Multiple sequence alignment - TraesCS6D01G236600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G236600 chr6D 100.000 6680 0 0 1 6680 333798501 333805180 0.000000e+00 12336
1 TraesCS6D01G236600 chr6D 96.875 64 2 0 6315 6378 458960020 458959957 2.550000e-19 108
2 TraesCS6D01G236600 chr6B 95.196 4829 171 20 1733 6528 486517920 486513120 0.000000e+00 7576
3 TraesCS6D01G236600 chr6B 93.724 1195 46 17 1 1171 486519817 486518628 0.000000e+00 1764
4 TraesCS6D01G236600 chr6B 89.558 565 38 7 1184 1748 486518484 486517941 0.000000e+00 697
5 TraesCS6D01G236600 chr6B 95.312 64 3 0 6315 6378 394514300 394514237 1.190000e-17 102
6 TraesCS6D01G236600 chr6A 94.587 4563 139 35 1732 6283 473361821 473366286 0.000000e+00 6959
7 TraesCS6D01G236600 chr6A 89.704 1049 41 26 1 1017 473357076 473358089 0.000000e+00 1277
8 TraesCS6D01G236600 chr6A 92.771 747 38 6 1013 1748 473361056 473361797 0.000000e+00 1066
9 TraesCS6D01G236600 chr3D 98.438 64 1 0 6315 6378 308584362 308584425 5.480000e-21 113
10 TraesCS6D01G236600 chrUn 96.875 64 2 0 6315 6378 86474626 86474563 2.550000e-19 108
11 TraesCS6D01G236600 chr7A 96.875 64 2 0 6315 6378 60246464 60246527 2.550000e-19 108
12 TraesCS6D01G236600 chr4B 96.875 64 2 0 6315 6378 209275575 209275638 2.550000e-19 108
13 TraesCS6D01G236600 chr3A 96.875 64 2 0 6315 6378 624952678 624952741 2.550000e-19 108
14 TraesCS6D01G236600 chr1A 96.875 64 2 0 6315 6378 112008316 112008379 2.550000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G236600 chr6D 333798501 333805180 6679 False 12336.000000 12336 100.000 1 6680 1 chr6D.!!$F1 6679
1 TraesCS6D01G236600 chr6B 486513120 486519817 6697 True 3345.666667 7576 92.826 1 6528 3 chr6B.!!$R2 6527
2 TraesCS6D01G236600 chr6A 473357076 473366286 9210 False 3100.666667 6959 92.354 1 6283 3 chr6A.!!$F1 6282

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
529 562 0.391130 TCCTACAGGCATGTTGCGTC 60.391 55.0 10.25 0.0 46.21 5.19 F
1142 4170 0.033781 CTGCTGCTCCTAGATCTGCC 59.966 60.0 5.18 0.0 0.00 4.85 F
1171 4199 0.252513 TGGGCCTCTTGCTAGGTGTA 60.253 55.0 4.53 0.0 39.02 2.90 F
1297 4461 0.460987 GGAGTGCGAGATCCCAACAG 60.461 60.0 0.00 0.0 0.00 3.16 F
2910 6151 0.607489 TAGTACCTATCCCGGCGCTC 60.607 60.0 7.64 0.0 0.00 5.03 F
4101 7352 1.145803 GTAAGCACTCGCGGAAAAGT 58.854 50.0 6.13 0.0 45.49 2.66 F
5323 8574 0.104855 GATAGCAGACACCATCCGCA 59.895 55.0 0.00 0.0 0.00 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1606 4780 0.169672 ATCGCGTACGTGCTTACAGT 59.830 50.000 23.52 1.19 41.18 3.55 R
2093 5311 0.240945 CACAAGTCGGCACAAATCCC 59.759 55.000 0.00 0.00 0.00 3.85 R
2808 6049 0.846693 AGACAGTTCTGCCCCAACTT 59.153 50.000 0.00 0.00 31.40 2.66 R
3009 6256 4.209452 TCACGAAGCAACACAAAGATTC 57.791 40.909 0.00 0.00 0.00 2.52 R
4426 7677 1.134699 TCCTTGCATGCCGAGTAAGAG 60.135 52.381 16.68 6.12 31.42 2.85 R
5442 8693 1.069227 GCCAGGAAAATGACGTGTCAC 60.069 52.381 4.57 0.00 43.11 3.67 R
6608 9863 0.106819 CCCTGGGAAAGATGCAGAGG 60.107 60.000 7.01 0.00 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
213 220 5.133322 ACAATGGAGAGAGAGAGAGAGAGAT 59.867 44.000 0.00 0.00 0.00 2.75
214 221 4.694760 TGGAGAGAGAGAGAGAGAGATG 57.305 50.000 0.00 0.00 0.00 2.90
216 223 3.244700 GGAGAGAGAGAGAGAGAGATGGG 60.245 56.522 0.00 0.00 0.00 4.00
218 225 3.392616 AGAGAGAGAGAGAGAGATGGGTC 59.607 52.174 0.00 0.00 0.00 4.46
219 226 3.392616 GAGAGAGAGAGAGAGATGGGTCT 59.607 52.174 0.00 0.00 37.42 3.85
220 227 3.788142 AGAGAGAGAGAGAGATGGGTCTT 59.212 47.826 0.00 0.00 33.97 3.01
223 230 4.017591 AGAGAGAGAGAGATGGGTCTTTCA 60.018 45.833 0.00 0.00 37.90 2.69
449 474 3.238597 ACCGTAGTGGGGTGTAGTAAAA 58.761 45.455 0.00 0.00 44.64 1.52
450 475 3.645687 ACCGTAGTGGGGTGTAGTAAAAA 59.354 43.478 0.00 0.00 44.64 1.94
529 562 0.391130 TCCTACAGGCATGTTGCGTC 60.391 55.000 10.25 0.00 46.21 5.19
560 593 3.240069 CAAGCAAGATTCTTTTCAGCCG 58.760 45.455 0.00 0.00 0.00 5.52
629 662 7.896811 ACACTGTCAAGTTGTGATAGAATAGA 58.103 34.615 2.11 0.00 45.82 1.98
739 772 2.159000 AGGAAGGACACGAGAAAAACGT 60.159 45.455 0.00 0.00 44.83 3.99
745 778 1.931172 ACACGAGAAAAACGTCCACAG 59.069 47.619 0.00 0.00 42.07 3.66
865 913 1.618861 CTCGCTCCCGCTATTTATCG 58.381 55.000 0.00 0.00 0.00 2.92
1093 4120 1.218316 GACCCACGGTGAGTCATCC 59.782 63.158 16.68 0.00 35.25 3.51
1142 4170 0.033781 CTGCTGCTCCTAGATCTGCC 59.966 60.000 5.18 0.00 0.00 4.85
1144 4172 0.758123 GCTGCTCCTAGATCTGCCTT 59.242 55.000 5.18 0.00 0.00 4.35
1171 4199 0.252513 TGGGCCTCTTGCTAGGTGTA 60.253 55.000 4.53 0.00 39.02 2.90
1172 4200 0.466124 GGGCCTCTTGCTAGGTGTAG 59.534 60.000 0.84 0.00 39.02 2.74
1173 4201 0.466124 GGCCTCTTGCTAGGTGTAGG 59.534 60.000 0.00 0.00 39.02 3.18
1174 4202 1.196012 GCCTCTTGCTAGGTGTAGGT 58.804 55.000 0.00 0.00 39.02 3.08
1175 4203 1.134670 GCCTCTTGCTAGGTGTAGGTG 60.135 57.143 0.00 0.00 39.02 4.00
1176 4204 2.180276 CCTCTTGCTAGGTGTAGGTGT 58.820 52.381 0.00 0.00 31.46 4.16
1180 4208 4.413760 TCTTGCTAGGTGTAGGTGTTAGT 58.586 43.478 0.00 0.00 0.00 2.24
1233 4397 7.630242 TTCTGTGTTTCTTCAGAAATTGTCT 57.370 32.000 5.30 0.00 44.29 3.41
1273 4437 3.366985 GGCGTTCATTTTCTCGGGATTTT 60.367 43.478 0.00 0.00 0.00 1.82
1297 4461 0.460987 GGAGTGCGAGATCCCAACAG 60.461 60.000 0.00 0.00 0.00 3.16
1333 4497 6.017109 TGACACTGCCTCTTGTTCTAAAAATC 60.017 38.462 0.00 0.00 0.00 2.17
1394 4564 7.656707 ATTTGCATTTTCGTCTGCTTAAATT 57.343 28.000 0.00 0.00 39.16 1.82
1467 4641 5.784177 ACCTGAACTCTATAGTGTGTGTTG 58.216 41.667 8.17 0.65 35.62 3.33
1533 4707 0.734253 CGTGGCTCTCAAGGACTTCG 60.734 60.000 0.00 0.00 0.00 3.79
1597 4771 3.442273 CCTCTTGTAGCTATCCGATCTCC 59.558 52.174 0.00 0.00 0.00 3.71
1606 4780 1.410004 ATCCGATCTCCGCCTGTAAA 58.590 50.000 0.00 0.00 36.84 2.01
1699 4873 6.700960 CACTGCAAAAAGTTAACCATCATCAA 59.299 34.615 0.88 0.00 0.00 2.57
1715 4889 8.811017 ACCATCATCAACCATTTTAATTGTACA 58.189 29.630 0.00 0.00 0.00 2.90
1760 4974 5.188555 TGAGATCTCTTAGACCTGTGCAAAT 59.811 40.000 22.95 0.00 0.00 2.32
1804 5019 6.269077 TGGAACTTGTCATTTCAGTCTACCTA 59.731 38.462 0.00 0.00 0.00 3.08
1986 5201 2.790433 TGTTGTTGGAGAAGGGTATGC 58.210 47.619 0.00 0.00 0.00 3.14
2015 5230 4.092821 TGACGTCCTTTTATGCTTGATTCG 59.907 41.667 14.12 0.00 0.00 3.34
2031 5246 3.801594 TGATTCGGTTTTCTTTTGCAAGC 59.198 39.130 0.00 0.00 0.00 4.01
2032 5247 2.217429 TCGGTTTTCTTTTGCAAGCC 57.783 45.000 0.00 0.00 0.00 4.35
2033 5248 1.754226 TCGGTTTTCTTTTGCAAGCCT 59.246 42.857 0.00 0.00 0.00 4.58
2034 5249 2.167487 TCGGTTTTCTTTTGCAAGCCTT 59.833 40.909 0.00 0.00 0.00 4.35
2035 5250 2.935849 CGGTTTTCTTTTGCAAGCCTTT 59.064 40.909 0.00 0.00 0.00 3.11
2036 5251 4.116238 CGGTTTTCTTTTGCAAGCCTTTA 58.884 39.130 0.00 0.00 0.00 1.85
2087 5305 6.959671 TGTGTCATTCCTCAAAACAAAAAC 57.040 33.333 0.00 0.00 0.00 2.43
2093 5311 9.328721 GTCATTCCTCAAAACAAAAACAAAAAG 57.671 29.630 0.00 0.00 0.00 2.27
2162 5380 8.333186 CCTGTTAAGGCGTTATCAAATAGTTAC 58.667 37.037 10.26 0.00 36.56 2.50
2247 5486 4.082463 GCACTATTTTTCCCCGACATTTCA 60.082 41.667 0.00 0.00 0.00 2.69
2580 5819 7.201974 GGCCTCATAACACCTTGTCTATAAGTA 60.202 40.741 0.00 0.00 0.00 2.24
2627 5866 4.377021 ACGCATGGACATATAATTCACGT 58.623 39.130 0.00 0.00 0.00 4.49
2697 5937 9.862149 AAGTTTCCTTATTTTAACAGAGGAAGA 57.138 29.630 8.44 1.42 44.65 2.87
2759 5999 7.339466 AGTTCATGAGCGGAATAAAGGTTATTT 59.661 33.333 3.72 0.00 0.00 1.40
2828 6069 1.729586 AGTTGGGGCAGAACTGTCTA 58.270 50.000 6.39 0.00 35.13 2.59
2855 6096 7.601073 TGATTAGCAGAACTTGTGATTAGTG 57.399 36.000 0.00 0.00 0.00 2.74
2910 6151 0.607489 TAGTACCTATCCCGGCGCTC 60.607 60.000 7.64 0.00 0.00 5.03
2957 6198 7.637631 TGCAAAAGGTTAGTGCATATGAATA 57.362 32.000 6.97 0.00 43.09 1.75
3027 6274 6.545508 TGATATGAATCTTTGTGTTGCTTCG 58.454 36.000 0.00 0.00 32.93 3.79
3064 6311 5.297547 TCAGTCTAAAAGAACTGTTCGCAT 58.702 37.500 14.35 7.40 30.63 4.73
3071 6318 3.111853 AGAACTGTTCGCATGAGTTCA 57.888 42.857 20.27 10.16 40.68 3.18
3094 6341 7.105588 TCATTTGAAGCTGCTATCTTTGACTA 58.894 34.615 0.90 0.00 0.00 2.59
3214 6462 6.168270 AGCTATATGTTCTCTGAACTTCCC 57.832 41.667 11.06 0.00 0.00 3.97
3252 6500 8.446599 TGCATTATATCATTATGCATCAGGAG 57.553 34.615 0.19 0.00 46.89 3.69
3253 6501 8.050930 TGCATTATATCATTATGCATCAGGAGT 58.949 33.333 0.19 0.00 46.89 3.85
3429 6677 2.248248 TGCTCTCCCTCATAATACCCG 58.752 52.381 0.00 0.00 0.00 5.28
3448 6696 5.316987 ACCCGATTTCAACTCAATTCTCTT 58.683 37.500 0.00 0.00 0.00 2.85
3550 6798 8.609483 TCTCTAGGGAGTTTAGTAAGTACTTCA 58.391 37.037 12.39 0.00 40.29 3.02
3683 6931 5.067674 GCAGTCAGGTTATTTCATAATGGCA 59.932 40.000 0.00 0.00 0.00 4.92
3941 7192 6.471233 TCAAACCCATGTTATTTGACAACA 57.529 33.333 10.56 0.00 37.41 3.33
3942 7193 6.878317 TCAAACCCATGTTATTTGACAACAA 58.122 32.000 10.56 0.00 39.22 2.83
3943 7194 6.758886 TCAAACCCATGTTATTTGACAACAAC 59.241 34.615 10.56 5.32 39.22 3.32
3975 7226 2.936498 ACAACAACAACTCTCCTGTTCG 59.064 45.455 0.00 0.00 34.80 3.95
4063 7314 6.397272 TGAGTTGCCAAATGAAATATTGGTC 58.603 36.000 6.43 0.56 46.29 4.02
4101 7352 1.145803 GTAAGCACTCGCGGAAAAGT 58.854 50.000 6.13 0.00 45.49 2.66
4102 7353 1.529865 GTAAGCACTCGCGGAAAAGTT 59.470 47.619 6.13 0.00 45.49 2.66
4267 7518 3.873952 GTGATCCACTATCAGTTGAAGGC 59.126 47.826 0.00 0.00 45.34 4.35
4273 7524 1.839994 CTATCAGTTGAAGGCAGGGGA 59.160 52.381 0.00 0.00 0.00 4.81
4326 7577 3.610040 TGGTGCTAGTGGTAATGTGAG 57.390 47.619 0.00 0.00 0.00 3.51
4426 7677 0.693049 ACACCATCCACCAAGACTCC 59.307 55.000 0.00 0.00 0.00 3.85
4564 7815 4.767578 ATCTATGGATGACAGTTGCAGT 57.232 40.909 0.00 0.00 0.00 4.40
4591 7842 0.527565 CTGCAAATTCCAAGGTCGGG 59.472 55.000 0.00 0.00 0.00 5.14
4928 8179 2.024414 GAACCCAAGGTATGTCATGCC 58.976 52.381 11.78 11.78 33.12 4.40
5058 8309 3.619038 CCGTCTTGAAGGATAACTCAAGC 59.381 47.826 6.89 2.80 39.33 4.01
5211 8462 2.541556 GAGGTATGGTTCAGAAGCGAC 58.458 52.381 7.83 8.01 0.00 5.19
5323 8574 0.104855 GATAGCAGACACCATCCGCA 59.895 55.000 0.00 0.00 0.00 5.69
5420 8671 7.488471 CGAGGTAGAGAAGAAATATTTGTTCGT 59.512 37.037 24.39 19.68 43.02 3.85
5448 8699 3.527641 TTTTTGGCGGGGTGACAC 58.472 55.556 0.00 0.00 32.88 3.67
5465 8717 3.071479 GACACGTCATTTTCCTGGCTTA 58.929 45.455 0.00 0.00 0.00 3.09
5470 8722 4.694037 ACGTCATTTTCCTGGCTTAGTTAC 59.306 41.667 0.00 0.00 0.00 2.50
5693 8948 5.427378 TGAGAGATGACAGTGAACACAAAA 58.573 37.500 7.68 0.00 0.00 2.44
5719 8974 3.912528 TGGAGAAGATCATATTGGGGAGG 59.087 47.826 0.00 0.00 0.00 4.30
5788 9043 3.381949 GCAGGCGTTAATAGGAGTACTG 58.618 50.000 0.00 0.00 0.00 2.74
6273 9528 1.079612 GGATGCCAGGCTTTTGTGC 60.080 57.895 14.15 0.00 0.00 4.57
6297 9552 1.977544 CCGTCGACTCAGAGGGGTT 60.978 63.158 14.70 0.00 41.17 4.11
6307 9562 4.923415 ACTCAGAGGGGTTTTCATAAAGG 58.077 43.478 1.53 0.00 0.00 3.11
6320 9575 6.945938 TTTCATAAAGGGAAGTTTTCGACA 57.054 33.333 0.00 0.00 0.00 4.35
6398 9653 2.512515 GACGGTCCATGCTCAGGC 60.513 66.667 0.00 0.00 39.26 4.85
6417 9672 2.625790 GGCAGGACATGGTGTGTTTTAA 59.374 45.455 0.00 0.00 42.36 1.52
6493 9748 6.821665 CCTGAAACCATAATCTTTTCGGTAGA 59.178 38.462 0.00 0.00 34.92 2.59
6503 9758 6.600882 ATCTTTTCGGTAGACTAAGACCAA 57.399 37.500 0.00 0.00 35.26 3.67
6523 9778 4.638865 CCAATAAACAACAGTAGGTAGGCC 59.361 45.833 0.00 0.00 0.00 5.19
6528 9783 1.328430 AACAGTAGGTAGGCCGAGGC 61.328 60.000 5.37 5.37 40.50 4.70
6538 9793 4.579127 GCCGAGGCCCATTAATGT 57.421 55.556 14.25 0.00 34.56 2.71
6539 9794 2.807247 GCCGAGGCCCATTAATGTT 58.193 52.632 14.25 0.00 34.56 2.71
6540 9795 1.111277 GCCGAGGCCCATTAATGTTT 58.889 50.000 14.25 0.00 34.56 2.83
6541 9796 1.067060 GCCGAGGCCCATTAATGTTTC 59.933 52.381 14.25 5.46 34.56 2.78
6542 9797 1.333619 CCGAGGCCCATTAATGTTTCG 59.666 52.381 14.25 14.94 0.00 3.46
6543 9798 2.014128 CGAGGCCCATTAATGTTTCGT 58.986 47.619 14.25 4.60 0.00 3.85
6544 9799 2.422127 CGAGGCCCATTAATGTTTCGTT 59.578 45.455 14.25 0.00 0.00 3.85
6545 9800 3.730662 CGAGGCCCATTAATGTTTCGTTG 60.731 47.826 14.25 5.00 0.00 4.10
6546 9801 2.094234 AGGCCCATTAATGTTTCGTTGC 60.094 45.455 14.25 5.20 0.00 4.17
6547 9802 2.094234 GGCCCATTAATGTTTCGTTGCT 60.094 45.455 14.25 0.00 0.00 3.91
6548 9803 3.584834 GCCCATTAATGTTTCGTTGCTT 58.415 40.909 14.25 0.00 0.00 3.91
6549 9804 3.993736 GCCCATTAATGTTTCGTTGCTTT 59.006 39.130 14.25 0.00 0.00 3.51
6550 9805 4.450757 GCCCATTAATGTTTCGTTGCTTTT 59.549 37.500 14.25 0.00 0.00 2.27
6551 9806 5.049749 GCCCATTAATGTTTCGTTGCTTTTT 60.050 36.000 14.25 0.00 0.00 1.94
6552 9807 6.146347 GCCCATTAATGTTTCGTTGCTTTTTA 59.854 34.615 14.25 0.00 0.00 1.52
6553 9808 7.148490 GCCCATTAATGTTTCGTTGCTTTTTAT 60.148 33.333 14.25 0.00 0.00 1.40
6554 9809 8.167985 CCCATTAATGTTTCGTTGCTTTTTATG 58.832 33.333 14.25 0.00 0.00 1.90
6555 9810 8.167985 CCATTAATGTTTCGTTGCTTTTTATGG 58.832 33.333 14.25 0.00 0.00 2.74
6556 9811 8.707839 CATTAATGTTTCGTTGCTTTTTATGGT 58.292 29.630 7.32 0.00 0.00 3.55
6557 9812 6.763303 AATGTTTCGTTGCTTTTTATGGTC 57.237 33.333 0.00 0.00 0.00 4.02
6558 9813 5.250235 TGTTTCGTTGCTTTTTATGGTCA 57.750 34.783 0.00 0.00 0.00 4.02
6559 9814 5.651530 TGTTTCGTTGCTTTTTATGGTCAA 58.348 33.333 0.00 0.00 0.00 3.18
6560 9815 6.100004 TGTTTCGTTGCTTTTTATGGTCAAA 58.900 32.000 0.00 0.00 0.00 2.69
6561 9816 6.758886 TGTTTCGTTGCTTTTTATGGTCAAAT 59.241 30.769 0.00 0.00 0.00 2.32
6562 9817 7.278868 TGTTTCGTTGCTTTTTATGGTCAAATT 59.721 29.630 0.00 0.00 0.00 1.82
6563 9818 8.756864 GTTTCGTTGCTTTTTATGGTCAAATTA 58.243 29.630 0.00 0.00 0.00 1.40
6564 9819 8.873215 TTCGTTGCTTTTTATGGTCAAATTAA 57.127 26.923 0.00 0.00 0.00 1.40
6565 9820 8.873215 TCGTTGCTTTTTATGGTCAAATTAAA 57.127 26.923 0.00 0.00 0.00 1.52
6566 9821 9.482627 TCGTTGCTTTTTATGGTCAAATTAAAT 57.517 25.926 0.00 0.00 0.00 1.40
6592 9847 9.952188 TTTTGATTTTTGGTTTTCTTCGTTTTT 57.048 22.222 0.00 0.00 0.00 1.94
6593 9848 9.600646 TTTGATTTTTGGTTTTCTTCGTTTTTC 57.399 25.926 0.00 0.00 0.00 2.29
6594 9849 8.541133 TGATTTTTGGTTTTCTTCGTTTTTCT 57.459 26.923 0.00 0.00 0.00 2.52
6595 9850 8.994170 TGATTTTTGGTTTTCTTCGTTTTTCTT 58.006 25.926 0.00 0.00 0.00 2.52
6596 9851 9.820229 GATTTTTGGTTTTCTTCGTTTTTCTTT 57.180 25.926 0.00 0.00 0.00 2.52
6598 9853 9.653067 TTTTTGGTTTTCTTCGTTTTTCTTTTC 57.347 25.926 0.00 0.00 0.00 2.29
6599 9854 7.948278 TTGGTTTTCTTCGTTTTTCTTTTCA 57.052 28.000 0.00 0.00 0.00 2.69
6600 9855 7.948278 TGGTTTTCTTCGTTTTTCTTTTCAA 57.052 28.000 0.00 0.00 0.00 2.69
6601 9856 8.366671 TGGTTTTCTTCGTTTTTCTTTTCAAA 57.633 26.923 0.00 0.00 0.00 2.69
6602 9857 8.827677 TGGTTTTCTTCGTTTTTCTTTTCAAAA 58.172 25.926 0.00 0.00 0.00 2.44
6603 9858 9.820229 GGTTTTCTTCGTTTTTCTTTTCAAAAT 57.180 25.926 0.00 0.00 0.00 1.82
6618 9873 9.466497 TCTTTTCAAAATATTACCTCTGCATCT 57.534 29.630 0.00 0.00 0.00 2.90
6622 9877 8.225603 TCAAAATATTACCTCTGCATCTTTCC 57.774 34.615 0.00 0.00 0.00 3.13
6623 9878 7.285401 TCAAAATATTACCTCTGCATCTTTCCC 59.715 37.037 0.00 0.00 0.00 3.97
6624 9879 5.912149 ATATTACCTCTGCATCTTTCCCA 57.088 39.130 0.00 0.00 0.00 4.37
6625 9880 3.634397 TTACCTCTGCATCTTTCCCAG 57.366 47.619 0.00 0.00 0.00 4.45
6626 9881 0.622665 ACCTCTGCATCTTTCCCAGG 59.377 55.000 0.00 0.00 0.00 4.45
6627 9882 0.106819 CCTCTGCATCTTTCCCAGGG 60.107 60.000 0.00 0.00 0.00 4.45
6628 9883 0.622665 CTCTGCATCTTTCCCAGGGT 59.377 55.000 5.01 0.00 0.00 4.34
6629 9884 1.005215 CTCTGCATCTTTCCCAGGGTT 59.995 52.381 5.01 0.00 0.00 4.11
6630 9885 1.428912 TCTGCATCTTTCCCAGGGTTT 59.571 47.619 5.01 0.00 0.00 3.27
6631 9886 2.158325 TCTGCATCTTTCCCAGGGTTTT 60.158 45.455 5.01 0.00 0.00 2.43
6632 9887 2.634453 CTGCATCTTTCCCAGGGTTTTT 59.366 45.455 5.01 0.00 0.00 1.94
6633 9888 2.632512 TGCATCTTTCCCAGGGTTTTTC 59.367 45.455 5.01 0.00 0.00 2.29
6634 9889 2.028112 GCATCTTTCCCAGGGTTTTTCC 60.028 50.000 5.01 0.00 0.00 3.13
6635 9890 3.510459 CATCTTTCCCAGGGTTTTTCCT 58.490 45.455 5.01 0.00 37.71 3.36
6636 9891 4.672899 CATCTTTCCCAGGGTTTTTCCTA 58.327 43.478 5.01 0.00 34.92 2.94
6637 9892 5.272402 CATCTTTCCCAGGGTTTTTCCTAT 58.728 41.667 5.01 0.00 34.92 2.57
6638 9893 4.930696 TCTTTCCCAGGGTTTTTCCTATC 58.069 43.478 5.01 0.00 34.92 2.08
6639 9894 3.750501 TTCCCAGGGTTTTTCCTATCC 57.249 47.619 5.01 0.00 34.92 2.59
6640 9895 2.650013 TCCCAGGGTTTTTCCTATCCA 58.350 47.619 5.01 0.00 34.92 3.41
6641 9896 3.206464 TCCCAGGGTTTTTCCTATCCAT 58.794 45.455 5.01 0.00 34.92 3.41
6642 9897 3.600617 TCCCAGGGTTTTTCCTATCCATT 59.399 43.478 5.01 0.00 34.92 3.16
6643 9898 4.046618 TCCCAGGGTTTTTCCTATCCATTT 59.953 41.667 5.01 0.00 34.92 2.32
6644 9899 4.782691 CCCAGGGTTTTTCCTATCCATTTT 59.217 41.667 0.00 0.00 34.92 1.82
6645 9900 5.104941 CCCAGGGTTTTTCCTATCCATTTTC 60.105 44.000 0.00 0.00 34.92 2.29
6646 9901 5.721480 CCAGGGTTTTTCCTATCCATTTTCT 59.279 40.000 0.00 0.00 34.92 2.52
6647 9902 6.895204 CCAGGGTTTTTCCTATCCATTTTCTA 59.105 38.462 0.00 0.00 34.92 2.10
6648 9903 7.565029 CCAGGGTTTTTCCTATCCATTTTCTAT 59.435 37.037 0.00 0.00 34.92 1.98
6649 9904 8.981659 CAGGGTTTTTCCTATCCATTTTCTATT 58.018 33.333 0.00 0.00 34.92 1.73
6650 9905 9.560860 AGGGTTTTTCCTATCCATTTTCTATTT 57.439 29.630 0.00 0.00 34.92 1.40
6663 9918 9.936759 TCCATTTTCTATTTTTCATTTGGGTAC 57.063 29.630 0.00 0.00 0.00 3.34
6664 9919 9.942850 CCATTTTCTATTTTTCATTTGGGTACT 57.057 29.630 0.00 0.00 0.00 2.73
6677 9932 9.974980 TTCATTTGGGTACTATTGTTTTTCTTC 57.025 29.630 0.00 0.00 0.00 2.87
6678 9933 8.293867 TCATTTGGGTACTATTGTTTTTCTTCG 58.706 33.333 0.00 0.00 0.00 3.79
6679 9934 6.563222 TTGGGTACTATTGTTTTTCTTCGG 57.437 37.500 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 117 2.301870 TCCATATATGCGTCCCTGGAAC 59.698 50.000 7.24 0.00 30.15 3.62
213 220 1.073763 CCCACATCACTGAAAGACCCA 59.926 52.381 0.00 0.00 37.43 4.51
214 221 1.073923 ACCCACATCACTGAAAGACCC 59.926 52.381 0.00 0.00 37.43 4.46
216 223 2.808543 GTCACCCACATCACTGAAAGAC 59.191 50.000 0.00 0.00 37.43 3.01
218 225 1.800586 CGTCACCCACATCACTGAAAG 59.199 52.381 0.00 0.00 42.29 2.62
219 226 1.414550 TCGTCACCCACATCACTGAAA 59.585 47.619 0.00 0.00 0.00 2.69
220 227 1.044611 TCGTCACCCACATCACTGAA 58.955 50.000 0.00 0.00 0.00 3.02
223 230 2.631160 TTTTCGTCACCCACATCACT 57.369 45.000 0.00 0.00 0.00 3.41
529 562 7.941795 AAAGAATCTTGCTTGTGAAATCAAG 57.058 32.000 0.00 2.58 45.09 3.02
573 606 1.533625 CGGCTGGTGATTTTTCCTCA 58.466 50.000 0.00 0.00 0.00 3.86
574 607 0.171231 GCGGCTGGTGATTTTTCCTC 59.829 55.000 0.00 0.00 0.00 3.71
629 662 1.338020 CAACTCTTTTTCCTGCCGCTT 59.662 47.619 0.00 0.00 0.00 4.68
716 749 3.311596 CGTTTTTCTCGTGTCCTTCCTTT 59.688 43.478 0.00 0.00 0.00 3.11
739 772 1.147376 CGTGGGTGGTTTCTGTGGA 59.853 57.895 0.00 0.00 0.00 4.02
745 778 3.670377 GGCTGCGTGGGTGGTTTC 61.670 66.667 0.00 0.00 0.00 2.78
1093 4120 2.780643 CGATGCGTGTTGCTCTGG 59.219 61.111 0.00 0.00 46.63 3.86
1142 4170 1.208165 AAGAGGCCCACCCAGGTAAG 61.208 60.000 0.00 0.00 36.11 2.34
1144 4172 1.923395 CAAGAGGCCCACCCAGGTA 60.923 63.158 0.00 0.00 36.11 3.08
1171 4199 1.125711 ACCGGCAGGAACTAACACCT 61.126 55.000 10.86 0.00 41.02 4.00
1172 4200 0.609662 TACCGGCAGGAACTAACACC 59.390 55.000 10.86 0.00 41.02 4.16
1173 4201 1.274447 ACTACCGGCAGGAACTAACAC 59.726 52.381 10.86 0.00 41.02 3.32
1174 4202 1.547372 GACTACCGGCAGGAACTAACA 59.453 52.381 10.86 0.00 41.02 2.41
1175 4203 1.134877 GGACTACCGGCAGGAACTAAC 60.135 57.143 10.86 0.00 41.02 2.34
1176 4204 1.188863 GGACTACCGGCAGGAACTAA 58.811 55.000 10.86 0.00 41.02 2.24
1180 4208 1.987855 CCTGGACTACCGGCAGGAA 60.988 63.158 17.53 0.00 40.99 3.36
1233 4397 1.644372 CGCGGTGTAAAGTTGCACA 59.356 52.632 13.21 0.84 44.20 4.57
1273 4437 1.402896 GGGATCTCGCACTCCATGGA 61.403 60.000 15.27 15.27 32.90 3.41
1340 4510 0.302890 GATCCGAATGTGCGCTTCTG 59.697 55.000 9.73 0.55 0.00 3.02
1354 4524 2.223433 GCAAATTCAGGCTTGAGATCCG 60.223 50.000 0.00 0.00 34.15 4.18
1445 4619 5.784177 ACAACACACACTATAGAGTTCAGG 58.216 41.667 6.78 0.00 31.73 3.86
1467 4641 5.091431 GTGCAAGAAATGAGCATACAGAAC 58.909 41.667 0.00 0.00 40.78 3.01
1517 4691 2.171341 AAACGAAGTCCTTGAGAGCC 57.829 50.000 0.00 0.00 45.00 4.70
1533 4707 2.552315 TGCACTACTTTGCTGCCTAAAC 59.448 45.455 0.00 0.00 43.41 2.01
1597 4771 1.126113 CGTGCTTACAGTTTACAGGCG 59.874 52.381 0.00 0.00 0.00 5.52
1606 4780 0.169672 ATCGCGTACGTGCTTACAGT 59.830 50.000 23.52 1.19 41.18 3.55
1760 4974 3.984770 TCCAGGGAGAAAAGGGTCTAAAA 59.015 43.478 0.00 0.00 0.00 1.52
1829 5044 5.822519 AGTTTTATATGCCGAATCAGCAGAA 59.177 36.000 0.00 0.00 44.90 3.02
1986 5201 2.159627 GCATAAAAGGACGTCACTGTGG 59.840 50.000 18.91 1.98 0.00 4.17
2015 5230 4.873259 TGTAAAGGCTTGCAAAAGAAAACC 59.127 37.500 0.00 0.00 0.00 3.27
2035 5250 9.747898 ACCATTTAAAACAGAGATACCAATGTA 57.252 29.630 0.00 0.00 0.00 2.29
2036 5251 8.650143 ACCATTTAAAACAGAGATACCAATGT 57.350 30.769 0.00 0.00 0.00 2.71
2081 5299 5.339177 GGCACAAATCCCTTTTTGTTTTTG 58.661 37.500 0.08 0.00 45.14 2.44
2083 5301 3.625313 CGGCACAAATCCCTTTTTGTTTT 59.375 39.130 0.08 0.00 45.14 2.43
2087 5305 2.035832 AGTCGGCACAAATCCCTTTTTG 59.964 45.455 0.00 0.00 41.37 2.44
2093 5311 0.240945 CACAAGTCGGCACAAATCCC 59.759 55.000 0.00 0.00 0.00 3.85
2162 5380 1.167851 TTCTGCAAAATCAGGGCTCG 58.832 50.000 0.00 0.00 34.91 5.03
2218 5457 2.420022 CGGGGAAAAATAGTGCTGACAG 59.580 50.000 0.00 0.00 0.00 3.51
2292 5531 4.867047 AGACGAGTCATTATCAGCAAAGTG 59.133 41.667 5.99 0.00 0.00 3.16
2627 5866 8.002459 ACTAAAAGGAAGTATGGACAGGAAAAA 58.998 33.333 0.00 0.00 0.00 1.94
2697 5937 6.270231 CCAAGTATAGCCCTACAAGAAGGTAT 59.730 42.308 0.00 0.00 34.56 2.73
2759 5999 4.875536 GCTTTTTGGAAAGAAGAAAAGGCA 59.124 37.500 0.00 0.00 44.03 4.75
2808 6049 0.846693 AGACAGTTCTGCCCCAACTT 59.153 50.000 0.00 0.00 31.40 2.66
2828 6069 9.236006 ACTAATCACAAGTTCTGCTAATCATTT 57.764 29.630 0.00 0.00 0.00 2.32
2855 6096 5.466728 TGTAGAAGATGTGCACTTTTCAGTC 59.533 40.000 19.41 12.64 0.00 3.51
2913 6154 4.389576 GAGCCAAACTGCGCCACG 62.390 66.667 4.18 0.00 36.02 4.94
2957 6198 7.458409 ACATTGTAAGAGTTGCATTTGAGAT 57.542 32.000 0.00 0.00 0.00 2.75
3002 6249 6.685828 CGAAGCAACACAAAGATTCATATCAG 59.314 38.462 0.00 0.00 32.95 2.90
3009 6256 4.209452 TCACGAAGCAACACAAAGATTC 57.791 40.909 0.00 0.00 0.00 2.52
3027 6274 9.383519 TCTTTTAGACTGAACCAATGATATCAC 57.616 33.333 7.78 0.00 0.00 3.06
3064 6311 5.494724 AGATAGCAGCTTCAAATGAACTCA 58.505 37.500 0.00 0.00 0.00 3.41
3071 6318 7.928307 TTAGTCAAAGATAGCAGCTTCAAAT 57.072 32.000 0.00 0.00 0.00 2.32
3249 6497 7.865706 ATACAATTGTTATGTCCTGAACTCC 57.134 36.000 17.78 0.00 32.27 3.85
3250 6498 9.601217 AGTATACAATTGTTATGTCCTGAACTC 57.399 33.333 17.78 0.00 32.27 3.01
3251 6499 9.959721 AAGTATACAATTGTTATGTCCTGAACT 57.040 29.630 17.78 4.52 32.27 3.01
3295 6543 5.875224 TCAGATACCTGGTGAATGTGAAAA 58.125 37.500 10.23 0.00 40.76 2.29
3429 6677 7.810658 TGTGCTAAGAGAATTGAGTTGAAATC 58.189 34.615 0.00 0.00 0.00 2.17
3448 6696 2.694213 TGCATAAGACGCTTTGTGCTA 58.306 42.857 17.59 6.21 43.16 3.49
3468 6716 7.835682 TCATGTTTTCTGGGTCATCTTTGATAT 59.164 33.333 0.00 0.00 33.56 1.63
3600 6848 1.203994 GAGGAGGATTTCGACCGTTGA 59.796 52.381 0.00 0.00 0.00 3.18
3637 6885 5.534278 TGCATTTATTGACTTGGAGTTCACA 59.466 36.000 0.00 0.00 0.00 3.58
3683 6931 2.823924 TTGTGCTGCATCAAATTGCT 57.176 40.000 5.27 0.00 43.18 3.91
3941 7192 5.582665 AGTTGTTGTTGTTGTTGTTGTTGTT 59.417 32.000 0.00 0.00 0.00 2.83
3942 7193 5.112686 AGTTGTTGTTGTTGTTGTTGTTGT 58.887 33.333 0.00 0.00 0.00 3.32
3943 7194 5.461737 AGAGTTGTTGTTGTTGTTGTTGTTG 59.538 36.000 0.00 0.00 0.00 3.33
3975 7226 3.356290 ACCTCATGCATTGGGTTACTTC 58.644 45.455 17.02 0.00 0.00 3.01
4063 7314 1.959226 CGTCCCCACAGTTGGTTCG 60.959 63.158 0.00 0.00 42.10 3.95
4069 7320 1.373812 GCTTACCGTCCCCACAGTT 59.626 57.895 0.00 0.00 0.00 3.16
4267 7518 4.768968 ACAGATTCTGAAAACAATCCCCTG 59.231 41.667 20.33 0.00 35.18 4.45
4273 7524 7.503566 TCTTCAAGGACAGATTCTGAAAACAAT 59.496 33.333 20.33 0.00 35.18 2.71
4426 7677 1.134699 TCCTTGCATGCCGAGTAAGAG 60.135 52.381 16.68 6.12 31.42 2.85
4928 8179 8.267620 TCCATATGGTTTATATGCTTTCATCG 57.732 34.615 21.28 0.00 44.80 3.84
5058 8309 5.696724 AGAGTTATCTTTCAAGACAACACCG 59.303 40.000 12.16 0.00 43.17 4.94
5211 8462 2.587522 GGGCTAAGGGAAAATAGCAGG 58.412 52.381 7.06 0.00 44.99 4.85
5323 8574 4.437682 TCAAGATTGTCAGTCCAAACCT 57.562 40.909 0.00 0.00 0.00 3.50
5442 8693 1.069227 GCCAGGAAAATGACGTGTCAC 60.069 52.381 4.57 0.00 43.11 3.67
5443 8694 1.202758 AGCCAGGAAAATGACGTGTCA 60.203 47.619 4.99 4.99 44.59 3.58
5444 8695 1.523758 AGCCAGGAAAATGACGTGTC 58.476 50.000 0.00 0.00 0.00 3.67
5445 8696 1.981256 AAGCCAGGAAAATGACGTGT 58.019 45.000 0.00 0.00 0.00 4.49
5446 8697 3.074412 ACTAAGCCAGGAAAATGACGTG 58.926 45.455 0.00 0.00 0.00 4.49
5447 8698 3.418684 ACTAAGCCAGGAAAATGACGT 57.581 42.857 0.00 0.00 0.00 4.34
5448 8699 4.935808 AGTAACTAAGCCAGGAAAATGACG 59.064 41.667 0.00 0.00 0.00 4.35
5449 8700 6.819397 AAGTAACTAAGCCAGGAAAATGAC 57.181 37.500 0.00 0.00 0.00 3.06
5693 8948 6.925934 TCCCCAATATGATCTTCTCCAAATT 58.074 36.000 0.00 0.00 0.00 1.82
5719 8974 3.007398 ACTCTGAATGTCTCCAGTTGGTC 59.993 47.826 0.00 0.00 36.34 4.02
5788 9043 3.123804 CACATCCGCTACATCTTACACC 58.876 50.000 0.00 0.00 0.00 4.16
5897 9152 6.168389 ACGTTCCTAAACTGGTTACATAAGG 58.832 40.000 0.00 0.00 32.95 2.69
6050 9305 8.950210 CACTTTGTGATACCTGACATAGAAAAT 58.050 33.333 0.00 0.00 35.23 1.82
6273 9528 0.378962 CTCTGAGTCGACGGCTTAGG 59.621 60.000 19.59 8.09 0.00 2.69
6297 9552 6.945938 TGTCGAAAACTTCCCTTTATGAAA 57.054 33.333 0.00 0.00 0.00 2.69
6307 9562 5.674933 ATCAGAACTTGTCGAAAACTTCC 57.325 39.130 4.62 0.00 0.00 3.46
6398 9653 6.475402 GTCTTTTTAAAACACACCATGTCCTG 59.525 38.462 0.00 0.00 42.31 3.86
6466 9721 6.478129 ACCGAAAAGATTATGGTTTCAGGTA 58.522 36.000 0.00 0.00 36.89 3.08
6471 9726 7.845066 AGTCTACCGAAAAGATTATGGTTTC 57.155 36.000 0.00 0.00 34.18 2.78
6475 9730 7.652507 GGTCTTAGTCTACCGAAAAGATTATGG 59.347 40.741 0.00 0.00 30.60 2.74
6487 9742 6.869913 TGTTGTTTATTGGTCTTAGTCTACCG 59.130 38.462 0.00 0.00 38.70 4.02
6493 9748 7.742767 ACCTACTGTTGTTTATTGGTCTTAGT 58.257 34.615 0.00 0.00 0.00 2.24
6503 9758 3.770933 TCGGCCTACCTACTGTTGTTTAT 59.229 43.478 0.00 0.00 0.00 1.40
6523 9778 2.014128 ACGAAACATTAATGGGCCTCG 58.986 47.619 19.37 19.75 0.00 4.63
6528 9783 6.538189 AAAAAGCAACGAAACATTAATGGG 57.462 33.333 19.37 8.17 0.00 4.00
6529 9784 8.167985 CCATAAAAAGCAACGAAACATTAATGG 58.832 33.333 19.37 4.33 0.00 3.16
6530 9785 8.707839 ACCATAAAAAGCAACGAAACATTAATG 58.292 29.630 14.01 14.01 0.00 1.90
6531 9786 8.825667 ACCATAAAAAGCAACGAAACATTAAT 57.174 26.923 0.00 0.00 0.00 1.40
6532 9787 7.921214 TGACCATAAAAAGCAACGAAACATTAA 59.079 29.630 0.00 0.00 0.00 1.40
6533 9788 7.426410 TGACCATAAAAAGCAACGAAACATTA 58.574 30.769 0.00 0.00 0.00 1.90
6534 9789 6.276847 TGACCATAAAAAGCAACGAAACATT 58.723 32.000 0.00 0.00 0.00 2.71
6535 9790 5.837437 TGACCATAAAAAGCAACGAAACAT 58.163 33.333 0.00 0.00 0.00 2.71
6536 9791 5.250235 TGACCATAAAAAGCAACGAAACA 57.750 34.783 0.00 0.00 0.00 2.83
6537 9792 6.576551 TTTGACCATAAAAAGCAACGAAAC 57.423 33.333 0.00 0.00 0.00 2.78
6538 9793 7.778470 AATTTGACCATAAAAAGCAACGAAA 57.222 28.000 0.00 0.00 0.00 3.46
6539 9794 8.873215 TTAATTTGACCATAAAAAGCAACGAA 57.127 26.923 0.00 0.00 0.00 3.85
6540 9795 8.873215 TTTAATTTGACCATAAAAAGCAACGA 57.127 26.923 0.00 0.00 0.00 3.85
6566 9821 9.952188 AAAAACGAAGAAAACCAAAAATCAAAA 57.048 22.222 0.00 0.00 0.00 2.44
6567 9822 9.600646 GAAAAACGAAGAAAACCAAAAATCAAA 57.399 25.926 0.00 0.00 0.00 2.69
6568 9823 8.994170 AGAAAAACGAAGAAAACCAAAAATCAA 58.006 25.926 0.00 0.00 0.00 2.57
6569 9824 8.541133 AGAAAAACGAAGAAAACCAAAAATCA 57.459 26.923 0.00 0.00 0.00 2.57
6570 9825 9.820229 AAAGAAAAACGAAGAAAACCAAAAATC 57.180 25.926 0.00 0.00 0.00 2.17
6572 9827 9.653067 GAAAAGAAAAACGAAGAAAACCAAAAA 57.347 25.926 0.00 0.00 0.00 1.94
6573 9828 8.827677 TGAAAAGAAAAACGAAGAAAACCAAAA 58.172 25.926 0.00 0.00 0.00 2.44
6574 9829 8.366671 TGAAAAGAAAAACGAAGAAAACCAAA 57.633 26.923 0.00 0.00 0.00 3.28
6575 9830 7.948278 TGAAAAGAAAAACGAAGAAAACCAA 57.052 28.000 0.00 0.00 0.00 3.67
6576 9831 7.948278 TTGAAAAGAAAAACGAAGAAAACCA 57.052 28.000 0.00 0.00 0.00 3.67
6577 9832 9.820229 ATTTTGAAAAGAAAAACGAAGAAAACC 57.180 25.926 0.00 0.00 29.78 3.27
6592 9847 9.466497 AGATGCAGAGGTAATATTTTGAAAAGA 57.534 29.630 0.00 0.00 0.00 2.52
6596 9851 8.686334 GGAAAGATGCAGAGGTAATATTTTGAA 58.314 33.333 0.00 0.00 0.00 2.69
6597 9852 7.285401 GGGAAAGATGCAGAGGTAATATTTTGA 59.715 37.037 0.00 0.00 0.00 2.69
6598 9853 7.068593 TGGGAAAGATGCAGAGGTAATATTTTG 59.931 37.037 0.00 0.00 0.00 2.44
6599 9854 7.125391 TGGGAAAGATGCAGAGGTAATATTTT 58.875 34.615 0.00 0.00 0.00 1.82
6600 9855 6.672593 TGGGAAAGATGCAGAGGTAATATTT 58.327 36.000 0.00 0.00 0.00 1.40
6601 9856 6.266131 TGGGAAAGATGCAGAGGTAATATT 57.734 37.500 0.00 0.00 0.00 1.28
6602 9857 5.222007 CCTGGGAAAGATGCAGAGGTAATAT 60.222 44.000 0.00 0.00 0.00 1.28
6603 9858 4.103153 CCTGGGAAAGATGCAGAGGTAATA 59.897 45.833 0.00 0.00 0.00 0.98
6604 9859 3.117738 CCTGGGAAAGATGCAGAGGTAAT 60.118 47.826 0.00 0.00 0.00 1.89
6605 9860 2.239654 CCTGGGAAAGATGCAGAGGTAA 59.760 50.000 0.00 0.00 0.00 2.85
6606 9861 1.839994 CCTGGGAAAGATGCAGAGGTA 59.160 52.381 0.00 0.00 0.00 3.08
6607 9862 0.622665 CCTGGGAAAGATGCAGAGGT 59.377 55.000 0.00 0.00 0.00 3.85
6608 9863 0.106819 CCCTGGGAAAGATGCAGAGG 60.107 60.000 7.01 0.00 0.00 3.69
6609 9864 0.622665 ACCCTGGGAAAGATGCAGAG 59.377 55.000 22.23 0.00 0.00 3.35
6610 9865 1.075601 AACCCTGGGAAAGATGCAGA 58.924 50.000 22.23 0.00 0.00 4.26
6611 9866 1.928868 AAACCCTGGGAAAGATGCAG 58.071 50.000 22.23 0.00 0.00 4.41
6612 9867 2.397044 AAAACCCTGGGAAAGATGCA 57.603 45.000 22.23 0.00 0.00 3.96
6613 9868 2.028112 GGAAAAACCCTGGGAAAGATGC 60.028 50.000 22.23 2.92 0.00 3.91
6614 9869 3.510459 AGGAAAAACCCTGGGAAAGATG 58.490 45.455 22.23 0.00 40.05 2.90
6615 9870 3.923273 AGGAAAAACCCTGGGAAAGAT 57.077 42.857 22.23 0.72 40.05 2.40
6616 9871 4.264217 GGATAGGAAAAACCCTGGGAAAGA 60.264 45.833 22.23 0.00 40.05 2.52
6617 9872 4.023980 GGATAGGAAAAACCCTGGGAAAG 58.976 47.826 22.23 0.00 40.05 2.62
6618 9873 3.403051 TGGATAGGAAAAACCCTGGGAAA 59.597 43.478 22.23 0.00 40.05 3.13
6619 9874 2.997463 TGGATAGGAAAAACCCTGGGAA 59.003 45.455 22.23 0.00 40.05 3.97
6620 9875 2.650013 TGGATAGGAAAAACCCTGGGA 58.350 47.619 22.23 0.00 40.05 4.37
6621 9876 3.688049 ATGGATAGGAAAAACCCTGGG 57.312 47.619 12.28 12.28 40.05 4.45
6622 9877 5.721480 AGAAAATGGATAGGAAAAACCCTGG 59.279 40.000 0.00 0.00 40.05 4.45
6623 9878 6.857437 AGAAAATGGATAGGAAAAACCCTG 57.143 37.500 0.00 0.00 40.05 4.45
6624 9879 9.560860 AAATAGAAAATGGATAGGAAAAACCCT 57.439 29.630 0.00 0.00 40.05 4.34
6637 9892 9.936759 GTACCCAAATGAAAAATAGAAAATGGA 57.063 29.630 0.00 0.00 0.00 3.41
6638 9893 9.942850 AGTACCCAAATGAAAAATAGAAAATGG 57.057 29.630 0.00 0.00 0.00 3.16
6651 9906 9.974980 GAAGAAAAACAATAGTACCCAAATGAA 57.025 29.630 0.00 0.00 0.00 2.57
6652 9907 8.293867 CGAAGAAAAACAATAGTACCCAAATGA 58.706 33.333 0.00 0.00 0.00 2.57
6653 9908 7.540745 CCGAAGAAAAACAATAGTACCCAAATG 59.459 37.037 0.00 0.00 0.00 2.32
6654 9909 7.599171 CCGAAGAAAAACAATAGTACCCAAAT 58.401 34.615 0.00 0.00 0.00 2.32
6655 9910 6.972722 CCGAAGAAAAACAATAGTACCCAAA 58.027 36.000 0.00 0.00 0.00 3.28
6656 9911 6.563222 CCGAAGAAAAACAATAGTACCCAA 57.437 37.500 0.00 0.00 0.00 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.