Multiple sequence alignment - TraesCS6D01G235300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G235300 chr6D 100.000 4307 0 0 1 4307 330160154 330155848 0.000000e+00 7954.0
1 TraesCS6D01G235300 chr6D 93.718 971 55 3 3343 4307 397805321 397806291 0.000000e+00 1450.0
2 TraesCS6D01G235300 chr6D 90.038 261 24 2 429 688 94757177 94757436 1.920000e-88 337.0
3 TraesCS6D01G235300 chr6D 89.623 106 11 0 1 106 322536286 322536391 7.510000e-28 135.0
4 TraesCS6D01G235300 chr6D 84.416 77 12 0 2360 2436 425903621 425903545 4.620000e-10 76.8
5 TraesCS6D01G235300 chr6A 93.072 2656 104 26 701 3323 469434165 469431557 0.000000e+00 3812.0
6 TraesCS6D01G235300 chr6A 92.073 328 24 2 1 326 469434653 469434326 1.090000e-125 460.0
7 TraesCS6D01G235300 chr6A 85.915 71 10 0 2360 2430 570383479 570383409 4.620000e-10 76.8
8 TraesCS6D01G235300 chr6B 92.472 2670 118 30 698 3320 490253813 490256446 0.000000e+00 3740.0
9 TraesCS6D01G235300 chr6B 86.916 107 14 0 1 107 65080211 65080317 2.100000e-23 121.0
10 TraesCS6D01G235300 chr7D 95.469 971 39 1 3342 4307 538569375 538568405 0.000000e+00 1544.0
11 TraesCS6D01G235300 chr7D 84.519 239 33 4 2549 2785 528080135 528080371 2.590000e-57 233.0
12 TraesCS6D01G235300 chr3D 94.856 972 44 2 3342 4307 488477175 488476204 0.000000e+00 1513.0
13 TraesCS6D01G235300 chr3D 94.021 970 52 2 3343 4307 372766514 372765546 0.000000e+00 1465.0
14 TraesCS6D01G235300 chr3D 94.105 967 52 3 3343 4304 403295679 403296645 0.000000e+00 1465.0
15 TraesCS6D01G235300 chr3D 90.661 257 22 2 433 688 536423575 536423830 1.480000e-89 340.0
16 TraesCS6D01G235300 chr3D 89.051 274 25 4 433 705 466963224 466962955 6.900000e-88 335.0
17 TraesCS6D01G235300 chrUn 94.160 976 50 3 3338 4307 101657955 101658929 0.000000e+00 1480.0
18 TraesCS6D01G235300 chrUn 77.850 307 60 7 2667 2969 92744492 92744190 2.650000e-42 183.0
19 TraesCS6D01G235300 chrUn 77.391 230 41 3 1603 1831 92746368 92746149 4.520000e-25 126.0
20 TraesCS6D01G235300 chr2D 94.233 971 51 1 3342 4307 70227171 70226201 0.000000e+00 1478.0
21 TraesCS6D01G235300 chr2D 94.233 971 50 2 3343 4307 446112140 446113110 0.000000e+00 1478.0
22 TraesCS6D01G235300 chr2D 85.450 433 57 5 2534 2963 516370438 516370867 3.060000e-121 446.0
23 TraesCS6D01G235300 chr2D 89.121 239 25 1 1588 1826 516367722 516367959 3.260000e-76 296.0
24 TraesCS6D01G235300 chr2D 83.108 148 23 2 2043 2189 14106349 14106203 2.700000e-27 134.0
25 TraesCS6D01G235300 chr5D 93.924 971 54 1 3342 4307 254787481 254788451 0.000000e+00 1461.0
26 TraesCS6D01G235300 chr5D 89.338 272 26 3 419 688 366062766 366063036 5.330000e-89 339.0
27 TraesCS6D01G235300 chr2B 84.988 433 59 5 2534 2963 607953235 607953664 6.610000e-118 435.0
28 TraesCS6D01G235300 chr2B 87.866 239 28 1 1588 1826 607950677 607950914 3.280000e-71 279.0
29 TraesCS6D01G235300 chr2B 83.108 148 23 2 2043 2189 25687528 25687382 2.700000e-27 134.0
30 TraesCS6D01G235300 chr2B 89.796 98 10 0 2336 2433 25687084 25686987 4.520000e-25 126.0
31 TraesCS6D01G235300 chr2A 85.401 411 54 5 2534 2941 660224041 660224448 5.150000e-114 422.0
32 TraesCS6D01G235300 chr2A 83.108 148 23 2 2043 2189 16477998 16477852 2.700000e-27 134.0
33 TraesCS6D01G235300 chr1B 91.829 257 18 3 433 688 676806285 676806031 5.300000e-94 355.0
34 TraesCS6D01G235300 chr1B 91.051 257 21 2 433 688 252161660 252161915 3.190000e-91 346.0
35 TraesCS6D01G235300 chr1B 90.661 257 22 2 433 688 58253061 58253316 1.480000e-89 340.0
36 TraesCS6D01G235300 chr1B 86.792 106 14 0 2 107 328132055 328132160 7.570000e-23 119.0
37 TraesCS6D01G235300 chr3A 91.085 258 20 3 433 688 465820750 465820494 3.190000e-91 346.0
38 TraesCS6D01G235300 chr3A 90.661 257 22 2 433 688 12408996 12408741 1.480000e-89 340.0
39 TraesCS6D01G235300 chr7B 85.774 239 30 4 2549 2785 565577309 565577545 2.570000e-62 250.0
40 TraesCS6D01G235300 chr7B 79.130 230 37 5 1603 1831 730181129 730180910 9.650000e-32 148.0
41 TraesCS6D01G235300 chr7A 84.937 239 32 4 2549 2785 608359403 608359639 5.570000e-59 239.0
42 TraesCS6D01G235300 chr7A 77.826 230 40 3 1603 1831 724137187 724136968 9.720000e-27 132.0
43 TraesCS6D01G235300 chr7A 95.349 43 2 0 2385 2427 465377114 465377156 7.730000e-08 69.4
44 TraesCS6D01G235300 chr4B 88.571 105 12 0 3 107 273441198 273441302 1.260000e-25 128.0
45 TraesCS6D01G235300 chr4B 97.674 43 1 0 2383 2425 234387 234345 1.660000e-09 75.0
46 TraesCS6D01G235300 chr4A 87.850 107 13 0 1 107 427995491 427995385 4.520000e-25 126.0
47 TraesCS6D01G235300 chr4A 97.674 43 1 0 2383 2425 193726 193684 1.660000e-09 75.0
48 TraesCS6D01G235300 chr3B 87.850 107 13 0 1 107 683397026 683397132 4.520000e-25 126.0
49 TraesCS6D01G235300 chr3B 86.916 107 14 0 1 107 586720399 586720293 2.100000e-23 121.0
50 TraesCS6D01G235300 chr4D 77.209 215 43 6 2664 2875 464156698 464156909 2.100000e-23 121.0
51 TraesCS6D01G235300 chr4D 97.674 43 1 0 2383 2425 464280 464238 1.660000e-09 75.0
52 TraesCS6D01G235300 chr1A 86.916 107 14 0 1 107 68371112 68371006 2.100000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G235300 chr6D 330155848 330160154 4306 True 7954 7954 100.0000 1 4307 1 chr6D.!!$R1 4306
1 TraesCS6D01G235300 chr6D 397805321 397806291 970 False 1450 1450 93.7180 3343 4307 1 chr6D.!!$F3 964
2 TraesCS6D01G235300 chr6A 469431557 469434653 3096 True 2136 3812 92.5725 1 3323 2 chr6A.!!$R2 3322
3 TraesCS6D01G235300 chr6B 490253813 490256446 2633 False 3740 3740 92.4720 698 3320 1 chr6B.!!$F2 2622
4 TraesCS6D01G235300 chr7D 538568405 538569375 970 True 1544 1544 95.4690 3342 4307 1 chr7D.!!$R1 965
5 TraesCS6D01G235300 chr3D 488476204 488477175 971 True 1513 1513 94.8560 3342 4307 1 chr3D.!!$R3 965
6 TraesCS6D01G235300 chr3D 372765546 372766514 968 True 1465 1465 94.0210 3343 4307 1 chr3D.!!$R1 964
7 TraesCS6D01G235300 chr3D 403295679 403296645 966 False 1465 1465 94.1050 3343 4304 1 chr3D.!!$F1 961
8 TraesCS6D01G235300 chrUn 101657955 101658929 974 False 1480 1480 94.1600 3338 4307 1 chrUn.!!$F1 969
9 TraesCS6D01G235300 chr2D 70226201 70227171 970 True 1478 1478 94.2330 3342 4307 1 chr2D.!!$R2 965
10 TraesCS6D01G235300 chr2D 446112140 446113110 970 False 1478 1478 94.2330 3343 4307 1 chr2D.!!$F1 964
11 TraesCS6D01G235300 chr2D 516367722 516370867 3145 False 371 446 87.2855 1588 2963 2 chr2D.!!$F2 1375
12 TraesCS6D01G235300 chr5D 254787481 254788451 970 False 1461 1461 93.9240 3342 4307 1 chr5D.!!$F1 965
13 TraesCS6D01G235300 chr2B 607950677 607953664 2987 False 357 435 86.4270 1588 2963 2 chr2B.!!$F1 1375

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
441 493 0.033011 TGCTCCTGACTACTCCCTCC 60.033 60.0 0.0 0.0 0.00 4.30 F
803 858 0.248565 CAGCAGCTAGAGTTCCAGCA 59.751 55.0 0.0 0.0 40.36 4.41 F
1933 1999 0.318614 CCCAACCGAAATGTGTGTGC 60.319 55.0 0.0 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 2051 0.237498 GCACAAGGGTAAACAGACGC 59.763 55.0 0.0 0.0 0.00 5.19 R
1989 2057 0.313987 GCACCAGCACAAGGGTAAAC 59.686 55.0 0.0 0.0 41.58 2.01 R
3697 5689 0.032515 TCGGGGCCTCTGTATGAAGA 60.033 55.0 0.0 0.0 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.643733 CGTTTGCAATCCGCCAAA 57.356 50.000 0.00 0.00 41.33 3.28
18 19 2.892305 CGTTTGCAATCCGCCAAAA 58.108 47.368 0.00 0.00 41.33 2.44
28 29 2.396590 TCCGCCAAAACCATCTAGTC 57.603 50.000 0.00 0.00 0.00 2.59
55 56 1.987770 GCAATGTTCATGCGTTTGGAG 59.012 47.619 0.00 0.00 33.57 3.86
76 77 1.073199 CATAATCCCGAGGCCACCC 59.927 63.158 5.01 0.00 0.00 4.61
81 82 3.411517 CCCGAGGCCACCCTGATT 61.412 66.667 5.01 0.00 43.12 2.57
92 93 0.839946 ACCCTGATTGCGAGGCTTAT 59.160 50.000 0.00 0.00 0.00 1.73
115 116 4.424842 AGATCTCAGTCCACTCTTTTCCT 58.575 43.478 0.00 0.00 0.00 3.36
120 121 3.829601 TCAGTCCACTCTTTTCCTCTCTC 59.170 47.826 0.00 0.00 0.00 3.20
232 234 6.579666 TTCACAGGGATTTCAAAAGAGATG 57.420 37.500 0.00 0.00 0.00 2.90
264 267 1.324383 CCCACGGTTAGTTTTGCCTT 58.676 50.000 0.00 0.00 0.00 4.35
273 276 6.015772 ACGGTTAGTTTTGCCTTCATAAATGT 60.016 34.615 0.00 0.00 0.00 2.71
305 308 5.009710 CCAGATATACTGTTCTCCGTAGCAA 59.990 44.000 0.00 0.00 44.40 3.91
313 316 3.391665 CTCCGTAGCAAGGCAGGGG 62.392 68.421 0.00 0.00 0.00 4.79
330 382 3.007581 GGTAGGTGTGAGGACCCAT 57.992 57.895 0.00 0.00 36.56 4.00
349 401 5.483583 ACCCATTTATGTGTGCCTTAATTGT 59.516 36.000 0.00 0.00 0.00 2.71
362 414 7.094975 TGTGCCTTAATTGTTGTACATGTACTC 60.095 37.037 30.69 23.75 37.00 2.59
384 436 6.018180 ACTCGACAGTGAACTTTGAAATAACC 60.018 38.462 0.00 0.00 0.00 2.85
400 452 5.896073 AATAACCAAAATGTTGACCCCAA 57.104 34.783 0.00 0.00 36.83 4.12
401 453 3.836365 AACCAAAATGTTGACCCCAAG 57.164 42.857 0.00 0.00 36.83 3.61
402 454 2.758130 ACCAAAATGTTGACCCCAAGT 58.242 42.857 0.00 0.00 36.83 3.16
411 463 3.636300 TGTTGACCCCAAGTGATCAAAAG 59.364 43.478 0.00 0.00 33.09 2.27
431 483 9.109393 TCAAAAGTATGTTATTATGCTCCTGAC 57.891 33.333 0.00 0.00 0.00 3.51
434 486 9.765795 AAAGTATGTTATTATGCTCCTGACTAC 57.234 33.333 0.00 0.00 0.00 2.73
435 487 8.713708 AGTATGTTATTATGCTCCTGACTACT 57.286 34.615 0.00 0.00 0.00 2.57
436 488 8.798402 AGTATGTTATTATGCTCCTGACTACTC 58.202 37.037 0.00 0.00 0.00 2.59
438 490 5.304614 TGTTATTATGCTCCTGACTACTCCC 59.695 44.000 0.00 0.00 0.00 4.30
439 491 3.689872 TTATGCTCCTGACTACTCCCT 57.310 47.619 0.00 0.00 0.00 4.20
440 492 2.080654 ATGCTCCTGACTACTCCCTC 57.919 55.000 0.00 0.00 0.00 4.30
441 493 0.033011 TGCTCCTGACTACTCCCTCC 60.033 60.000 0.00 0.00 0.00 4.30
442 494 1.104577 GCTCCTGACTACTCCCTCCG 61.105 65.000 0.00 0.00 0.00 4.63
443 495 0.256464 CTCCTGACTACTCCCTCCGT 59.744 60.000 0.00 0.00 0.00 4.69
444 496 0.255318 TCCTGACTACTCCCTCCGTC 59.745 60.000 0.00 0.00 0.00 4.79
445 497 0.752376 CCTGACTACTCCCTCCGTCC 60.752 65.000 0.00 0.00 0.00 4.79
446 498 0.256464 CTGACTACTCCCTCCGTCCT 59.744 60.000 0.00 0.00 0.00 3.85
447 499 0.702902 TGACTACTCCCTCCGTCCTT 59.297 55.000 0.00 0.00 0.00 3.36
448 500 1.340795 TGACTACTCCCTCCGTCCTTC 60.341 57.143 0.00 0.00 0.00 3.46
449 501 0.702902 ACTACTCCCTCCGTCCTTCA 59.297 55.000 0.00 0.00 0.00 3.02
450 502 1.076677 ACTACTCCCTCCGTCCTTCAA 59.923 52.381 0.00 0.00 0.00 2.69
451 503 2.176889 CTACTCCCTCCGTCCTTCAAA 58.823 52.381 0.00 0.00 0.00 2.69
452 504 0.977395 ACTCCCTCCGTCCTTCAAAG 59.023 55.000 0.00 0.00 0.00 2.77
453 505 1.267121 CTCCCTCCGTCCTTCAAAGA 58.733 55.000 0.00 0.00 0.00 2.52
454 506 1.623811 CTCCCTCCGTCCTTCAAAGAA 59.376 52.381 0.00 0.00 0.00 2.52
455 507 2.237392 CTCCCTCCGTCCTTCAAAGAAT 59.763 50.000 0.00 0.00 0.00 2.40
456 508 2.027192 TCCCTCCGTCCTTCAAAGAATG 60.027 50.000 0.00 0.00 0.00 2.67
457 509 2.290323 CCCTCCGTCCTTCAAAGAATGT 60.290 50.000 0.00 0.00 0.00 2.71
458 510 3.055385 CCCTCCGTCCTTCAAAGAATGTA 60.055 47.826 0.00 0.00 0.00 2.29
459 511 3.933332 CCTCCGTCCTTCAAAGAATGTAC 59.067 47.826 0.00 0.00 0.00 2.90
460 512 4.322801 CCTCCGTCCTTCAAAGAATGTACT 60.323 45.833 0.00 0.00 0.00 2.73
461 513 5.223449 TCCGTCCTTCAAAGAATGTACTT 57.777 39.130 0.00 0.00 0.00 2.24
462 514 5.235516 TCCGTCCTTCAAAGAATGTACTTC 58.764 41.667 0.00 0.00 0.00 3.01
463 515 4.392138 CCGTCCTTCAAAGAATGTACTTCC 59.608 45.833 0.00 0.00 34.11 3.46
464 516 4.994852 CGTCCTTCAAAGAATGTACTTCCA 59.005 41.667 0.00 0.00 34.11 3.53
465 517 5.468746 CGTCCTTCAAAGAATGTACTTCCAA 59.531 40.000 0.00 0.00 34.11 3.53
466 518 6.565999 CGTCCTTCAAAGAATGTACTTCCAAC 60.566 42.308 0.00 0.00 34.11 3.77
467 519 6.486993 GTCCTTCAAAGAATGTACTTCCAACT 59.513 38.462 0.00 0.00 34.11 3.16
468 520 7.013369 GTCCTTCAAAGAATGTACTTCCAACTT 59.987 37.037 0.00 0.00 34.11 2.66
469 521 7.559897 TCCTTCAAAGAATGTACTTCCAACTTT 59.440 33.333 0.00 0.00 34.11 2.66
470 522 7.649306 CCTTCAAAGAATGTACTTCCAACTTTG 59.351 37.037 0.00 0.00 40.26 2.77
471 523 7.639113 TCAAAGAATGTACTTCCAACTTTGT 57.361 32.000 1.02 0.00 40.07 2.83
472 524 8.062065 TCAAAGAATGTACTTCCAACTTTGTT 57.938 30.769 1.02 0.00 40.07 2.83
473 525 7.973388 TCAAAGAATGTACTTCCAACTTTGTTG 59.027 33.333 1.02 3.69 40.07 3.33
474 526 6.391227 AGAATGTACTTCCAACTTTGTTGG 57.609 37.500 19.97 19.97 40.87 3.77
475 527 6.126409 AGAATGTACTTCCAACTTTGTTGGA 58.874 36.000 23.38 23.38 46.08 3.53
481 533 3.924114 TCCAACTTTGTTGGAGAGTCA 57.076 42.857 23.38 5.39 43.17 3.41
482 534 4.229304 TCCAACTTTGTTGGAGAGTCAA 57.771 40.909 23.38 4.76 43.17 3.18
483 535 4.594970 TCCAACTTTGTTGGAGAGTCAAA 58.405 39.130 23.38 4.13 43.17 2.69
484 536 4.398044 TCCAACTTTGTTGGAGAGTCAAAC 59.602 41.667 23.38 0.00 43.17 2.93
485 537 4.399303 CCAACTTTGTTGGAGAGTCAAACT 59.601 41.667 21.06 0.00 42.06 2.66
486 538 5.588648 CCAACTTTGTTGGAGAGTCAAACTA 59.411 40.000 21.06 0.00 42.06 2.24
487 539 6.263168 CCAACTTTGTTGGAGAGTCAAACTAT 59.737 38.462 21.06 0.00 42.06 2.12
488 540 7.201821 CCAACTTTGTTGGAGAGTCAAACTATT 60.202 37.037 21.06 0.00 42.06 1.73
489 541 7.881775 ACTTTGTTGGAGAGTCAAACTATTT 57.118 32.000 0.00 0.00 0.00 1.40
490 542 8.293699 ACTTTGTTGGAGAGTCAAACTATTTT 57.706 30.769 0.00 0.00 0.00 1.82
491 543 8.406297 ACTTTGTTGGAGAGTCAAACTATTTTC 58.594 33.333 0.00 0.00 0.00 2.29
492 544 7.873719 TTGTTGGAGAGTCAAACTATTTTCA 57.126 32.000 0.00 0.00 0.00 2.69
493 545 7.873719 TGTTGGAGAGTCAAACTATTTTCAA 57.126 32.000 0.00 0.00 0.00 2.69
494 546 8.287439 TGTTGGAGAGTCAAACTATTTTCAAA 57.713 30.769 0.00 0.00 0.00 2.69
495 547 8.912988 TGTTGGAGAGTCAAACTATTTTCAAAT 58.087 29.630 0.00 0.00 0.00 2.32
496 548 9.750125 GTTGGAGAGTCAAACTATTTTCAAATT 57.250 29.630 0.00 0.00 0.00 1.82
498 550 9.748708 TGGAGAGTCAAACTATTTTCAAATTTG 57.251 29.630 12.15 12.15 0.00 2.32
499 551 9.965824 GGAGAGTCAAACTATTTTCAAATTTGA 57.034 29.630 16.91 16.91 34.92 2.69
501 553 9.750125 AGAGTCAAACTATTTTCAAATTTGACC 57.250 29.630 20.35 12.01 40.78 4.02
502 554 8.574196 AGTCAAACTATTTTCAAATTTGACCG 57.426 30.769 20.35 9.45 40.78 4.79
503 555 8.410141 AGTCAAACTATTTTCAAATTTGACCGA 58.590 29.630 20.35 9.66 40.78 4.69
504 556 8.690840 GTCAAACTATTTTCAAATTTGACCGAG 58.309 33.333 20.35 16.02 37.52 4.63
505 557 8.410141 TCAAACTATTTTCAAATTTGACCGAGT 58.590 29.630 20.35 16.58 36.83 4.18
506 558 9.030301 CAAACTATTTTCAAATTTGACCGAGTT 57.970 29.630 20.35 20.50 36.83 3.01
507 559 9.594478 AAACTATTTTCAAATTTGACCGAGTTT 57.406 25.926 25.74 25.74 36.83 2.66
508 560 8.574196 ACTATTTTCAAATTTGACCGAGTTTG 57.426 30.769 20.35 8.66 36.83 2.93
509 561 5.710613 TTTTCAAATTTGACCGAGTTTGC 57.289 34.783 20.35 0.00 36.83 3.68
510 562 4.377839 TTCAAATTTGACCGAGTTTGCA 57.622 36.364 20.35 0.00 36.83 4.08
511 563 3.701241 TCAAATTTGACCGAGTTTGCAC 58.299 40.909 16.91 0.00 32.95 4.57
512 564 3.129462 TCAAATTTGACCGAGTTTGCACA 59.871 39.130 16.91 0.00 32.95 4.57
513 565 3.791973 AATTTGACCGAGTTTGCACAA 57.208 38.095 0.00 0.00 0.00 3.33
514 566 3.791973 ATTTGACCGAGTTTGCACAAA 57.208 38.095 0.00 0.00 0.00 2.83
515 567 3.577649 TTTGACCGAGTTTGCACAAAA 57.422 38.095 0.00 0.00 31.33 2.44
516 568 3.577649 TTGACCGAGTTTGCACAAAAA 57.422 38.095 0.00 0.00 31.33 1.94
517 569 3.791973 TGACCGAGTTTGCACAAAAAT 57.208 38.095 0.00 0.00 31.33 1.82
518 570 4.902443 TGACCGAGTTTGCACAAAAATA 57.098 36.364 0.00 0.00 31.33 1.40
519 571 5.446143 TGACCGAGTTTGCACAAAAATAT 57.554 34.783 0.00 0.00 31.33 1.28
520 572 6.561737 TGACCGAGTTTGCACAAAAATATA 57.438 33.333 0.00 0.00 31.33 0.86
521 573 7.151999 TGACCGAGTTTGCACAAAAATATAT 57.848 32.000 0.00 0.00 31.33 0.86
522 574 7.247728 TGACCGAGTTTGCACAAAAATATATC 58.752 34.615 0.00 0.00 31.33 1.63
523 575 7.094592 TGACCGAGTTTGCACAAAAATATATCA 60.095 33.333 0.00 0.00 31.33 2.15
524 576 7.598278 ACCGAGTTTGCACAAAAATATATCAA 58.402 30.769 0.00 0.00 31.33 2.57
525 577 8.250332 ACCGAGTTTGCACAAAAATATATCAAT 58.750 29.630 0.00 0.00 31.33 2.57
526 578 8.533965 CCGAGTTTGCACAAAAATATATCAATG 58.466 33.333 0.00 0.00 31.33 2.82
527 579 9.075519 CGAGTTTGCACAAAAATATATCAATGT 57.924 29.630 0.00 0.00 31.33 2.71
597 649 8.696043 AATCTAATGCTACTAATTTGATGGCA 57.304 30.769 0.00 0.00 32.33 4.92
598 650 8.874744 ATCTAATGCTACTAATTTGATGGCAT 57.125 30.769 0.00 0.00 40.04 4.40
599 651 9.964354 ATCTAATGCTACTAATTTGATGGCATA 57.036 29.630 0.00 0.00 37.85 3.14
600 652 9.791801 TCTAATGCTACTAATTTGATGGCATAA 57.208 29.630 0.00 0.00 37.85 1.90
603 655 9.701098 AATGCTACTAATTTGATGGCATAAATG 57.299 29.630 0.00 0.32 37.85 2.32
604 656 8.236585 TGCTACTAATTTGATGGCATAAATGT 57.763 30.769 0.00 5.58 0.00 2.71
605 657 8.694540 TGCTACTAATTTGATGGCATAAATGTT 58.305 29.630 0.00 0.57 0.00 2.71
606 658 8.971321 GCTACTAATTTGATGGCATAAATGTTG 58.029 33.333 0.00 5.40 0.00 3.33
607 659 9.467258 CTACTAATTTGATGGCATAAATGTTGG 57.533 33.333 0.00 2.80 0.00 3.77
608 660 7.850193 ACTAATTTGATGGCATAAATGTTGGT 58.150 30.769 0.00 3.42 0.00 3.67
609 661 6.988622 AATTTGATGGCATAAATGTTGGTG 57.011 33.333 0.00 0.00 0.00 4.17
610 662 5.480642 TTTGATGGCATAAATGTTGGTGT 57.519 34.783 0.00 0.00 0.00 4.16
611 663 6.596309 TTTGATGGCATAAATGTTGGTGTA 57.404 33.333 0.00 0.00 0.00 2.90
612 664 6.788598 TTGATGGCATAAATGTTGGTGTAT 57.211 33.333 0.00 0.00 0.00 2.29
613 665 6.788598 TGATGGCATAAATGTTGGTGTATT 57.211 33.333 0.00 0.00 0.00 1.89
614 666 7.888250 TGATGGCATAAATGTTGGTGTATTA 57.112 32.000 0.00 0.00 0.00 0.98
615 667 7.711846 TGATGGCATAAATGTTGGTGTATTAC 58.288 34.615 0.00 0.00 0.00 1.89
616 668 7.559533 TGATGGCATAAATGTTGGTGTATTACT 59.440 33.333 0.00 0.00 0.00 2.24
617 669 7.094508 TGGCATAAATGTTGGTGTATTACTG 57.905 36.000 0.00 0.00 0.00 2.74
618 670 6.661377 TGGCATAAATGTTGGTGTATTACTGT 59.339 34.615 0.00 0.00 0.00 3.55
619 671 7.829706 TGGCATAAATGTTGGTGTATTACTGTA 59.170 33.333 0.00 0.00 0.00 2.74
620 672 8.846211 GGCATAAATGTTGGTGTATTACTGTAT 58.154 33.333 0.00 0.00 0.00 2.29
658 710 9.883142 AACATAAATTCTTTTGACTTTCCAACA 57.117 25.926 0.00 0.00 34.03 3.33
659 711 9.883142 ACATAAATTCTTTTGACTTTCCAACAA 57.117 25.926 0.00 0.00 34.03 2.83
662 714 8.846943 AAATTCTTTTGACTTTCCAACAAAGT 57.153 26.923 0.00 0.00 42.62 2.66
663 715 8.846943 AATTCTTTTGACTTTCCAACAAAGTT 57.153 26.923 1.44 0.00 40.27 2.66
664 716 7.650834 TTCTTTTGACTTTCCAACAAAGTTG 57.349 32.000 3.00 3.00 40.27 3.16
665 717 6.987386 TCTTTTGACTTTCCAACAAAGTTGA 58.013 32.000 11.19 0.00 40.27 3.18
666 718 7.437748 TCTTTTGACTTTCCAACAAAGTTGAA 58.562 30.769 11.19 2.01 40.27 2.69
667 719 7.928706 TCTTTTGACTTTCCAACAAAGTTGAAA 59.071 29.630 11.19 8.66 40.27 2.69
668 720 7.650834 TTTGACTTTCCAACAAAGTTGAAAG 57.349 32.000 20.37 20.37 40.27 2.62
669 721 6.339587 TGACTTTCCAACAAAGTTGAAAGT 57.660 33.333 23.88 23.88 43.00 2.66
670 722 7.455641 TGACTTTCCAACAAAGTTGAAAGTA 57.544 32.000 23.79 16.20 41.21 2.24
671 723 8.062065 TGACTTTCCAACAAAGTTGAAAGTAT 57.938 30.769 23.79 13.25 41.21 2.12
672 724 9.179909 TGACTTTCCAACAAAGTTGAAAGTATA 57.820 29.630 23.79 18.12 41.21 1.47
687 739 9.543018 GTTGAAAGTATAATCTTCAAAGAACGG 57.457 33.333 10.14 0.00 38.77 4.44
688 740 7.748847 TGAAAGTATAATCTTCAAAGAACGGC 58.251 34.615 0.00 0.00 38.77 5.68
689 741 5.968387 AGTATAATCTTCAAAGAACGGCG 57.032 39.130 4.80 4.80 38.77 6.46
690 742 5.657474 AGTATAATCTTCAAAGAACGGCGA 58.343 37.500 16.62 0.00 38.77 5.54
691 743 4.859629 ATAATCTTCAAAGAACGGCGAC 57.140 40.909 16.62 7.38 38.77 5.19
706 758 3.382048 GGCGACGGAAGGAGTATATTT 57.618 47.619 0.00 0.00 0.00 1.40
707 759 3.315418 GGCGACGGAAGGAGTATATTTC 58.685 50.000 0.00 0.00 0.00 2.17
711 763 4.910456 CGACGGAAGGAGTATATTTCTTCG 59.090 45.833 9.51 7.89 37.18 3.79
718 770 5.952033 AGGAGTATATTTCTTCGGCGTATC 58.048 41.667 6.85 0.00 0.00 2.24
760 815 4.399395 TCCCCTGCAGCAGCTTCG 62.399 66.667 17.81 3.02 42.74 3.79
803 858 0.248565 CAGCAGCTAGAGTTCCAGCA 59.751 55.000 0.00 0.00 40.36 4.41
807 862 0.617249 AGCTAGAGTTCCAGCAGGCT 60.617 55.000 0.00 0.00 40.36 4.58
808 863 1.115467 GCTAGAGTTCCAGCAGGCTA 58.885 55.000 0.00 0.00 37.73 3.93
822 877 0.890996 AGGCTACAAGCTGCAACCAC 60.891 55.000 1.02 0.00 41.99 4.16
872 930 0.737715 AGTGACGCGCTCATTTCTCC 60.738 55.000 5.73 0.00 0.00 3.71
883 941 6.292865 CGCGCTCATTTCTCCTTTGATTATTA 60.293 38.462 5.56 0.00 0.00 0.98
1061 1120 0.392336 GCCCAAAGTCACATTTGCCA 59.608 50.000 0.00 0.00 38.57 4.92
1118 1177 2.695666 TCGAGGGACCTGATTGAGATTC 59.304 50.000 0.00 0.00 0.00 2.52
1171 1230 4.282195 TCAAGTCAGAAGAAAGAGGAGGAC 59.718 45.833 0.00 0.00 0.00 3.85
1178 1237 3.100207 AGAAAGAGGAGGACAGGAGAG 57.900 52.381 0.00 0.00 0.00 3.20
1279 1339 3.515286 GCAGTGGCGCATCATGCT 61.515 61.111 10.83 0.00 42.25 3.79
1316 1376 4.753610 TCGCCATGATTCTCAATTGATCTC 59.246 41.667 8.96 6.82 0.00 2.75
1356 1416 4.196193 TGATGGGATTCACCGTGTATTTC 58.804 43.478 0.00 0.00 40.11 2.17
1382 1442 5.287752 GTCGATATTTACAACTTCTGACGCA 59.712 40.000 0.00 0.00 0.00 5.24
1682 1748 1.129058 ACTTCAAGTCGGACACCCTT 58.871 50.000 11.27 0.00 0.00 3.95
1933 1999 0.318614 CCCAACCGAAATGTGTGTGC 60.319 55.000 0.00 0.00 0.00 4.57
1935 2001 1.008995 AACCGAAATGTGTGTGCGC 60.009 52.632 0.00 0.00 0.00 6.09
1936 2002 2.126888 CCGAAATGTGTGTGCGCC 60.127 61.111 4.18 0.00 0.00 6.53
1937 2003 2.616330 CCGAAATGTGTGTGCGCCT 61.616 57.895 4.18 0.00 0.00 5.52
1938 2004 1.282570 CGAAATGTGTGTGCGCCTT 59.717 52.632 4.18 0.00 0.00 4.35
1939 2005 0.725784 CGAAATGTGTGTGCGCCTTC 60.726 55.000 4.18 0.00 0.00 3.46
1940 2006 0.387239 GAAATGTGTGTGCGCCTTCC 60.387 55.000 4.18 0.00 0.00 3.46
1941 2007 1.106351 AAATGTGTGTGCGCCTTCCA 61.106 50.000 4.18 0.00 0.00 3.53
1946 2014 2.434185 TGTGCGCCTTCCACGATC 60.434 61.111 4.18 0.00 36.01 3.69
1956 2024 2.424601 CCTTCCACGATCATGCATGTTT 59.575 45.455 25.43 14.74 0.00 2.83
1968 2036 4.403113 TCATGCATGTTTAGTGATTGGCAT 59.597 37.500 25.43 0.00 41.01 4.40
1987 2055 2.127270 CACGTTGGCATGTGCGTC 60.127 61.111 7.35 0.00 43.26 5.19
1988 2056 2.280797 ACGTTGGCATGTGCGTCT 60.281 55.556 0.00 0.00 43.26 4.18
1989 2057 2.174107 CGTTGGCATGTGCGTCTG 59.826 61.111 0.00 0.00 43.26 3.51
1990 2058 2.606961 CGTTGGCATGTGCGTCTGT 61.607 57.895 0.00 0.00 43.26 3.41
1991 2059 1.654220 GTTGGCATGTGCGTCTGTT 59.346 52.632 0.00 0.00 43.26 3.16
1992 2060 0.030638 GTTGGCATGTGCGTCTGTTT 59.969 50.000 0.00 0.00 43.26 2.83
2005 2388 1.880027 GTCTGTTTACCCTTGTGCTGG 59.120 52.381 0.00 0.00 0.00 4.85
2225 2641 3.494626 CCGGCACATACATATCAACTGAC 59.505 47.826 0.00 0.00 0.00 3.51
2226 2642 4.371786 CGGCACATACATATCAACTGACT 58.628 43.478 0.00 0.00 0.00 3.41
2228 2644 5.359756 GGCACATACATATCAACTGACTGA 58.640 41.667 0.00 0.00 0.00 3.41
2241 2708 4.576216 ACTGACTGATTAGATACGCAGG 57.424 45.455 0.00 0.00 32.82 4.85
2271 3958 2.665519 GCTAACACGAACAGCATTGTGG 60.666 50.000 8.76 0.00 38.74 4.17
2469 4406 2.107141 CTCGCCGGTGATCCTTCC 59.893 66.667 19.93 0.00 0.00 3.46
2471 4408 2.107141 CGCCGGTGATCCTTCCTC 59.893 66.667 10.20 0.00 0.00 3.71
2477 4414 0.397254 GGTGATCCTTCCTCTCCCGA 60.397 60.000 0.00 0.00 0.00 5.14
2488 4429 2.111932 CTCTCCCGAGCTCGATCACG 62.112 65.000 36.59 19.16 43.02 4.35
2899 4849 3.349006 CTCACGCTGCGTTGCCTT 61.349 61.111 26.77 0.00 38.32 4.35
2982 4950 4.431131 CATGTCCAGGGGCGGCTT 62.431 66.667 9.56 0.00 0.00 4.35
3142 5119 2.094417 GGTAGCGACTGAAATTGTGCTC 59.906 50.000 0.00 0.00 34.08 4.26
3160 5137 0.611618 TCCGGCACTTGGATTTGCAT 60.612 50.000 0.00 0.00 40.75 3.96
3233 5218 2.977772 TGTGTCATATGGATGTGCGA 57.022 45.000 2.13 0.00 34.41 5.10
3239 5224 5.063944 GTGTCATATGGATGTGCGATAATCC 59.936 44.000 2.13 4.27 42.40 3.01
3262 5247 1.066787 TGGTTGGCATGTTCGTATCGA 60.067 47.619 0.00 0.00 0.00 3.59
3320 5306 3.057315 CACCCTGTAAGCCAGTTCAAATG 60.057 47.826 0.00 0.00 39.74 2.32
3323 5309 4.764823 CCCTGTAAGCCAGTTCAAATGTTA 59.235 41.667 0.00 0.00 39.74 2.41
3324 5310 5.106157 CCCTGTAAGCCAGTTCAAATGTTAG 60.106 44.000 0.00 0.00 39.74 2.34
3325 5311 5.705441 CCTGTAAGCCAGTTCAAATGTTAGA 59.295 40.000 0.00 0.00 39.74 2.10
3326 5312 6.128172 CCTGTAAGCCAGTTCAAATGTTAGAG 60.128 42.308 0.00 0.00 39.74 2.43
3327 5313 6.530120 TGTAAGCCAGTTCAAATGTTAGAGA 58.470 36.000 0.00 0.00 0.00 3.10
3328 5314 7.168219 TGTAAGCCAGTTCAAATGTTAGAGAT 58.832 34.615 0.00 0.00 0.00 2.75
3329 5315 6.749923 AAGCCAGTTCAAATGTTAGAGATC 57.250 37.500 0.00 0.00 0.00 2.75
3330 5316 5.809001 AGCCAGTTCAAATGTTAGAGATCA 58.191 37.500 0.00 0.00 0.00 2.92
3331 5317 5.645497 AGCCAGTTCAAATGTTAGAGATCAC 59.355 40.000 0.00 0.00 0.00 3.06
3332 5318 5.412594 GCCAGTTCAAATGTTAGAGATCACA 59.587 40.000 0.00 0.00 0.00 3.58
3333 5319 6.621596 GCCAGTTCAAATGTTAGAGATCACAC 60.622 42.308 0.00 0.00 0.00 3.82
3334 5320 6.401474 CCAGTTCAAATGTTAGAGATCACACG 60.401 42.308 0.00 0.00 0.00 4.49
3335 5321 6.366061 CAGTTCAAATGTTAGAGATCACACGA 59.634 38.462 0.00 0.00 0.00 4.35
3336 5322 7.063898 CAGTTCAAATGTTAGAGATCACACGAT 59.936 37.037 0.00 0.00 33.31 3.73
3337 5323 6.892310 TCAAATGTTAGAGATCACACGATG 57.108 37.500 0.00 0.00 29.66 3.84
3338 5324 6.398095 TCAAATGTTAGAGATCACACGATGT 58.602 36.000 0.00 0.00 29.66 3.06
3339 5325 6.531594 TCAAATGTTAGAGATCACACGATGTC 59.468 38.462 0.00 0.00 41.24 3.06
3340 5326 4.016113 TGTTAGAGATCACACGATGTCG 57.984 45.455 0.11 0.11 44.65 4.35
3345 5331 1.202348 AGATCACACGATGTCGCTGAA 59.798 47.619 1.77 0.00 44.43 3.02
3463 5450 1.626356 CCGGATTGGGCTCTCCTTGA 61.626 60.000 0.00 0.00 36.20 3.02
3467 5454 0.693049 ATTGGGCTCTCCTTGACGTT 59.307 50.000 0.00 0.00 36.20 3.99
3534 5526 6.240549 ACCTCATGTAACCCTAAATCTCTG 57.759 41.667 0.00 0.00 0.00 3.35
3611 5603 9.116067 CCATATACTCATAGGCTAGACTTCTAC 57.884 40.741 1.68 0.00 0.00 2.59
3622 5614 3.589495 AGACTTCTACGGTTTAGCCAC 57.411 47.619 0.00 0.00 36.97 5.01
3697 5689 7.072454 TCAATCAAGCAGGAAGTAGGGTATTAT 59.928 37.037 0.00 0.00 0.00 1.28
3700 5692 6.615726 TCAAGCAGGAAGTAGGGTATTATCTT 59.384 38.462 0.00 0.00 0.00 2.40
3705 5697 8.035984 GCAGGAAGTAGGGTATTATCTTCATAC 58.964 40.741 0.00 0.00 37.02 2.39
3711 5703 6.613153 AGGGTATTATCTTCATACAGAGGC 57.387 41.667 0.00 0.00 0.00 4.70
3737 5729 1.695242 ACCTGGGTAAACATCGTGTCA 59.305 47.619 0.00 0.00 0.00 3.58
3778 5770 2.338620 CCAGACGCACAGTTCGGA 59.661 61.111 0.00 0.00 0.00 4.55
3840 5833 3.823304 GGTGCTTTCATTGAGAGTTCCTT 59.177 43.478 6.13 0.00 0.00 3.36
3950 5943 2.125552 TCAGCGGCTTCGTCATGG 60.126 61.111 0.00 0.00 36.07 3.66
4051 6044 1.673168 GCATGGATCCAGTGGAGTTC 58.327 55.000 21.33 11.07 34.05 3.01
4109 6102 1.342674 TGGGGGTCGCTACAGACTATT 60.343 52.381 0.00 0.00 40.76 1.73
4173 6166 2.893489 CACCGATCACCCATCAGATAGA 59.107 50.000 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.273838 TGCCCTCCTGACTAGATGGTT 60.274 52.381 0.00 0.00 0.00 3.67
18 19 0.339859 TGCCCTCCTGACTAGATGGT 59.660 55.000 0.00 0.00 0.00 3.55
28 29 0.458669 GCATGAACATTGCCCTCCTG 59.541 55.000 0.00 0.00 0.00 3.86
65 66 2.124570 CAATCAGGGTGGCCTCGG 60.125 66.667 3.32 0.00 0.00 4.63
66 67 2.825836 GCAATCAGGGTGGCCTCG 60.826 66.667 3.32 0.00 0.00 4.63
76 77 5.070770 AGATCTATAAGCCTCGCAATCAG 57.929 43.478 0.00 0.00 0.00 2.90
81 82 3.491342 ACTGAGATCTATAAGCCTCGCA 58.509 45.455 0.00 0.00 0.00 5.10
92 93 5.584913 AGGAAAAGAGTGGACTGAGATCTA 58.415 41.667 0.00 0.00 0.00 1.98
180 181 1.267574 GGGATGCTCCTGTGAGGACA 61.268 60.000 0.00 0.00 42.17 4.02
181 182 1.267574 TGGGATGCTCCTGTGAGGAC 61.268 60.000 0.00 0.00 42.17 3.85
189 190 4.660303 TGAATTACAGTATGGGATGCTCCT 59.340 41.667 2.79 0.00 43.62 3.69
211 212 6.770746 ATCATCTCTTTTGAAATCCCTGTG 57.229 37.500 0.00 0.00 0.00 3.66
212 213 9.484806 AAATATCATCTCTTTTGAAATCCCTGT 57.515 29.630 0.00 0.00 0.00 4.00
226 228 5.590259 CGTGGGTTTGGAAAATATCATCTCT 59.410 40.000 0.00 0.00 0.00 3.10
232 234 4.794278 AACCGTGGGTTTGGAAAATATC 57.206 40.909 0.00 0.00 44.33 1.63
264 267 9.875691 GTATATCTGGTGCTGATACATTTATGA 57.124 33.333 0.00 0.00 29.64 2.15
273 276 6.209589 GGAGAACAGTATATCTGGTGCTGATA 59.790 42.308 0.00 0.00 45.06 2.15
305 308 1.613630 CTCACACCTACCCCTGCCT 60.614 63.158 0.00 0.00 0.00 4.75
313 316 4.080526 ACATAAATGGGTCCTCACACCTAC 60.081 45.833 0.00 0.00 36.57 3.18
330 382 7.941919 TGTACAACAATTAAGGCACACATAAA 58.058 30.769 0.00 0.00 0.00 1.40
349 401 5.009310 AGTTCACTGTCGAGTACATGTACAA 59.991 40.000 32.02 17.41 37.50 2.41
362 414 6.055231 TGGTTATTTCAAAGTTCACTGTCG 57.945 37.500 0.00 0.00 0.00 4.35
384 436 4.039004 TGATCACTTGGGGTCAACATTTTG 59.961 41.667 0.00 0.00 0.00 2.44
401 453 9.884465 GGAGCATAATAACATACTTTTGATCAC 57.116 33.333 0.00 0.00 0.00 3.06
402 454 9.851686 AGGAGCATAATAACATACTTTTGATCA 57.148 29.630 0.00 0.00 0.00 2.92
411 463 8.030106 GGAGTAGTCAGGAGCATAATAACATAC 58.970 40.741 0.00 0.00 0.00 2.39
431 483 1.848652 TTGAAGGACGGAGGGAGTAG 58.151 55.000 0.00 0.00 0.00 2.57
433 485 0.977395 CTTTGAAGGACGGAGGGAGT 59.023 55.000 0.00 0.00 0.00 3.85
434 486 1.267121 TCTTTGAAGGACGGAGGGAG 58.733 55.000 0.00 0.00 0.00 4.30
435 487 1.724545 TTCTTTGAAGGACGGAGGGA 58.275 50.000 0.00 0.00 0.00 4.20
436 488 2.290323 ACATTCTTTGAAGGACGGAGGG 60.290 50.000 0.00 0.00 0.00 4.30
438 490 4.822026 AGTACATTCTTTGAAGGACGGAG 58.178 43.478 0.00 0.00 0.00 4.63
439 491 4.884668 AGTACATTCTTTGAAGGACGGA 57.115 40.909 0.00 0.00 0.00 4.69
440 492 4.392138 GGAAGTACATTCTTTGAAGGACGG 59.608 45.833 0.00 0.00 38.07 4.79
441 493 4.994852 TGGAAGTACATTCTTTGAAGGACG 59.005 41.667 0.00 0.00 38.07 4.79
442 494 6.486993 AGTTGGAAGTACATTCTTTGAAGGAC 59.513 38.462 0.00 0.00 38.07 3.85
443 495 6.601332 AGTTGGAAGTACATTCTTTGAAGGA 58.399 36.000 0.00 0.00 38.07 3.36
444 496 6.884280 AGTTGGAAGTACATTCTTTGAAGG 57.116 37.500 0.00 0.00 38.07 3.46
445 497 8.190784 ACAAAGTTGGAAGTACATTCTTTGAAG 58.809 33.333 19.46 3.98 40.65 3.02
446 498 8.062065 ACAAAGTTGGAAGTACATTCTTTGAA 57.938 30.769 19.46 0.00 40.65 2.69
447 499 7.639113 ACAAAGTTGGAAGTACATTCTTTGA 57.361 32.000 19.46 0.00 40.65 2.69
448 500 7.222611 CCAACAAAGTTGGAAGTACATTCTTTG 59.777 37.037 21.24 14.64 42.06 2.77
449 501 7.123547 TCCAACAAAGTTGGAAGTACATTCTTT 59.876 33.333 24.83 0.00 44.90 2.52
450 502 6.605594 TCCAACAAAGTTGGAAGTACATTCTT 59.394 34.615 24.83 0.00 44.90 2.52
451 503 6.126409 TCCAACAAAGTTGGAAGTACATTCT 58.874 36.000 24.83 0.00 44.90 2.40
452 504 6.262273 TCTCCAACAAAGTTGGAAGTACATTC 59.738 38.462 26.25 0.00 46.85 2.67
453 505 6.126409 TCTCCAACAAAGTTGGAAGTACATT 58.874 36.000 26.25 0.00 46.85 2.71
454 506 5.690865 TCTCCAACAAAGTTGGAAGTACAT 58.309 37.500 26.25 0.00 46.85 2.29
455 507 5.105567 TCTCCAACAAAGTTGGAAGTACA 57.894 39.130 26.25 8.75 46.85 2.90
456 508 5.123936 ACTCTCCAACAAAGTTGGAAGTAC 58.876 41.667 26.25 0.00 46.85 2.73
457 509 5.104693 TGACTCTCCAACAAAGTTGGAAGTA 60.105 40.000 27.19 18.52 46.85 2.24
458 510 4.200092 GACTCTCCAACAAAGTTGGAAGT 58.800 43.478 27.33 27.33 46.85 3.01
459 511 4.199310 TGACTCTCCAACAAAGTTGGAAG 58.801 43.478 26.25 24.81 46.85 3.46
460 512 4.229304 TGACTCTCCAACAAAGTTGGAA 57.771 40.909 26.25 17.81 46.85 3.53
461 513 3.924114 TGACTCTCCAACAAAGTTGGA 57.076 42.857 25.17 25.17 45.61 3.53
462 514 4.399303 AGTTTGACTCTCCAACAAAGTTGG 59.601 41.667 20.09 20.09 40.87 3.77
463 515 5.567138 AGTTTGACTCTCCAACAAAGTTG 57.433 39.130 3.00 3.00 34.79 3.16
464 516 7.881775 AATAGTTTGACTCTCCAACAAAGTT 57.118 32.000 0.00 0.00 37.95 2.66
465 517 7.881775 AAATAGTTTGACTCTCCAACAAAGT 57.118 32.000 0.00 0.00 39.45 2.66
466 518 8.405531 TGAAAATAGTTTGACTCTCCAACAAAG 58.594 33.333 0.00 0.00 34.86 2.77
467 519 8.287439 TGAAAATAGTTTGACTCTCCAACAAA 57.713 30.769 0.00 0.00 0.00 2.83
468 520 7.873719 TGAAAATAGTTTGACTCTCCAACAA 57.126 32.000 0.00 0.00 0.00 2.83
469 521 7.873719 TTGAAAATAGTTTGACTCTCCAACA 57.126 32.000 0.00 0.00 0.00 3.33
470 522 9.750125 AATTTGAAAATAGTTTGACTCTCCAAC 57.250 29.630 0.00 0.00 0.00 3.77
472 524 9.748708 CAAATTTGAAAATAGTTTGACTCTCCA 57.251 29.630 13.08 0.00 0.00 3.86
473 525 9.965824 TCAAATTTGAAAATAGTTTGACTCTCC 57.034 29.630 18.45 0.00 33.55 3.71
475 527 9.750125 GGTCAAATTTGAAAATAGTTTGACTCT 57.250 29.630 22.07 0.00 40.29 3.24
476 528 8.690840 CGGTCAAATTTGAAAATAGTTTGACTC 58.309 33.333 22.07 16.35 40.29 3.36
477 529 8.410141 TCGGTCAAATTTGAAAATAGTTTGACT 58.590 29.630 22.07 0.00 40.29 3.41
478 530 8.568732 TCGGTCAAATTTGAAAATAGTTTGAC 57.431 30.769 22.07 19.08 40.01 3.18
479 531 8.410141 ACTCGGTCAAATTTGAAAATAGTTTGA 58.590 29.630 22.07 8.73 39.21 2.69
480 532 8.574196 ACTCGGTCAAATTTGAAAATAGTTTG 57.426 30.769 22.07 8.44 39.21 2.93
481 533 9.594478 AAACTCGGTCAAATTTGAAAATAGTTT 57.406 25.926 26.66 26.66 39.21 2.66
482 534 9.030301 CAAACTCGGTCAAATTTGAAAATAGTT 57.970 29.630 22.07 21.84 39.21 2.24
483 535 7.169140 GCAAACTCGGTCAAATTTGAAAATAGT 59.831 33.333 22.07 18.11 39.21 2.12
484 536 7.168972 TGCAAACTCGGTCAAATTTGAAAATAG 59.831 33.333 22.07 17.55 39.21 1.73
485 537 6.980978 TGCAAACTCGGTCAAATTTGAAAATA 59.019 30.769 22.07 7.81 39.21 1.40
486 538 5.814705 TGCAAACTCGGTCAAATTTGAAAAT 59.185 32.000 22.07 4.41 39.21 1.82
487 539 5.062809 GTGCAAACTCGGTCAAATTTGAAAA 59.937 36.000 22.07 9.80 39.21 2.29
488 540 4.564769 GTGCAAACTCGGTCAAATTTGAAA 59.435 37.500 22.07 10.13 39.21 2.69
489 541 4.109050 GTGCAAACTCGGTCAAATTTGAA 58.891 39.130 22.07 6.66 39.21 2.69
490 542 3.129462 TGTGCAAACTCGGTCAAATTTGA 59.871 39.130 16.91 16.91 34.62 2.69
491 543 3.443037 TGTGCAAACTCGGTCAAATTTG 58.557 40.909 12.15 12.15 35.57 2.32
492 544 3.791973 TGTGCAAACTCGGTCAAATTT 57.208 38.095 0.00 0.00 0.00 1.82
493 545 3.791973 TTGTGCAAACTCGGTCAAATT 57.208 38.095 0.00 0.00 0.00 1.82
494 546 3.791973 TTTGTGCAAACTCGGTCAAAT 57.208 38.095 0.00 0.00 0.00 2.32
495 547 3.577649 TTTTGTGCAAACTCGGTCAAA 57.422 38.095 0.00 0.00 0.00 2.69
496 548 3.577649 TTTTTGTGCAAACTCGGTCAA 57.422 38.095 0.00 0.00 0.00 3.18
497 549 3.791973 ATTTTTGTGCAAACTCGGTCA 57.208 38.095 0.00 0.00 0.00 4.02
498 550 7.247728 TGATATATTTTTGTGCAAACTCGGTC 58.752 34.615 0.00 0.00 0.00 4.79
499 551 7.151999 TGATATATTTTTGTGCAAACTCGGT 57.848 32.000 0.00 0.00 0.00 4.69
500 552 8.533965 CATTGATATATTTTTGTGCAAACTCGG 58.466 33.333 0.00 0.00 0.00 4.63
501 553 9.075519 ACATTGATATATTTTTGTGCAAACTCG 57.924 29.630 0.00 0.00 0.00 4.18
507 559 9.702494 TCACAAACATTGATATATTTTTGTGCA 57.298 25.926 17.72 9.58 46.91 4.57
571 623 9.791801 TGCCATCAAATTAGTAGCATTAGATTA 57.208 29.630 0.00 0.00 0.00 1.75
572 624 8.696043 TGCCATCAAATTAGTAGCATTAGATT 57.304 30.769 0.00 0.00 0.00 2.40
573 625 8.874744 ATGCCATCAAATTAGTAGCATTAGAT 57.125 30.769 0.00 0.00 36.10 1.98
574 626 9.791801 TTATGCCATCAAATTAGTAGCATTAGA 57.208 29.630 0.00 0.00 39.89 2.10
577 629 9.701098 CATTTATGCCATCAAATTAGTAGCATT 57.299 29.630 0.00 0.00 39.89 3.56
578 630 8.863086 ACATTTATGCCATCAAATTAGTAGCAT 58.137 29.630 0.00 0.00 41.89 3.79
579 631 8.236585 ACATTTATGCCATCAAATTAGTAGCA 57.763 30.769 0.00 0.00 0.00 3.49
580 632 8.971321 CAACATTTATGCCATCAAATTAGTAGC 58.029 33.333 0.00 0.00 0.00 3.58
581 633 9.467258 CCAACATTTATGCCATCAAATTAGTAG 57.533 33.333 0.00 0.00 0.00 2.57
582 634 8.976353 ACCAACATTTATGCCATCAAATTAGTA 58.024 29.630 0.00 0.00 0.00 1.82
583 635 7.765360 CACCAACATTTATGCCATCAAATTAGT 59.235 33.333 0.00 0.00 0.00 2.24
584 636 7.765360 ACACCAACATTTATGCCATCAAATTAG 59.235 33.333 0.00 0.00 0.00 1.73
585 637 7.619050 ACACCAACATTTATGCCATCAAATTA 58.381 30.769 0.00 0.00 0.00 1.40
586 638 6.474630 ACACCAACATTTATGCCATCAAATT 58.525 32.000 0.00 0.00 0.00 1.82
587 639 6.052405 ACACCAACATTTATGCCATCAAAT 57.948 33.333 0.00 0.00 0.00 2.32
588 640 5.480642 ACACCAACATTTATGCCATCAAA 57.519 34.783 0.00 0.00 0.00 2.69
589 641 6.788598 ATACACCAACATTTATGCCATCAA 57.211 33.333 0.00 0.00 0.00 2.57
590 642 6.788598 AATACACCAACATTTATGCCATCA 57.211 33.333 0.00 0.00 0.00 3.07
591 643 7.862372 CAGTAATACACCAACATTTATGCCATC 59.138 37.037 0.00 0.00 0.00 3.51
592 644 7.341769 ACAGTAATACACCAACATTTATGCCAT 59.658 33.333 0.00 0.00 0.00 4.40
593 645 6.661377 ACAGTAATACACCAACATTTATGCCA 59.339 34.615 0.00 0.00 0.00 4.92
594 646 7.095695 ACAGTAATACACCAACATTTATGCC 57.904 36.000 0.00 0.00 0.00 4.40
632 684 9.883142 TGTTGGAAAGTCAAAAGAATTTATGTT 57.117 25.926 0.00 0.00 37.28 2.71
633 685 9.883142 TTGTTGGAAAGTCAAAAGAATTTATGT 57.117 25.926 0.00 0.00 37.28 2.29
636 688 9.936759 ACTTTGTTGGAAAGTCAAAAGAATTTA 57.063 25.926 0.00 0.00 34.50 1.40
637 689 8.846943 ACTTTGTTGGAAAGTCAAAAGAATTT 57.153 26.923 0.00 0.00 36.31 1.82
638 690 8.720562 CAACTTTGTTGGAAAGTCAAAAGAATT 58.279 29.630 0.00 0.00 39.36 2.17
639 691 8.093927 TCAACTTTGTTGGAAAGTCAAAAGAAT 58.906 29.630 10.05 0.00 39.36 2.40
640 692 7.437748 TCAACTTTGTTGGAAAGTCAAAAGAA 58.562 30.769 10.05 0.00 39.36 2.52
641 693 6.987386 TCAACTTTGTTGGAAAGTCAAAAGA 58.013 32.000 10.05 0.00 39.36 2.52
642 694 7.650834 TTCAACTTTGTTGGAAAGTCAAAAG 57.349 32.000 10.05 0.00 39.36 2.27
643 695 8.082334 CTTTCAACTTTGTTGGAAAGTCAAAA 57.918 30.769 10.05 0.00 40.64 2.44
644 696 7.650834 CTTTCAACTTTGTTGGAAAGTCAAA 57.349 32.000 10.05 0.00 40.64 2.69
661 713 9.543018 CCGTTCTTTGAAGATTATACTTTCAAC 57.457 33.333 5.44 0.00 34.49 3.18
662 714 8.234546 GCCGTTCTTTGAAGATTATACTTTCAA 58.765 33.333 0.00 0.00 34.49 2.69
663 715 7.412563 CGCCGTTCTTTGAAGATTATACTTTCA 60.413 37.037 0.00 0.00 34.49 2.69
664 716 6.900299 CGCCGTTCTTTGAAGATTATACTTTC 59.100 38.462 0.00 0.00 34.49 2.62
665 717 6.592607 TCGCCGTTCTTTGAAGATTATACTTT 59.407 34.615 0.00 0.00 34.49 2.66
666 718 6.035758 GTCGCCGTTCTTTGAAGATTATACTT 59.964 38.462 0.00 0.00 34.49 2.24
667 719 5.519206 GTCGCCGTTCTTTGAAGATTATACT 59.481 40.000 0.00 0.00 34.49 2.12
668 720 5.553952 CGTCGCCGTTCTTTGAAGATTATAC 60.554 44.000 0.00 0.00 34.49 1.47
669 721 4.501559 CGTCGCCGTTCTTTGAAGATTATA 59.498 41.667 0.00 0.00 34.49 0.98
670 722 3.306166 CGTCGCCGTTCTTTGAAGATTAT 59.694 43.478 0.00 0.00 34.49 1.28
671 723 2.664568 CGTCGCCGTTCTTTGAAGATTA 59.335 45.455 0.00 0.00 34.49 1.75
672 724 1.459592 CGTCGCCGTTCTTTGAAGATT 59.540 47.619 0.00 0.00 34.49 2.40
673 725 1.068474 CGTCGCCGTTCTTTGAAGAT 58.932 50.000 0.00 0.00 34.49 2.40
674 726 0.942410 CCGTCGCCGTTCTTTGAAGA 60.942 55.000 0.00 0.00 0.00 2.87
675 727 0.942410 TCCGTCGCCGTTCTTTGAAG 60.942 55.000 0.00 0.00 0.00 3.02
676 728 0.530211 TTCCGTCGCCGTTCTTTGAA 60.530 50.000 0.00 0.00 0.00 2.69
677 729 0.942410 CTTCCGTCGCCGTTCTTTGA 60.942 55.000 0.00 0.00 0.00 2.69
678 730 1.491563 CTTCCGTCGCCGTTCTTTG 59.508 57.895 0.00 0.00 0.00 2.77
679 731 1.666872 CCTTCCGTCGCCGTTCTTT 60.667 57.895 0.00 0.00 0.00 2.52
680 732 2.048503 CCTTCCGTCGCCGTTCTT 60.049 61.111 0.00 0.00 0.00 2.52
681 733 2.987547 TCCTTCCGTCGCCGTTCT 60.988 61.111 0.00 0.00 0.00 3.01
682 734 1.926511 TACTCCTTCCGTCGCCGTTC 61.927 60.000 0.00 0.00 0.00 3.95
683 735 1.318158 ATACTCCTTCCGTCGCCGTT 61.318 55.000 0.00 0.00 0.00 4.44
684 736 0.464373 TATACTCCTTCCGTCGCCGT 60.464 55.000 0.00 0.00 0.00 5.68
685 737 0.879765 ATATACTCCTTCCGTCGCCG 59.120 55.000 0.00 0.00 0.00 6.46
686 738 3.005578 AGAAATATACTCCTTCCGTCGCC 59.994 47.826 0.00 0.00 0.00 5.54
687 739 4.240175 AGAAATATACTCCTTCCGTCGC 57.760 45.455 0.00 0.00 0.00 5.19
688 740 4.910456 CGAAGAAATATACTCCTTCCGTCG 59.090 45.833 0.00 0.00 33.40 5.12
689 741 5.221130 CCGAAGAAATATACTCCTTCCGTC 58.779 45.833 0.00 0.00 33.40 4.79
690 742 4.501058 GCCGAAGAAATATACTCCTTCCGT 60.501 45.833 0.00 0.00 33.40 4.69
691 743 3.988517 GCCGAAGAAATATACTCCTTCCG 59.011 47.826 0.00 0.00 33.40 4.30
692 744 3.988517 CGCCGAAGAAATATACTCCTTCC 59.011 47.826 0.00 0.00 33.40 3.46
693 745 4.618965 ACGCCGAAGAAATATACTCCTTC 58.381 43.478 0.00 0.00 33.58 3.46
694 746 4.667519 ACGCCGAAGAAATATACTCCTT 57.332 40.909 0.00 0.00 0.00 3.36
695 747 5.391736 CGATACGCCGAAGAAATATACTCCT 60.392 44.000 0.00 0.00 0.00 3.69
696 748 4.792189 CGATACGCCGAAGAAATATACTCC 59.208 45.833 0.00 0.00 0.00 3.85
697 749 4.792189 CCGATACGCCGAAGAAATATACTC 59.208 45.833 0.00 0.00 0.00 2.59
698 750 4.730657 CCGATACGCCGAAGAAATATACT 58.269 43.478 0.00 0.00 0.00 2.12
699 751 3.302699 GCCGATACGCCGAAGAAATATAC 59.697 47.826 0.00 0.00 0.00 1.47
700 752 3.504863 GCCGATACGCCGAAGAAATATA 58.495 45.455 0.00 0.00 0.00 0.86
701 753 2.334838 GCCGATACGCCGAAGAAATAT 58.665 47.619 0.00 0.00 0.00 1.28
702 754 1.603678 GGCCGATACGCCGAAGAAATA 60.604 52.381 0.00 0.00 39.64 1.40
703 755 0.878961 GGCCGATACGCCGAAGAAAT 60.879 55.000 0.00 0.00 39.64 2.17
704 756 1.519898 GGCCGATACGCCGAAGAAA 60.520 57.895 0.00 0.00 39.64 2.52
705 757 2.105528 GGCCGATACGCCGAAGAA 59.894 61.111 0.00 0.00 39.64 2.52
718 770 2.859273 ATTCTTCTCGCACCTGGCCG 62.859 60.000 0.00 0.00 40.31 6.13
754 809 2.749621 GGAATGATCACAAACCGAAGCT 59.250 45.455 0.00 0.00 0.00 3.74
760 815 4.037923 ACACTGTTGGAATGATCACAAACC 59.962 41.667 0.00 0.00 0.00 3.27
803 858 0.890996 GTGGTTGCAGCTTGTAGCCT 60.891 55.000 0.00 0.00 43.77 4.58
807 862 1.060729 TAGGGTGGTTGCAGCTTGTA 58.939 50.000 0.00 0.00 0.00 2.41
808 863 0.184933 TTAGGGTGGTTGCAGCTTGT 59.815 50.000 0.00 0.00 0.00 3.16
822 877 4.898829 TGCATTTCGAACATGATTAGGG 57.101 40.909 18.43 0.00 0.00 3.53
900 959 3.274067 GGAGACGCGGGCAAATTT 58.726 55.556 12.47 0.00 0.00 1.82
1118 1177 1.068472 GGCTATATCCCTCGTGTCGTG 60.068 57.143 0.00 0.00 0.00 4.35
1171 1230 2.575532 CTGTAGCTCTCTCCTCTCCTG 58.424 57.143 0.00 0.00 0.00 3.86
1178 1237 2.504367 CTCTAGGCTGTAGCTCTCTCC 58.496 57.143 0.00 0.00 41.70 3.71
1241 1301 3.681835 GACAGCCTCCACGTCGGT 61.682 66.667 0.00 0.00 35.57 4.69
1279 1339 1.048160 TGGCGATACCTCTGGCATGA 61.048 55.000 0.00 0.00 40.22 3.07
1316 1376 4.572389 CCATCAAGGAATCAAGGTAGAACG 59.428 45.833 0.00 0.00 41.22 3.95
1356 1416 5.052567 CGTCAGAAGTTGTAAATATCGACCG 60.053 44.000 0.00 0.00 0.00 4.79
1933 1999 1.162181 ATGCATGATCGTGGAAGGCG 61.162 55.000 13.51 0.00 0.00 5.52
1935 2001 1.671979 ACATGCATGATCGTGGAAGG 58.328 50.000 32.75 10.93 0.00 3.46
1936 2002 3.770263 AAACATGCATGATCGTGGAAG 57.230 42.857 32.75 11.49 0.00 3.46
1937 2003 4.094739 CACTAAACATGCATGATCGTGGAA 59.905 41.667 32.75 8.09 0.00 3.53
1938 2004 3.622612 CACTAAACATGCATGATCGTGGA 59.377 43.478 32.75 14.34 0.00 4.02
1939 2005 3.622612 TCACTAAACATGCATGATCGTGG 59.377 43.478 32.75 17.01 0.00 4.94
1940 2006 4.863152 TCACTAAACATGCATGATCGTG 57.137 40.909 32.75 26.38 0.00 4.35
1941 2007 5.220912 CCAATCACTAAACATGCATGATCGT 60.221 40.000 32.75 17.86 0.00 3.73
1946 2014 4.112716 TGCCAATCACTAAACATGCATG 57.887 40.909 25.09 25.09 0.00 4.06
1956 2024 1.468127 CAACGTGCATGCCAATCACTA 59.532 47.619 16.68 0.00 0.00 2.74
1982 2050 1.588674 CACAAGGGTAAACAGACGCA 58.411 50.000 0.00 0.00 34.83 5.24
1983 2051 0.237498 GCACAAGGGTAAACAGACGC 59.763 55.000 0.00 0.00 0.00 5.19
1984 2052 1.531149 CAGCACAAGGGTAAACAGACG 59.469 52.381 0.00 0.00 0.00 4.18
1985 2053 1.880027 CCAGCACAAGGGTAAACAGAC 59.120 52.381 0.00 0.00 0.00 3.51
1986 2054 1.493022 ACCAGCACAAGGGTAAACAGA 59.507 47.619 0.00 0.00 35.09 3.41
1987 2055 1.608590 CACCAGCACAAGGGTAAACAG 59.391 52.381 0.00 0.00 35.09 3.16
1988 2056 1.686355 CACCAGCACAAGGGTAAACA 58.314 50.000 0.00 0.00 35.09 2.83
1989 2057 0.313987 GCACCAGCACAAGGGTAAAC 59.686 55.000 0.00 0.00 41.58 2.01
1990 2058 0.825840 GGCACCAGCACAAGGGTAAA 60.826 55.000 0.00 0.00 44.61 2.01
1991 2059 1.228429 GGCACCAGCACAAGGGTAA 60.228 57.895 0.00 0.00 44.61 2.85
1992 2060 1.788518 ATGGCACCAGCACAAGGGTA 61.789 55.000 0.00 0.00 44.61 3.69
2005 2388 1.180029 ATCAGCAACTCCAATGGCAC 58.820 50.000 0.00 0.00 0.00 5.01
2225 2641 2.611473 CCCAGCCTGCGTATCTAATCAG 60.611 54.545 0.00 0.00 0.00 2.90
2226 2642 1.344438 CCCAGCCTGCGTATCTAATCA 59.656 52.381 0.00 0.00 0.00 2.57
2228 2644 1.717032 TCCCAGCCTGCGTATCTAAT 58.283 50.000 0.00 0.00 0.00 1.73
2234 2701 3.138625 GCTATCCCAGCCTGCGTA 58.861 61.111 0.00 0.00 45.23 4.42
2261 3948 2.967397 CAGGTGGCCACAATGCTG 59.033 61.111 35.78 27.56 0.00 4.41
2471 4408 2.329690 CGTGATCGAGCTCGGGAG 59.670 66.667 33.98 17.72 40.29 4.30
2611 4561 4.796495 GTGCCCATCACCCGGGTC 62.796 72.222 27.51 12.61 46.40 4.46
3048 5016 2.202878 CGACATGTACCCTGGCCG 60.203 66.667 0.00 0.00 0.00 6.13
3095 5072 4.767255 GGAGACGGGTGCTGGCTG 62.767 72.222 0.00 0.00 0.00 4.85
3097 5074 4.459089 GAGGAGACGGGTGCTGGC 62.459 72.222 0.00 0.00 0.00 4.85
3142 5119 0.458889 CATGCAAATCCAAGTGCCGG 60.459 55.000 0.00 0.00 40.14 6.13
3160 5137 1.211703 ACATCATTATCACGGGGCACA 59.788 47.619 0.00 0.00 0.00 4.57
3239 5224 3.694734 GATACGAACATGCCAACCAATG 58.305 45.455 0.00 0.00 0.00 2.82
3242 5227 1.066787 TCGATACGAACATGCCAACCA 60.067 47.619 0.00 0.00 31.06 3.67
3262 5247 1.792949 GACGATGTGCGACTTGAGTTT 59.207 47.619 0.00 0.00 44.57 2.66
3270 5255 0.584396 TTTGGTTGACGATGTGCGAC 59.416 50.000 0.00 0.00 44.57 5.19
3305 5291 7.334421 GTGATCTCTAACATTTGAACTGGCTTA 59.666 37.037 0.00 0.00 0.00 3.09
3320 5306 2.784380 GCGACATCGTGTGATCTCTAAC 59.216 50.000 2.85 0.00 42.22 2.34
3323 5309 1.098869 AGCGACATCGTGTGATCTCT 58.901 50.000 2.85 0.00 42.22 3.10
3324 5310 1.195347 CAGCGACATCGTGTGATCTC 58.805 55.000 2.85 0.00 42.22 2.75
3325 5311 0.811281 TCAGCGACATCGTGTGATCT 59.189 50.000 2.85 0.00 42.22 2.75
3326 5312 1.585668 CTTCAGCGACATCGTGTGATC 59.414 52.381 2.85 0.00 42.22 2.92
3327 5313 1.633561 CTTCAGCGACATCGTGTGAT 58.366 50.000 2.85 0.00 42.22 3.06
3328 5314 0.388520 CCTTCAGCGACATCGTGTGA 60.389 55.000 2.85 4.02 42.22 3.58
3329 5315 0.388520 TCCTTCAGCGACATCGTGTG 60.389 55.000 2.85 1.68 42.22 3.82
3330 5316 0.109086 CTCCTTCAGCGACATCGTGT 60.109 55.000 2.85 0.00 42.22 4.49
3331 5317 0.109086 ACTCCTTCAGCGACATCGTG 60.109 55.000 2.85 0.93 42.22 4.35
3332 5318 0.171455 GACTCCTTCAGCGACATCGT 59.829 55.000 2.85 0.00 42.22 3.73
3333 5319 0.526524 GGACTCCTTCAGCGACATCG 60.527 60.000 0.00 0.00 43.27 3.84
3334 5320 0.820871 AGGACTCCTTCAGCGACATC 59.179 55.000 0.00 0.00 0.00 3.06
3335 5321 0.534412 CAGGACTCCTTCAGCGACAT 59.466 55.000 0.00 0.00 0.00 3.06
3336 5322 1.536073 CCAGGACTCCTTCAGCGACA 61.536 60.000 0.00 0.00 0.00 4.35
3337 5323 1.216710 CCAGGACTCCTTCAGCGAC 59.783 63.158 0.00 0.00 0.00 5.19
3338 5324 1.076727 TCCAGGACTCCTTCAGCGA 59.923 57.895 0.00 0.00 0.00 4.93
3339 5325 1.216710 GTCCAGGACTCCTTCAGCG 59.783 63.158 12.94 0.00 0.00 5.18
3340 5326 1.853963 TAGTCCAGGACTCCTTCAGC 58.146 55.000 26.42 0.00 42.40 4.26
3345 5331 0.340208 CCCCTTAGTCCAGGACTCCT 59.660 60.000 26.42 5.13 42.40 3.69
3424 5411 0.743097 ACACGGGTATAGTCTTCGGC 59.257 55.000 0.00 0.00 0.00 5.54
3463 5450 0.460284 CGATAGCTTGCCTCCAACGT 60.460 55.000 0.00 0.00 0.00 3.99
3467 5454 2.067365 TAGTCGATAGCTTGCCTCCA 57.933 50.000 0.00 0.00 0.00 3.86
3504 5496 3.381335 AGGGTTACATGAGGTCGGTTAT 58.619 45.455 0.00 0.00 0.00 1.89
3611 5603 2.728922 GAGATCGTAGTGGCTAAACCG 58.271 52.381 0.00 0.00 43.94 4.44
3697 5689 0.032515 TCGGGGCCTCTGTATGAAGA 60.033 55.000 0.00 0.00 0.00 2.87
3700 5692 1.335132 GGTTCGGGGCCTCTGTATGA 61.335 60.000 0.00 0.00 0.00 2.15
3705 5697 4.101448 CCAGGTTCGGGGCCTCTG 62.101 72.222 0.00 0.00 33.31 3.35
3737 5729 4.959349 TGGTAACAGGAGACGGGT 57.041 55.556 0.00 0.00 46.17 5.28
3778 5770 1.074699 GGATCTCGGGTAGGGGGTT 60.075 63.158 0.00 0.00 0.00 4.11
4109 6102 0.465287 GGTTTAAGCCCGACCCGATA 59.535 55.000 0.00 0.00 0.00 2.92
4173 6166 0.750182 GCTCTGCTCCTCGACTACCT 60.750 60.000 0.00 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.