Multiple sequence alignment - TraesCS6D01G235100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G235100 chr6D 100.000 2552 0 0 1 2552 329897374 329894823 0.000000e+00 4713.0
1 TraesCS6D01G235100 chr7D 93.935 1962 91 11 613 2550 623570818 623572775 0.000000e+00 2939.0
2 TraesCS6D01G235100 chr7D 91.160 1742 96 28 599 2308 565949630 565947915 0.000000e+00 2311.0
3 TraesCS6D01G235100 chr1D 93.411 1973 83 18 614 2550 347252964 347251003 0.000000e+00 2880.0
4 TraesCS6D01G235100 chr1D 97.222 180 5 0 1 180 216126403 216126224 3.190000e-79 305.0
5 TraesCS6D01G235100 chr1D 96.089 179 6 1 1 179 112766562 112766385 8.930000e-75 291.0
6 TraesCS6D01G235100 chr7B 92.963 1961 106 22 606 2550 648212418 648214362 0.000000e+00 2828.0
7 TraesCS6D01G235100 chr7B 96.089 179 7 0 1 179 653869322 653869144 2.480000e-75 292.0
8 TraesCS6D01G235100 chr3D 93.316 1870 81 20 614 2461 447973573 447971726 0.000000e+00 2721.0
9 TraesCS6D01G235100 chr3D 94.135 1688 84 12 871 2550 370069937 370071617 0.000000e+00 2555.0
10 TraesCS6D01G235100 chr5A 92.540 1823 113 15 614 2425 28960259 28958449 0.000000e+00 2591.0
11 TraesCS6D01G235100 chr2B 92.110 1825 116 17 614 2422 485690852 485692664 0.000000e+00 2547.0
12 TraesCS6D01G235100 chr2B 96.045 177 7 0 1 177 393192406 393192582 3.210000e-74 289.0
13 TraesCS6D01G235100 chrUn 92.797 1777 98 21 606 2367 355013870 355015631 0.000000e+00 2545.0
14 TraesCS6D01G235100 chr4B 91.740 1828 116 20 616 2422 251255863 251257676 0.000000e+00 2507.0
15 TraesCS6D01G235100 chr2D 93.388 1709 88 11 608 2309 16065480 16067170 0.000000e+00 2507.0
16 TraesCS6D01G235100 chr2D 97.753 178 4 0 1 178 8394875 8395052 8.870000e-80 307.0
17 TraesCS6D01G235100 chr2A 91.436 362 20 5 614 971 233255261 233255615 1.060000e-133 486.0
18 TraesCS6D01G235100 chr2A 97.175 177 5 0 1 177 273221867 273222043 1.480000e-77 300.0
19 TraesCS6D01G235100 chr6A 89.894 376 24 8 600 971 57901148 57901513 2.970000e-129 472.0
20 TraesCS6D01G235100 chr5D 100.000 179 0 0 1 179 416002951 416003129 5.260000e-87 331.0
21 TraesCS6D01G235100 chr4D 96.648 179 6 0 1 179 374822538 374822360 5.340000e-77 298.0
22 TraesCS6D01G235100 chr1B 95.556 180 8 0 1 180 585796314 585796135 3.210000e-74 289.0
23 TraesCS6D01G235100 chr6B 89.952 209 18 3 409 615 490546559 490546766 1.510000e-67 267.0
24 TraesCS6D01G235100 chr6B 84.337 83 1 5 177 258 490506111 490506182 1.270000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G235100 chr6D 329894823 329897374 2551 True 4713 4713 100.000 1 2552 1 chr6D.!!$R1 2551
1 TraesCS6D01G235100 chr7D 623570818 623572775 1957 False 2939 2939 93.935 613 2550 1 chr7D.!!$F1 1937
2 TraesCS6D01G235100 chr7D 565947915 565949630 1715 True 2311 2311 91.160 599 2308 1 chr7D.!!$R1 1709
3 TraesCS6D01G235100 chr1D 347251003 347252964 1961 True 2880 2880 93.411 614 2550 1 chr1D.!!$R3 1936
4 TraesCS6D01G235100 chr7B 648212418 648214362 1944 False 2828 2828 92.963 606 2550 1 chr7B.!!$F1 1944
5 TraesCS6D01G235100 chr3D 447971726 447973573 1847 True 2721 2721 93.316 614 2461 1 chr3D.!!$R1 1847
6 TraesCS6D01G235100 chr3D 370069937 370071617 1680 False 2555 2555 94.135 871 2550 1 chr3D.!!$F1 1679
7 TraesCS6D01G235100 chr5A 28958449 28960259 1810 True 2591 2591 92.540 614 2425 1 chr5A.!!$R1 1811
8 TraesCS6D01G235100 chr2B 485690852 485692664 1812 False 2547 2547 92.110 614 2422 1 chr2B.!!$F2 1808
9 TraesCS6D01G235100 chrUn 355013870 355015631 1761 False 2545 2545 92.797 606 2367 1 chrUn.!!$F1 1761
10 TraesCS6D01G235100 chr4B 251255863 251257676 1813 False 2507 2507 91.740 616 2422 1 chr4B.!!$F1 1806
11 TraesCS6D01G235100 chr2D 16065480 16067170 1690 False 2507 2507 93.388 608 2309 1 chr2D.!!$F2 1701

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
56 57 0.037975 ATTTTCACGCCTCGTACCGT 60.038 50.0 0.0 0.0 38.32 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1782 1856 1.683917 CTAGTCGGCACTTGGCTCTAT 59.316 52.381 0.9 0.0 44.01 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.842602 CTTTTCGCGAGCTCACGA 58.157 55.556 22.14 22.14 36.32 4.35
18 19 1.698898 CTTTTCGCGAGCTCACGAG 59.301 57.895 24.22 11.51 39.81 4.18
27 28 3.782244 GCTCACGAGCGTGGCTTG 61.782 66.667 21.14 11.11 45.29 4.01
28 29 3.782244 CTCACGAGCGTGGCTTGC 61.782 66.667 21.14 0.00 43.36 4.01
29 30 4.299547 TCACGAGCGTGGCTTGCT 62.300 61.111 21.14 3.72 43.36 3.91
34 35 4.609018 AGCGTGGCTTGCTCGTGT 62.609 61.111 0.00 0.27 38.62 4.49
35 36 2.736995 GCGTGGCTTGCTCGTGTA 60.737 61.111 10.63 0.00 0.00 2.90
36 37 2.100631 GCGTGGCTTGCTCGTGTAT 61.101 57.895 10.63 0.00 0.00 2.29
37 38 0.804544 GCGTGGCTTGCTCGTGTATA 60.805 55.000 10.63 0.00 0.00 1.47
38 39 1.852942 CGTGGCTTGCTCGTGTATAT 58.147 50.000 0.00 0.00 0.00 0.86
39 40 2.201732 CGTGGCTTGCTCGTGTATATT 58.798 47.619 0.00 0.00 0.00 1.28
40 41 2.607635 CGTGGCTTGCTCGTGTATATTT 59.392 45.455 0.00 0.00 0.00 1.40
41 42 3.063452 CGTGGCTTGCTCGTGTATATTTT 59.937 43.478 0.00 0.00 0.00 1.82
42 43 4.588278 GTGGCTTGCTCGTGTATATTTTC 58.412 43.478 0.00 0.00 0.00 2.29
43 44 4.094294 GTGGCTTGCTCGTGTATATTTTCA 59.906 41.667 0.00 0.00 0.00 2.69
44 45 4.094294 TGGCTTGCTCGTGTATATTTTCAC 59.906 41.667 0.00 0.00 0.00 3.18
53 54 5.306929 GTGTATATTTTCACGCCTCGTAC 57.693 43.478 0.00 0.00 38.32 3.67
54 55 4.207841 GTGTATATTTTCACGCCTCGTACC 59.792 45.833 0.00 0.00 38.32 3.34
55 56 1.912001 TATTTTCACGCCTCGTACCG 58.088 50.000 0.00 0.00 38.32 4.02
56 57 0.037975 ATTTTCACGCCTCGTACCGT 60.038 50.000 0.00 0.00 38.32 4.83
57 58 0.664166 TTTTCACGCCTCGTACCGTC 60.664 55.000 0.00 0.00 38.32 4.79
58 59 2.784957 TTTCACGCCTCGTACCGTCG 62.785 60.000 0.00 0.00 38.32 5.12
59 60 4.093952 CACGCCTCGTACCGTCGT 62.094 66.667 0.00 0.00 38.32 4.34
60 61 4.093952 ACGCCTCGTACCGTCGTG 62.094 66.667 0.00 0.00 38.73 4.35
61 62 4.824166 CGCCTCGTACCGTCGTGG 62.824 72.222 8.05 8.05 44.11 4.94
63 64 4.487412 CCTCGTACCGTCGTGGCC 62.487 72.222 0.00 0.00 43.94 5.36
64 65 3.437795 CTCGTACCGTCGTGGCCT 61.438 66.667 3.32 0.00 43.94 5.19
65 66 3.678717 CTCGTACCGTCGTGGCCTG 62.679 68.421 3.32 0.00 43.94 4.85
66 67 4.789075 CGTACCGTCGTGGCCTGG 62.789 72.222 3.32 0.19 43.94 4.45
67 68 4.446413 GTACCGTCGTGGCCTGGG 62.446 72.222 3.32 0.00 43.94 4.45
77 78 4.740822 GGCCTGGGCGTGGATGTT 62.741 66.667 3.84 0.00 43.06 2.71
78 79 2.676471 GCCTGGGCGTGGATGTTT 60.676 61.111 0.00 0.00 0.00 2.83
79 80 1.377987 GCCTGGGCGTGGATGTTTA 60.378 57.895 0.00 0.00 0.00 2.01
80 81 1.654023 GCCTGGGCGTGGATGTTTAC 61.654 60.000 0.00 0.00 0.00 2.01
81 82 0.322098 CCTGGGCGTGGATGTTTACA 60.322 55.000 0.00 0.00 0.00 2.41
82 83 0.802494 CTGGGCGTGGATGTTTACAC 59.198 55.000 0.00 0.00 0.00 2.90
87 88 3.243128 GTGGATGTTTACACGCCCT 57.757 52.632 0.00 0.00 0.00 5.19
88 89 1.530323 GTGGATGTTTACACGCCCTT 58.470 50.000 0.00 0.00 0.00 3.95
89 90 1.883926 GTGGATGTTTACACGCCCTTT 59.116 47.619 0.00 0.00 0.00 3.11
90 91 2.295070 GTGGATGTTTACACGCCCTTTT 59.705 45.455 0.00 0.00 0.00 2.27
91 92 3.502979 GTGGATGTTTACACGCCCTTTTA 59.497 43.478 0.00 0.00 0.00 1.52
92 93 3.502979 TGGATGTTTACACGCCCTTTTAC 59.497 43.478 0.00 0.00 0.00 2.01
93 94 3.502979 GGATGTTTACACGCCCTTTTACA 59.497 43.478 0.00 0.00 0.00 2.41
94 95 3.967203 TGTTTACACGCCCTTTTACAC 57.033 42.857 0.00 0.00 0.00 2.90
95 96 2.287373 TGTTTACACGCCCTTTTACACG 59.713 45.455 0.00 0.00 0.00 4.49
96 97 2.522836 TTACACGCCCTTTTACACGA 57.477 45.000 0.00 0.00 0.00 4.35
97 98 2.068837 TACACGCCCTTTTACACGAG 57.931 50.000 0.00 0.00 0.00 4.18
98 99 0.105408 ACACGCCCTTTTACACGAGT 59.895 50.000 0.00 0.00 0.00 4.18
99 100 0.788391 CACGCCCTTTTACACGAGTC 59.212 55.000 0.00 0.00 0.00 3.36
100 101 0.665369 ACGCCCTTTTACACGAGTCG 60.665 55.000 11.85 11.85 0.00 4.18
101 102 1.785951 GCCCTTTTACACGAGTCGC 59.214 57.895 13.59 0.00 0.00 5.19
102 103 0.669625 GCCCTTTTACACGAGTCGCT 60.670 55.000 13.59 0.00 0.00 4.93
103 104 1.068474 CCCTTTTACACGAGTCGCTG 58.932 55.000 13.59 12.50 0.00 5.18
104 105 1.068474 CCTTTTACACGAGTCGCTGG 58.932 55.000 13.59 5.13 0.00 4.85
105 106 1.068474 CTTTTACACGAGTCGCTGGG 58.932 55.000 13.59 2.40 0.00 4.45
106 107 0.675083 TTTTACACGAGTCGCTGGGA 59.325 50.000 13.59 0.00 0.00 4.37
107 108 0.242825 TTTACACGAGTCGCTGGGAG 59.757 55.000 13.59 0.00 0.00 4.30
108 109 2.209064 TTACACGAGTCGCTGGGAGC 62.209 60.000 13.59 0.00 38.02 4.70
109 110 4.056125 CACGAGTCGCTGGGAGCA 62.056 66.667 13.59 0.00 42.58 4.26
110 111 3.753434 ACGAGTCGCTGGGAGCAG 61.753 66.667 13.59 0.00 42.58 4.24
111 112 3.753434 CGAGTCGCTGGGAGCAGT 61.753 66.667 0.00 0.00 42.58 4.40
112 113 2.659610 GAGTCGCTGGGAGCAGTT 59.340 61.111 0.00 0.00 42.58 3.16
113 114 1.004440 GAGTCGCTGGGAGCAGTTT 60.004 57.895 0.00 0.00 42.58 2.66
114 115 0.603975 GAGTCGCTGGGAGCAGTTTT 60.604 55.000 0.00 0.00 42.58 2.43
115 116 0.179018 AGTCGCTGGGAGCAGTTTTT 60.179 50.000 0.00 0.00 42.58 1.94
135 136 6.838198 TTTTTAGCTCGCATCGTGTATATT 57.162 33.333 0.00 0.00 0.00 1.28
136 137 6.838198 TTTTAGCTCGCATCGTGTATATTT 57.162 33.333 0.00 0.00 0.00 1.40
137 138 5.822584 TTAGCTCGCATCGTGTATATTTG 57.177 39.130 0.00 0.00 0.00 2.32
138 139 2.476619 AGCTCGCATCGTGTATATTTGC 59.523 45.455 0.00 0.00 0.00 3.68
139 140 2.476619 GCTCGCATCGTGTATATTTGCT 59.523 45.455 0.00 0.00 0.00 3.91
140 141 3.673338 GCTCGCATCGTGTATATTTGCTA 59.327 43.478 0.00 0.00 0.00 3.49
141 142 4.327357 GCTCGCATCGTGTATATTTGCTAT 59.673 41.667 0.00 0.00 0.00 2.97
142 143 5.515270 GCTCGCATCGTGTATATTTGCTATA 59.485 40.000 0.00 0.00 0.00 1.31
143 144 6.506513 GCTCGCATCGTGTATATTTGCTATAC 60.507 42.308 0.00 0.00 41.74 1.47
144 145 6.383415 TCGCATCGTGTATATTTGCTATACA 58.617 36.000 1.28 1.28 46.38 2.29
158 159 8.932945 ATTTGCTATACACGTCCATATAGATG 57.067 34.615 16.74 0.00 34.55 2.90
159 160 7.696992 TTGCTATACACGTCCATATAGATGA 57.303 36.000 16.74 4.50 34.55 2.92
160 161 7.881775 TGCTATACACGTCCATATAGATGAT 57.118 36.000 16.74 0.00 34.55 2.45
161 162 7.931275 TGCTATACACGTCCATATAGATGATC 58.069 38.462 16.74 0.00 34.55 2.92
162 163 7.013369 TGCTATACACGTCCATATAGATGATCC 59.987 40.741 16.74 4.43 34.55 3.36
163 164 7.013369 GCTATACACGTCCATATAGATGATCCA 59.987 40.741 16.74 0.00 34.55 3.41
164 165 5.392767 ACACGTCCATATAGATGATCCAC 57.607 43.478 0.00 0.00 34.73 4.02
165 166 5.080337 ACACGTCCATATAGATGATCCACT 58.920 41.667 0.00 0.00 34.73 4.00
166 167 6.246163 ACACGTCCATATAGATGATCCACTA 58.754 40.000 0.00 0.00 34.73 2.74
167 168 6.375736 ACACGTCCATATAGATGATCCACTAG 59.624 42.308 0.00 0.00 34.73 2.57
168 169 6.599638 CACGTCCATATAGATGATCCACTAGA 59.400 42.308 0.00 0.00 34.73 2.43
169 170 6.826231 ACGTCCATATAGATGATCCACTAGAG 59.174 42.308 0.00 0.00 34.73 2.43
170 171 7.051000 CGTCCATATAGATGATCCACTAGAGA 58.949 42.308 0.00 0.00 34.73 3.10
171 172 7.719193 CGTCCATATAGATGATCCACTAGAGAT 59.281 40.741 0.00 0.00 34.73 2.75
172 173 8.849168 GTCCATATAGATGATCCACTAGAGATG 58.151 40.741 0.00 0.93 34.73 2.90
173 174 7.505248 TCCATATAGATGATCCACTAGAGATGC 59.495 40.741 0.00 0.00 34.73 3.91
174 175 7.506599 CCATATAGATGATCCACTAGAGATGCT 59.493 40.741 0.00 0.00 34.73 3.79
175 176 8.570488 CATATAGATGATCCACTAGAGATGCTC 58.430 40.741 0.00 0.00 34.73 4.26
176 177 5.001833 AGATGATCCACTAGAGATGCTCT 57.998 43.478 0.00 2.22 43.83 4.09
177 178 5.396485 AGATGATCCACTAGAGATGCTCTT 58.604 41.667 1.88 0.00 41.50 2.85
178 179 6.551085 AGATGATCCACTAGAGATGCTCTTA 58.449 40.000 1.88 0.00 41.50 2.10
179 180 6.434028 AGATGATCCACTAGAGATGCTCTTAC 59.566 42.308 1.88 0.00 41.50 2.34
180 181 4.830046 TGATCCACTAGAGATGCTCTTACC 59.170 45.833 1.88 0.00 41.50 2.85
181 182 3.215151 TCCACTAGAGATGCTCTTACCG 58.785 50.000 1.88 0.00 41.50 4.02
182 183 3.118000 TCCACTAGAGATGCTCTTACCGA 60.118 47.826 1.88 0.00 41.50 4.69
183 184 3.003897 CCACTAGAGATGCTCTTACCGAC 59.996 52.174 1.88 0.00 41.50 4.79
184 185 3.003897 CACTAGAGATGCTCTTACCGACC 59.996 52.174 1.88 0.00 41.50 4.79
185 186 2.145397 AGAGATGCTCTTACCGACCA 57.855 50.000 0.00 0.00 37.60 4.02
186 187 2.457598 AGAGATGCTCTTACCGACCAA 58.542 47.619 0.00 0.00 37.60 3.67
187 188 2.832129 AGAGATGCTCTTACCGACCAAA 59.168 45.455 0.00 0.00 37.60 3.28
188 189 3.452627 AGAGATGCTCTTACCGACCAAAT 59.547 43.478 0.00 0.00 37.60 2.32
189 190 3.798202 AGATGCTCTTACCGACCAAATC 58.202 45.455 0.00 0.00 0.00 2.17
190 191 7.678018 AGAGATGCTCTTACCGACCAAATCG 62.678 48.000 0.00 0.00 43.64 3.34
215 216 7.672983 TTCAAGAGAACATCACAAATACTCC 57.327 36.000 0.00 0.00 0.00 3.85
216 217 5.869344 TCAAGAGAACATCACAAATACTCCG 59.131 40.000 0.00 0.00 0.00 4.63
217 218 5.661056 AGAGAACATCACAAATACTCCGA 57.339 39.130 0.00 0.00 0.00 4.55
218 219 5.655488 AGAGAACATCACAAATACTCCGAG 58.345 41.667 0.00 0.00 0.00 4.63
219 220 5.419155 AGAGAACATCACAAATACTCCGAGA 59.581 40.000 1.33 0.00 0.00 4.04
220 221 5.655488 AGAACATCACAAATACTCCGAGAG 58.345 41.667 1.33 0.00 35.52 3.20
221 222 3.786635 ACATCACAAATACTCCGAGAGC 58.213 45.455 1.33 0.00 32.04 4.09
222 223 3.449018 ACATCACAAATACTCCGAGAGCT 59.551 43.478 1.33 0.00 32.04 4.09
223 224 4.081420 ACATCACAAATACTCCGAGAGCTT 60.081 41.667 1.33 0.00 32.04 3.74
224 225 4.111375 TCACAAATACTCCGAGAGCTTC 57.889 45.455 1.33 0.00 32.04 3.86
232 233 3.191836 CGAGAGCTTCGCTGGAGA 58.808 61.111 5.58 0.00 43.22 3.71
233 234 1.508545 CGAGAGCTTCGCTGGAGAA 59.491 57.895 5.58 0.00 43.22 2.87
234 235 0.109086 CGAGAGCTTCGCTGGAGAAA 60.109 55.000 5.58 0.00 43.22 2.52
235 236 1.355005 GAGAGCTTCGCTGGAGAAAC 58.645 55.000 0.00 0.00 39.88 2.78
236 237 0.681733 AGAGCTTCGCTGGAGAAACA 59.318 50.000 0.00 0.00 39.88 2.83
237 238 0.793250 GAGCTTCGCTGGAGAAACAC 59.207 55.000 0.00 0.00 39.88 3.32
238 239 0.394565 AGCTTCGCTGGAGAAACACT 59.605 50.000 0.00 0.00 37.57 3.55
239 240 1.618837 AGCTTCGCTGGAGAAACACTA 59.381 47.619 0.00 0.00 37.57 2.74
240 241 2.037251 AGCTTCGCTGGAGAAACACTAA 59.963 45.455 0.00 0.00 37.57 2.24
241 242 2.157863 GCTTCGCTGGAGAAACACTAAC 59.842 50.000 0.00 0.00 0.00 2.34
242 243 2.450609 TCGCTGGAGAAACACTAACC 57.549 50.000 0.00 0.00 0.00 2.85
243 244 1.689813 TCGCTGGAGAAACACTAACCA 59.310 47.619 0.00 0.00 0.00 3.67
245 246 2.427506 GCTGGAGAAACACTAACCAGG 58.572 52.381 0.00 0.00 45.45 4.45
246 247 2.224548 GCTGGAGAAACACTAACCAGGT 60.225 50.000 0.00 0.00 45.45 4.00
247 248 3.747708 GCTGGAGAAACACTAACCAGGTT 60.748 47.826 10.50 10.50 45.45 3.50
248 249 4.461198 CTGGAGAAACACTAACCAGGTTT 58.539 43.478 11.02 0.00 42.77 3.27
249 250 4.862371 TGGAGAAACACTAACCAGGTTTT 58.138 39.130 11.02 0.00 35.08 2.43
250 251 6.003859 TGGAGAAACACTAACCAGGTTTTA 57.996 37.500 11.02 0.00 35.08 1.52
251 252 5.824097 TGGAGAAACACTAACCAGGTTTTAC 59.176 40.000 11.02 0.00 35.08 2.01
252 253 5.240183 GGAGAAACACTAACCAGGTTTTACC 59.760 44.000 11.02 2.44 38.99 2.85
253 254 5.757988 AGAAACACTAACCAGGTTTTACCA 58.242 37.500 11.02 0.00 41.95 3.25
254 255 6.189133 AGAAACACTAACCAGGTTTTACCAA 58.811 36.000 11.02 0.00 41.95 3.67
255 256 6.664384 AGAAACACTAACCAGGTTTTACCAAA 59.336 34.615 11.02 0.00 41.95 3.28
256 257 6.459670 AACACTAACCAGGTTTTACCAAAG 57.540 37.500 11.02 2.08 41.95 2.77
257 258 4.340097 ACACTAACCAGGTTTTACCAAAGC 59.660 41.667 11.02 0.00 41.95 3.51
258 259 3.893200 ACTAACCAGGTTTTACCAAAGCC 59.107 43.478 11.02 0.00 41.95 4.35
269 270 8.083462 GGTTTTACCAAAGCCTATTTTCTTTG 57.917 34.615 7.51 7.51 45.17 2.77
276 277 7.652300 CAAAGCCTATTTTCTTTGGTAAACC 57.348 36.000 6.78 0.00 43.11 3.27
277 278 7.441836 CAAAGCCTATTTTCTTTGGTAAACCT 58.558 34.615 0.02 0.00 43.11 3.50
278 279 8.581578 CAAAGCCTATTTTCTTTGGTAAACCTA 58.418 33.333 0.02 0.00 43.11 3.08
279 280 7.939784 AGCCTATTTTCTTTGGTAAACCTAG 57.060 36.000 0.02 0.00 36.82 3.02
280 281 6.890268 AGCCTATTTTCTTTGGTAAACCTAGG 59.110 38.462 7.41 7.41 36.82 3.02
281 282 6.662234 GCCTATTTTCTTTGGTAAACCTAGGT 59.338 38.462 9.21 9.21 36.82 3.08
282 283 7.830697 GCCTATTTTCTTTGGTAAACCTAGGTA 59.169 37.037 16.67 0.00 36.82 3.08
283 284 9.916360 CCTATTTTCTTTGGTAAACCTAGGTAT 57.084 33.333 16.67 2.59 36.82 2.73
288 289 9.643735 TTTCTTTGGTAAACCTAGGTATTTTCA 57.356 29.630 16.67 7.75 36.82 2.69
289 290 8.625786 TCTTTGGTAAACCTAGGTATTTTCAC 57.374 34.615 16.67 6.86 36.82 3.18
290 291 7.666804 TCTTTGGTAAACCTAGGTATTTTCACC 59.333 37.037 16.67 15.43 36.47 4.02
291 292 5.490159 TGGTAAACCTAGGTATTTTCACCG 58.510 41.667 16.67 0.00 39.19 4.94
292 293 5.248020 TGGTAAACCTAGGTATTTTCACCGA 59.752 40.000 16.67 5.10 39.19 4.69
293 294 5.814188 GGTAAACCTAGGTATTTTCACCGAG 59.186 44.000 16.67 0.00 43.84 4.63
294 295 5.750352 AAACCTAGGTATTTTCACCGAGA 57.250 39.130 16.67 0.00 42.22 4.04
295 296 5.340439 AACCTAGGTATTTTCACCGAGAG 57.660 43.478 16.67 0.00 42.22 3.20
296 297 3.132467 ACCTAGGTATTTTCACCGAGAGC 59.868 47.826 14.41 0.00 42.22 4.09
297 298 3.385111 CCTAGGTATTTTCACCGAGAGCT 59.615 47.826 0.00 0.00 42.22 4.09
298 299 3.983044 AGGTATTTTCACCGAGAGCTT 57.017 42.857 0.00 0.00 43.84 3.74
299 300 3.863041 AGGTATTTTCACCGAGAGCTTC 58.137 45.455 0.00 0.00 43.84 3.86
300 301 3.260884 AGGTATTTTCACCGAGAGCTTCA 59.739 43.478 0.00 0.00 43.84 3.02
301 302 3.619038 GGTATTTTCACCGAGAGCTTCAG 59.381 47.826 0.00 0.00 0.00 3.02
302 303 3.685139 ATTTTCACCGAGAGCTTCAGA 57.315 42.857 0.00 0.00 0.00 3.27
303 304 2.440539 TTTCACCGAGAGCTTCAGAC 57.559 50.000 0.00 0.00 0.00 3.51
304 305 1.621992 TTCACCGAGAGCTTCAGACT 58.378 50.000 0.00 0.00 0.00 3.24
305 306 1.169577 TCACCGAGAGCTTCAGACTC 58.830 55.000 0.00 0.00 0.00 3.36
306 307 0.884514 CACCGAGAGCTTCAGACTCA 59.115 55.000 0.00 0.00 36.58 3.41
307 308 1.270826 CACCGAGAGCTTCAGACTCAA 59.729 52.381 0.00 0.00 36.58 3.02
308 309 2.094286 CACCGAGAGCTTCAGACTCAAT 60.094 50.000 0.00 0.00 36.58 2.57
309 310 2.165437 ACCGAGAGCTTCAGACTCAATC 59.835 50.000 0.00 0.00 36.58 2.67
310 311 2.481104 CCGAGAGCTTCAGACTCAATCC 60.481 54.545 0.00 0.00 36.58 3.01
311 312 2.481104 CGAGAGCTTCAGACTCAATCCC 60.481 54.545 0.00 0.00 36.58 3.85
312 313 2.499289 GAGAGCTTCAGACTCAATCCCA 59.501 50.000 0.00 0.00 36.58 4.37
313 314 2.909006 AGAGCTTCAGACTCAATCCCAA 59.091 45.455 0.00 0.00 36.58 4.12
314 315 3.006247 GAGCTTCAGACTCAATCCCAAC 58.994 50.000 0.00 0.00 34.18 3.77
315 316 2.641815 AGCTTCAGACTCAATCCCAACT 59.358 45.455 0.00 0.00 0.00 3.16
316 317 3.840666 AGCTTCAGACTCAATCCCAACTA 59.159 43.478 0.00 0.00 0.00 2.24
317 318 4.287067 AGCTTCAGACTCAATCCCAACTAA 59.713 41.667 0.00 0.00 0.00 2.24
318 319 4.393371 GCTTCAGACTCAATCCCAACTAAC 59.607 45.833 0.00 0.00 0.00 2.34
319 320 5.799213 CTTCAGACTCAATCCCAACTAACT 58.201 41.667 0.00 0.00 0.00 2.24
320 321 5.152623 TCAGACTCAATCCCAACTAACTG 57.847 43.478 0.00 0.00 0.00 3.16
321 322 4.593206 TCAGACTCAATCCCAACTAACTGT 59.407 41.667 0.00 0.00 0.00 3.55
322 323 5.071788 TCAGACTCAATCCCAACTAACTGTT 59.928 40.000 0.00 0.00 39.92 3.16
323 324 5.765182 CAGACTCAATCCCAACTAACTGTTT 59.235 40.000 0.00 0.00 36.63 2.83
324 325 5.998363 AGACTCAATCCCAACTAACTGTTTC 59.002 40.000 0.00 0.00 36.63 2.78
325 326 5.690865 ACTCAATCCCAACTAACTGTTTCA 58.309 37.500 0.00 0.00 36.63 2.69
326 327 6.306987 ACTCAATCCCAACTAACTGTTTCAT 58.693 36.000 0.00 0.00 36.63 2.57
327 328 6.777580 ACTCAATCCCAACTAACTGTTTCATT 59.222 34.615 0.00 0.00 36.63 2.57
328 329 6.980593 TCAATCCCAACTAACTGTTTCATTG 58.019 36.000 0.00 1.63 36.63 2.82
329 330 4.846779 TCCCAACTAACTGTTTCATTGC 57.153 40.909 0.00 0.00 36.63 3.56
330 331 4.211125 TCCCAACTAACTGTTTCATTGCA 58.789 39.130 0.00 0.00 36.63 4.08
331 332 4.832266 TCCCAACTAACTGTTTCATTGCAT 59.168 37.500 0.00 0.00 36.63 3.96
332 333 5.304101 TCCCAACTAACTGTTTCATTGCATT 59.696 36.000 0.00 0.00 36.63 3.56
333 334 5.634859 CCCAACTAACTGTTTCATTGCATTC 59.365 40.000 0.00 0.00 36.63 2.67
334 335 6.449698 CCAACTAACTGTTTCATTGCATTCT 58.550 36.000 0.00 0.00 36.63 2.40
335 336 6.925165 CCAACTAACTGTTTCATTGCATTCTT 59.075 34.615 0.00 0.00 36.63 2.52
336 337 7.115378 CCAACTAACTGTTTCATTGCATTCTTC 59.885 37.037 0.00 0.00 36.63 2.87
337 338 6.373779 ACTAACTGTTTCATTGCATTCTTCG 58.626 36.000 0.00 0.00 0.00 3.79
338 339 5.437289 AACTGTTTCATTGCATTCTTCGA 57.563 34.783 0.00 0.00 0.00 3.71
339 340 5.633830 ACTGTTTCATTGCATTCTTCGAT 57.366 34.783 0.00 0.00 0.00 3.59
340 341 5.396484 ACTGTTTCATTGCATTCTTCGATG 58.604 37.500 0.00 0.00 0.00 3.84
341 342 5.048504 ACTGTTTCATTGCATTCTTCGATGT 60.049 36.000 0.00 0.00 0.00 3.06
342 343 5.771469 TGTTTCATTGCATTCTTCGATGTT 58.229 33.333 0.00 0.00 0.00 2.71
343 344 6.215121 TGTTTCATTGCATTCTTCGATGTTT 58.785 32.000 0.00 0.00 0.00 2.83
344 345 6.363088 TGTTTCATTGCATTCTTCGATGTTTC 59.637 34.615 0.00 0.00 0.00 2.78
345 346 4.985413 TCATTGCATTCTTCGATGTTTCC 58.015 39.130 0.00 0.00 0.00 3.13
346 347 4.701651 TCATTGCATTCTTCGATGTTTCCT 59.298 37.500 0.00 0.00 0.00 3.36
347 348 4.685169 TTGCATTCTTCGATGTTTCCTC 57.315 40.909 0.00 0.00 0.00 3.71
348 349 3.673902 TGCATTCTTCGATGTTTCCTCA 58.326 40.909 0.00 0.00 0.00 3.86
349 350 3.436704 TGCATTCTTCGATGTTTCCTCAC 59.563 43.478 0.00 0.00 0.00 3.51
350 351 3.436704 GCATTCTTCGATGTTTCCTCACA 59.563 43.478 0.00 0.00 0.00 3.58
351 352 4.095483 GCATTCTTCGATGTTTCCTCACAT 59.905 41.667 0.00 0.00 40.25 3.21
352 353 5.728898 GCATTCTTCGATGTTTCCTCACATC 60.729 44.000 4.07 4.07 46.68 3.06
359 360 5.819825 GATGTTTCCTCACATCCTTTACC 57.180 43.478 2.89 0.00 45.13 2.85
360 361 4.715534 TGTTTCCTCACATCCTTTACCA 57.284 40.909 0.00 0.00 0.00 3.25
361 362 5.055265 TGTTTCCTCACATCCTTTACCAA 57.945 39.130 0.00 0.00 0.00 3.67
362 363 5.450453 TGTTTCCTCACATCCTTTACCAAA 58.550 37.500 0.00 0.00 0.00 3.28
363 364 5.534654 TGTTTCCTCACATCCTTTACCAAAG 59.465 40.000 0.00 0.00 38.24 2.77
364 365 5.576563 TTCCTCACATCCTTTACCAAAGA 57.423 39.130 0.23 0.00 41.02 2.52
365 366 5.576563 TCCTCACATCCTTTACCAAAGAA 57.423 39.130 0.23 0.00 41.02 2.52
366 367 5.947663 TCCTCACATCCTTTACCAAAGAAA 58.052 37.500 0.23 0.00 41.02 2.52
367 368 6.369629 TCCTCACATCCTTTACCAAAGAAAA 58.630 36.000 0.23 0.00 41.02 2.29
368 369 7.010160 TCCTCACATCCTTTACCAAAGAAAAT 58.990 34.615 0.23 0.00 41.02 1.82
369 370 8.167392 TCCTCACATCCTTTACCAAAGAAAATA 58.833 33.333 0.23 0.00 41.02 1.40
370 371 8.462016 CCTCACATCCTTTACCAAAGAAAATAG 58.538 37.037 0.23 0.00 41.02 1.73
371 372 9.231297 CTCACATCCTTTACCAAAGAAAATAGA 57.769 33.333 0.23 0.00 41.02 1.98
372 373 9.581289 TCACATCCTTTACCAAAGAAAATAGAA 57.419 29.630 0.23 0.00 41.02 2.10
373 374 9.846248 CACATCCTTTACCAAAGAAAATAGAAG 57.154 33.333 0.23 0.00 41.02 2.85
374 375 9.807921 ACATCCTTTACCAAAGAAAATAGAAGA 57.192 29.630 0.23 0.00 41.02 2.87
377 378 9.862149 TCCTTTACCAAAGAAAATAGAAGACTT 57.138 29.630 0.23 0.00 41.02 3.01
395 396 9.007901 AGAAGACTTATTGAGATTGACCTTTTG 57.992 33.333 0.00 0.00 0.00 2.44
396 397 8.697507 AAGACTTATTGAGATTGACCTTTTGT 57.302 30.769 0.00 0.00 0.00 2.83
397 398 8.329203 AGACTTATTGAGATTGACCTTTTGTC 57.671 34.615 0.00 0.00 44.72 3.18
398 399 7.391833 AGACTTATTGAGATTGACCTTTTGTCC 59.608 37.037 0.00 0.00 43.78 4.02
399 400 7.004086 ACTTATTGAGATTGACCTTTTGTCCA 58.996 34.615 0.00 0.00 43.78 4.02
400 401 5.972107 ATTGAGATTGACCTTTTGTCCAG 57.028 39.130 0.00 0.00 43.78 3.86
401 402 4.705110 TGAGATTGACCTTTTGTCCAGA 57.295 40.909 0.00 0.00 43.78 3.86
402 403 5.246981 TGAGATTGACCTTTTGTCCAGAT 57.753 39.130 0.00 0.00 43.78 2.90
403 404 5.005740 TGAGATTGACCTTTTGTCCAGATG 58.994 41.667 0.00 0.00 43.78 2.90
404 405 3.760684 AGATTGACCTTTTGTCCAGATGC 59.239 43.478 0.00 0.00 43.78 3.91
405 406 2.957402 TGACCTTTTGTCCAGATGCT 57.043 45.000 0.00 0.00 43.78 3.79
406 407 3.228188 TGACCTTTTGTCCAGATGCTT 57.772 42.857 0.00 0.00 43.78 3.91
407 408 3.149196 TGACCTTTTGTCCAGATGCTTC 58.851 45.455 0.00 0.00 43.78 3.86
408 409 3.149196 GACCTTTTGTCCAGATGCTTCA 58.851 45.455 2.07 0.00 38.09 3.02
409 410 3.760684 GACCTTTTGTCCAGATGCTTCAT 59.239 43.478 2.07 0.00 38.09 2.57
410 411 3.508793 ACCTTTTGTCCAGATGCTTCATG 59.491 43.478 2.07 0.00 0.00 3.07
411 412 3.508762 CTTTTGTCCAGATGCTTCATGC 58.491 45.455 2.07 0.00 43.25 4.06
412 413 2.502142 TTGTCCAGATGCTTCATGCT 57.498 45.000 2.07 0.00 43.37 3.79
413 414 2.502142 TGTCCAGATGCTTCATGCTT 57.498 45.000 2.07 0.00 43.37 3.91
414 415 2.089201 TGTCCAGATGCTTCATGCTTG 58.911 47.619 2.07 0.00 43.37 4.01
415 416 1.100510 TCCAGATGCTTCATGCTTGC 58.899 50.000 2.07 0.00 43.37 4.01
416 417 1.103803 CCAGATGCTTCATGCTTGCT 58.896 50.000 2.07 0.00 43.37 3.91
417 418 1.065701 CCAGATGCTTCATGCTTGCTC 59.934 52.381 2.07 0.00 43.37 4.26
418 419 1.743394 CAGATGCTTCATGCTTGCTCA 59.257 47.619 2.07 0.00 43.37 4.26
419 420 2.359214 CAGATGCTTCATGCTTGCTCAT 59.641 45.455 2.07 0.00 43.37 2.90
420 421 3.564225 CAGATGCTTCATGCTTGCTCATA 59.436 43.478 2.07 0.00 43.37 2.15
421 422 3.564644 AGATGCTTCATGCTTGCTCATAC 59.435 43.478 2.07 0.00 43.37 2.39
422 423 2.995283 TGCTTCATGCTTGCTCATACT 58.005 42.857 0.00 0.00 43.37 2.12
423 424 3.349927 TGCTTCATGCTTGCTCATACTT 58.650 40.909 0.00 0.00 43.37 2.24
424 425 3.376234 TGCTTCATGCTTGCTCATACTTC 59.624 43.478 0.00 0.00 43.37 3.01
425 426 3.626670 GCTTCATGCTTGCTCATACTTCT 59.373 43.478 0.00 0.00 38.95 2.85
426 427 4.096081 GCTTCATGCTTGCTCATACTTCTT 59.904 41.667 0.00 0.00 38.95 2.52
427 428 5.295292 GCTTCATGCTTGCTCATACTTCTTA 59.705 40.000 0.00 0.00 38.95 2.10
428 429 6.183360 GCTTCATGCTTGCTCATACTTCTTAA 60.183 38.462 0.00 0.00 38.95 1.85
429 430 6.915544 TCATGCTTGCTCATACTTCTTAAG 57.084 37.500 0.00 0.00 0.00 1.85
430 431 6.643388 TCATGCTTGCTCATACTTCTTAAGA 58.357 36.000 0.00 0.00 0.00 2.10
431 432 7.278135 TCATGCTTGCTCATACTTCTTAAGAT 58.722 34.615 5.89 0.00 0.00 2.40
432 433 8.424133 TCATGCTTGCTCATACTTCTTAAGATA 58.576 33.333 5.89 0.00 0.00 1.98
433 434 8.494347 CATGCTTGCTCATACTTCTTAAGATAC 58.506 37.037 5.89 0.00 0.00 2.24
434 435 7.786030 TGCTTGCTCATACTTCTTAAGATACT 58.214 34.615 5.89 0.00 0.00 2.12
435 436 8.914011 TGCTTGCTCATACTTCTTAAGATACTA 58.086 33.333 5.89 0.00 0.00 1.82
436 437 9.187455 GCTTGCTCATACTTCTTAAGATACTAC 57.813 37.037 5.89 0.00 0.00 2.73
439 440 9.628500 TGCTCATACTTCTTAAGATACTACTCA 57.372 33.333 5.89 0.00 0.00 3.41
458 459 9.461312 ACTACTCAGATGAATCATACTATCCTC 57.539 37.037 0.00 0.00 0.00 3.71
459 460 7.716799 ACTCAGATGAATCATACTATCCTCC 57.283 40.000 0.00 0.00 0.00 4.30
460 461 7.477864 ACTCAGATGAATCATACTATCCTCCT 58.522 38.462 0.00 0.00 0.00 3.69
461 462 7.615365 ACTCAGATGAATCATACTATCCTCCTC 59.385 40.741 0.00 0.00 0.00 3.71
462 463 7.707648 TCAGATGAATCATACTATCCTCCTCT 58.292 38.462 0.00 0.00 0.00 3.69
463 464 7.614974 TCAGATGAATCATACTATCCTCCTCTG 59.385 40.741 0.00 0.00 0.00 3.35
464 465 5.991933 TGAATCATACTATCCTCCTCTGC 57.008 43.478 0.00 0.00 0.00 4.26
465 466 5.649265 TGAATCATACTATCCTCCTCTGCT 58.351 41.667 0.00 0.00 0.00 4.24
466 467 6.080682 TGAATCATACTATCCTCCTCTGCTT 58.919 40.000 0.00 0.00 0.00 3.91
467 468 6.210385 TGAATCATACTATCCTCCTCTGCTTC 59.790 42.308 0.00 0.00 0.00 3.86
468 469 4.411927 TCATACTATCCTCCTCTGCTTCC 58.588 47.826 0.00 0.00 0.00 3.46
469 470 2.856760 ACTATCCTCCTCTGCTTCCA 57.143 50.000 0.00 0.00 0.00 3.53
470 471 3.342926 ACTATCCTCCTCTGCTTCCAT 57.657 47.619 0.00 0.00 0.00 3.41
471 472 4.477536 ACTATCCTCCTCTGCTTCCATA 57.522 45.455 0.00 0.00 0.00 2.74
472 473 4.820775 ACTATCCTCCTCTGCTTCCATAA 58.179 43.478 0.00 0.00 0.00 1.90
473 474 5.219739 ACTATCCTCCTCTGCTTCCATAAA 58.780 41.667 0.00 0.00 0.00 1.40
474 475 5.667626 ACTATCCTCCTCTGCTTCCATAAAA 59.332 40.000 0.00 0.00 0.00 1.52
475 476 4.927267 TCCTCCTCTGCTTCCATAAAAA 57.073 40.909 0.00 0.00 0.00 1.94
476 477 4.589908 TCCTCCTCTGCTTCCATAAAAAC 58.410 43.478 0.00 0.00 0.00 2.43
477 478 4.042809 TCCTCCTCTGCTTCCATAAAAACA 59.957 41.667 0.00 0.00 0.00 2.83
478 479 4.766891 CCTCCTCTGCTTCCATAAAAACAA 59.233 41.667 0.00 0.00 0.00 2.83
479 480 5.420104 CCTCCTCTGCTTCCATAAAAACAAT 59.580 40.000 0.00 0.00 0.00 2.71
480 481 6.271488 TCCTCTGCTTCCATAAAAACAATG 57.729 37.500 0.00 0.00 0.00 2.82
481 482 5.774690 TCCTCTGCTTCCATAAAAACAATGT 59.225 36.000 0.00 0.00 0.00 2.71
482 483 6.267471 TCCTCTGCTTCCATAAAAACAATGTT 59.733 34.615 0.00 0.00 0.00 2.71
483 484 7.450014 TCCTCTGCTTCCATAAAAACAATGTTA 59.550 33.333 0.00 0.00 0.00 2.41
484 485 8.253113 CCTCTGCTTCCATAAAAACAATGTTAT 58.747 33.333 0.00 0.00 0.00 1.89
485 486 9.643693 CTCTGCTTCCATAAAAACAATGTTATT 57.356 29.630 0.00 0.00 0.00 1.40
510 511 6.647212 TCAGCAAATAGAAGATGTGTAACG 57.353 37.500 0.00 0.00 42.39 3.18
511 512 6.163476 TCAGCAAATAGAAGATGTGTAACGT 58.837 36.000 0.00 0.00 42.39 3.99
512 513 6.090763 TCAGCAAATAGAAGATGTGTAACGTG 59.909 38.462 0.00 0.00 42.39 4.49
513 514 6.090763 CAGCAAATAGAAGATGTGTAACGTGA 59.909 38.462 0.00 0.00 42.39 4.35
514 515 6.311445 AGCAAATAGAAGATGTGTAACGTGAG 59.689 38.462 0.00 0.00 42.39 3.51
515 516 6.455646 GCAAATAGAAGATGTGTAACGTGAGG 60.456 42.308 0.00 0.00 42.39 3.86
516 517 3.594603 AGAAGATGTGTAACGTGAGGG 57.405 47.619 0.00 0.00 42.39 4.30
517 518 2.897969 AGAAGATGTGTAACGTGAGGGT 59.102 45.455 0.00 0.00 42.39 4.34
518 519 3.323979 AGAAGATGTGTAACGTGAGGGTT 59.676 43.478 0.00 0.00 42.39 4.11
519 520 3.040147 AGATGTGTAACGTGAGGGTTG 57.960 47.619 0.00 0.00 42.39 3.77
520 521 2.367567 AGATGTGTAACGTGAGGGTTGT 59.632 45.455 0.00 0.00 42.39 3.32
521 522 2.228138 TGTGTAACGTGAGGGTTGTC 57.772 50.000 0.00 0.00 42.39 3.18
522 523 1.202557 TGTGTAACGTGAGGGTTGTCC 60.203 52.381 0.00 0.00 42.39 4.02
532 533 3.153825 GGTTGTCCCTCCCGAACA 58.846 61.111 0.00 0.00 0.00 3.18
533 534 1.683441 GGTTGTCCCTCCCGAACAT 59.317 57.895 0.00 0.00 0.00 2.71
534 535 0.392595 GGTTGTCCCTCCCGAACATC 60.393 60.000 0.00 0.00 0.00 3.06
535 536 0.323629 GTTGTCCCTCCCGAACATCA 59.676 55.000 0.00 0.00 0.00 3.07
536 537 0.323629 TTGTCCCTCCCGAACATCAC 59.676 55.000 0.00 0.00 0.00 3.06
537 538 1.221021 GTCCCTCCCGAACATCACC 59.779 63.158 0.00 0.00 0.00 4.02
538 539 1.993391 TCCCTCCCGAACATCACCC 60.993 63.158 0.00 0.00 0.00 4.61
539 540 2.590092 CCTCCCGAACATCACCCC 59.410 66.667 0.00 0.00 0.00 4.95
540 541 1.995626 CCTCCCGAACATCACCCCT 60.996 63.158 0.00 0.00 0.00 4.79
541 542 1.562672 CCTCCCGAACATCACCCCTT 61.563 60.000 0.00 0.00 0.00 3.95
542 543 0.328258 CTCCCGAACATCACCCCTTT 59.672 55.000 0.00 0.00 0.00 3.11
543 544 0.774908 TCCCGAACATCACCCCTTTT 59.225 50.000 0.00 0.00 0.00 2.27
544 545 1.986631 TCCCGAACATCACCCCTTTTA 59.013 47.619 0.00 0.00 0.00 1.52
545 546 2.578940 TCCCGAACATCACCCCTTTTAT 59.421 45.455 0.00 0.00 0.00 1.40
546 547 3.010808 TCCCGAACATCACCCCTTTTATT 59.989 43.478 0.00 0.00 0.00 1.40
547 548 3.767131 CCCGAACATCACCCCTTTTATTT 59.233 43.478 0.00 0.00 0.00 1.40
548 549 4.381505 CCCGAACATCACCCCTTTTATTTG 60.382 45.833 0.00 0.00 0.00 2.32
549 550 4.219725 CCGAACATCACCCCTTTTATTTGT 59.780 41.667 0.00 0.00 0.00 2.83
550 551 5.279256 CCGAACATCACCCCTTTTATTTGTT 60.279 40.000 0.00 0.00 0.00 2.83
551 552 5.633182 CGAACATCACCCCTTTTATTTGTTG 59.367 40.000 0.00 0.00 0.00 3.33
552 553 6.493189 AACATCACCCCTTTTATTTGTTGT 57.507 33.333 0.00 0.00 0.00 3.32
553 554 6.493189 ACATCACCCCTTTTATTTGTTGTT 57.507 33.333 0.00 0.00 0.00 2.83
554 555 6.521162 ACATCACCCCTTTTATTTGTTGTTC 58.479 36.000 0.00 0.00 0.00 3.18
555 556 5.538849 TCACCCCTTTTATTTGTTGTTCC 57.461 39.130 0.00 0.00 0.00 3.62
556 557 5.212745 TCACCCCTTTTATTTGTTGTTCCT 58.787 37.500 0.00 0.00 0.00 3.36
557 558 5.069781 TCACCCCTTTTATTTGTTGTTCCTG 59.930 40.000 0.00 0.00 0.00 3.86
558 559 4.202315 ACCCCTTTTATTTGTTGTTCCTGC 60.202 41.667 0.00 0.00 0.00 4.85
559 560 4.040339 CCCCTTTTATTTGTTGTTCCTGCT 59.960 41.667 0.00 0.00 0.00 4.24
560 561 4.990426 CCCTTTTATTTGTTGTTCCTGCTG 59.010 41.667 0.00 0.00 0.00 4.41
561 562 5.221422 CCCTTTTATTTGTTGTTCCTGCTGA 60.221 40.000 0.00 0.00 0.00 4.26
562 563 5.691754 CCTTTTATTTGTTGTTCCTGCTGAC 59.308 40.000 0.00 0.00 0.00 3.51
563 564 5.843673 TTTATTTGTTGTTCCTGCTGACA 57.156 34.783 0.00 0.00 0.00 3.58
564 565 6.403866 TTTATTTGTTGTTCCTGCTGACAT 57.596 33.333 0.00 0.00 0.00 3.06
565 566 4.942761 ATTTGTTGTTCCTGCTGACATT 57.057 36.364 0.00 0.00 0.00 2.71
566 567 4.734398 TTTGTTGTTCCTGCTGACATTT 57.266 36.364 0.00 0.00 0.00 2.32
567 568 4.734398 TTGTTGTTCCTGCTGACATTTT 57.266 36.364 0.00 0.00 0.00 1.82
568 569 4.044336 TGTTGTTCCTGCTGACATTTTG 57.956 40.909 0.00 0.00 0.00 2.44
569 570 3.446873 TGTTGTTCCTGCTGACATTTTGT 59.553 39.130 0.00 0.00 0.00 2.83
570 571 4.081752 TGTTGTTCCTGCTGACATTTTGTT 60.082 37.500 0.00 0.00 0.00 2.83
571 572 4.734398 TGTTCCTGCTGACATTTTGTTT 57.266 36.364 0.00 0.00 0.00 2.83
572 573 5.843673 TGTTCCTGCTGACATTTTGTTTA 57.156 34.783 0.00 0.00 0.00 2.01
573 574 5.587289 TGTTCCTGCTGACATTTTGTTTAC 58.413 37.500 0.00 0.00 0.00 2.01
574 575 4.481930 TCCTGCTGACATTTTGTTTACG 57.518 40.909 0.00 0.00 0.00 3.18
575 576 4.130857 TCCTGCTGACATTTTGTTTACGA 58.869 39.130 0.00 0.00 0.00 3.43
576 577 4.213270 TCCTGCTGACATTTTGTTTACGAG 59.787 41.667 0.00 0.00 0.00 4.18
577 578 4.213270 CCTGCTGACATTTTGTTTACGAGA 59.787 41.667 0.00 0.00 0.00 4.04
578 579 5.342806 TGCTGACATTTTGTTTACGAGAG 57.657 39.130 0.00 0.00 0.00 3.20
579 580 4.151798 GCTGACATTTTGTTTACGAGAGC 58.848 43.478 0.00 0.00 0.00 4.09
580 581 4.712763 CTGACATTTTGTTTACGAGAGCC 58.287 43.478 0.00 0.00 0.00 4.70
581 582 3.185594 TGACATTTTGTTTACGAGAGCCG 59.814 43.478 0.00 0.00 45.44 5.52
582 583 3.395639 ACATTTTGTTTACGAGAGCCGA 58.604 40.909 0.00 0.00 41.76 5.54
583 584 3.810941 ACATTTTGTTTACGAGAGCCGAA 59.189 39.130 0.00 0.00 41.76 4.30
584 585 4.273969 ACATTTTGTTTACGAGAGCCGAAA 59.726 37.500 0.00 0.00 41.76 3.46
585 586 4.879104 TTTTGTTTACGAGAGCCGAAAA 57.121 36.364 0.00 0.00 41.76 2.29
586 587 4.879104 TTTGTTTACGAGAGCCGAAAAA 57.121 36.364 0.00 0.00 41.76 1.94
587 588 3.865224 TGTTTACGAGAGCCGAAAAAC 57.135 42.857 0.00 0.00 42.31 2.43
588 589 3.196463 TGTTTACGAGAGCCGAAAAACA 58.804 40.909 13.90 13.90 45.46 2.83
589 590 3.810941 TGTTTACGAGAGCCGAAAAACAT 59.189 39.130 13.90 0.00 44.27 2.71
590 591 4.273969 TGTTTACGAGAGCCGAAAAACATT 59.726 37.500 13.90 0.00 44.27 2.71
591 592 4.657075 TTACGAGAGCCGAAAAACATTC 57.343 40.909 0.00 0.00 41.76 2.67
592 593 1.804748 ACGAGAGCCGAAAAACATTCC 59.195 47.619 0.00 0.00 41.76 3.01
593 594 1.804151 CGAGAGCCGAAAAACATTCCA 59.196 47.619 0.00 0.00 41.76 3.53
594 595 2.412847 CGAGAGCCGAAAAACATTCCAC 60.413 50.000 0.00 0.00 41.76 4.02
595 596 1.535462 AGAGCCGAAAAACATTCCACG 59.465 47.619 0.00 0.00 0.00 4.94
596 597 0.039527 AGCCGAAAAACATTCCACGC 60.040 50.000 0.00 0.00 0.00 5.34
597 598 0.318275 GCCGAAAAACATTCCACGCA 60.318 50.000 0.00 0.00 0.00 5.24
598 599 1.866063 GCCGAAAAACATTCCACGCAA 60.866 47.619 0.00 0.00 0.00 4.85
599 600 2.464865 CCGAAAAACATTCCACGCAAA 58.535 42.857 0.00 0.00 0.00 3.68
600 601 2.860735 CCGAAAAACATTCCACGCAAAA 59.139 40.909 0.00 0.00 0.00 2.44
601 602 3.492756 CCGAAAAACATTCCACGCAAAAT 59.507 39.130 0.00 0.00 0.00 1.82
602 603 4.681942 CCGAAAAACATTCCACGCAAAATA 59.318 37.500 0.00 0.00 0.00 1.40
603 604 5.164100 CCGAAAAACATTCCACGCAAAATAG 60.164 40.000 0.00 0.00 0.00 1.73
604 605 5.627367 CGAAAAACATTCCACGCAAAATAGA 59.373 36.000 0.00 0.00 0.00 1.98
605 606 6.143118 CGAAAAACATTCCACGCAAAATAGAA 59.857 34.615 0.00 0.00 0.00 2.10
606 607 7.306283 CGAAAAACATTCCACGCAAAATAGAAA 60.306 33.333 0.00 0.00 0.00 2.52
607 608 6.763303 AAACATTCCACGCAAAATAGAAAC 57.237 33.333 0.00 0.00 0.00 2.78
608 609 5.446143 ACATTCCACGCAAAATAGAAACA 57.554 34.783 0.00 0.00 0.00 2.83
609 610 5.837437 ACATTCCACGCAAAATAGAAACAA 58.163 33.333 0.00 0.00 0.00 2.83
610 611 6.276847 ACATTCCACGCAAAATAGAAACAAA 58.723 32.000 0.00 0.00 0.00 2.83
611 612 6.758886 ACATTCCACGCAAAATAGAAACAAAA 59.241 30.769 0.00 0.00 0.00 2.44
717 718 2.047151 CTGTGCGCACCAACTCGTTT 62.047 55.000 35.72 0.00 0.00 3.60
718 719 1.063488 GTGCGCACCAACTCGTTTT 59.937 52.632 30.12 0.00 0.00 2.43
719 720 1.063327 TGCGCACCAACTCGTTTTG 59.937 52.632 5.66 0.00 0.00 2.44
734 735 1.668751 GTTTTGTCGTGAACTCTGCCA 59.331 47.619 0.00 0.00 0.00 4.92
1016 1080 3.073650 AGTTCCATGTCTTCCTCAAGCTT 59.926 43.478 0.00 0.00 0.00 3.74
1378 1443 1.068434 CTCCGGAAGAAGAGATGGAGC 59.932 57.143 5.23 0.00 32.95 4.70
1782 1856 0.178967 TGTGGGCCAAATTCAGAGCA 60.179 50.000 8.40 0.00 0.00 4.26
1798 1872 1.153369 GCATAGAGCCAAGTGCCGA 60.153 57.895 0.00 0.00 42.71 5.54
1917 2010 9.545105 AAATCATAATGCTGAAACTTTTTGTGA 57.455 25.926 0.00 0.00 0.00 3.58
1962 2059 9.346725 CAGAGCCAAACAATTAAGTTTAGAATC 57.653 33.333 0.00 0.00 39.55 2.52
1981 2078 9.912634 TTAGAATCTTTTTGGAGCTGTTAAATG 57.087 29.630 0.00 0.00 0.00 2.32
2041 2138 7.114811 CACCGTGATTTAAATCAAAGACCAAAG 59.885 37.037 28.02 14.84 46.13 2.77
2064 2161 2.821969 GTCATGGAAAATGTGCCTCAGT 59.178 45.455 0.00 0.00 0.00 3.41
2206 2307 4.755507 GGACTCGACCCCCGGACT 62.756 72.222 0.73 0.00 39.14 3.85
2217 2318 3.047877 CCGGACTGCGTGGGTTTC 61.048 66.667 0.00 0.00 0.00 2.78
2254 2355 0.460311 CTGGTAACCGCTAGGACAGG 59.540 60.000 0.00 0.00 41.02 4.00
2277 2378 4.825085 GTGGAAAGACTTTGACATGGGTAA 59.175 41.667 4.85 0.00 0.00 2.85
2292 2393 6.158260 ACATGGGTAAGGAAGGAAGGTATAT 58.842 40.000 0.00 0.00 0.00 0.86
2338 2450 1.860078 GCGTGAGAGTGGTTTTCCG 59.140 57.895 0.00 0.00 44.36 4.30
2367 2479 4.219115 TGCACTGAAATTTTGGAGGGTTA 58.781 39.130 0.00 0.00 0.00 2.85
2463 2584 5.555966 TGCATGTTAGTTCATGACTTGGTA 58.444 37.500 10.28 0.00 45.41 3.25
2541 2664 6.239217 TGGATAGATAAGATGCAACACACT 57.761 37.500 0.00 0.00 0.00 3.55
2550 2673 1.674359 TGCAACACACTGTACCCTTG 58.326 50.000 0.00 0.00 0.00 3.61
2551 2674 0.310854 GCAACACACTGTACCCTTGC 59.689 55.000 0.00 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.782244 GAGCAAGCCACGCTCGTG 61.782 66.667 14.78 14.78 45.82 4.35
17 18 2.507110 ATACACGAGCAAGCCACGCT 62.507 55.000 8.64 0.00 44.10 5.07
18 19 0.804544 TATACACGAGCAAGCCACGC 60.805 55.000 8.64 0.00 0.00 5.34
19 20 1.852942 ATATACACGAGCAAGCCACG 58.147 50.000 0.00 7.48 0.00 4.94
20 21 4.094294 TGAAAATATACACGAGCAAGCCAC 59.906 41.667 0.00 0.00 0.00 5.01
21 22 4.094294 GTGAAAATATACACGAGCAAGCCA 59.906 41.667 0.00 0.00 0.00 4.75
22 23 4.588278 GTGAAAATATACACGAGCAAGCC 58.412 43.478 0.00 0.00 0.00 4.35
31 32 4.207841 GGTACGAGGCGTGAAAATATACAC 59.792 45.833 2.33 0.00 41.39 2.90
32 33 4.362279 GGTACGAGGCGTGAAAATATACA 58.638 43.478 2.33 0.00 41.39 2.29
33 34 4.961433 GGTACGAGGCGTGAAAATATAC 57.039 45.455 2.33 0.00 41.39 1.47
50 51 4.446413 CCCAGGCCACGACGGTAC 62.446 72.222 5.01 0.00 36.97 3.34
60 61 2.830186 TAAACATCCACGCCCAGGCC 62.830 60.000 2.37 0.00 37.98 5.19
61 62 1.377987 TAAACATCCACGCCCAGGC 60.378 57.895 0.00 0.00 37.85 4.85
62 63 0.322098 TGTAAACATCCACGCCCAGG 60.322 55.000 0.00 0.00 0.00 4.45
63 64 0.802494 GTGTAAACATCCACGCCCAG 59.198 55.000 0.00 0.00 0.00 4.45
64 65 0.951525 CGTGTAAACATCCACGCCCA 60.952 55.000 0.00 0.00 46.45 5.36
65 66 1.791662 CGTGTAAACATCCACGCCC 59.208 57.895 0.00 0.00 46.45 6.13
69 70 1.530323 AAGGGCGTGTAAACATCCAC 58.470 50.000 6.67 0.00 0.00 4.02
70 71 2.279935 AAAGGGCGTGTAAACATCCA 57.720 45.000 6.67 0.00 0.00 3.41
71 72 3.502979 TGTAAAAGGGCGTGTAAACATCC 59.497 43.478 0.00 0.00 0.00 3.51
72 73 4.469552 GTGTAAAAGGGCGTGTAAACATC 58.530 43.478 0.00 0.00 0.00 3.06
73 74 3.058777 CGTGTAAAAGGGCGTGTAAACAT 60.059 43.478 0.00 0.00 0.00 2.71
74 75 2.287373 CGTGTAAAAGGGCGTGTAAACA 59.713 45.455 0.00 0.00 0.00 2.83
75 76 2.543430 TCGTGTAAAAGGGCGTGTAAAC 59.457 45.455 0.00 0.00 0.00 2.01
76 77 2.801679 CTCGTGTAAAAGGGCGTGTAAA 59.198 45.455 0.00 0.00 0.00 2.01
77 78 2.224018 ACTCGTGTAAAAGGGCGTGTAA 60.224 45.455 0.00 0.00 30.94 2.41
78 79 1.340889 ACTCGTGTAAAAGGGCGTGTA 59.659 47.619 0.00 0.00 30.94 2.90
79 80 0.105408 ACTCGTGTAAAAGGGCGTGT 59.895 50.000 0.00 0.00 0.00 4.49
80 81 0.788391 GACTCGTGTAAAAGGGCGTG 59.212 55.000 0.00 0.00 0.00 5.34
81 82 0.665369 CGACTCGTGTAAAAGGGCGT 60.665 55.000 0.00 0.00 0.00 5.68
82 83 1.952266 GCGACTCGTGTAAAAGGGCG 61.952 60.000 0.00 0.00 0.00 6.13
83 84 0.669625 AGCGACTCGTGTAAAAGGGC 60.670 55.000 0.00 0.00 0.00 5.19
84 85 1.068474 CAGCGACTCGTGTAAAAGGG 58.932 55.000 0.00 0.00 0.00 3.95
85 86 1.068474 CCAGCGACTCGTGTAAAAGG 58.932 55.000 0.00 0.00 0.00 3.11
86 87 1.068474 CCCAGCGACTCGTGTAAAAG 58.932 55.000 0.00 0.00 0.00 2.27
87 88 0.675083 TCCCAGCGACTCGTGTAAAA 59.325 50.000 0.00 0.00 0.00 1.52
88 89 0.242825 CTCCCAGCGACTCGTGTAAA 59.757 55.000 0.00 0.00 0.00 2.01
89 90 1.880894 CTCCCAGCGACTCGTGTAA 59.119 57.895 0.00 0.00 0.00 2.41
90 91 2.697761 GCTCCCAGCGACTCGTGTA 61.698 63.158 0.00 0.00 0.00 2.90
91 92 4.057428 GCTCCCAGCGACTCGTGT 62.057 66.667 0.00 0.00 0.00 4.49
92 93 3.978723 CTGCTCCCAGCGACTCGTG 62.979 68.421 0.00 0.00 46.26 4.35
93 94 3.753434 CTGCTCCCAGCGACTCGT 61.753 66.667 0.00 0.00 46.26 4.18
94 95 2.771763 AAACTGCTCCCAGCGACTCG 62.772 60.000 0.00 0.00 46.26 4.18
95 96 0.603975 AAAACTGCTCCCAGCGACTC 60.604 55.000 0.00 0.00 46.26 3.36
96 97 0.179018 AAAAACTGCTCCCAGCGACT 60.179 50.000 0.00 0.00 46.26 4.18
97 98 2.331265 AAAAACTGCTCCCAGCGAC 58.669 52.632 0.00 0.00 46.26 5.19
98 99 4.898607 AAAAACTGCTCCCAGCGA 57.101 50.000 0.00 0.00 46.26 4.93
112 113 6.838198 AATATACACGATGCGAGCTAAAAA 57.162 33.333 0.00 0.00 0.00 1.94
113 114 6.645705 CAAATATACACGATGCGAGCTAAAA 58.354 36.000 0.00 0.00 0.00 1.52
114 115 5.333035 GCAAATATACACGATGCGAGCTAAA 60.333 40.000 0.00 0.00 0.00 1.85
115 116 4.149922 GCAAATATACACGATGCGAGCTAA 59.850 41.667 0.00 0.00 0.00 3.09
116 117 3.673338 GCAAATATACACGATGCGAGCTA 59.327 43.478 0.00 0.00 0.00 3.32
117 118 2.476619 GCAAATATACACGATGCGAGCT 59.523 45.455 0.00 0.00 0.00 4.09
118 119 2.476619 AGCAAATATACACGATGCGAGC 59.523 45.455 0.00 0.00 41.72 5.03
119 120 6.912815 GTATAGCAAATATACACGATGCGAG 58.087 40.000 0.00 0.00 43.94 5.03
120 121 6.864560 GTATAGCAAATATACACGATGCGA 57.135 37.500 0.00 0.00 43.94 5.10
133 134 8.749354 TCATCTATATGGACGTGTATAGCAAAT 58.251 33.333 0.00 0.00 33.11 2.32
134 135 8.117813 TCATCTATATGGACGTGTATAGCAAA 57.882 34.615 0.00 0.00 33.11 3.68
135 136 7.696992 TCATCTATATGGACGTGTATAGCAA 57.303 36.000 0.00 0.00 33.11 3.91
136 137 7.013369 GGATCATCTATATGGACGTGTATAGCA 59.987 40.741 0.00 0.00 33.11 3.49
137 138 7.013369 TGGATCATCTATATGGACGTGTATAGC 59.987 40.741 0.00 0.00 33.11 2.97
138 139 8.346300 GTGGATCATCTATATGGACGTGTATAG 58.654 40.741 0.00 2.87 33.95 1.31
139 140 8.053355 AGTGGATCATCTATATGGACGTGTATA 58.947 37.037 0.00 0.00 33.61 1.47
140 141 6.892456 AGTGGATCATCTATATGGACGTGTAT 59.108 38.462 0.00 0.00 33.61 2.29
141 142 6.246163 AGTGGATCATCTATATGGACGTGTA 58.754 40.000 0.00 0.00 33.61 2.90
142 143 5.080337 AGTGGATCATCTATATGGACGTGT 58.920 41.667 0.00 0.00 33.61 4.49
143 144 5.651387 AGTGGATCATCTATATGGACGTG 57.349 43.478 0.00 0.00 33.61 4.49
144 145 6.722328 TCTAGTGGATCATCTATATGGACGT 58.278 40.000 0.00 0.00 33.61 4.34
145 146 7.051000 TCTCTAGTGGATCATCTATATGGACG 58.949 42.308 0.00 0.00 33.61 4.79
146 147 8.849168 CATCTCTAGTGGATCATCTATATGGAC 58.151 40.741 0.00 0.00 33.61 4.02
147 148 7.505248 GCATCTCTAGTGGATCATCTATATGGA 59.495 40.741 0.00 0.00 33.61 3.41
148 149 7.506599 AGCATCTCTAGTGGATCATCTATATGG 59.493 40.741 0.00 0.00 33.61 2.74
149 150 8.467963 AGCATCTCTAGTGGATCATCTATATG 57.532 38.462 0.00 3.16 0.00 1.78
150 151 8.696043 GAGCATCTCTAGTGGATCATCTATAT 57.304 38.462 0.00 0.00 0.00 0.86
191 192 6.368791 CGGAGTATTTGTGATGTTCTCTTGAA 59.631 38.462 0.00 0.00 0.00 2.69
192 193 5.869344 CGGAGTATTTGTGATGTTCTCTTGA 59.131 40.000 0.00 0.00 0.00 3.02
193 194 5.869344 TCGGAGTATTTGTGATGTTCTCTTG 59.131 40.000 0.00 0.00 0.00 3.02
194 195 6.037786 TCGGAGTATTTGTGATGTTCTCTT 57.962 37.500 0.00 0.00 0.00 2.85
195 196 5.419155 TCTCGGAGTATTTGTGATGTTCTCT 59.581 40.000 4.69 0.00 0.00 3.10
196 197 5.651530 TCTCGGAGTATTTGTGATGTTCTC 58.348 41.667 4.69 0.00 0.00 2.87
197 198 5.655488 CTCTCGGAGTATTTGTGATGTTCT 58.345 41.667 4.69 0.00 0.00 3.01
198 199 4.268884 GCTCTCGGAGTATTTGTGATGTTC 59.731 45.833 4.69 0.00 31.39 3.18
199 200 4.081420 AGCTCTCGGAGTATTTGTGATGTT 60.081 41.667 4.69 0.00 31.39 2.71
200 201 3.449018 AGCTCTCGGAGTATTTGTGATGT 59.551 43.478 4.69 0.00 31.39 3.06
201 202 4.052159 AGCTCTCGGAGTATTTGTGATG 57.948 45.455 4.69 0.00 31.39 3.07
202 203 4.688021 GAAGCTCTCGGAGTATTTGTGAT 58.312 43.478 4.69 0.00 31.39 3.06
203 204 3.427638 CGAAGCTCTCGGAGTATTTGTGA 60.428 47.826 4.69 0.00 44.20 3.58
204 205 2.854777 CGAAGCTCTCGGAGTATTTGTG 59.145 50.000 4.69 0.00 44.20 3.33
205 206 3.152261 CGAAGCTCTCGGAGTATTTGT 57.848 47.619 4.69 0.00 44.20 2.83
221 222 2.737252 GGTTAGTGTTTCTCCAGCGAAG 59.263 50.000 0.00 0.00 0.00 3.79
222 223 2.103432 TGGTTAGTGTTTCTCCAGCGAA 59.897 45.455 0.00 0.00 0.00 4.70
223 224 1.689813 TGGTTAGTGTTTCTCCAGCGA 59.310 47.619 0.00 0.00 0.00 4.93
224 225 2.069273 CTGGTTAGTGTTTCTCCAGCG 58.931 52.381 0.00 0.00 39.02 5.18
225 226 2.224548 ACCTGGTTAGTGTTTCTCCAGC 60.225 50.000 0.00 0.00 42.77 4.85
226 227 3.771577 ACCTGGTTAGTGTTTCTCCAG 57.228 47.619 0.00 0.00 43.46 3.86
227 228 4.513406 AAACCTGGTTAGTGTTTCTCCA 57.487 40.909 13.37 0.00 0.00 3.86
228 229 5.240183 GGTAAAACCTGGTTAGTGTTTCTCC 59.760 44.000 13.37 6.04 34.73 3.71
229 230 5.824097 TGGTAAAACCTGGTTAGTGTTTCTC 59.176 40.000 13.37 0.98 39.58 2.87
230 231 5.757988 TGGTAAAACCTGGTTAGTGTTTCT 58.242 37.500 13.37 0.00 39.58 2.52
231 232 6.453926 TTGGTAAAACCTGGTTAGTGTTTC 57.546 37.500 13.37 1.41 39.58 2.78
232 233 6.628621 GCTTTGGTAAAACCTGGTTAGTGTTT 60.629 38.462 13.37 5.61 39.58 2.83
233 234 5.163488 GCTTTGGTAAAACCTGGTTAGTGTT 60.163 40.000 13.37 5.99 39.58 3.32
234 235 4.340097 GCTTTGGTAAAACCTGGTTAGTGT 59.660 41.667 13.37 1.59 39.58 3.55
235 236 4.261867 GGCTTTGGTAAAACCTGGTTAGTG 60.262 45.833 13.37 0.00 39.58 2.74
236 237 3.893200 GGCTTTGGTAAAACCTGGTTAGT 59.107 43.478 13.37 6.71 39.58 2.24
237 238 4.149598 AGGCTTTGGTAAAACCTGGTTAG 58.850 43.478 13.37 5.72 39.58 2.34
238 239 4.187506 AGGCTTTGGTAAAACCTGGTTA 57.812 40.909 13.37 0.00 39.58 2.85
239 240 3.040655 AGGCTTTGGTAAAACCTGGTT 57.959 42.857 6.18 6.18 39.58 3.67
240 241 2.767644 AGGCTTTGGTAAAACCTGGT 57.232 45.000 0.00 0.00 39.58 4.00
241 242 5.738619 AAATAGGCTTTGGTAAAACCTGG 57.261 39.130 6.52 0.00 39.58 4.45
242 243 6.993079 AGAAAATAGGCTTTGGTAAAACCTG 58.007 36.000 6.52 0.00 39.58 4.00
243 244 7.612065 AAGAAAATAGGCTTTGGTAAAACCT 57.388 32.000 0.00 2.28 39.58 3.50
244 245 8.083462 CAAAGAAAATAGGCTTTGGTAAAACC 57.917 34.615 0.00 0.00 44.37 3.27
252 253 7.441836 AGGTTTACCAAAGAAAATAGGCTTTG 58.558 34.615 0.00 0.00 46.46 2.77
253 254 7.612065 AGGTTTACCAAAGAAAATAGGCTTT 57.388 32.000 0.00 0.00 38.89 3.51
254 255 7.396339 CCTAGGTTTACCAAAGAAAATAGGCTT 59.604 37.037 0.00 0.00 38.89 4.35
255 256 6.890268 CCTAGGTTTACCAAAGAAAATAGGCT 59.110 38.462 0.00 0.00 38.89 4.58
256 257 6.662234 ACCTAGGTTTACCAAAGAAAATAGGC 59.338 38.462 9.21 0.00 38.89 3.93
257 258 9.916360 ATACCTAGGTTTACCAAAGAAAATAGG 57.084 33.333 22.11 3.81 38.89 2.57
262 263 9.643735 TGAAAATACCTAGGTTTACCAAAGAAA 57.356 29.630 22.11 0.00 38.89 2.52
263 264 9.070179 GTGAAAATACCTAGGTTTACCAAAGAA 57.930 33.333 22.11 0.00 38.89 2.52
264 265 7.666804 GGTGAAAATACCTAGGTTTACCAAAGA 59.333 37.037 22.11 0.00 37.74 2.52
265 266 7.361457 CGGTGAAAATACCTAGGTTTACCAAAG 60.361 40.741 22.11 2.36 38.62 2.77
266 267 6.430616 CGGTGAAAATACCTAGGTTTACCAAA 59.569 38.462 22.11 0.00 38.62 3.28
267 268 5.939296 CGGTGAAAATACCTAGGTTTACCAA 59.061 40.000 22.11 0.00 38.62 3.67
268 269 5.248020 TCGGTGAAAATACCTAGGTTTACCA 59.752 40.000 22.11 9.46 38.62 3.25
269 270 5.733676 TCGGTGAAAATACCTAGGTTTACC 58.266 41.667 22.11 16.57 38.62 2.85
270 271 6.633856 TCTCGGTGAAAATACCTAGGTTTAC 58.366 40.000 22.11 8.71 38.62 2.01
271 272 6.628844 GCTCTCGGTGAAAATACCTAGGTTTA 60.629 42.308 22.11 2.57 38.62 2.01
272 273 5.731591 CTCTCGGTGAAAATACCTAGGTTT 58.268 41.667 22.11 9.84 38.62 3.27
273 274 4.382793 GCTCTCGGTGAAAATACCTAGGTT 60.383 45.833 22.11 0.40 38.62 3.50
274 275 3.132467 GCTCTCGGTGAAAATACCTAGGT 59.868 47.826 20.57 20.57 38.62 3.08
275 276 3.385111 AGCTCTCGGTGAAAATACCTAGG 59.615 47.826 7.41 7.41 38.62 3.02
276 277 4.657436 AGCTCTCGGTGAAAATACCTAG 57.343 45.455 0.00 0.00 38.62 3.02
277 278 4.464951 TGAAGCTCTCGGTGAAAATACCTA 59.535 41.667 0.00 0.00 38.62 3.08
278 279 3.260884 TGAAGCTCTCGGTGAAAATACCT 59.739 43.478 0.00 0.00 38.62 3.08
279 280 3.596214 TGAAGCTCTCGGTGAAAATACC 58.404 45.455 0.00 0.00 37.37 2.73
280 281 4.327627 GTCTGAAGCTCTCGGTGAAAATAC 59.672 45.833 0.00 0.00 0.00 1.89
281 282 4.220821 AGTCTGAAGCTCTCGGTGAAAATA 59.779 41.667 0.00 0.00 0.00 1.40
282 283 3.007398 AGTCTGAAGCTCTCGGTGAAAAT 59.993 43.478 0.00 0.00 0.00 1.82
283 284 2.365617 AGTCTGAAGCTCTCGGTGAAAA 59.634 45.455 0.00 0.00 0.00 2.29
284 285 1.964223 AGTCTGAAGCTCTCGGTGAAA 59.036 47.619 0.00 0.00 0.00 2.69
285 286 1.542030 GAGTCTGAAGCTCTCGGTGAA 59.458 52.381 0.00 0.00 0.00 3.18
286 287 1.169577 GAGTCTGAAGCTCTCGGTGA 58.830 55.000 0.00 0.00 0.00 4.02
287 288 0.884514 TGAGTCTGAAGCTCTCGGTG 59.115 55.000 0.00 0.00 34.30 4.94
288 289 1.621992 TTGAGTCTGAAGCTCTCGGT 58.378 50.000 0.00 0.00 34.30 4.69
289 290 2.481104 GGATTGAGTCTGAAGCTCTCGG 60.481 54.545 0.00 0.00 34.30 4.63
290 291 2.481104 GGGATTGAGTCTGAAGCTCTCG 60.481 54.545 0.00 0.00 34.30 4.04
291 292 2.499289 TGGGATTGAGTCTGAAGCTCTC 59.501 50.000 0.00 0.00 34.30 3.20
292 293 2.544721 TGGGATTGAGTCTGAAGCTCT 58.455 47.619 0.00 0.00 34.30 4.09
293 294 3.006247 GTTGGGATTGAGTCTGAAGCTC 58.994 50.000 0.00 0.00 0.00 4.09
294 295 2.641815 AGTTGGGATTGAGTCTGAAGCT 59.358 45.455 0.00 0.00 0.00 3.74
295 296 3.064900 AGTTGGGATTGAGTCTGAAGC 57.935 47.619 0.00 0.00 0.00 3.86
296 297 5.641209 CAGTTAGTTGGGATTGAGTCTGAAG 59.359 44.000 0.00 0.00 0.00 3.02
297 298 5.071788 ACAGTTAGTTGGGATTGAGTCTGAA 59.928 40.000 0.00 0.00 0.00 3.02
298 299 4.593206 ACAGTTAGTTGGGATTGAGTCTGA 59.407 41.667 0.00 0.00 0.00 3.27
299 300 4.899502 ACAGTTAGTTGGGATTGAGTCTG 58.100 43.478 0.00 0.00 0.00 3.51
300 301 5.568620 AACAGTTAGTTGGGATTGAGTCT 57.431 39.130 0.00 0.00 39.49 3.24
301 302 5.763204 TGAAACAGTTAGTTGGGATTGAGTC 59.237 40.000 0.00 0.00 41.19 3.36
302 303 5.690865 TGAAACAGTTAGTTGGGATTGAGT 58.309 37.500 0.00 0.00 41.19 3.41
303 304 6.824305 ATGAAACAGTTAGTTGGGATTGAG 57.176 37.500 0.00 0.00 41.19 3.02
304 305 6.516527 GCAATGAAACAGTTAGTTGGGATTGA 60.517 38.462 0.00 0.00 41.19 2.57
305 306 5.634859 GCAATGAAACAGTTAGTTGGGATTG 59.365 40.000 0.00 0.00 41.19 2.67
306 307 5.304101 TGCAATGAAACAGTTAGTTGGGATT 59.696 36.000 0.00 0.00 41.19 3.01
307 308 4.832266 TGCAATGAAACAGTTAGTTGGGAT 59.168 37.500 0.00 0.00 41.19 3.85
308 309 4.211125 TGCAATGAAACAGTTAGTTGGGA 58.789 39.130 0.00 0.00 41.19 4.37
309 310 4.582701 TGCAATGAAACAGTTAGTTGGG 57.417 40.909 0.00 0.00 41.19 4.12
310 311 6.449698 AGAATGCAATGAAACAGTTAGTTGG 58.550 36.000 0.00 0.00 41.19 3.77
311 312 7.149080 CGAAGAATGCAATGAAACAGTTAGTTG 60.149 37.037 0.00 0.00 41.19 3.16
312 313 6.857964 CGAAGAATGCAATGAAACAGTTAGTT 59.142 34.615 0.00 0.00 43.89 2.24
313 314 6.204688 TCGAAGAATGCAATGAAACAGTTAGT 59.795 34.615 0.00 0.00 0.00 2.24
314 315 6.602179 TCGAAGAATGCAATGAAACAGTTAG 58.398 36.000 0.00 0.00 0.00 2.34
315 316 6.552859 TCGAAGAATGCAATGAAACAGTTA 57.447 33.333 0.00 0.00 0.00 2.24
316 317 5.437289 TCGAAGAATGCAATGAAACAGTT 57.563 34.783 0.00 0.00 0.00 3.16
317 318 5.048504 ACATCGAAGAATGCAATGAAACAGT 60.049 36.000 0.00 0.00 43.58 3.55
318 319 5.396484 ACATCGAAGAATGCAATGAAACAG 58.604 37.500 0.00 0.00 43.58 3.16
319 320 5.375417 ACATCGAAGAATGCAATGAAACA 57.625 34.783 0.00 0.00 43.58 2.83
320 321 6.183360 GGAAACATCGAAGAATGCAATGAAAC 60.183 38.462 0.00 0.00 43.58 2.78
321 322 5.863397 GGAAACATCGAAGAATGCAATGAAA 59.137 36.000 0.00 0.00 43.58 2.69
322 323 5.183713 AGGAAACATCGAAGAATGCAATGAA 59.816 36.000 0.00 0.00 43.58 2.57
323 324 4.701651 AGGAAACATCGAAGAATGCAATGA 59.298 37.500 0.00 0.00 43.58 2.57
324 325 4.990257 AGGAAACATCGAAGAATGCAATG 58.010 39.130 0.00 0.00 43.58 2.82
325 326 4.701651 TGAGGAAACATCGAAGAATGCAAT 59.298 37.500 0.00 0.00 43.58 3.56
326 327 4.071423 TGAGGAAACATCGAAGAATGCAA 58.929 39.130 0.00 0.00 43.58 4.08
327 328 3.436704 GTGAGGAAACATCGAAGAATGCA 59.563 43.478 0.00 0.00 43.58 3.96
328 329 3.436704 TGTGAGGAAACATCGAAGAATGC 59.563 43.478 0.00 0.00 43.58 3.56
329 330 5.804173 GATGTGAGGAAACATCGAAGAATG 58.196 41.667 0.00 0.00 45.04 2.67
338 339 5.255397 TGGTAAAGGATGTGAGGAAACAT 57.745 39.130 0.00 0.00 43.47 2.71
339 340 4.715534 TGGTAAAGGATGTGAGGAAACA 57.284 40.909 0.00 0.00 0.00 2.83
340 341 5.768164 TCTTTGGTAAAGGATGTGAGGAAAC 59.232 40.000 1.88 0.00 39.01 2.78
341 342 5.947663 TCTTTGGTAAAGGATGTGAGGAAA 58.052 37.500 1.88 0.00 39.01 3.13
342 343 5.576563 TCTTTGGTAAAGGATGTGAGGAA 57.423 39.130 1.88 0.00 39.01 3.36
343 344 5.576563 TTCTTTGGTAAAGGATGTGAGGA 57.423 39.130 1.88 0.00 39.01 3.71
344 345 6.648879 TTTTCTTTGGTAAAGGATGTGAGG 57.351 37.500 1.88 0.00 39.01 3.86
345 346 9.231297 TCTATTTTCTTTGGTAAAGGATGTGAG 57.769 33.333 1.88 0.00 39.01 3.51
346 347 9.581289 TTCTATTTTCTTTGGTAAAGGATGTGA 57.419 29.630 1.88 0.00 39.01 3.58
347 348 9.846248 CTTCTATTTTCTTTGGTAAAGGATGTG 57.154 33.333 1.88 0.00 39.01 3.21
348 349 9.807921 TCTTCTATTTTCTTTGGTAAAGGATGT 57.192 29.630 1.88 0.00 39.01 3.06
351 352 9.862149 AAGTCTTCTATTTTCTTTGGTAAAGGA 57.138 29.630 1.88 0.00 39.01 3.36
369 370 9.007901 CAAAAGGTCAATCTCAATAAGTCTTCT 57.992 33.333 0.00 0.00 0.00 2.85
370 371 8.787852 ACAAAAGGTCAATCTCAATAAGTCTTC 58.212 33.333 0.00 0.00 0.00 2.87
371 372 8.697507 ACAAAAGGTCAATCTCAATAAGTCTT 57.302 30.769 0.00 0.00 0.00 3.01
372 373 8.329203 GACAAAAGGTCAATCTCAATAAGTCT 57.671 34.615 0.00 0.00 46.19 3.24
387 388 3.149196 TGAAGCATCTGGACAAAAGGTC 58.851 45.455 0.00 0.00 46.20 3.85
388 389 3.228188 TGAAGCATCTGGACAAAAGGT 57.772 42.857 0.00 0.00 0.00 3.50
389 390 3.675228 GCATGAAGCATCTGGACAAAAGG 60.675 47.826 0.00 0.00 44.79 3.11
390 391 3.508762 GCATGAAGCATCTGGACAAAAG 58.491 45.455 0.00 0.00 44.79 2.27
391 392 3.581024 GCATGAAGCATCTGGACAAAA 57.419 42.857 0.00 0.00 44.79 2.44
403 404 3.626670 AGAAGTATGAGCAAGCATGAAGC 59.373 43.478 0.00 0.00 46.19 3.86
404 405 5.814764 AAGAAGTATGAGCAAGCATGAAG 57.185 39.130 0.00 0.00 0.00 3.02
405 406 7.105588 TCTTAAGAAGTATGAGCAAGCATGAA 58.894 34.615 1.68 0.00 0.00 2.57
406 407 6.643388 TCTTAAGAAGTATGAGCAAGCATGA 58.357 36.000 1.68 0.00 0.00 3.07
407 408 6.915544 TCTTAAGAAGTATGAGCAAGCATG 57.084 37.500 1.68 0.00 0.00 4.06
408 409 8.428063 AGTATCTTAAGAAGTATGAGCAAGCAT 58.572 33.333 9.71 0.00 0.00 3.79
409 410 7.786030 AGTATCTTAAGAAGTATGAGCAAGCA 58.214 34.615 9.71 0.00 0.00 3.91
410 411 9.187455 GTAGTATCTTAAGAAGTATGAGCAAGC 57.813 37.037 9.71 0.00 0.00 4.01
413 414 9.628500 TGAGTAGTATCTTAAGAAGTATGAGCA 57.372 33.333 9.71 0.01 0.00 4.26
432 433 9.461312 GAGGATAGTATGATTCATCTGAGTAGT 57.539 37.037 1.55 0.00 0.00 2.73
433 434 8.902806 GGAGGATAGTATGATTCATCTGAGTAG 58.097 40.741 1.55 0.00 0.00 2.57
434 435 8.619281 AGGAGGATAGTATGATTCATCTGAGTA 58.381 37.037 1.55 0.00 0.00 2.59
435 436 7.477864 AGGAGGATAGTATGATTCATCTGAGT 58.522 38.462 1.55 0.00 0.00 3.41
436 437 7.835682 AGAGGAGGATAGTATGATTCATCTGAG 59.164 40.741 1.55 0.00 0.00 3.35
437 438 7.614974 CAGAGGAGGATAGTATGATTCATCTGA 59.385 40.741 16.86 0.00 42.69 3.27
438 439 7.631161 GCAGAGGAGGATAGTATGATTCATCTG 60.631 44.444 17.20 17.20 42.84 2.90
439 440 6.380846 GCAGAGGAGGATAGTATGATTCATCT 59.619 42.308 1.55 3.54 0.00 2.90
440 441 6.380846 AGCAGAGGAGGATAGTATGATTCATC 59.619 42.308 1.55 0.00 0.00 2.92
441 442 6.262980 AGCAGAGGAGGATAGTATGATTCAT 58.737 40.000 4.28 4.28 0.00 2.57
442 443 5.649265 AGCAGAGGAGGATAGTATGATTCA 58.351 41.667 0.00 0.00 0.00 2.57
443 444 6.350949 GGAAGCAGAGGAGGATAGTATGATTC 60.351 46.154 0.00 0.00 32.44 2.52
444 445 5.483583 GGAAGCAGAGGAGGATAGTATGATT 59.516 44.000 0.00 0.00 0.00 2.57
445 446 5.022787 GGAAGCAGAGGAGGATAGTATGAT 58.977 45.833 0.00 0.00 0.00 2.45
446 447 4.140924 TGGAAGCAGAGGAGGATAGTATGA 60.141 45.833 0.00 0.00 0.00 2.15
447 448 4.155709 TGGAAGCAGAGGAGGATAGTATG 58.844 47.826 0.00 0.00 0.00 2.39
448 449 4.477536 TGGAAGCAGAGGAGGATAGTAT 57.522 45.455 0.00 0.00 0.00 2.12
449 450 3.973472 TGGAAGCAGAGGAGGATAGTA 57.027 47.619 0.00 0.00 0.00 1.82
450 451 2.856760 TGGAAGCAGAGGAGGATAGT 57.143 50.000 0.00 0.00 0.00 2.12
451 452 5.815233 TTTATGGAAGCAGAGGAGGATAG 57.185 43.478 0.00 0.00 0.00 2.08
452 453 6.069673 TGTTTTTATGGAAGCAGAGGAGGATA 60.070 38.462 0.00 0.00 0.00 2.59
453 454 5.196695 GTTTTTATGGAAGCAGAGGAGGAT 58.803 41.667 0.00 0.00 0.00 3.24
454 455 4.042809 TGTTTTTATGGAAGCAGAGGAGGA 59.957 41.667 0.00 0.00 0.00 3.71
455 456 4.335416 TGTTTTTATGGAAGCAGAGGAGG 58.665 43.478 0.00 0.00 0.00 4.30
456 457 5.964958 TTGTTTTTATGGAAGCAGAGGAG 57.035 39.130 0.00 0.00 0.00 3.69
457 458 5.774690 ACATTGTTTTTATGGAAGCAGAGGA 59.225 36.000 0.00 0.00 0.00 3.71
458 459 6.029346 ACATTGTTTTTATGGAAGCAGAGG 57.971 37.500 0.00 0.00 0.00 3.69
459 460 9.643693 AATAACATTGTTTTTATGGAAGCAGAG 57.356 29.630 7.45 0.00 0.00 3.35
484 485 8.817100 CGTTACACATCTTCTATTTGCTGATAA 58.183 33.333 0.00 0.00 0.00 1.75
485 486 7.979537 ACGTTACACATCTTCTATTTGCTGATA 59.020 33.333 0.00 0.00 0.00 2.15
486 487 6.818644 ACGTTACACATCTTCTATTTGCTGAT 59.181 34.615 0.00 0.00 0.00 2.90
487 488 6.090763 CACGTTACACATCTTCTATTTGCTGA 59.909 38.462 0.00 0.00 0.00 4.26
488 489 6.090763 TCACGTTACACATCTTCTATTTGCTG 59.909 38.462 0.00 0.00 0.00 4.41
489 490 6.163476 TCACGTTACACATCTTCTATTTGCT 58.837 36.000 0.00 0.00 0.00 3.91
490 491 6.403333 TCACGTTACACATCTTCTATTTGC 57.597 37.500 0.00 0.00 0.00 3.68
491 492 6.036083 CCCTCACGTTACACATCTTCTATTTG 59.964 42.308 0.00 0.00 0.00 2.32
492 493 6.106673 CCCTCACGTTACACATCTTCTATTT 58.893 40.000 0.00 0.00 0.00 1.40
493 494 5.187186 ACCCTCACGTTACACATCTTCTATT 59.813 40.000 0.00 0.00 0.00 1.73
494 495 4.710375 ACCCTCACGTTACACATCTTCTAT 59.290 41.667 0.00 0.00 0.00 1.98
495 496 4.084287 ACCCTCACGTTACACATCTTCTA 58.916 43.478 0.00 0.00 0.00 2.10
496 497 2.897969 ACCCTCACGTTACACATCTTCT 59.102 45.455 0.00 0.00 0.00 2.85
497 498 3.314541 ACCCTCACGTTACACATCTTC 57.685 47.619 0.00 0.00 0.00 2.87
498 499 3.181458 ACAACCCTCACGTTACACATCTT 60.181 43.478 0.00 0.00 0.00 2.40
499 500 2.367567 ACAACCCTCACGTTACACATCT 59.632 45.455 0.00 0.00 0.00 2.90
500 501 2.735134 GACAACCCTCACGTTACACATC 59.265 50.000 0.00 0.00 0.00 3.06
501 502 2.549349 GGACAACCCTCACGTTACACAT 60.549 50.000 0.00 0.00 0.00 3.21
502 503 1.202557 GGACAACCCTCACGTTACACA 60.203 52.381 0.00 0.00 0.00 3.72
503 504 1.505425 GGACAACCCTCACGTTACAC 58.495 55.000 0.00 0.00 0.00 2.90
504 505 3.993382 GGACAACCCTCACGTTACA 57.007 52.632 0.00 0.00 0.00 2.41
515 516 0.392595 GATGTTCGGGAGGGACAACC 60.393 60.000 0.00 0.00 40.67 3.77
516 517 0.323629 TGATGTTCGGGAGGGACAAC 59.676 55.000 0.00 0.00 31.98 3.32
517 518 0.323629 GTGATGTTCGGGAGGGACAA 59.676 55.000 0.00 0.00 31.98 3.18
518 519 1.550130 GGTGATGTTCGGGAGGGACA 61.550 60.000 0.00 0.00 0.00 4.02
519 520 1.221021 GGTGATGTTCGGGAGGGAC 59.779 63.158 0.00 0.00 0.00 4.46
520 521 1.993391 GGGTGATGTTCGGGAGGGA 60.993 63.158 0.00 0.00 0.00 4.20
521 522 2.590092 GGGTGATGTTCGGGAGGG 59.410 66.667 0.00 0.00 0.00 4.30
522 523 1.562672 AAGGGGTGATGTTCGGGAGG 61.563 60.000 0.00 0.00 0.00 4.30
523 524 0.328258 AAAGGGGTGATGTTCGGGAG 59.672 55.000 0.00 0.00 0.00 4.30
524 525 0.774908 AAAAGGGGTGATGTTCGGGA 59.225 50.000 0.00 0.00 0.00 5.14
525 526 2.500392 TAAAAGGGGTGATGTTCGGG 57.500 50.000 0.00 0.00 0.00 5.14
526 527 4.219725 ACAAATAAAAGGGGTGATGTTCGG 59.780 41.667 0.00 0.00 0.00 4.30
527 528 5.385509 ACAAATAAAAGGGGTGATGTTCG 57.614 39.130 0.00 0.00 0.00 3.95
528 529 6.521162 ACAACAAATAAAAGGGGTGATGTTC 58.479 36.000 0.00 0.00 0.00 3.18
529 530 6.493189 ACAACAAATAAAAGGGGTGATGTT 57.507 33.333 0.00 0.00 0.00 2.71
530 531 6.463755 GGAACAACAAATAAAAGGGGTGATGT 60.464 38.462 0.00 0.00 0.00 3.06
531 532 5.931724 GGAACAACAAATAAAAGGGGTGATG 59.068 40.000 0.00 0.00 0.00 3.07
532 533 5.843969 AGGAACAACAAATAAAAGGGGTGAT 59.156 36.000 0.00 0.00 0.00 3.06
533 534 5.069781 CAGGAACAACAAATAAAAGGGGTGA 59.930 40.000 0.00 0.00 0.00 4.02
534 535 5.296748 CAGGAACAACAAATAAAAGGGGTG 58.703 41.667 0.00 0.00 0.00 4.61
535 536 4.202315 GCAGGAACAACAAATAAAAGGGGT 60.202 41.667 0.00 0.00 0.00 4.95
536 537 4.040339 AGCAGGAACAACAAATAAAAGGGG 59.960 41.667 0.00 0.00 0.00 4.79
537 538 4.990426 CAGCAGGAACAACAAATAAAAGGG 59.010 41.667 0.00 0.00 0.00 3.95
538 539 5.691754 GTCAGCAGGAACAACAAATAAAAGG 59.308 40.000 0.00 0.00 0.00 3.11
539 540 6.272318 TGTCAGCAGGAACAACAAATAAAAG 58.728 36.000 0.00 0.00 0.00 2.27
540 541 6.214191 TGTCAGCAGGAACAACAAATAAAA 57.786 33.333 0.00 0.00 0.00 1.52
541 542 5.843673 TGTCAGCAGGAACAACAAATAAA 57.156 34.783 0.00 0.00 0.00 1.40
542 543 6.403866 AATGTCAGCAGGAACAACAAATAA 57.596 33.333 0.00 0.00 0.00 1.40
543 544 6.403866 AAATGTCAGCAGGAACAACAAATA 57.596 33.333 0.00 0.00 0.00 1.40
544 545 4.942761 AATGTCAGCAGGAACAACAAAT 57.057 36.364 0.00 0.00 0.00 2.32
545 546 4.734398 AAATGTCAGCAGGAACAACAAA 57.266 36.364 0.00 0.00 0.00 2.83
546 547 4.081752 ACAAAATGTCAGCAGGAACAACAA 60.082 37.500 0.00 0.00 0.00 2.83
547 548 3.446873 ACAAAATGTCAGCAGGAACAACA 59.553 39.130 0.00 0.00 0.00 3.33
548 549 4.045636 ACAAAATGTCAGCAGGAACAAC 57.954 40.909 0.00 0.00 0.00 3.32
549 550 4.734398 AACAAAATGTCAGCAGGAACAA 57.266 36.364 0.00 0.00 0.00 2.83
550 551 4.734398 AAACAAAATGTCAGCAGGAACA 57.266 36.364 0.00 0.00 0.00 3.18
551 552 4.675114 CGTAAACAAAATGTCAGCAGGAAC 59.325 41.667 0.00 0.00 0.00 3.62
552 553 4.576873 TCGTAAACAAAATGTCAGCAGGAA 59.423 37.500 0.00 0.00 0.00 3.36
553 554 4.130857 TCGTAAACAAAATGTCAGCAGGA 58.869 39.130 0.00 0.00 0.00 3.86
554 555 4.213270 TCTCGTAAACAAAATGTCAGCAGG 59.787 41.667 0.00 0.00 0.00 4.85
555 556 5.342806 TCTCGTAAACAAAATGTCAGCAG 57.657 39.130 0.00 0.00 0.00 4.24
556 557 4.319477 GCTCTCGTAAACAAAATGTCAGCA 60.319 41.667 0.00 0.00 0.00 4.41
557 558 4.151798 GCTCTCGTAAACAAAATGTCAGC 58.848 43.478 0.00 0.00 0.00 4.26
558 559 4.666655 CGGCTCTCGTAAACAAAATGTCAG 60.667 45.833 0.00 0.00 0.00 3.51
559 560 3.185594 CGGCTCTCGTAAACAAAATGTCA 59.814 43.478 0.00 0.00 0.00 3.58
560 561 3.430895 TCGGCTCTCGTAAACAAAATGTC 59.569 43.478 0.00 0.00 40.32 3.06
561 562 3.395639 TCGGCTCTCGTAAACAAAATGT 58.604 40.909 0.00 0.00 40.32 2.71
562 563 4.398549 TTCGGCTCTCGTAAACAAAATG 57.601 40.909 0.00 0.00 40.32 2.32
563 564 5.427036 TTTTCGGCTCTCGTAAACAAAAT 57.573 34.783 0.00 0.00 40.32 1.82
564 565 4.879104 TTTTCGGCTCTCGTAAACAAAA 57.121 36.364 0.00 0.00 40.32 2.44
565 566 4.094590 TGTTTTTCGGCTCTCGTAAACAAA 59.905 37.500 13.94 0.00 43.57 2.83
566 567 3.622163 TGTTTTTCGGCTCTCGTAAACAA 59.378 39.130 13.94 4.57 43.57 2.83
567 568 3.196463 TGTTTTTCGGCTCTCGTAAACA 58.804 40.909 13.02 13.02 43.90 2.83
568 569 3.865224 TGTTTTTCGGCTCTCGTAAAC 57.135 42.857 0.00 0.00 37.74 2.01
569 570 4.083696 GGAATGTTTTTCGGCTCTCGTAAA 60.084 41.667 0.00 0.00 40.32 2.01
570 571 3.434299 GGAATGTTTTTCGGCTCTCGTAA 59.566 43.478 0.00 0.00 40.32 3.18
571 572 2.997986 GGAATGTTTTTCGGCTCTCGTA 59.002 45.455 0.00 0.00 40.32 3.43
572 573 1.804748 GGAATGTTTTTCGGCTCTCGT 59.195 47.619 0.00 0.00 40.32 4.18
573 574 1.804151 TGGAATGTTTTTCGGCTCTCG 59.196 47.619 0.00 0.00 40.90 4.04
574 575 2.412847 CGTGGAATGTTTTTCGGCTCTC 60.413 50.000 0.00 0.00 0.00 3.20
575 576 1.535462 CGTGGAATGTTTTTCGGCTCT 59.465 47.619 0.00 0.00 0.00 4.09
576 577 1.963747 CGTGGAATGTTTTTCGGCTC 58.036 50.000 0.00 0.00 0.00 4.70
577 578 0.039527 GCGTGGAATGTTTTTCGGCT 60.040 50.000 0.00 0.00 0.00 5.52
578 579 0.318275 TGCGTGGAATGTTTTTCGGC 60.318 50.000 0.00 0.00 0.00 5.54
579 580 2.126914 TTGCGTGGAATGTTTTTCGG 57.873 45.000 0.00 0.00 0.00 4.30
580 581 4.707210 ATTTTGCGTGGAATGTTTTTCG 57.293 36.364 0.00 0.00 0.00 3.46
581 582 7.401484 TTCTATTTTGCGTGGAATGTTTTTC 57.599 32.000 0.00 0.00 0.00 2.29
582 583 7.278868 TGTTTCTATTTTGCGTGGAATGTTTTT 59.721 29.630 0.00 0.00 0.00 1.94
583 584 6.758886 TGTTTCTATTTTGCGTGGAATGTTTT 59.241 30.769 0.00 0.00 0.00 2.43
584 585 6.276847 TGTTTCTATTTTGCGTGGAATGTTT 58.723 32.000 0.00 0.00 0.00 2.83
585 586 5.837437 TGTTTCTATTTTGCGTGGAATGTT 58.163 33.333 0.00 0.00 0.00 2.71
586 587 5.446143 TGTTTCTATTTTGCGTGGAATGT 57.554 34.783 0.00 0.00 0.00 2.71
587 588 6.761731 TTTGTTTCTATTTTGCGTGGAATG 57.238 33.333 0.00 0.00 0.00 2.67
588 589 6.423604 CCTTTTGTTTCTATTTTGCGTGGAAT 59.576 34.615 0.00 0.00 0.00 3.01
589 590 5.751028 CCTTTTGTTTCTATTTTGCGTGGAA 59.249 36.000 0.00 0.00 0.00 3.53
590 591 5.285651 CCTTTTGTTTCTATTTTGCGTGGA 58.714 37.500 0.00 0.00 0.00 4.02
591 592 4.447389 CCCTTTTGTTTCTATTTTGCGTGG 59.553 41.667 0.00 0.00 0.00 4.94
592 593 4.447389 CCCCTTTTGTTTCTATTTTGCGTG 59.553 41.667 0.00 0.00 0.00 5.34
593 594 4.100344 ACCCCTTTTGTTTCTATTTTGCGT 59.900 37.500 0.00 0.00 0.00 5.24
594 595 4.627058 ACCCCTTTTGTTTCTATTTTGCG 58.373 39.130 0.00 0.00 0.00 4.85
595 596 8.615878 ATTAACCCCTTTTGTTTCTATTTTGC 57.384 30.769 0.00 0.00 0.00 3.68
605 606 9.062524 GCAAAAGAATAATTAACCCCTTTTGTT 57.937 29.630 25.20 7.52 45.68 2.83
606 607 7.663905 GGCAAAAGAATAATTAACCCCTTTTGT 59.336 33.333 25.20 3.32 45.68 2.83
607 608 7.120579 GGGCAAAAGAATAATTAACCCCTTTTG 59.879 37.037 23.17 23.17 46.20 2.44
608 609 7.018149 AGGGCAAAAGAATAATTAACCCCTTTT 59.982 33.333 0.00 0.00 35.69 2.27
609 610 6.503924 AGGGCAAAAGAATAATTAACCCCTTT 59.496 34.615 0.00 0.00 35.69 3.11
610 611 6.029431 AGGGCAAAAGAATAATTAACCCCTT 58.971 36.000 0.00 0.00 35.69 3.95
611 612 5.599751 AGGGCAAAAGAATAATTAACCCCT 58.400 37.500 0.00 0.00 35.29 4.79
624 625 0.550914 ACACCACTGAGGGCAAAAGA 59.449 50.000 0.00 0.00 43.89 2.52
717 718 1.344438 AGATGGCAGAGTTCACGACAA 59.656 47.619 0.00 0.00 0.00 3.18
718 719 0.969149 AGATGGCAGAGTTCACGACA 59.031 50.000 0.00 0.00 0.00 4.35
719 720 1.634702 GAGATGGCAGAGTTCACGAC 58.365 55.000 0.00 0.00 0.00 4.34
734 735 3.383162 AGGTTGACCTGACGGAGAT 57.617 52.632 0.97 0.00 46.55 2.75
996 1060 3.560025 GGAAGCTTGAGGAAGACATGGAA 60.560 47.826 2.10 0.00 0.00 3.53
1087 1151 4.143333 CCTCCGATCAACGCCCGT 62.143 66.667 0.00 0.00 41.07 5.28
1607 1673 8.833231 TCAACATTTAAACAACTTTGACCAAA 57.167 26.923 0.00 0.00 0.00 3.28
1782 1856 1.683917 CTAGTCGGCACTTGGCTCTAT 59.316 52.381 0.90 0.00 44.01 1.98
1798 1872 2.092914 GCAGTTGGCCCATTAGTCTAGT 60.093 50.000 0.00 0.00 36.11 2.57
1917 2010 7.342799 TGGCTCTGGAATAATTCAATTAGCTTT 59.657 33.333 0.00 0.00 0.00 3.51
2041 2138 2.557924 TGAGGCACATTTTCCATGACAC 59.442 45.455 0.00 0.00 0.00 3.67
2064 2161 3.581332 CCAGGTGTAAACCTCTACCAGAA 59.419 47.826 0.00 0.00 38.22 3.02
2170 2271 0.605589 CCCAGCCGCACCAATTTTTA 59.394 50.000 0.00 0.00 0.00 1.52
2201 2302 2.030562 AGAAACCCACGCAGTCCG 59.969 61.111 0.00 0.00 41.61 4.79
2206 2307 4.555709 ACGCCAGAAACCCACGCA 62.556 61.111 0.00 0.00 0.00 5.24
2217 2318 3.499737 CGCAGCCCTAAACGCCAG 61.500 66.667 0.00 0.00 0.00 4.85
2254 2355 3.222603 ACCCATGTCAAAGTCTTTCCAC 58.777 45.455 0.00 0.00 0.00 4.02
2277 2378 8.117312 GGTCTCACTATATATACCTTCCTTCCT 58.883 40.741 0.00 0.00 0.00 3.36
2292 2393 6.588756 GTGAAAACATTCACGGTCTCACTATA 59.411 38.462 6.00 0.00 41.42 1.31
2338 2450 6.175712 TCCAAAATTTCAGTGCAAAACAAC 57.824 33.333 0.00 0.00 0.00 3.32
2367 2479 1.535462 GGCAGTGCAACATACGTTTCT 59.465 47.619 18.61 0.00 41.43 2.52
2463 2584 6.494835 GCCCAAACATATCATTTCTTCCCTAT 59.505 38.462 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.