Multiple sequence alignment - TraesCS6D01G236300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G236300 chr6D 100.000 5172 0 0 1 5172 332946810 332951981 0.000000e+00 9551.0
1 TraesCS6D01G236300 chr6D 95.327 214 9 1 494 707 283156724 283156512 6.410000e-89 339.0
2 TraesCS6D01G236300 chr6D 84.615 78 11 1 806 883 12464832 12464756 5.550000e-10 76.8
3 TraesCS6D01G236300 chr6A 92.010 3079 131 44 863 3895 472513259 472516268 0.000000e+00 4217.0
4 TraesCS6D01G236300 chr6A 92.784 194 11 3 4247 4439 472516981 472517172 1.420000e-70 278.0
5 TraesCS6D01G236300 chr6A 86.667 240 16 9 4017 4243 472516451 472516687 8.600000e-63 252.0
6 TraesCS6D01G236300 chr6A 85.827 127 14 4 1979 2102 456607065 456607190 1.170000e-26 132.0
7 TraesCS6D01G236300 chr6A 92.857 84 4 2 1 83 472510806 472510888 2.530000e-23 121.0
8 TraesCS6D01G236300 chr6A 94.595 74 4 0 1987 2060 185764819 185764746 1.180000e-21 115.0
9 TraesCS6D01G236300 chr6A 85.714 56 8 0 1352 1407 472513777 472513832 5.590000e-05 60.2
10 TraesCS6D01G236300 chr6B 93.936 940 39 6 2957 3893 487209485 487208561 0.000000e+00 1404.0
11 TraesCS6D01G236300 chr6B 92.606 825 44 11 1521 2338 487212941 487212127 0.000000e+00 1170.0
12 TraesCS6D01G236300 chr6B 94.248 678 33 5 4499 5172 683490860 683490185 0.000000e+00 1031.0
13 TraesCS6D01G236300 chr6B 93.036 718 21 7 794 1507 487213621 487212929 0.000000e+00 1022.0
14 TraesCS6D01G236300 chr6B 93.750 480 22 6 2454 2929 487212013 487211538 0.000000e+00 713.0
15 TraesCS6D01G236300 chr6B 86.215 428 47 5 5 431 487214537 487214121 2.200000e-123 453.0
16 TraesCS6D01G236300 chr6B 95.604 182 7 1 4258 4439 487207838 487207658 1.820000e-74 291.0
17 TraesCS6D01G236300 chr6B 93.269 104 6 1 4020 4123 487208373 487208271 8.970000e-33 152.0
18 TraesCS6D01G236300 chr6B 94.286 35 1 1 2926 2959 487209600 487209566 9.000000e-03 52.8
19 TraesCS6D01G236300 chr7D 93.635 707 36 7 4474 5172 56285405 56286110 0.000000e+00 1048.0
20 TraesCS6D01G236300 chr7D 94.032 687 32 7 4493 5172 560574809 560575493 0.000000e+00 1033.0
21 TraesCS6D01G236300 chr7D 95.327 214 9 1 494 707 626649768 626649556 6.410000e-89 339.0
22 TraesCS6D01G236300 chr7D 88.298 94 11 0 4346 4439 501910659 501910566 4.230000e-21 113.0
23 TraesCS6D01G236300 chr7D 97.015 67 1 1 435 501 382077016 382076951 1.520000e-20 111.0
24 TraesCS6D01G236300 chr7D 97.015 67 1 1 435 501 382080166 382080101 1.520000e-20 111.0
25 TraesCS6D01G236300 chr7D 75.325 231 44 5 87 316 6000532 6000314 1.190000e-16 99.0
26 TraesCS6D01G236300 chr2D 93.931 692 36 6 4484 5172 539165327 539164639 0.000000e+00 1040.0
27 TraesCS6D01G236300 chr2D 94.595 74 4 0 1987 2060 198494137 198494210 1.180000e-21 115.0
28 TraesCS6D01G236300 chr3D 94.273 681 34 3 4496 5172 386733006 386733685 0.000000e+00 1037.0
29 TraesCS6D01G236300 chr3D 94.239 677 36 3 4499 5172 578648520 578647844 0.000000e+00 1031.0
30 TraesCS6D01G236300 chr3D 93.392 227 13 2 494 719 602890298 602890523 8.300000e-88 335.0
31 TraesCS6D01G236300 chr3D 86.207 116 15 1 3900 4015 601184398 601184512 1.960000e-24 124.0
32 TraesCS6D01G236300 chr3D 95.714 70 2 1 432 501 602869390 602869458 1.520000e-20 111.0
33 TraesCS6D01G236300 chr1D 94.100 678 36 3 4499 5172 489983177 489982500 0.000000e+00 1027.0
34 TraesCS6D01G236300 chr1D 91.011 89 8 0 4351 4439 270199766 270199678 2.530000e-23 121.0
35 TraesCS6D01G236300 chr1D 95.714 70 2 1 432 501 212455199 212455267 1.520000e-20 111.0
36 TraesCS6D01G236300 chr1D 83.019 106 17 1 3910 4015 390520294 390520398 1.530000e-15 95.3
37 TraesCS6D01G236300 chr4D 94.118 680 30 8 4499 5172 35123713 35124388 0.000000e+00 1026.0
38 TraesCS6D01G236300 chr4D 93.614 689 35 6 4491 5172 40799953 40799267 0.000000e+00 1020.0
39 TraesCS6D01G236300 chr4D 97.015 67 1 1 435 501 123391895 123391830 1.520000e-20 111.0
40 TraesCS6D01G236300 chr4D 97.015 67 1 1 435 501 134953383 134953318 1.520000e-20 111.0
41 TraesCS6D01G236300 chr3A 93.833 227 12 2 494 719 66030810 66031035 1.780000e-89 340.0
42 TraesCS6D01G236300 chr3A 85.470 117 13 4 1987 2102 589804332 589804445 9.100000e-23 119.0
43 TraesCS6D01G236300 chrUn 95.327 214 9 1 494 707 45100295 45100083 6.410000e-89 339.0
44 TraesCS6D01G236300 chrUn 95.327 214 9 1 494 707 462084099 462084311 6.410000e-89 339.0
45 TraesCS6D01G236300 chrUn 93.392 227 13 2 494 719 186163282 186163057 8.300000e-88 335.0
46 TraesCS6D01G236300 chrUn 88.372 86 9 1 4346 4431 369116102 369116018 9.160000e-18 102.0
47 TraesCS6D01G236300 chrUn 91.429 70 6 0 4370 4439 242571269 242571338 4.260000e-16 97.1
48 TraesCS6D01G236300 chr5D 95.327 214 9 1 494 707 305184122 305184334 6.410000e-89 339.0
49 TraesCS6D01G236300 chr5D 79.661 177 33 3 707 881 57234202 57234027 1.960000e-24 124.0
50 TraesCS6D01G236300 chr5D 85.950 121 12 5 1979 2095 272364558 272364677 1.960000e-24 124.0
51 TraesCS6D01G236300 chr1B 95.327 214 9 1 494 707 583498060 583497848 6.410000e-89 339.0
52 TraesCS6D01G236300 chr1A 91.379 116 10 0 3900 4015 61356823 61356708 5.360000e-35 159.0
53 TraesCS6D01G236300 chr1A 95.714 70 2 1 432 501 94673563 94673631 1.520000e-20 111.0
54 TraesCS6D01G236300 chr5A 85.714 126 14 4 1979 2101 362177485 362177609 4.200000e-26 130.0
55 TraesCS6D01G236300 chr3B 87.273 110 14 0 3909 4018 712557566 712557457 5.440000e-25 126.0
56 TraesCS6D01G236300 chr3B 90.476 63 2 1 4286 4344 25384018 25384080 4.290000e-11 80.5
57 TraesCS6D01G236300 chr3B 82.716 81 5 5 4259 4336 126924543 126924469 4.320000e-06 63.9
58 TraesCS6D01G236300 chr7B 94.737 76 3 1 435 510 745249676 745249602 3.270000e-22 117.0
59 TraesCS6D01G236300 chr5B 86.408 103 14 0 3912 4014 511700500 511700602 4.230000e-21 113.0
60 TraesCS6D01G236300 chr5B 94.595 37 1 1 2067 2102 574756258 574756222 7.230000e-04 56.5
61 TraesCS6D01G236300 chr4B 97.015 67 1 1 435 501 623337730 623337665 1.520000e-20 111.0
62 TraesCS6D01G236300 chr4B 90.476 84 7 1 1978 2060 22850686 22850769 5.480000e-20 110.0
63 TraesCS6D01G236300 chr2A 90.244 82 7 1 4346 4427 778615571 778615651 7.080000e-19 106.0
64 TraesCS6D01G236300 chr2B 88.372 86 9 1 4346 4431 777953698 777953614 9.160000e-18 102.0
65 TraesCS6D01G236300 chr2B 88.372 86 9 1 4346 4431 778009149 778009065 9.160000e-18 102.0
66 TraesCS6D01G236300 chr2B 100.000 28 0 0 2077 2104 530590908 530590935 9.000000e-03 52.8
67 TraesCS6D01G236300 chr7A 88.235 85 9 1 2021 2104 555658266 555658182 3.300000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G236300 chr6D 332946810 332951981 5171 False 9551.000 9551 100.00000 1 5172 1 chr6D.!!$F1 5171
1 TraesCS6D01G236300 chr6A 472510806 472517172 6366 False 985.640 4217 90.00640 1 4439 5 chr6A.!!$F2 4438
2 TraesCS6D01G236300 chr6B 683490185 683490860 675 True 1031.000 1031 94.24800 4499 5172 1 chr6B.!!$R1 673
3 TraesCS6D01G236300 chr6B 487207658 487214537 6879 True 657.225 1404 92.83775 5 4439 8 chr6B.!!$R2 4434
4 TraesCS6D01G236300 chr7D 56285405 56286110 705 False 1048.000 1048 93.63500 4474 5172 1 chr7D.!!$F1 698
5 TraesCS6D01G236300 chr7D 560574809 560575493 684 False 1033.000 1033 94.03200 4493 5172 1 chr7D.!!$F2 679
6 TraesCS6D01G236300 chr2D 539164639 539165327 688 True 1040.000 1040 93.93100 4484 5172 1 chr2D.!!$R1 688
7 TraesCS6D01G236300 chr3D 386733006 386733685 679 False 1037.000 1037 94.27300 4496 5172 1 chr3D.!!$F1 676
8 TraesCS6D01G236300 chr3D 578647844 578648520 676 True 1031.000 1031 94.23900 4499 5172 1 chr3D.!!$R1 673
9 TraesCS6D01G236300 chr1D 489982500 489983177 677 True 1027.000 1027 94.10000 4499 5172 1 chr1D.!!$R2 673
10 TraesCS6D01G236300 chr4D 35123713 35124388 675 False 1026.000 1026 94.11800 4499 5172 1 chr4D.!!$F1 673
11 TraesCS6D01G236300 chr4D 40799267 40799953 686 True 1020.000 1020 93.61400 4491 5172 1 chr4D.!!$R1 681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
980 2746 0.112412 GAAACACCCACCCTGGTCAT 59.888 55.0 0.00 0.0 36.12 3.06 F
2148 3945 0.320374 CTGCGGTCACCTAACTTGGA 59.680 55.0 0.00 0.0 0.00 3.53 F
3905 7768 0.251354 AGGCTACAGCAGACACATGG 59.749 55.0 3.24 0.0 44.36 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2611 4410 0.035152 CACTTCTATGCCAGTGCCCA 60.035 55.000 0.0 0.0 34.33 5.36 R
3951 7814 0.033504 GTGTCCGAGTTGCTCTTCCA 59.966 55.000 0.0 0.0 0.00 3.53 R
4912 9193 1.403780 GCCTAGTGTTAGTGGGTGACG 60.404 57.143 0.0 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 2.036733 CGAAGTGAGTGTAGGGTTTCCA 59.963 50.000 0.00 0.00 34.83 3.53
83 84 1.158904 TTGGGGTTTATGTGGGGACA 58.841 50.000 0.00 0.00 38.70 4.02
84 85 1.388174 TGGGGTTTATGTGGGGACAT 58.612 50.000 0.00 0.00 46.14 3.06
85 86 2.574587 TGGGGTTTATGTGGGGACATA 58.425 47.619 0.00 0.00 46.14 2.29
86 87 2.512056 TGGGGTTTATGTGGGGACATAG 59.488 50.000 0.00 0.00 46.14 2.23
122 1690 2.662596 GGTCTGACATGGCGGACA 59.337 61.111 35.71 3.52 44.21 4.02
181 1749 3.298619 CATTTGGGTTGGATATGAGGCA 58.701 45.455 0.00 0.00 0.00 4.75
196 1764 2.509336 GCACGTCGGACATCCCAG 60.509 66.667 9.10 0.00 34.14 4.45
197 1765 3.001902 GCACGTCGGACATCCCAGA 62.002 63.158 9.10 0.00 34.14 3.86
212 1780 0.250234 CCAGACATTTGAGAGGCCGA 59.750 55.000 0.00 0.00 0.00 5.54
226 1794 2.749839 CCGATTTGAGGCGCCCAA 60.750 61.111 26.15 23.45 0.00 4.12
238 1806 1.731093 CGCCCAAGTTGGTCGTTTT 59.269 52.632 16.98 0.00 35.17 2.43
269 1837 1.194781 AATGACTGGTCTGCCCGTCT 61.195 55.000 9.06 0.00 45.59 4.18
272 1840 2.997315 CTGGTCTGCCCGTCTGGA 60.997 66.667 0.00 0.00 37.49 3.86
293 1861 1.196127 CGTTTGAGACCGGTTTAAGGC 59.804 52.381 9.42 0.00 0.00 4.35
295 1863 0.393820 TTGAGACCGGTTTAAGGCGT 59.606 50.000 9.42 0.00 0.00 5.68
326 1894 4.950050 AGATGCTCTTATAAACTGGACCG 58.050 43.478 0.00 0.00 0.00 4.79
436 2007 5.438761 AAAATGCGGGATAGATTAAGTGC 57.561 39.130 0.00 0.00 0.00 4.40
437 2008 2.543777 TGCGGGATAGATTAAGTGCC 57.456 50.000 0.00 0.00 0.00 5.01
438 2009 1.071699 TGCGGGATAGATTAAGTGCCC 59.928 52.381 0.00 0.00 0.00 5.36
439 2010 1.071699 GCGGGATAGATTAAGTGCCCA 59.928 52.381 0.00 0.00 35.26 5.36
440 2011 2.290323 GCGGGATAGATTAAGTGCCCAT 60.290 50.000 0.00 0.00 35.26 4.00
441 2012 3.600388 CGGGATAGATTAAGTGCCCATC 58.400 50.000 0.00 0.00 35.26 3.51
442 2013 3.007940 CGGGATAGATTAAGTGCCCATCA 59.992 47.826 0.00 0.00 35.26 3.07
444 2015 5.385198 GGGATAGATTAAGTGCCCATCAAA 58.615 41.667 0.00 0.00 35.63 2.69
445 2016 5.833131 GGGATAGATTAAGTGCCCATCAAAA 59.167 40.000 0.00 0.00 35.63 2.44
446 2017 6.015940 GGGATAGATTAAGTGCCCATCAAAAG 60.016 42.308 0.00 0.00 35.63 2.27
447 2018 6.772716 GGATAGATTAAGTGCCCATCAAAAGA 59.227 38.462 0.00 0.00 0.00 2.52
448 2019 7.040823 GGATAGATTAAGTGCCCATCAAAAGAG 60.041 40.741 0.00 0.00 0.00 2.85
449 2020 5.819991 AGATTAAGTGCCCATCAAAAGAGA 58.180 37.500 0.00 0.00 0.00 3.10
452 2023 1.425066 AGTGCCCATCAAAAGAGACCA 59.575 47.619 0.00 0.00 0.00 4.02
453 2024 2.042162 AGTGCCCATCAAAAGAGACCAT 59.958 45.455 0.00 0.00 0.00 3.55
455 2026 3.259123 GTGCCCATCAAAAGAGACCATTT 59.741 43.478 0.00 0.00 0.00 2.32
456 2027 3.511146 TGCCCATCAAAAGAGACCATTTC 59.489 43.478 0.00 0.00 0.00 2.17
457 2028 3.766051 GCCCATCAAAAGAGACCATTTCT 59.234 43.478 0.00 0.00 37.23 2.52
472 2043 8.384607 AGACCATTTCTCTTAAAACTTCTGTC 57.615 34.615 0.00 0.00 0.00 3.51
474 2045 6.490381 ACCATTTCTCTTAAAACTTCTGTCCC 59.510 38.462 0.00 0.00 0.00 4.46
476 2047 7.094592 CCATTTCTCTTAAAACTTCTGTCCCTC 60.095 40.741 0.00 0.00 0.00 4.30
477 2048 5.485209 TCTCTTAAAACTTCTGTCCCTCC 57.515 43.478 0.00 0.00 0.00 4.30
478 2049 4.905456 TCTCTTAAAACTTCTGTCCCTCCA 59.095 41.667 0.00 0.00 0.00 3.86
479 2050 5.368523 TCTCTTAAAACTTCTGTCCCTCCAA 59.631 40.000 0.00 0.00 0.00 3.53
481 2052 2.278332 AAACTTCTGTCCCTCCAAGC 57.722 50.000 0.00 0.00 0.00 4.01
482 2053 1.140312 AACTTCTGTCCCTCCAAGCA 58.860 50.000 0.00 0.00 0.00 3.91
486 2057 1.067295 TCTGTCCCTCCAAGCATTGT 58.933 50.000 0.00 0.00 46.99 2.71
487 2058 2.265367 TCTGTCCCTCCAAGCATTGTA 58.735 47.619 0.00 0.00 46.99 2.41
488 2059 2.027192 TCTGTCCCTCCAAGCATTGTAC 60.027 50.000 0.00 0.00 46.99 2.90
491 2062 2.945668 GTCCCTCCAAGCATTGTACATC 59.054 50.000 0.00 0.00 46.99 3.06
492 2063 2.092429 TCCCTCCAAGCATTGTACATCC 60.092 50.000 0.00 0.00 46.99 3.51
494 2065 3.624777 CCTCCAAGCATTGTACATCCTT 58.375 45.455 0.00 0.00 46.99 3.36
496 2067 3.620488 TCCAAGCATTGTACATCCTTCC 58.380 45.455 0.00 0.00 46.99 3.46
497 2068 3.010027 TCCAAGCATTGTACATCCTTCCA 59.990 43.478 0.00 0.00 46.99 3.53
498 2069 3.379372 CCAAGCATTGTACATCCTTCCAG 59.621 47.826 0.00 0.00 46.99 3.86
500 2071 4.148128 AGCATTGTACATCCTTCCAGAG 57.852 45.455 0.00 0.00 0.00 3.35
501 2072 6.659317 CAAGCATTGTACATCCTTCCAGAGG 61.659 48.000 0.00 0.00 43.71 3.69
502 2073 3.813443 CATTGTACATCCTTCCAGAGGG 58.187 50.000 0.00 0.00 46.31 4.30
513 2084 1.965414 TCCAGAGGGAAATGCACCTA 58.035 50.000 0.00 0.00 41.32 3.08
514 2085 2.274542 TCCAGAGGGAAATGCACCTAA 58.725 47.619 0.00 0.00 41.32 2.69
515 2086 2.239654 TCCAGAGGGAAATGCACCTAAG 59.760 50.000 0.00 0.00 41.32 2.18
516 2087 2.239654 CCAGAGGGAAATGCACCTAAGA 59.760 50.000 0.00 0.00 37.18 2.10
518 2089 4.133078 CAGAGGGAAATGCACCTAAGATC 58.867 47.826 0.00 0.00 37.18 2.75
519 2090 3.782523 AGAGGGAAATGCACCTAAGATCA 59.217 43.478 0.00 0.00 37.18 2.92
520 2091 4.228210 AGAGGGAAATGCACCTAAGATCAA 59.772 41.667 0.00 0.00 37.18 2.57
522 2093 5.522641 AGGGAAATGCACCTAAGATCAAAT 58.477 37.500 0.00 0.00 34.71 2.32
523 2094 6.672593 AGGGAAATGCACCTAAGATCAAATA 58.327 36.000 0.00 0.00 34.71 1.40
526 2097 8.424133 GGGAAATGCACCTAAGATCAAATATTT 58.576 33.333 0.00 0.00 0.00 1.40
531 2102 7.483307 TGCACCTAAGATCAAATATTTTGAGC 58.517 34.615 9.56 9.56 35.27 4.26
532 2103 6.920210 GCACCTAAGATCAAATATTTTGAGCC 59.080 38.462 12.98 6.03 35.61 4.70
533 2104 7.134815 CACCTAAGATCAAATATTTTGAGCCG 58.865 38.462 12.98 4.49 35.61 5.52
534 2105 7.012327 CACCTAAGATCAAATATTTTGAGCCGA 59.988 37.037 12.98 3.12 35.61 5.54
535 2106 7.012421 ACCTAAGATCAAATATTTTGAGCCGAC 59.988 37.037 12.98 2.06 35.61 4.79
537 2108 7.396540 AAGATCAAATATTTTGAGCCGACTT 57.603 32.000 12.98 8.16 35.61 3.01
538 2109 7.020914 AGATCAAATATTTTGAGCCGACTTC 57.979 36.000 12.98 3.06 35.61 3.01
539 2110 5.560966 TCAAATATTTTGAGCCGACTTCC 57.439 39.130 0.00 0.00 0.00 3.46
540 2111 5.007034 TCAAATATTTTGAGCCGACTTCCA 58.993 37.500 0.00 0.00 0.00 3.53
542 2113 5.505173 AATATTTTGAGCCGACTTCCATG 57.495 39.130 0.00 0.00 0.00 3.66
543 2114 1.533625 TTTTGAGCCGACTTCCATGG 58.466 50.000 4.97 4.97 0.00 3.66
545 2116 0.690192 TTGAGCCGACTTCCATGGAA 59.310 50.000 25.53 25.53 0.00 3.53
547 2118 1.073125 TGAGCCGACTTCCATGGAAAA 59.927 47.619 26.87 7.32 33.34 2.29
552 2123 3.428045 GCCGACTTCCATGGAAAATTCAG 60.428 47.826 26.87 16.79 33.34 3.02
554 2125 4.142600 CCGACTTCCATGGAAAATTCAGAC 60.143 45.833 26.87 13.68 33.34 3.51
555 2126 4.697352 CGACTTCCATGGAAAATTCAGACT 59.303 41.667 26.87 0.38 33.34 3.24
556 2127 5.182001 CGACTTCCATGGAAAATTCAGACTT 59.818 40.000 26.87 0.00 33.34 3.01
558 2129 7.454260 ACTTCCATGGAAAATTCAGACTTAC 57.546 36.000 26.87 0.00 33.34 2.34
559 2130 7.234355 ACTTCCATGGAAAATTCAGACTTACT 58.766 34.615 26.87 0.00 33.34 2.24
560 2131 7.725844 ACTTCCATGGAAAATTCAGACTTACTT 59.274 33.333 26.87 0.00 33.34 2.24
561 2132 8.477419 TTCCATGGAAAATTCAGACTTACTTT 57.523 30.769 25.13 0.00 0.00 2.66
562 2133 8.477419 TCCATGGAAAATTCAGACTTACTTTT 57.523 30.769 13.46 0.00 0.00 2.27
563 2134 8.923270 TCCATGGAAAATTCAGACTTACTTTTT 58.077 29.630 13.46 0.00 0.00 1.94
571 2142 8.950403 AATTCAGACTTACTTTTTAATGTCGC 57.050 30.769 0.00 0.00 0.00 5.19
572 2143 6.148270 TCAGACTTACTTTTTAATGTCGCG 57.852 37.500 0.00 0.00 0.00 5.87
573 2144 5.921976 TCAGACTTACTTTTTAATGTCGCGA 59.078 36.000 3.71 3.71 0.00 5.87
574 2145 6.588756 TCAGACTTACTTTTTAATGTCGCGAT 59.411 34.615 14.06 0.00 0.00 4.58
579 2150 3.430895 ACTTTTTAATGTCGCGATCACGT 59.569 39.130 14.06 0.00 41.98 4.49
580 2151 4.622313 ACTTTTTAATGTCGCGATCACGTA 59.378 37.500 14.06 6.03 41.98 3.57
584 2155 3.363788 AATGTCGCGATCACGTAAAAC 57.636 42.857 14.06 0.00 41.98 2.43
585 2156 1.062258 TGTCGCGATCACGTAAAACC 58.938 50.000 14.06 0.00 41.98 3.27
586 2157 1.062258 GTCGCGATCACGTAAAACCA 58.938 50.000 14.06 0.00 41.98 3.67
587 2158 1.657094 GTCGCGATCACGTAAAACCAT 59.343 47.619 14.06 0.00 41.98 3.55
589 2160 3.304026 GTCGCGATCACGTAAAACCATAA 59.696 43.478 14.06 0.00 41.98 1.90
590 2161 3.925299 TCGCGATCACGTAAAACCATAAA 59.075 39.130 3.71 0.00 41.98 1.40
591 2162 4.017271 CGCGATCACGTAAAACCATAAAC 58.983 43.478 0.00 0.00 41.98 2.01
592 2163 4.201647 CGCGATCACGTAAAACCATAAACT 60.202 41.667 0.00 0.00 41.98 2.66
593 2164 5.624292 GCGATCACGTAAAACCATAAACTT 58.376 37.500 0.00 0.00 41.98 2.66
596 2167 7.292292 CGATCACGTAAAACCATAAACTTTGA 58.708 34.615 0.00 0.00 34.56 2.69
597 2168 7.799447 CGATCACGTAAAACCATAAACTTTGAA 59.201 33.333 0.00 0.00 34.56 2.69
598 2169 9.113876 GATCACGTAAAACCATAAACTTTGAAG 57.886 33.333 0.00 0.00 0.00 3.02
599 2170 6.913673 TCACGTAAAACCATAAACTTTGAAGC 59.086 34.615 0.00 0.00 0.00 3.86
601 2172 7.112984 CACGTAAAACCATAAACTTTGAAGCTC 59.887 37.037 0.00 0.00 0.00 4.09
602 2173 7.136119 CGTAAAACCATAAACTTTGAAGCTCA 58.864 34.615 0.00 0.00 0.00 4.26
603 2174 7.646130 CGTAAAACCATAAACTTTGAAGCTCAA 59.354 33.333 0.00 0.00 34.03 3.02
606 2177 9.696917 AAAACCATAAACTTTGAAGCTCAATAG 57.303 29.630 0.00 0.00 36.11 1.73
620 2191 5.947228 GCTCAATAGCTAAATACATGGCA 57.053 39.130 0.00 0.00 45.85 4.92
621 2192 6.317789 GCTCAATAGCTAAATACATGGCAA 57.682 37.500 0.00 0.00 45.85 4.52
631 2202 9.701098 AGCTAAATACATGGCAATTAAATCATG 57.299 29.630 0.00 0.00 41.74 3.07
632 2203 9.695526 GCTAAATACATGGCAATTAAATCATGA 57.304 29.630 0.00 0.00 39.27 3.07
637 2208 2.361757 TGGCAATTAAATCATGAGCCGG 59.638 45.455 13.38 0.00 43.35 6.13
639 2210 2.622942 GCAATTAAATCATGAGCCGGGA 59.377 45.455 2.18 0.00 0.00 5.14
640 2211 3.256631 GCAATTAAATCATGAGCCGGGAT 59.743 43.478 2.18 0.00 0.00 3.85
641 2212 4.616835 GCAATTAAATCATGAGCCGGGATC 60.617 45.833 5.08 5.08 0.00 3.36
642 2213 3.855255 TTAAATCATGAGCCGGGATCA 57.145 42.857 18.45 18.45 30.86 2.92
645 2216 4.371624 AAATCATGAGCCGGGATCATTA 57.628 40.909 24.34 17.63 36.49 1.90
647 2218 3.407424 TCATGAGCCGGGATCATTAAG 57.593 47.619 24.34 13.97 36.49 1.85
648 2219 2.972021 TCATGAGCCGGGATCATTAAGA 59.028 45.455 24.34 15.99 36.49 2.10
650 2221 3.475566 TGAGCCGGGATCATTAAGAAG 57.524 47.619 11.64 0.00 0.00 2.85
651 2222 2.147150 GAGCCGGGATCATTAAGAAGC 58.853 52.381 7.56 0.00 0.00 3.86
652 2223 1.490490 AGCCGGGATCATTAAGAAGCA 59.510 47.619 2.18 0.00 0.00 3.91
653 2224 2.107204 AGCCGGGATCATTAAGAAGCAT 59.893 45.455 2.18 0.00 0.00 3.79
654 2225 3.327757 AGCCGGGATCATTAAGAAGCATA 59.672 43.478 2.18 0.00 0.00 3.14
655 2226 3.437049 GCCGGGATCATTAAGAAGCATAC 59.563 47.826 2.18 0.00 0.00 2.39
656 2227 4.804261 GCCGGGATCATTAAGAAGCATACT 60.804 45.833 2.18 0.00 0.00 2.12
657 2228 4.692625 CCGGGATCATTAAGAAGCATACTG 59.307 45.833 0.00 0.00 0.00 2.74
658 2229 4.153117 CGGGATCATTAAGAAGCATACTGC 59.847 45.833 0.00 0.00 45.46 4.40
680 2251 7.859325 TGCAAGTAGGAAGTGGAATTAATAC 57.141 36.000 0.00 0.00 0.00 1.89
681 2252 7.398829 TGCAAGTAGGAAGTGGAATTAATACA 58.601 34.615 0.00 0.00 0.00 2.29
682 2253 7.885922 TGCAAGTAGGAAGTGGAATTAATACAA 59.114 33.333 0.00 0.00 0.00 2.41
683 2254 8.903820 GCAAGTAGGAAGTGGAATTAATACAAT 58.096 33.333 0.00 0.00 0.00 2.71
702 2273 8.922058 ATACAATGAATTCAGAAGCATCAAAC 57.078 30.769 14.54 0.00 0.00 2.93
703 2274 6.161381 ACAATGAATTCAGAAGCATCAAACC 58.839 36.000 14.54 0.00 0.00 3.27
704 2275 6.014840 ACAATGAATTCAGAAGCATCAAACCT 60.015 34.615 14.54 0.00 0.00 3.50
705 2276 5.633830 TGAATTCAGAAGCATCAAACCTC 57.366 39.130 3.38 0.00 0.00 3.85
752 2323 6.744537 CCACTCAAAATCGTGAATCAAATCTC 59.255 38.462 0.00 0.00 33.04 2.75
787 2358 5.816682 TCATCTATATGAGAGGGCTCGTTA 58.183 41.667 0.00 0.00 44.33 3.18
848 2580 8.463930 TCTAAAGTTGAACACCTCAATTGAAT 57.536 30.769 9.88 0.00 45.74 2.57
919 2684 3.778265 ACAAAATATGTGGGCCTCAACT 58.222 40.909 12.93 0.00 41.93 3.16
979 2745 1.534697 GAAACACCCACCCTGGTCA 59.465 57.895 0.00 0.00 36.12 4.02
980 2746 0.112412 GAAACACCCACCCTGGTCAT 59.888 55.000 0.00 0.00 36.12 3.06
981 2747 1.353022 GAAACACCCACCCTGGTCATA 59.647 52.381 0.00 0.00 36.12 2.15
982 2748 0.991920 AACACCCACCCTGGTCATAG 59.008 55.000 0.00 0.00 36.12 2.23
1028 2795 0.610174 TCGCAGAGCCTTGTCTCAAT 59.390 50.000 0.00 0.00 35.59 2.57
1029 2796 1.005340 CGCAGAGCCTTGTCTCAATC 58.995 55.000 0.00 0.00 35.59 2.67
1033 2803 3.119919 GCAGAGCCTTGTCTCAATCAAAG 60.120 47.826 0.00 0.00 35.59 2.77
1037 2807 4.577875 AGCCTTGTCTCAATCAAAGAGAG 58.422 43.478 0.00 0.00 42.38 3.20
1243 3013 0.611896 CCCTCAAACCCAATTCCGCT 60.612 55.000 0.00 0.00 0.00 5.52
1255 3026 1.677637 ATTCCGCTTCCTCGTCCCTC 61.678 60.000 0.00 0.00 0.00 4.30
1261 3032 3.914579 TTCCTCGTCCCTCGCGTCT 62.915 63.158 5.77 0.00 39.67 4.18
1507 3279 4.536765 TCTTCACCCTTCTCTTTTGCTTT 58.463 39.130 0.00 0.00 0.00 3.51
1508 3280 4.956075 TCTTCACCCTTCTCTTTTGCTTTT 59.044 37.500 0.00 0.00 0.00 2.27
1509 3281 5.422012 TCTTCACCCTTCTCTTTTGCTTTTT 59.578 36.000 0.00 0.00 0.00 1.94
1613 3385 3.643159 ATTGTTGTTCTTTCTTCCGGC 57.357 42.857 0.00 0.00 0.00 6.13
1632 3406 5.875910 TCCGGCGTTTATATTCAGAAAAAGA 59.124 36.000 6.01 0.00 0.00 2.52
1637 3411 9.620660 GGCGTTTATATTCAGAAAAAGAAAGAA 57.379 29.630 0.00 0.00 0.00 2.52
1644 3418 9.706529 ATATTCAGAAAAAGAAAGAAGGGCTAT 57.293 29.630 0.00 0.00 0.00 2.97
1675 3449 2.461695 TCCTTTTTGTTGCAACCCTGA 58.538 42.857 26.14 11.34 0.00 3.86
1678 3452 4.080638 TCCTTTTTGTTGCAACCCTGAAAT 60.081 37.500 26.14 0.00 0.00 2.17
1709 3483 4.022329 TGTCAATAGAGTTGCTCGTTCTGA 60.022 41.667 0.00 0.00 35.36 3.27
1784 3572 9.733556 ATATTGAAATATATTACCCGAAGTGCA 57.266 29.630 0.00 0.00 30.07 4.57
1785 3573 7.490962 TTGAAATATATTACCCGAAGTGCAG 57.509 36.000 0.00 0.00 0.00 4.41
1786 3574 6.588204 TGAAATATATTACCCGAAGTGCAGT 58.412 36.000 0.00 0.00 0.00 4.40
1787 3575 6.481976 TGAAATATATTACCCGAAGTGCAGTG 59.518 38.462 0.00 0.00 0.00 3.66
1788 3576 3.906720 ATATTACCCGAAGTGCAGTGT 57.093 42.857 0.00 0.00 0.00 3.55
1789 3577 6.659745 ATATATTACCCGAAGTGCAGTGTA 57.340 37.500 0.00 0.00 0.00 2.90
1790 3578 2.736144 TTACCCGAAGTGCAGTGTAG 57.264 50.000 0.00 0.00 0.00 2.74
1883 3671 5.763876 AGTTCACACCCTAGCTTATTTCT 57.236 39.130 0.00 0.00 0.00 2.52
1907 3695 1.826385 ATGACACTTGCTTACCAGCC 58.174 50.000 0.00 0.00 46.74 4.85
1954 3750 1.000896 GTGGTGCCATGCCTAAGGT 60.001 57.895 0.00 0.00 0.00 3.50
1994 3790 7.940178 ATTAGGAACAAAGTTTAAAAAGCGG 57.060 32.000 0.00 0.00 0.00 5.52
2064 3860 1.656652 CGCATGCTTAAGTGCTAGGT 58.343 50.000 17.13 0.00 39.16 3.08
2075 3872 3.146104 AGTGCTAGGTGTTTTGCATCT 57.854 42.857 0.00 0.00 42.18 2.90
2148 3945 0.320374 CTGCGGTCACCTAACTTGGA 59.680 55.000 0.00 0.00 0.00 3.53
2150 3947 1.349688 TGCGGTCACCTAACTTGGATT 59.650 47.619 0.00 0.00 0.00 3.01
2299 4096 1.117150 TTAGTACCTGATGACGGGCC 58.883 55.000 0.00 0.00 45.88 5.80
2339 4136 1.118838 CAGCCTCCCTAGAGTCTTGG 58.881 60.000 13.18 13.18 38.58 3.61
2611 4410 1.985473 TTGTGCTCACATTTCAGCCT 58.015 45.000 3.31 0.00 41.52 4.58
2763 4564 5.270979 AGGTAAATAAAGGAAGCCAGGTT 57.729 39.130 0.00 0.00 0.00 3.50
2766 4567 2.907458 ATAAAGGAAGCCAGGTTGCT 57.093 45.000 0.00 0.00 45.43 3.91
2929 4731 9.160496 CTCTTTGAAACTTCAGTTATATCAGCT 57.840 33.333 0.00 0.00 38.61 4.24
3310 7137 6.183360 CGGAATTCATATTTTGCCAAACACTG 60.183 38.462 7.93 0.00 0.00 3.66
3311 7138 6.402442 GGAATTCATATTTTGCCAAACACTGC 60.402 38.462 7.93 0.00 0.00 4.40
3391 7218 4.523943 AGAAACATACTTTTGGCAGATGCA 59.476 37.500 7.19 0.00 44.36 3.96
3482 7309 9.241919 TGGAGCTTCTTTGATCAAATTATGTTA 57.758 29.630 20.76 3.05 0.00 2.41
3634 7489 4.019174 CAGGCTTTTTGGTATGGAGATGT 58.981 43.478 0.00 0.00 0.00 3.06
3650 7508 4.142491 GGAGATGTTTTTGTGTGTGTGTGA 60.142 41.667 0.00 0.00 0.00 3.58
3654 7512 1.160989 TTTTGTGTGTGTGTGAGCGT 58.839 45.000 0.00 0.00 0.00 5.07
3675 7533 1.202076 GCGCTAGAGGTGTTGATTTGC 60.202 52.381 0.00 0.00 0.00 3.68
3752 7610 3.870538 TGCATAGCTTCCATTCTCCAT 57.129 42.857 0.00 0.00 0.00 3.41
3770 7633 6.778821 TCTCCATCCTTGAAACTTGTATGAA 58.221 36.000 0.00 0.00 0.00 2.57
3817 7680 4.883354 GGCAAGGGGATCAGCGGG 62.883 72.222 0.00 0.00 0.00 6.13
3824 7687 4.424711 GGATCAGCGGGCCCACAA 62.425 66.667 24.92 4.76 0.00 3.33
3856 7719 3.000727 GTCCCCTGTTGACAAATACTCG 58.999 50.000 0.00 0.00 32.91 4.18
3861 7724 3.325870 CTGTTGACAAATACTCGCTCCA 58.674 45.455 0.00 0.00 0.00 3.86
3889 7752 8.736751 TCAAAATATAAGACGTTTTTCAAGGC 57.263 30.769 0.00 0.00 0.00 4.35
3890 7753 8.573035 TCAAAATATAAGACGTTTTTCAAGGCT 58.427 29.630 0.00 0.00 0.00 4.58
3891 7754 9.834628 CAAAATATAAGACGTTTTTCAAGGCTA 57.165 29.630 0.00 0.00 0.00 3.93
3892 7755 9.836076 AAAATATAAGACGTTTTTCAAGGCTAC 57.164 29.630 0.00 0.00 0.00 3.58
3893 7756 8.556213 AATATAAGACGTTTTTCAAGGCTACA 57.444 30.769 0.00 0.00 0.00 2.74
3894 7757 4.813296 AAGACGTTTTTCAAGGCTACAG 57.187 40.909 0.00 0.00 0.00 2.74
3895 7758 2.548480 AGACGTTTTTCAAGGCTACAGC 59.452 45.455 0.00 0.00 41.14 4.40
3897 7760 2.290641 ACGTTTTTCAAGGCTACAGCAG 59.709 45.455 3.24 0.00 44.36 4.24
3901 7764 2.169832 TTCAAGGCTACAGCAGACAC 57.830 50.000 3.24 0.00 44.36 3.67
3902 7765 1.047801 TCAAGGCTACAGCAGACACA 58.952 50.000 3.24 0.00 44.36 3.72
3904 7767 1.736126 CAAGGCTACAGCAGACACATG 59.264 52.381 3.24 0.00 44.36 3.21
3905 7768 0.251354 AGGCTACAGCAGACACATGG 59.749 55.000 3.24 0.00 44.36 3.66
3906 7769 0.745845 GGCTACAGCAGACACATGGG 60.746 60.000 3.24 0.00 44.36 4.00
3907 7770 1.372087 GCTACAGCAGACACATGGGC 61.372 60.000 0.00 0.00 41.59 5.36
3908 7771 0.745845 CTACAGCAGACACATGGGCC 60.746 60.000 0.00 0.00 0.00 5.80
3909 7772 2.196997 TACAGCAGACACATGGGCCC 62.197 60.000 17.59 17.59 0.00 5.80
3910 7773 4.415150 AGCAGACACATGGGCCCG 62.415 66.667 19.37 6.14 0.00 6.13
3912 7775 4.415150 CAGACACATGGGCCCGCT 62.415 66.667 19.37 3.52 0.00 5.52
3913 7776 4.101448 AGACACATGGGCCCGCTC 62.101 66.667 19.37 6.58 0.00 5.03
3924 7787 4.767255 CCCGCTCCACCACAGCTC 62.767 72.222 0.00 0.00 34.45 4.09
3926 7789 2.433838 CGCTCCACCACAGCTCTG 60.434 66.667 0.00 0.00 34.45 3.35
3927 7790 2.935740 CGCTCCACCACAGCTCTGA 61.936 63.158 3.60 0.00 34.45 3.27
3928 7791 1.375268 GCTCCACCACAGCTCTGAC 60.375 63.158 3.60 0.00 33.75 3.51
3930 7793 0.683973 CTCCACCACAGCTCTGACTT 59.316 55.000 3.60 0.00 0.00 3.01
3931 7794 0.681733 TCCACCACAGCTCTGACTTC 59.318 55.000 3.60 0.00 0.00 3.01
3932 7795 0.394192 CCACCACAGCTCTGACTTCA 59.606 55.000 3.60 0.00 0.00 3.02
3933 7796 1.202687 CCACCACAGCTCTGACTTCAA 60.203 52.381 3.60 0.00 0.00 2.69
3935 7798 2.547211 CACCACAGCTCTGACTTCAAAG 59.453 50.000 3.60 0.00 0.00 2.77
3936 7799 1.534595 CCACAGCTCTGACTTCAAAGC 59.465 52.381 3.60 0.00 34.95 3.51
3937 7800 2.216046 CACAGCTCTGACTTCAAAGCA 58.784 47.619 7.29 0.00 37.22 3.91
3938 7801 2.615447 CACAGCTCTGACTTCAAAGCAA 59.385 45.455 7.29 0.00 37.22 3.91
3939 7802 2.615912 ACAGCTCTGACTTCAAAGCAAC 59.384 45.455 7.29 0.00 37.22 4.17
3940 7803 2.031333 CAGCTCTGACTTCAAAGCAACC 60.031 50.000 7.29 0.00 37.22 3.77
3941 7804 1.949525 GCTCTGACTTCAAAGCAACCA 59.050 47.619 0.00 0.00 34.86 3.67
3942 7805 2.358898 GCTCTGACTTCAAAGCAACCAA 59.641 45.455 0.00 0.00 34.86 3.67
3943 7806 3.549625 GCTCTGACTTCAAAGCAACCAAG 60.550 47.826 0.00 0.00 34.86 3.61
3945 7808 2.098614 TGACTTCAAAGCAACCAAGCA 58.901 42.857 0.00 0.00 36.85 3.91
3948 7811 2.204237 CTTCAAAGCAACCAAGCAACC 58.796 47.619 0.00 0.00 36.85 3.77
3949 7812 0.463620 TCAAAGCAACCAAGCAACCC 59.536 50.000 0.00 0.00 36.85 4.11
3950 7813 0.177604 CAAAGCAACCAAGCAACCCA 59.822 50.000 0.00 0.00 36.85 4.51
3951 7814 1.130777 AAAGCAACCAAGCAACCCAT 58.869 45.000 0.00 0.00 36.85 4.00
3952 7815 0.393820 AAGCAACCAAGCAACCCATG 59.606 50.000 0.00 0.00 36.85 3.66
3953 7816 1.004679 GCAACCAAGCAACCCATGG 60.005 57.895 4.14 4.14 40.16 3.66
3954 7817 1.470996 GCAACCAAGCAACCCATGGA 61.471 55.000 15.22 0.00 37.66 3.41
3956 7819 1.001181 CAACCAAGCAACCCATGGAAG 59.999 52.381 15.22 3.27 37.66 3.46
3958 7821 1.180029 CCAAGCAACCCATGGAAGAG 58.820 55.000 15.22 0.00 36.27 2.85
3959 7822 0.529378 CAAGCAACCCATGGAAGAGC 59.471 55.000 15.22 11.66 0.00 4.09
3960 7823 0.112995 AAGCAACCCATGGAAGAGCA 59.887 50.000 15.22 0.00 0.00 4.26
3961 7824 0.112995 AGCAACCCATGGAAGAGCAA 59.887 50.000 15.22 0.00 0.00 3.91
3963 7826 1.915141 CAACCCATGGAAGAGCAACT 58.085 50.000 15.22 0.00 0.00 3.16
3964 7827 1.815003 CAACCCATGGAAGAGCAACTC 59.185 52.381 15.22 0.00 0.00 3.01
3965 7828 0.036010 ACCCATGGAAGAGCAACTCG 60.036 55.000 15.22 0.00 35.36 4.18
3966 7829 0.745845 CCCATGGAAGAGCAACTCGG 60.746 60.000 15.22 0.00 35.36 4.63
3967 7830 0.250234 CCATGGAAGAGCAACTCGGA 59.750 55.000 5.56 0.00 35.36 4.55
3968 7831 1.363744 CATGGAAGAGCAACTCGGAC 58.636 55.000 0.00 0.00 35.36 4.79
3969 7832 0.976641 ATGGAAGAGCAACTCGGACA 59.023 50.000 0.00 0.00 35.36 4.02
3970 7833 0.033504 TGGAAGAGCAACTCGGACAC 59.966 55.000 0.00 0.00 35.36 3.67
3971 7834 1.009389 GGAAGAGCAACTCGGACACG 61.009 60.000 0.00 0.00 42.74 4.49
3974 7837 2.356313 AGCAACTCGGACACGCTG 60.356 61.111 0.00 0.00 40.69 5.18
3976 7839 2.943345 GCAACTCGGACACGCTGTG 61.943 63.158 7.07 7.07 40.69 3.66
3977 7840 1.299850 CAACTCGGACACGCTGTGA 60.300 57.895 14.18 0.00 40.69 3.58
3979 7842 0.597637 AACTCGGACACGCTGTGAAG 60.598 55.000 14.18 8.67 40.69 3.02
3980 7843 1.285950 CTCGGACACGCTGTGAAGA 59.714 57.895 14.18 9.29 40.69 2.87
3983 7846 1.557443 CGGACACGCTGTGAAGAACC 61.557 60.000 14.18 8.59 36.96 3.62
3984 7847 1.557443 GGACACGCTGTGAAGAACCG 61.557 60.000 14.18 0.00 36.96 4.44
3986 7849 0.874607 ACACGCTGTGAAGAACCGAC 60.875 55.000 14.18 0.00 36.96 4.79
3987 7850 0.597637 CACGCTGTGAAGAACCGACT 60.598 55.000 3.04 0.00 35.23 4.18
3988 7851 0.956633 ACGCTGTGAAGAACCGACTA 59.043 50.000 0.00 0.00 0.00 2.59
3989 7852 1.544691 ACGCTGTGAAGAACCGACTAT 59.455 47.619 0.00 0.00 0.00 2.12
3990 7853 2.029290 ACGCTGTGAAGAACCGACTATT 60.029 45.455 0.00 0.00 0.00 1.73
3991 7854 2.345641 CGCTGTGAAGAACCGACTATTG 59.654 50.000 0.00 0.00 0.00 1.90
3992 7855 3.585862 GCTGTGAAGAACCGACTATTGA 58.414 45.455 0.00 0.00 0.00 2.57
3993 7856 3.994392 GCTGTGAAGAACCGACTATTGAA 59.006 43.478 0.00 0.00 0.00 2.69
3994 7857 4.092091 GCTGTGAAGAACCGACTATTGAAG 59.908 45.833 0.00 0.00 0.00 3.02
3995 7858 5.209818 TGTGAAGAACCGACTATTGAAGT 57.790 39.130 0.00 0.00 42.80 3.01
4005 7868 1.752501 CTATTGAAGTCCACGCCGCG 61.753 60.000 12.14 12.14 0.00 6.46
4006 7869 2.215465 TATTGAAGTCCACGCCGCGA 62.215 55.000 21.79 0.00 0.00 5.87
4028 7953 2.158900 CCCGAGCTTCTGTGGATGTATT 60.159 50.000 0.00 0.00 0.00 1.89
4131 8059 7.529158 TGATGTTTTTGTGTACAGCTCATATG 58.471 34.615 0.00 0.00 32.21 1.78
4187 8124 9.405587 GTACGTTGGTAAGTACTTGTGTATTTA 57.594 33.333 18.56 0.00 39.86 1.40
4239 8176 7.066307 AGTCAGTTTTTGAATTTATGGGCTT 57.934 32.000 0.00 0.00 37.61 4.35
4243 8180 8.811017 TCAGTTTTTGAATTTATGGGCTTCATA 58.189 29.630 0.00 0.00 33.41 2.15
4244 8181 9.603921 CAGTTTTTGAATTTATGGGCTTCATAT 57.396 29.630 2.19 0.00 38.08 1.78
4246 8183 9.382275 GTTTTTGAATTTATGGGCTTCATATGT 57.618 29.630 1.90 0.00 38.08 2.29
4251 8188 9.461312 TGAATTTATGGGCTTCATATGTATACC 57.539 33.333 1.90 2.84 38.08 2.73
4255 8524 8.673456 TTATGGGCTTCATATGTATACCTGTA 57.327 34.615 1.90 0.00 38.08 2.74
4257 8526 7.568128 TGGGCTTCATATGTATACCTGTATT 57.432 36.000 1.90 0.00 0.00 1.89
4410 8681 2.223572 GGCTCAAATTATGAAGCCCACG 60.224 50.000 0.70 0.00 42.10 4.94
4439 8710 5.989777 AGCTAGTTTTGCTTCTTCGTTAGAA 59.010 36.000 0.00 3.44 40.57 2.10
4440 8711 6.482308 AGCTAGTTTTGCTTCTTCGTTAGAAA 59.518 34.615 0.00 0.00 42.19 2.52
4441 8712 6.574093 GCTAGTTTTGCTTCTTCGTTAGAAAC 59.426 38.462 0.00 0.00 42.19 2.78
4442 8713 5.817988 AGTTTTGCTTCTTCGTTAGAAACC 58.182 37.500 4.73 1.13 42.19 3.27
4443 8714 5.589050 AGTTTTGCTTCTTCGTTAGAAACCT 59.411 36.000 4.73 0.00 42.19 3.50
4444 8715 6.764560 AGTTTTGCTTCTTCGTTAGAAACCTA 59.235 34.615 4.73 0.00 42.19 3.08
4445 8716 6.780706 TTTGCTTCTTCGTTAGAAACCTAG 57.219 37.500 4.73 0.00 42.19 3.02
4446 8717 5.464030 TGCTTCTTCGTTAGAAACCTAGT 57.536 39.130 4.73 0.00 42.19 2.57
4447 8718 5.227908 TGCTTCTTCGTTAGAAACCTAGTG 58.772 41.667 4.73 0.00 42.19 2.74
4448 8719 4.626172 GCTTCTTCGTTAGAAACCTAGTGG 59.374 45.833 4.73 0.00 42.19 4.00
4449 8720 5.566230 GCTTCTTCGTTAGAAACCTAGTGGA 60.566 44.000 4.73 0.00 42.19 4.02
4450 8721 6.600882 TTCTTCGTTAGAAACCTAGTGGAT 57.399 37.500 1.21 0.00 39.90 3.41
4451 8722 6.600882 TCTTCGTTAGAAACCTAGTGGATT 57.399 37.500 0.00 0.00 35.71 3.01
4452 8723 6.395629 TCTTCGTTAGAAACCTAGTGGATTG 58.604 40.000 0.00 0.00 35.71 2.67
4453 8724 5.733620 TCGTTAGAAACCTAGTGGATTGT 57.266 39.130 0.00 0.00 37.04 2.71
4454 8725 5.475719 TCGTTAGAAACCTAGTGGATTGTG 58.524 41.667 0.00 0.00 37.04 3.33
4455 8726 4.092968 CGTTAGAAACCTAGTGGATTGTGC 59.907 45.833 0.00 0.00 37.04 4.57
4456 8727 5.246307 GTTAGAAACCTAGTGGATTGTGCT 58.754 41.667 0.00 0.00 37.04 4.40
4457 8728 6.403878 GTTAGAAACCTAGTGGATTGTGCTA 58.596 40.000 0.00 0.00 37.04 3.49
4458 8729 5.499004 AGAAACCTAGTGGATTGTGCTAA 57.501 39.130 0.00 0.00 37.04 3.09
4459 8730 5.876357 AGAAACCTAGTGGATTGTGCTAAA 58.124 37.500 0.00 0.00 37.04 1.85
4460 8731 6.303839 AGAAACCTAGTGGATTGTGCTAAAA 58.696 36.000 0.00 0.00 37.04 1.52
4461 8732 6.775629 AGAAACCTAGTGGATTGTGCTAAAAA 59.224 34.615 0.00 0.00 37.04 1.94
4462 8733 6.575162 AACCTAGTGGATTGTGCTAAAAAG 57.425 37.500 0.00 0.00 37.04 2.27
4463 8734 5.876357 ACCTAGTGGATTGTGCTAAAAAGA 58.124 37.500 0.00 0.00 37.04 2.52
4464 8735 5.940470 ACCTAGTGGATTGTGCTAAAAAGAG 59.060 40.000 0.00 0.00 37.04 2.85
4465 8736 4.773323 AGTGGATTGTGCTAAAAAGAGC 57.227 40.909 0.00 0.00 43.16 4.09
4466 8737 7.518697 CCTAGTGGATTGTGCTAAAAAGAGCA 61.519 42.308 0.00 0.00 42.37 4.26
4467 8738 8.916757 CCTAGTGGATTGTGCTAAAAAGAGCAA 61.917 40.741 0.00 0.00 44.54 3.91
4479 8750 8.454293 GCTAAAAAGAGCAAATAGGAAAAGAC 57.546 34.615 0.00 0.00 42.36 3.01
4480 8751 7.542477 GCTAAAAAGAGCAAATAGGAAAAGACC 59.458 37.037 0.00 0.00 42.36 3.85
4481 8752 6.976934 AAAAGAGCAAATAGGAAAAGACCA 57.023 33.333 0.00 0.00 0.00 4.02
4482 8753 6.976934 AAAGAGCAAATAGGAAAAGACCAA 57.023 33.333 0.00 0.00 0.00 3.67
4483 8754 5.966742 AGAGCAAATAGGAAAAGACCAAC 57.033 39.130 0.00 0.00 0.00 3.77
4484 8755 5.635120 AGAGCAAATAGGAAAAGACCAACT 58.365 37.500 0.00 0.00 0.00 3.16
4485 8756 6.779860 AGAGCAAATAGGAAAAGACCAACTA 58.220 36.000 0.00 0.00 0.00 2.24
4486 8757 6.881602 AGAGCAAATAGGAAAAGACCAACTAG 59.118 38.462 0.00 0.00 0.00 2.57
4487 8758 5.946377 AGCAAATAGGAAAAGACCAACTAGG 59.054 40.000 0.00 0.00 45.67 3.02
4488 8759 5.944007 GCAAATAGGAAAAGACCAACTAGGA 59.056 40.000 0.00 0.00 41.22 2.94
4489 8760 6.603599 GCAAATAGGAAAAGACCAACTAGGAT 59.396 38.462 0.00 0.00 41.22 3.24
4490 8761 7.122799 GCAAATAGGAAAAGACCAACTAGGATT 59.877 37.037 0.00 0.00 41.22 3.01
4491 8762 9.025041 CAAATAGGAAAAGACCAACTAGGATTT 57.975 33.333 0.00 0.00 41.22 2.17
4680 8958 0.750850 ATAGATAACGCCCACACGCT 59.249 50.000 0.00 0.00 36.19 5.07
4912 9193 6.808704 GCCATGATTTCAAAACTTTAGGAGTC 59.191 38.462 0.00 0.00 37.72 3.36
4914 9195 7.308589 CCATGATTTCAAAACTTTAGGAGTCGT 60.309 37.037 0.00 0.00 37.72 4.34
4963 9246 7.630513 GCCATGTAACACTATAAAAAGGCATGT 60.631 37.037 0.00 0.00 37.23 3.21
4997 9281 4.342951 TGTTCGGGTAAAAGAGAGAGTTGA 59.657 41.667 0.00 0.00 0.00 3.18
5118 9404 3.823873 ACACATGGCAACTCGGATAAAAA 59.176 39.130 0.00 0.00 37.61 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.719378 TCTCTTCTCCACCCCTTCTCT 59.281 52.381 0.00 0.00 0.00 3.10
61 62 2.024369 GTCCCCACATAAACCCCAATCT 60.024 50.000 0.00 0.00 0.00 2.40
139 1707 2.529744 GGGAAGATATGGGGCGGCT 61.530 63.158 9.56 0.00 0.00 5.52
181 1749 0.970937 ATGTCTGGGATGTCCGACGT 60.971 55.000 0.00 0.00 39.89 4.34
196 1764 3.009723 TCAAATCGGCCTCTCAAATGTC 58.990 45.455 0.00 0.00 0.00 3.06
197 1765 3.012518 CTCAAATCGGCCTCTCAAATGT 58.987 45.455 0.00 0.00 0.00 2.71
212 1780 1.535204 CCAACTTGGGCGCCTCAAAT 61.535 55.000 28.56 15.89 32.67 2.32
269 1837 0.178533 AAACCGGTCTCAAACGTCCA 59.821 50.000 8.04 0.00 0.00 4.02
272 1840 2.486918 CCTTAAACCGGTCTCAAACGT 58.513 47.619 8.04 0.00 0.00 3.99
326 1894 2.814336 AGAATCGTTCTCTTGTTTGGCC 59.186 45.455 0.00 0.00 34.07 5.36
431 2002 2.158475 TGGTCTCTTTTGATGGGCACTT 60.158 45.455 0.00 0.00 0.00 3.16
433 2004 1.909700 TGGTCTCTTTTGATGGGCAC 58.090 50.000 0.00 0.00 0.00 5.01
434 2005 2.905415 ATGGTCTCTTTTGATGGGCA 57.095 45.000 0.00 0.00 0.00 5.36
435 2006 3.766051 AGAAATGGTCTCTTTTGATGGGC 59.234 43.478 0.00 0.00 0.00 5.36
447 2018 7.445707 GGACAGAAGTTTTAAGAGAAATGGTCT 59.554 37.037 0.00 0.00 40.25 3.85
448 2019 7.308649 GGGACAGAAGTTTTAAGAGAAATGGTC 60.309 40.741 0.00 0.00 0.00 4.02
449 2020 6.490381 GGGACAGAAGTTTTAAGAGAAATGGT 59.510 38.462 0.00 0.00 0.00 3.55
452 2023 6.943146 GGAGGGACAGAAGTTTTAAGAGAAAT 59.057 38.462 0.00 0.00 0.00 2.17
453 2024 6.126594 TGGAGGGACAGAAGTTTTAAGAGAAA 60.127 38.462 0.00 0.00 0.00 2.52
455 2026 4.905456 TGGAGGGACAGAAGTTTTAAGAGA 59.095 41.667 0.00 0.00 0.00 3.10
456 2027 5.228945 TGGAGGGACAGAAGTTTTAAGAG 57.771 43.478 0.00 0.00 0.00 2.85
457 2028 5.621193 CTTGGAGGGACAGAAGTTTTAAGA 58.379 41.667 0.00 0.00 0.00 2.10
458 2029 4.216472 GCTTGGAGGGACAGAAGTTTTAAG 59.784 45.833 0.00 0.00 0.00 1.85
460 2031 3.137544 TGCTTGGAGGGACAGAAGTTTTA 59.862 43.478 0.00 0.00 0.00 1.52
462 2033 1.494721 TGCTTGGAGGGACAGAAGTTT 59.505 47.619 0.00 0.00 0.00 2.66
463 2034 1.140312 TGCTTGGAGGGACAGAAGTT 58.860 50.000 0.00 0.00 0.00 2.66
464 2035 1.366319 ATGCTTGGAGGGACAGAAGT 58.634 50.000 0.00 0.00 0.00 3.01
465 2036 2.089980 CAATGCTTGGAGGGACAGAAG 58.910 52.381 0.00 0.00 0.00 2.85
467 2038 1.067295 ACAATGCTTGGAGGGACAGA 58.933 50.000 1.84 0.00 34.12 3.41
468 2039 2.290260 TGTACAATGCTTGGAGGGACAG 60.290 50.000 0.00 0.00 34.12 3.51
469 2040 1.702401 TGTACAATGCTTGGAGGGACA 59.298 47.619 0.00 0.00 34.12 4.02
470 2041 2.489938 TGTACAATGCTTGGAGGGAC 57.510 50.000 0.00 0.00 34.12 4.46
472 2043 2.092212 AGGATGTACAATGCTTGGAGGG 60.092 50.000 0.00 0.00 34.12 4.30
474 2045 3.629398 GGAAGGATGTACAATGCTTGGAG 59.371 47.826 13.76 0.00 34.12 3.86
476 2047 3.355378 TGGAAGGATGTACAATGCTTGG 58.645 45.455 13.76 0.00 34.12 3.61
477 2048 4.264253 TCTGGAAGGATGTACAATGCTTG 58.736 43.478 13.76 4.13 29.74 4.01
478 2049 4.521146 CTCTGGAAGGATGTACAATGCTT 58.479 43.478 0.00 5.74 32.30 3.91
479 2050 4.148128 CTCTGGAAGGATGTACAATGCT 57.852 45.455 0.00 0.00 0.00 3.79
494 2065 1.965414 TAGGTGCATTTCCCTCTGGA 58.035 50.000 0.00 0.00 39.54 3.86
496 2067 3.634397 TCTTAGGTGCATTTCCCTCTG 57.366 47.619 0.00 0.00 32.08 3.35
497 2068 3.782523 TGATCTTAGGTGCATTTCCCTCT 59.217 43.478 0.00 0.00 32.08 3.69
498 2069 4.156455 TGATCTTAGGTGCATTTCCCTC 57.844 45.455 0.00 0.00 32.08 4.30
500 2071 5.859205 ATTTGATCTTAGGTGCATTTCCC 57.141 39.130 0.00 0.00 0.00 3.97
501 2072 9.822185 AAAATATTTGATCTTAGGTGCATTTCC 57.178 29.630 0.39 0.00 0.00 3.13
506 2077 7.416664 GGCTCAAAATATTTGATCTTAGGTGCA 60.417 37.037 0.39 0.00 0.00 4.57
508 2079 7.012327 TCGGCTCAAAATATTTGATCTTAGGTG 59.988 37.037 0.39 0.00 0.00 4.00
509 2080 7.012421 GTCGGCTCAAAATATTTGATCTTAGGT 59.988 37.037 0.39 0.00 0.00 3.08
510 2081 7.227512 AGTCGGCTCAAAATATTTGATCTTAGG 59.772 37.037 0.39 0.00 0.00 2.69
511 2082 8.147642 AGTCGGCTCAAAATATTTGATCTTAG 57.852 34.615 0.39 0.00 0.00 2.18
513 2084 7.396540 AAGTCGGCTCAAAATATTTGATCTT 57.603 32.000 0.39 4.63 0.00 2.40
514 2085 6.038714 GGAAGTCGGCTCAAAATATTTGATCT 59.961 38.462 0.39 0.00 0.00 2.75
515 2086 6.183360 TGGAAGTCGGCTCAAAATATTTGATC 60.183 38.462 0.39 2.60 0.00 2.92
516 2087 5.652014 TGGAAGTCGGCTCAAAATATTTGAT 59.348 36.000 0.39 0.00 0.00 2.57
518 2089 5.309323 TGGAAGTCGGCTCAAAATATTTG 57.691 39.130 0.39 0.00 0.00 2.32
519 2090 5.163519 CCATGGAAGTCGGCTCAAAATATTT 60.164 40.000 5.56 0.00 0.00 1.40
520 2091 4.339247 CCATGGAAGTCGGCTCAAAATATT 59.661 41.667 5.56 0.00 0.00 1.28
522 2093 3.054728 TCCATGGAAGTCGGCTCAAAATA 60.055 43.478 13.46 0.00 0.00 1.40
523 2094 2.094675 CCATGGAAGTCGGCTCAAAAT 58.905 47.619 5.56 0.00 0.00 1.82
526 2097 0.690192 TTCCATGGAAGTCGGCTCAA 59.310 50.000 23.63 0.00 0.00 3.02
529 2100 2.514458 ATTTTCCATGGAAGTCGGCT 57.486 45.000 25.69 6.94 35.38 5.52
530 2101 2.491693 TGAATTTTCCATGGAAGTCGGC 59.508 45.455 25.69 15.87 35.38 5.54
531 2102 4.009675 TCTGAATTTTCCATGGAAGTCGG 58.990 43.478 25.69 24.99 35.38 4.79
532 2103 4.697352 AGTCTGAATTTTCCATGGAAGTCG 59.303 41.667 25.69 18.21 35.38 4.18
533 2104 6.581171 AAGTCTGAATTTTCCATGGAAGTC 57.419 37.500 25.69 22.45 35.38 3.01
534 2105 7.234355 AGTAAGTCTGAATTTTCCATGGAAGT 58.766 34.615 25.69 16.45 35.38 3.01
535 2106 7.693969 AGTAAGTCTGAATTTTCCATGGAAG 57.306 36.000 25.69 14.23 35.38 3.46
537 2108 8.477419 AAAAGTAAGTCTGAATTTTCCATGGA 57.523 30.769 11.44 11.44 0.00 3.41
545 2116 9.394477 GCGACATTAAAAAGTAAGTCTGAATTT 57.606 29.630 0.00 0.00 0.00 1.82
547 2118 7.117236 TCGCGACATTAAAAAGTAAGTCTGAAT 59.883 33.333 3.71 0.00 0.00 2.57
552 2123 6.677411 GTGATCGCGACATTAAAAAGTAAGTC 59.323 38.462 12.93 0.00 0.00 3.01
554 2125 5.666878 CGTGATCGCGACATTAAAAAGTAAG 59.333 40.000 23.89 0.00 0.00 2.34
555 2126 5.118971 ACGTGATCGCGACATTAAAAAGTAA 59.881 36.000 33.43 0.00 41.18 2.24
556 2127 4.622313 ACGTGATCGCGACATTAAAAAGTA 59.378 37.500 33.43 0.00 41.18 2.24
558 2129 3.986128 ACGTGATCGCGACATTAAAAAG 58.014 40.909 33.43 1.81 41.18 2.27
559 2130 5.512573 TTACGTGATCGCGACATTAAAAA 57.487 34.783 33.43 11.61 41.18 1.94
560 2131 5.512573 TTTACGTGATCGCGACATTAAAA 57.487 34.783 33.43 18.47 41.18 1.52
561 2132 5.307368 GTTTTACGTGATCGCGACATTAAA 58.693 37.500 33.43 22.58 41.18 1.52
562 2133 4.201608 GGTTTTACGTGATCGCGACATTAA 60.202 41.667 33.43 18.47 41.18 1.40
563 2134 3.304026 GGTTTTACGTGATCGCGACATTA 59.696 43.478 33.43 13.62 41.18 1.90
564 2135 2.093152 GGTTTTACGTGATCGCGACATT 59.907 45.455 33.43 14.67 41.18 2.71
565 2136 1.657094 GGTTTTACGTGATCGCGACAT 59.343 47.619 33.43 15.03 41.18 3.06
566 2137 1.062258 GGTTTTACGTGATCGCGACA 58.938 50.000 33.43 18.09 41.18 4.35
569 2140 3.910862 TTATGGTTTTACGTGATCGCG 57.089 42.857 26.14 26.14 41.18 5.87
570 2141 5.212589 AGTTTATGGTTTTACGTGATCGC 57.787 39.130 0.00 0.00 41.18 4.58
571 2142 7.292292 TCAAAGTTTATGGTTTTACGTGATCG 58.708 34.615 0.00 0.00 43.34 3.69
572 2143 9.113876 CTTCAAAGTTTATGGTTTTACGTGATC 57.886 33.333 0.00 0.00 0.00 2.92
573 2144 7.593644 GCTTCAAAGTTTATGGTTTTACGTGAT 59.406 33.333 0.00 0.00 0.00 3.06
574 2145 6.913673 GCTTCAAAGTTTATGGTTTTACGTGA 59.086 34.615 0.00 0.00 0.00 4.35
580 2151 9.696917 CTATTGAGCTTCAAAGTTTATGGTTTT 57.303 29.630 0.00 0.00 40.12 2.43
605 2176 9.701098 CATGATTTAATTGCCATGTATTTAGCT 57.299 29.630 0.00 0.00 33.62 3.32
606 2177 9.695526 TCATGATTTAATTGCCATGTATTTAGC 57.304 29.630 0.00 0.00 38.00 3.09
610 2181 7.156673 GGCTCATGATTTAATTGCCATGTATT 58.843 34.615 13.42 0.00 38.00 1.89
612 2183 5.278414 CGGCTCATGATTTAATTGCCATGTA 60.278 40.000 17.17 0.00 38.87 2.29
613 2184 4.500205 CGGCTCATGATTTAATTGCCATGT 60.500 41.667 17.17 0.00 38.87 3.21
614 2185 3.985279 CGGCTCATGATTTAATTGCCATG 59.015 43.478 17.17 0.00 38.87 3.66
615 2186 3.006110 CCGGCTCATGATTTAATTGCCAT 59.994 43.478 17.17 0.00 38.87 4.40
616 2187 2.361757 CCGGCTCATGATTTAATTGCCA 59.638 45.455 17.17 0.00 38.87 4.92
618 2189 2.622942 TCCCGGCTCATGATTTAATTGC 59.377 45.455 0.00 0.00 0.00 3.56
619 2190 4.520111 TGATCCCGGCTCATGATTTAATTG 59.480 41.667 0.00 0.00 0.00 2.32
620 2191 4.728772 TGATCCCGGCTCATGATTTAATT 58.271 39.130 0.00 0.00 0.00 1.40
621 2192 4.371624 TGATCCCGGCTCATGATTTAAT 57.628 40.909 0.00 0.00 0.00 1.40
625 2196 2.965671 AATGATCCCGGCTCATGATT 57.034 45.000 15.95 2.63 33.69 2.57
626 2197 3.584406 TCTTAATGATCCCGGCTCATGAT 59.416 43.478 15.95 4.37 33.69 2.45
627 2198 2.972021 TCTTAATGATCCCGGCTCATGA 59.028 45.455 15.95 8.04 33.69 3.07
628 2199 3.407424 TCTTAATGATCCCGGCTCATG 57.593 47.619 15.95 6.61 33.69 3.07
629 2200 3.808618 GCTTCTTAATGATCCCGGCTCAT 60.809 47.826 10.95 10.95 34.86 2.90
630 2201 2.485479 GCTTCTTAATGATCCCGGCTCA 60.485 50.000 7.33 7.33 0.00 4.26
631 2202 2.147150 GCTTCTTAATGATCCCGGCTC 58.853 52.381 0.00 0.00 0.00 4.70
632 2203 1.490490 TGCTTCTTAATGATCCCGGCT 59.510 47.619 0.00 0.00 0.00 5.52
633 2204 1.967319 TGCTTCTTAATGATCCCGGC 58.033 50.000 0.00 0.00 0.00 6.13
651 2222 4.471904 TCCACTTCCTACTTGCAGTATG 57.528 45.455 0.00 0.00 40.87 2.39
652 2223 5.700402 ATTCCACTTCCTACTTGCAGTAT 57.300 39.130 0.00 0.00 29.08 2.12
653 2224 5.499004 AATTCCACTTCCTACTTGCAGTA 57.501 39.130 0.00 0.00 0.00 2.74
654 2225 4.373156 AATTCCACTTCCTACTTGCAGT 57.627 40.909 0.00 0.00 0.00 4.40
655 2226 7.552687 TGTATTAATTCCACTTCCTACTTGCAG 59.447 37.037 0.00 0.00 0.00 4.41
656 2227 7.398829 TGTATTAATTCCACTTCCTACTTGCA 58.601 34.615 0.00 0.00 0.00 4.08
657 2228 7.859325 TGTATTAATTCCACTTCCTACTTGC 57.141 36.000 0.00 0.00 0.00 4.01
676 2247 9.362539 GTTTGATGCTTCTGAATTCATTGTATT 57.637 29.630 8.96 0.00 0.00 1.89
677 2248 7.977853 GGTTTGATGCTTCTGAATTCATTGTAT 59.022 33.333 8.96 7.11 0.00 2.29
678 2249 7.177216 AGGTTTGATGCTTCTGAATTCATTGTA 59.823 33.333 8.96 2.47 0.00 2.41
679 2250 6.014840 AGGTTTGATGCTTCTGAATTCATTGT 60.015 34.615 8.96 0.00 0.00 2.71
680 2251 6.395629 AGGTTTGATGCTTCTGAATTCATTG 58.604 36.000 8.96 3.57 0.00 2.82
681 2252 6.436532 AGAGGTTTGATGCTTCTGAATTCATT 59.563 34.615 8.96 0.00 0.00 2.57
682 2253 5.950549 AGAGGTTTGATGCTTCTGAATTCAT 59.049 36.000 8.96 5.37 0.00 2.57
683 2254 5.319453 AGAGGTTTGATGCTTCTGAATTCA 58.681 37.500 8.12 8.12 0.00 2.57
685 2256 7.765695 TTAAGAGGTTTGATGCTTCTGAATT 57.234 32.000 0.88 0.00 0.00 2.17
686 2257 7.951347 ATTAAGAGGTTTGATGCTTCTGAAT 57.049 32.000 0.88 0.00 0.00 2.57
687 2258 7.765695 AATTAAGAGGTTTGATGCTTCTGAA 57.234 32.000 0.88 0.00 0.00 3.02
688 2259 7.448161 TCAAATTAAGAGGTTTGATGCTTCTGA 59.552 33.333 0.88 0.00 38.88 3.27
689 2260 7.596494 TCAAATTAAGAGGTTTGATGCTTCTG 58.404 34.615 0.88 0.00 38.88 3.02
690 2261 7.667219 TCTCAAATTAAGAGGTTTGATGCTTCT 59.333 33.333 7.70 0.00 41.80 2.85
691 2262 7.820648 TCTCAAATTAAGAGGTTTGATGCTTC 58.179 34.615 7.70 0.00 41.80 3.86
692 2263 7.765695 TCTCAAATTAAGAGGTTTGATGCTT 57.234 32.000 7.70 0.00 41.80 3.91
693 2264 7.765695 TTCTCAAATTAAGAGGTTTGATGCT 57.234 32.000 7.70 0.00 41.80 3.79
694 2265 8.992835 ATTTCTCAAATTAAGAGGTTTGATGC 57.007 30.769 7.70 0.00 41.80 3.91
702 2273 9.578439 GGATCAACAATTTCTCAAATTAAGAGG 57.422 33.333 7.70 0.00 38.97 3.69
704 2275 9.912634 GTGGATCAACAATTTCTCAAATTAAGA 57.087 29.630 0.00 0.00 38.97 2.10
705 2276 9.918630 AGTGGATCAACAATTTCTCAAATTAAG 57.081 29.630 2.34 0.00 38.97 1.85
771 2342 5.871396 ATTTCTTAACGAGCCCTCTCATA 57.129 39.130 0.00 0.00 39.30 2.15
818 2550 7.873719 TTGAGGTGTTCAACTTTAGATTTGA 57.126 32.000 0.00 0.00 40.82 2.69
848 2580 5.755849 CTCCCTTATTTTAAAGCCCTCTCA 58.244 41.667 0.00 0.00 0.00 3.27
919 2684 2.659244 GTGTGAACGGCGGTCGAA 60.659 61.111 21.23 7.96 42.43 3.71
979 2745 6.449041 TGAAACCCCACTAAAACCCTATCTAT 59.551 38.462 0.00 0.00 0.00 1.98
980 2746 5.791664 TGAAACCCCACTAAAACCCTATCTA 59.208 40.000 0.00 0.00 0.00 1.98
981 2747 4.604490 TGAAACCCCACTAAAACCCTATCT 59.396 41.667 0.00 0.00 0.00 1.98
982 2748 4.703575 GTGAAACCCCACTAAAACCCTATC 59.296 45.833 0.00 0.00 34.38 2.08
1065 2835 4.415332 CCGCTGTGCTACGGTCGT 62.415 66.667 0.69 0.69 44.46 4.34
1243 3013 3.437795 GACGCGAGGGACGAGGAA 61.438 66.667 15.93 0.00 45.40 3.36
1255 3026 1.136336 GCACCAGAGTAAAAAGACGCG 60.136 52.381 3.53 3.53 0.00 6.01
1261 3032 1.418637 ACCGAGGCACCAGAGTAAAAA 59.581 47.619 0.00 0.00 0.00 1.94
1508 3280 3.526534 CAAAAGAGAAACCCCGCAAAAA 58.473 40.909 0.00 0.00 0.00 1.94
1509 3281 2.740256 GCAAAAGAGAAACCCCGCAAAA 60.740 45.455 0.00 0.00 0.00 2.44
1511 3283 0.387565 GCAAAAGAGAAACCCCGCAA 59.612 50.000 0.00 0.00 0.00 4.85
1512 3284 0.467290 AGCAAAAGAGAAACCCCGCA 60.467 50.000 0.00 0.00 0.00 5.69
1513 3285 0.673985 AAGCAAAAGAGAAACCCCGC 59.326 50.000 0.00 0.00 0.00 6.13
1514 3286 2.095212 GCTAAGCAAAAGAGAAACCCCG 60.095 50.000 0.00 0.00 0.00 5.73
1515 3287 3.157881 AGCTAAGCAAAAGAGAAACCCC 58.842 45.455 0.00 0.00 0.00 4.95
1516 3288 6.325596 CAATAGCTAAGCAAAAGAGAAACCC 58.674 40.000 0.00 0.00 0.00 4.11
1517 3289 6.325596 CCAATAGCTAAGCAAAAGAGAAACC 58.674 40.000 0.00 0.00 0.00 3.27
1518 3290 6.151144 TCCCAATAGCTAAGCAAAAGAGAAAC 59.849 38.462 0.00 0.00 0.00 2.78
1519 3291 6.245408 TCCCAATAGCTAAGCAAAAGAGAAA 58.755 36.000 0.00 0.00 0.00 2.52
1656 3430 2.977772 TCAGGGTTGCAACAAAAAGG 57.022 45.000 29.55 12.99 0.00 3.11
1709 3483 7.004086 TGTGAAGAAAATCTCCTTATTGGTGT 58.996 34.615 0.00 0.00 37.07 4.16
1781 3569 5.163612 TGCATTACAAAACAACTACACTGCA 60.164 36.000 0.00 0.00 32.84 4.41
1782 3570 5.277825 TGCATTACAAAACAACTACACTGC 58.722 37.500 0.00 0.00 0.00 4.40
1783 3571 7.748031 TTTGCATTACAAAACAACTACACTG 57.252 32.000 0.00 0.00 45.22 3.66
1907 3695 0.106719 AAAGGTGACACAGGGTGGTG 60.107 55.000 8.08 0.00 44.35 4.17
1994 3790 2.886587 AACGCACAATTAACGCCTAC 57.113 45.000 0.00 0.00 0.00 3.18
2049 3845 3.004315 GCAAAACACCTAGCACTTAAGCA 59.996 43.478 1.29 0.00 36.85 3.91
2057 3853 2.040278 AGGAGATGCAAAACACCTAGCA 59.960 45.455 0.00 0.00 41.73 3.49
2064 3860 2.573462 AGGCTCTAGGAGATGCAAAACA 59.427 45.455 0.00 0.00 0.00 2.83
2075 3872 1.828660 GCACGCCTAGGCTCTAGGA 60.829 63.158 30.55 0.00 36.85 2.94
2090 3887 2.706555 AGAAAAAGGCGCTTAAGCAC 57.293 45.000 26.29 17.28 42.21 4.40
2148 3945 3.941483 CTGCAGTTTGGGAGTTCGATAAT 59.059 43.478 5.25 0.00 0.00 1.28
2150 3947 2.354704 CCTGCAGTTTGGGAGTTCGATA 60.355 50.000 13.81 0.00 0.00 2.92
2299 4096 1.888512 AGTGCAAATTACAGTGGCCAG 59.111 47.619 5.11 0.00 0.00 4.85
2611 4410 0.035152 CACTTCTATGCCAGTGCCCA 60.035 55.000 0.00 0.00 34.33 5.36
2798 4599 6.996180 TTTTCCTTCTAGGATCGTATGGAT 57.004 37.500 10.62 0.00 45.34 3.41
2805 4606 9.547753 TCATTTCTATTTTTCCTTCTAGGATCG 57.452 33.333 0.00 0.00 45.34 3.69
3128 6955 7.223387 CAGACAAGCACAGCTAAAAAGATTTTT 59.777 33.333 8.25 8.25 38.25 1.94
3261 7088 2.415625 CCAGGTTACTCGTGTAGACAGC 60.416 54.545 0.00 0.00 0.00 4.40
3310 7137 4.926860 TGCATCATATGTGTATTAGCGC 57.073 40.909 0.00 0.00 0.00 5.92
3311 7138 6.180567 CGAATGCATCATATGTGTATTAGCG 58.819 40.000 15.82 13.45 33.07 4.26
3482 7309 0.894141 TTTGGCAAGTTGTGTGCTGT 59.106 45.000 4.48 0.00 41.88 4.40
3634 7489 1.537638 ACGCTCACACACACACAAAAA 59.462 42.857 0.00 0.00 0.00 1.94
3654 7512 2.076100 CAAATCAACACCTCTAGCGCA 58.924 47.619 11.47 0.00 0.00 6.09
3752 7610 8.934023 ACCTAAATTCATACAAGTTTCAAGGA 57.066 30.769 0.00 0.00 0.00 3.36
3770 7633 4.405036 GTCTTCTCGACCCCTAACCTAAAT 59.595 45.833 0.00 0.00 36.62 1.40
3820 7683 2.559785 GGACCAGAGTGCCATTGTG 58.440 57.895 0.00 0.00 0.00 3.33
3884 7747 1.736126 CATGTGTCTGCTGTAGCCTTG 59.264 52.381 0.80 0.00 41.18 3.61
3885 7748 1.339438 CCATGTGTCTGCTGTAGCCTT 60.339 52.381 0.80 0.00 41.18 4.35
3886 7749 0.251354 CCATGTGTCTGCTGTAGCCT 59.749 55.000 0.80 0.00 41.18 4.58
3887 7750 0.745845 CCCATGTGTCTGCTGTAGCC 60.746 60.000 0.80 0.00 41.18 3.93
3889 7752 0.745845 GGCCCATGTGTCTGCTGTAG 60.746 60.000 0.00 0.00 0.00 2.74
3890 7753 1.299648 GGCCCATGTGTCTGCTGTA 59.700 57.895 0.00 0.00 0.00 2.74
3891 7754 2.034687 GGCCCATGTGTCTGCTGT 59.965 61.111 0.00 0.00 0.00 4.40
3892 7755 2.753043 GGGCCCATGTGTCTGCTG 60.753 66.667 19.95 0.00 0.00 4.41
3893 7756 4.415150 CGGGCCCATGTGTCTGCT 62.415 66.667 24.92 0.00 0.00 4.24
3895 7758 4.415150 AGCGGGCCCATGTGTCTG 62.415 66.667 24.92 3.18 0.00 3.51
3907 7770 4.767255 GAGCTGTGGTGGAGCGGG 62.767 72.222 0.00 0.00 41.61 6.13
3908 7771 3.699894 AGAGCTGTGGTGGAGCGG 61.700 66.667 0.00 0.00 41.61 5.52
3909 7772 2.433838 CAGAGCTGTGGTGGAGCG 60.434 66.667 2.14 0.00 41.61 5.03
3910 7773 1.375268 GTCAGAGCTGTGGTGGAGC 60.375 63.158 11.47 0.00 36.65 4.70
3911 7774 0.683973 AAGTCAGAGCTGTGGTGGAG 59.316 55.000 11.47 0.00 0.00 3.86
3912 7775 0.681733 GAAGTCAGAGCTGTGGTGGA 59.318 55.000 11.47 0.00 0.00 4.02
3913 7776 0.394192 TGAAGTCAGAGCTGTGGTGG 59.606 55.000 11.47 0.00 0.00 4.61
3914 7777 2.245159 TTGAAGTCAGAGCTGTGGTG 57.755 50.000 11.47 0.00 0.00 4.17
3917 7780 2.965477 GCTTTGAAGTCAGAGCTGTG 57.035 50.000 14.75 4.05 46.73 3.66
3922 7785 3.549625 GCTTGGTTGCTTTGAAGTCAGAG 60.550 47.826 0.00 0.00 0.00 3.35
3923 7786 2.358898 GCTTGGTTGCTTTGAAGTCAGA 59.641 45.455 0.00 0.00 0.00 3.27
3924 7787 2.099592 TGCTTGGTTGCTTTGAAGTCAG 59.900 45.455 0.00 0.00 0.00 3.51
3926 7789 2.860136 GTTGCTTGGTTGCTTTGAAGTC 59.140 45.455 0.00 0.00 0.00 3.01
3927 7790 2.418609 GGTTGCTTGGTTGCTTTGAAGT 60.419 45.455 0.00 0.00 0.00 3.01
3928 7791 2.204237 GGTTGCTTGGTTGCTTTGAAG 58.796 47.619 0.00 0.00 0.00 3.02
3930 7793 0.463620 GGGTTGCTTGGTTGCTTTGA 59.536 50.000 0.00 0.00 0.00 2.69
3931 7794 0.177604 TGGGTTGCTTGGTTGCTTTG 59.822 50.000 0.00 0.00 0.00 2.77
3932 7795 1.130777 ATGGGTTGCTTGGTTGCTTT 58.869 45.000 0.00 0.00 0.00 3.51
3933 7796 0.393820 CATGGGTTGCTTGGTTGCTT 59.606 50.000 0.00 0.00 0.00 3.91
3935 7798 1.004679 CCATGGGTTGCTTGGTTGC 60.005 57.895 2.85 0.00 0.00 4.17
3936 7799 1.001181 CTTCCATGGGTTGCTTGGTTG 59.999 52.381 13.02 0.00 0.00 3.77
3937 7800 1.133199 TCTTCCATGGGTTGCTTGGTT 60.133 47.619 13.02 0.00 0.00 3.67
3938 7801 0.482446 TCTTCCATGGGTTGCTTGGT 59.518 50.000 13.02 0.00 0.00 3.67
3939 7802 1.180029 CTCTTCCATGGGTTGCTTGG 58.820 55.000 13.02 0.00 0.00 3.61
3940 7803 0.529378 GCTCTTCCATGGGTTGCTTG 59.471 55.000 13.02 0.00 0.00 4.01
3941 7804 0.112995 TGCTCTTCCATGGGTTGCTT 59.887 50.000 13.02 0.00 0.00 3.91
3942 7805 0.112995 TTGCTCTTCCATGGGTTGCT 59.887 50.000 13.02 0.00 0.00 3.91
3943 7806 0.244721 GTTGCTCTTCCATGGGTTGC 59.755 55.000 13.02 11.89 0.00 4.17
3945 7808 1.611673 CGAGTTGCTCTTCCATGGGTT 60.612 52.381 13.02 0.00 0.00 4.11
3948 7811 0.250234 TCCGAGTTGCTCTTCCATGG 59.750 55.000 4.97 4.97 0.00 3.66
3949 7812 1.338105 TGTCCGAGTTGCTCTTCCATG 60.338 52.381 0.00 0.00 0.00 3.66
3950 7813 0.976641 TGTCCGAGTTGCTCTTCCAT 59.023 50.000 0.00 0.00 0.00 3.41
3951 7814 0.033504 GTGTCCGAGTTGCTCTTCCA 59.966 55.000 0.00 0.00 0.00 3.53
3952 7815 1.009389 CGTGTCCGAGTTGCTCTTCC 61.009 60.000 0.00 0.00 35.63 3.46
3953 7816 1.618640 GCGTGTCCGAGTTGCTCTTC 61.619 60.000 0.00 0.00 35.63 2.87
3954 7817 1.664965 GCGTGTCCGAGTTGCTCTT 60.665 57.895 0.00 0.00 35.63 2.85
3956 7819 2.049063 AGCGTGTCCGAGTTGCTC 60.049 61.111 0.00 0.00 35.63 4.26
3958 7821 2.661866 ACAGCGTGTCCGAGTTGC 60.662 61.111 0.00 0.00 35.63 4.17
3959 7822 0.874175 TTCACAGCGTGTCCGAGTTG 60.874 55.000 8.22 0.00 34.79 3.16
3960 7823 0.597637 CTTCACAGCGTGTCCGAGTT 60.598 55.000 8.22 0.00 34.79 3.01
3961 7824 1.007271 CTTCACAGCGTGTCCGAGT 60.007 57.895 8.22 0.00 34.79 4.18
3963 7826 0.596600 GTTCTTCACAGCGTGTCCGA 60.597 55.000 8.22 2.50 34.79 4.55
3964 7827 1.557443 GGTTCTTCACAGCGTGTCCG 61.557 60.000 8.22 0.00 34.79 4.79
3965 7828 1.557443 CGGTTCTTCACAGCGTGTCC 61.557 60.000 8.22 4.94 34.79 4.02
3966 7829 0.596600 TCGGTTCTTCACAGCGTGTC 60.597 55.000 8.22 0.00 36.53 3.67
3967 7830 0.874607 GTCGGTTCTTCACAGCGTGT 60.875 55.000 8.22 0.00 36.53 4.49
3968 7831 0.597637 AGTCGGTTCTTCACAGCGTG 60.598 55.000 2.79 2.79 36.53 5.34
3969 7832 0.956633 TAGTCGGTTCTTCACAGCGT 59.043 50.000 0.00 0.00 36.53 5.07
3970 7833 2.279582 ATAGTCGGTTCTTCACAGCG 57.720 50.000 0.00 0.00 36.47 5.18
3971 7834 3.585862 TCAATAGTCGGTTCTTCACAGC 58.414 45.455 0.00 0.00 0.00 4.40
3974 7837 5.765072 GACTTCAATAGTCGGTTCTTCAC 57.235 43.478 0.00 0.00 43.59 3.18
3986 7849 1.752501 CGCGGCGTGGACTTCAATAG 61.753 60.000 15.36 0.00 0.00 1.73
3987 7850 1.807981 CGCGGCGTGGACTTCAATA 60.808 57.895 15.36 0.00 0.00 1.90
3988 7851 3.118454 CGCGGCGTGGACTTCAAT 61.118 61.111 15.36 0.00 0.00 2.57
3989 7852 4.287781 TCGCGGCGTGGACTTCAA 62.288 61.111 22.90 0.00 0.00 2.69
4002 7865 4.421479 ACAGAAGCTCGGGTCGCG 62.421 66.667 0.00 0.00 0.00 5.87
4005 7868 0.460987 CATCCACAGAAGCTCGGGTC 60.461 60.000 0.00 0.00 0.00 4.46
4006 7869 1.194781 ACATCCACAGAAGCTCGGGT 61.195 55.000 0.00 0.00 0.00 5.28
4007 7870 0.824109 TACATCCACAGAAGCTCGGG 59.176 55.000 0.00 0.00 0.00 5.14
4008 7871 2.898729 ATACATCCACAGAAGCTCGG 57.101 50.000 0.00 0.00 0.00 4.63
4009 7872 4.052159 AGAATACATCCACAGAAGCTCG 57.948 45.455 0.00 0.00 0.00 5.03
4010 7873 6.155475 AGTAGAATACATCCACAGAAGCTC 57.845 41.667 0.00 0.00 46.26 4.09
4012 7875 6.457528 GCAAAGTAGAATACATCCACAGAAGC 60.458 42.308 0.00 0.00 46.26 3.86
4013 7876 6.595326 TGCAAAGTAGAATACATCCACAGAAG 59.405 38.462 0.00 0.00 46.26 2.85
4028 7953 9.071221 CGCATAAAAATTTACATGCAAAGTAGA 57.929 29.630 25.01 0.00 31.45 2.59
4144 8072 6.210078 CAACGTACAACAATGGGTGTAAAAT 58.790 36.000 0.00 0.00 40.60 1.82
4156 8093 6.035866 CACAAGTACTTACCAACGTACAACAA 59.964 38.462 8.04 0.00 38.69 2.83
4229 8166 7.984475 ACAGGTATACATATGAAGCCCATAAA 58.016 34.615 10.38 0.00 40.79 1.40
4232 8169 7.755666 ATACAGGTATACATATGAAGCCCAT 57.244 36.000 10.38 0.19 39.25 4.00
4323 8593 2.423373 GGGAAATGCCTAATGGAGCTCA 60.423 50.000 17.19 1.87 36.66 4.26
4410 8681 5.808030 ACGAAGAAGCAAAACTAGCTAGATC 59.192 40.000 27.45 12.07 42.53 2.75
4439 8710 6.303839 TCTTTTTAGCACAATCCACTAGGTT 58.696 36.000 0.00 0.00 35.89 3.50
4440 8711 5.876357 TCTTTTTAGCACAATCCACTAGGT 58.124 37.500 0.00 0.00 35.89 3.08
4441 8712 5.163713 GCTCTTTTTAGCACAATCCACTAGG 60.164 44.000 0.00 0.00 42.30 3.02
4442 8713 5.873732 GCTCTTTTTAGCACAATCCACTAG 58.126 41.667 0.00 0.00 42.30 2.57
4443 8714 5.880054 GCTCTTTTTAGCACAATCCACTA 57.120 39.130 0.00 0.00 42.30 2.74
4444 8715 4.773323 GCTCTTTTTAGCACAATCCACT 57.227 40.909 0.00 0.00 42.30 4.00
4454 8725 7.542477 GGTCTTTTCCTATTTGCTCTTTTTAGC 59.458 37.037 0.00 0.00 43.08 3.09
4455 8726 8.576442 TGGTCTTTTCCTATTTGCTCTTTTTAG 58.424 33.333 0.00 0.00 0.00 1.85
4456 8727 8.472007 TGGTCTTTTCCTATTTGCTCTTTTTA 57.528 30.769 0.00 0.00 0.00 1.52
4457 8728 7.360113 TGGTCTTTTCCTATTTGCTCTTTTT 57.640 32.000 0.00 0.00 0.00 1.94
4458 8729 6.976934 TGGTCTTTTCCTATTTGCTCTTTT 57.023 33.333 0.00 0.00 0.00 2.27
4459 8730 6.551227 AGTTGGTCTTTTCCTATTTGCTCTTT 59.449 34.615 0.00 0.00 0.00 2.52
4460 8731 6.071320 AGTTGGTCTTTTCCTATTTGCTCTT 58.929 36.000 0.00 0.00 0.00 2.85
4461 8732 5.635120 AGTTGGTCTTTTCCTATTTGCTCT 58.365 37.500 0.00 0.00 0.00 4.09
4462 8733 5.966742 AGTTGGTCTTTTCCTATTTGCTC 57.033 39.130 0.00 0.00 0.00 4.26
4463 8734 5.946377 CCTAGTTGGTCTTTTCCTATTTGCT 59.054 40.000 0.00 0.00 0.00 3.91
4464 8735 5.944007 TCCTAGTTGGTCTTTTCCTATTTGC 59.056 40.000 0.00 0.00 37.07 3.68
4465 8736 8.581253 AATCCTAGTTGGTCTTTTCCTATTTG 57.419 34.615 0.00 0.00 37.07 2.32
4470 8741 9.429109 TTTTTAAATCCTAGTTGGTCTTTTCCT 57.571 29.630 0.00 0.00 37.07 3.36
4568 8839 1.138266 ACGTAGGTGTGTGAGCTGTTT 59.862 47.619 0.00 0.00 33.31 2.83
4680 8958 2.520465 TACGAGGCCTGACGTACGGA 62.520 60.000 19.65 6.36 42.61 4.69
4838 9118 2.566833 ACTGCAGTTGAGCAACCATA 57.433 45.000 15.25 0.00 45.13 2.74
4912 9193 1.403780 GCCTAGTGTTAGTGGGTGACG 60.404 57.143 0.00 0.00 0.00 4.35
4914 9195 1.899814 CTGCCTAGTGTTAGTGGGTGA 59.100 52.381 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.