52
7693
8373
2.878406
CAACCAACTCTCCAACACGAAT
59.122
45.455
0.00
0.00
0.00
3.34
7694
8374
2.285083
CAACCAACTCTCCAACACGAA
58.715
47.619
0.00
0.00
0.00
3.85
7695
8375
1.208535
ACAACCAACTCTCCAACACGA
59.791
47.619
0.00
0.00
0.00
4.35
7696
8376
1.663695
ACAACCAACTCTCCAACACG
58.336
50.000
0.00
0.00
0.00
4.49
7697
8377
4.173256
CAAAACAACCAACTCTCCAACAC
58.827
43.478
0.00
0.00
0.00
3.32
7698
8378
3.829601
ACAAAACAACCAACTCTCCAACA
59.170
39.130
0.00
0.00
0.00
3.33
7699
8379
4.450082
ACAAAACAACCAACTCTCCAAC
57.550
40.909
0.00
0.00
0.00
3.77
7700
8380
5.476091
AAACAAAACAACCAACTCTCCAA
57.524
34.783
0.00
0.00
0.00
3.53
7701
8381
5.011125
TGAAAACAAAACAACCAACTCTCCA
59.989
36.000
0.00
0.00
0.00
3.86
7702
8382
5.474825
TGAAAACAAAACAACCAACTCTCC
58.525
37.500
0.00
0.00
0.00
3.71
7703
8383
5.062183
GCTGAAAACAAAACAACCAACTCTC
59.938
40.000
0.00
0.00
0.00
3.20
7704
8384
4.929211
GCTGAAAACAAAACAACCAACTCT
59.071
37.500
0.00
0.00
0.00
3.24
7705
8385
4.092821
GGCTGAAAACAAAACAACCAACTC
59.907
41.667
0.00
0.00
0.00
3.01
7706
8386
4.000325
GGCTGAAAACAAAACAACCAACT
59.000
39.130
0.00
0.00
0.00
3.16
7707
8387
4.000325
AGGCTGAAAACAAAACAACCAAC
59.000
39.130
0.00
0.00
0.00
3.77
7708
8388
3.999663
CAGGCTGAAAACAAAACAACCAA
59.000
39.130
9.42
0.00
0.00
3.67
7709
8389
3.594134
CAGGCTGAAAACAAAACAACCA
58.406
40.909
9.42
0.00
0.00
3.67
7710
8390
2.351418
GCAGGCTGAAAACAAAACAACC
59.649
45.455
20.86
0.00
0.00
3.77
7711
8391
3.261580
AGCAGGCTGAAAACAAAACAAC
58.738
40.909
20.86
0.00
0.00
3.32
7712
8392
3.608316
AGCAGGCTGAAAACAAAACAA
57.392
38.095
20.86
0.00
0.00
2.83
7713
8393
4.441356
CCTTAGCAGGCTGAAAACAAAACA
60.441
41.667
20.86
0.00
31.53
2.83
7714
8394
4.051237
CCTTAGCAGGCTGAAAACAAAAC
58.949
43.478
20.86
0.00
31.53
2.43
7715
8395
3.957497
TCCTTAGCAGGCTGAAAACAAAA
59.043
39.130
20.86
0.00
40.58
2.44
7716
8396
3.561143
TCCTTAGCAGGCTGAAAACAAA
58.439
40.909
20.86
1.34
40.58
2.83
7717
8397
3.149196
CTCCTTAGCAGGCTGAAAACAA
58.851
45.455
20.86
2.76
40.58
2.83
7718
8398
2.371841
TCTCCTTAGCAGGCTGAAAACA
59.628
45.455
20.86
0.14
40.58
2.83
7719
8399
3.006247
CTCTCCTTAGCAGGCTGAAAAC
58.994
50.000
20.86
0.00
40.58
2.43
7720
8400
2.639839
ACTCTCCTTAGCAGGCTGAAAA
59.360
45.455
20.86
10.16
40.58
2.29
7721
8401
2.260822
ACTCTCCTTAGCAGGCTGAAA
58.739
47.619
20.86
10.54
40.58
2.69
7722
8402
1.944177
ACTCTCCTTAGCAGGCTGAA
58.056
50.000
20.86
3.26
40.58
3.02
7723
8403
3.699798
ACTCTCCTTAGCAGGCTGA
57.300
52.632
20.86
0.00
40.58
4.26
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.