Multiple sequence alignment - TraesCS6D01G235000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G235000 chr6D 100.000 3406 0 0 1 3406 329883579 329886984 0.000000e+00 6290.0
1 TraesCS6D01G235000 chr6D 91.506 259 11 2 654 911 454687421 454687173 2.520000e-91 346.0
2 TraesCS6D01G235000 chr6D 90.857 175 12 3 311 481 389700705 389700531 7.350000e-57 231.0
3 TraesCS6D01G235000 chr6A 95.631 1442 51 5 922 2357 469109666 469111101 0.000000e+00 2303.0
4 TraesCS6D01G235000 chr6A 97.444 900 20 3 2508 3406 10982546 10983443 0.000000e+00 1531.0
5 TraesCS6D01G235000 chr6A 95.105 143 6 1 2364 2505 10982471 10982613 1.230000e-54 224.0
6 TraesCS6D01G235000 chr6B 95.179 1452 54 5 922 2364 490566191 490564747 0.000000e+00 2279.0
7 TraesCS6D01G235000 chr6B 94.872 312 15 1 1 312 490566845 490566535 1.420000e-133 486.0
8 TraesCS6D01G235000 chr2D 98.780 902 9 2 2506 3406 314051540 314052440 0.000000e+00 1604.0
9 TraesCS6D01G235000 chr2D 76.390 1025 187 45 1286 2290 517264649 517263660 5.070000e-138 501.0
10 TraesCS6D01G235000 chr2D 91.829 257 10 2 656 911 138290712 138290958 7.000000e-92 348.0
11 TraesCS6D01G235000 chr2D 88.764 267 16 9 648 910 414974746 414974490 7.090000e-82 315.0
12 TraesCS6D01G235000 chr2D 92.035 226 13 5 685 909 313713808 313713587 2.550000e-81 313.0
13 TraesCS6D01G235000 chr2D 88.372 258 18 6 656 911 63530463 63530216 1.990000e-77 300.0
14 TraesCS6D01G235000 chr2D 97.059 136 3 1 2370 2505 314051474 314051608 9.510000e-56 228.0
15 TraesCS6D01G235000 chr2D 84.865 185 17 3 639 823 39165707 39165880 3.490000e-40 176.0
16 TraesCS6D01G235000 chr7D 97.342 903 21 3 2506 3406 20959018 20959919 0.000000e+00 1531.0
17 TraesCS6D01G235000 chr7D 95.122 902 42 2 2506 3406 497570631 497569731 0.000000e+00 1421.0
18 TraesCS6D01G235000 chr7D 92.218 257 9 2 654 909 505594820 505595066 1.500000e-93 353.0
19 TraesCS6D01G235000 chr7D 90.385 260 13 6 654 911 353940329 353940578 7.040000e-87 331.0
20 TraesCS6D01G235000 chr7D 97.794 136 3 0 2370 2505 5591701 5591836 5.680000e-58 235.0
21 TraesCS6D01G235000 chr7D 96.296 135 5 0 2371 2505 20958953 20959087 4.420000e-54 222.0
22 TraesCS6D01G235000 chr7D 95.588 136 6 0 2370 2505 497570697 497570562 5.720000e-53 219.0
23 TraesCS6D01G235000 chr7D 83.929 56 9 0 1537 1592 626438717 626438772 2.000000e-03 54.7
24 TraesCS6D01G235000 chr1A 96.235 903 30 3 2506 3406 548462106 548461206 0.000000e+00 1476.0
25 TraesCS6D01G235000 chr1A 95.912 905 32 4 2506 3406 560369098 560370001 0.000000e+00 1461.0
26 TraesCS6D01G235000 chr1A 95.588 136 6 0 2370 2505 548462172 548462037 5.720000e-53 219.0
27 TraesCS6D01G235000 chr2A 96.013 903 32 3 2506 3406 733698373 733697473 0.000000e+00 1465.0
28 TraesCS6D01G235000 chr2A 76.147 1090 193 51 1224 2290 661585832 661584787 8.430000e-141 510.0
29 TraesCS6D01G235000 chr2A 88.889 171 9 2 653 823 513290633 513290473 5.760000e-48 202.0
30 TraesCS6D01G235000 chr5A 95.691 905 34 4 2506 3406 43568217 43567314 0.000000e+00 1450.0
31 TraesCS6D01G235000 chr5A 88.636 176 9 3 649 823 161328711 161328876 1.600000e-48 204.0
32 TraesCS6D01G235000 chr3A 95.238 903 38 4 2506 3406 724302999 724302100 0.000000e+00 1424.0
33 TraesCS6D01G235000 chr3A 97.059 136 4 0 2370 2505 724303065 724302930 2.640000e-56 230.0
34 TraesCS6D01G235000 chr2B 75.949 1027 179 48 1286 2290 609202243 609201263 1.850000e-127 466.0
35 TraesCS6D01G235000 chr2B 88.304 171 8 4 654 823 504788636 504788477 9.640000e-46 195.0
36 TraesCS6D01G235000 chr1D 92.636 258 8 2 656 912 442406815 442407062 8.990000e-96 361.0
37 TraesCS6D01G235000 chr1D 91.440 257 11 3 654 909 206575172 206574926 3.250000e-90 342.0
38 TraesCS6D01G235000 chr1D 91.813 171 12 1 308 476 196817846 196817676 1.580000e-58 237.0
39 TraesCS6D01G235000 chr1D 90.556 180 14 2 306 482 345368849 345368670 5.680000e-58 235.0
40 TraesCS6D01G235000 chr3D 90.980 255 12 2 656 909 42402319 42402075 1.960000e-87 333.0
41 TraesCS6D01G235000 chr5D 93.333 165 9 1 311 473 333098087 333097923 3.400000e-60 243.0
42 TraesCS6D01G235000 chr5D 92.262 168 11 1 308 473 274578009 274578176 1.580000e-58 237.0
43 TraesCS6D01G235000 chr4D 91.011 178 14 1 311 486 75782053 75782230 4.390000e-59 239.0
44 TraesCS6D01G235000 chr4D 92.216 167 11 1 309 473 93338208 93338042 5.680000e-58 235.0
45 TraesCS6D01G235000 chr3B 91.765 170 11 2 311 478 120617077 120616909 2.040000e-57 233.0
46 TraesCS6D01G235000 chr3B 95.588 136 5 1 2370 2505 39304738 39304872 2.060000e-52 217.0
47 TraesCS6D01G235000 chr5B 89.617 183 15 3 309 487 6397221 6397039 2.640000e-56 230.0
48 TraesCS6D01G235000 chr5B 94.643 56 3 0 649 704 208725471 208725526 1.680000e-13 87.9
49 TraesCS6D01G235000 chr4B 96.324 136 5 0 2370 2505 536849083 536848948 1.230000e-54 224.0
50 TraesCS6D01G235000 chr4A 83.051 177 19 4 648 823 453311285 453311119 2.120000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G235000 chr6D 329883579 329886984 3405 False 6290.0 6290 100.0000 1 3406 1 chr6D.!!$F1 3405
1 TraesCS6D01G235000 chr6A 469109666 469111101 1435 False 2303.0 2303 95.6310 922 2357 1 chr6A.!!$F1 1435
2 TraesCS6D01G235000 chr6A 10982471 10983443 972 False 877.5 1531 96.2745 2364 3406 2 chr6A.!!$F2 1042
3 TraesCS6D01G235000 chr6B 490564747 490566845 2098 True 1382.5 2279 95.0255 1 2364 2 chr6B.!!$R1 2363
4 TraesCS6D01G235000 chr2D 314051474 314052440 966 False 916.0 1604 97.9195 2370 3406 2 chr2D.!!$F3 1036
5 TraesCS6D01G235000 chr2D 517263660 517264649 989 True 501.0 501 76.3900 1286 2290 1 chr2D.!!$R4 1004
6 TraesCS6D01G235000 chr7D 20958953 20959919 966 False 876.5 1531 96.8190 2371 3406 2 chr7D.!!$F5 1035
7 TraesCS6D01G235000 chr7D 497569731 497570697 966 True 820.0 1421 95.3550 2370 3406 2 chr7D.!!$R1 1036
8 TraesCS6D01G235000 chr1A 560369098 560370001 903 False 1461.0 1461 95.9120 2506 3406 1 chr1A.!!$F1 900
9 TraesCS6D01G235000 chr1A 548461206 548462172 966 True 847.5 1476 95.9115 2370 3406 2 chr1A.!!$R1 1036
10 TraesCS6D01G235000 chr2A 733697473 733698373 900 True 1465.0 1465 96.0130 2506 3406 1 chr2A.!!$R3 900
11 TraesCS6D01G235000 chr2A 661584787 661585832 1045 True 510.0 510 76.1470 1224 2290 1 chr2A.!!$R2 1066
12 TraesCS6D01G235000 chr5A 43567314 43568217 903 True 1450.0 1450 95.6910 2506 3406 1 chr5A.!!$R1 900
13 TraesCS6D01G235000 chr3A 724302100 724303065 965 True 827.0 1424 96.1485 2370 3406 2 chr3A.!!$R1 1036
14 TraesCS6D01G235000 chr2B 609201263 609202243 980 True 466.0 466 75.9490 1286 2290 1 chr2B.!!$R2 1004

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
557 608 0.172578 TCAACACTCATACTCCGCCG 59.827 55.0 0.0 0.0 0.0 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2482 2568 0.037326 CATCACCGTGTACCTGCAGT 60.037 55.0 13.81 3.45 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.685276 TGACCAAATTCTTCATATGTACATTCT 57.315 29.630 14.77 0.00 0.00 2.40
87 88 6.206634 CCAAACTCTAAATGTAGCCAAGTCAA 59.793 38.462 0.00 0.00 0.00 3.18
124 125 2.115337 AGCTAGAAGCCCAGATCCAT 57.885 50.000 0.00 0.00 43.77 3.41
178 179 4.293662 ACAACAACAAAACCCAACCAAT 57.706 36.364 0.00 0.00 0.00 3.16
206 207 5.656859 AGAAACAACCAAGACTAAAAAGCCT 59.343 36.000 0.00 0.00 0.00 4.58
207 208 5.932619 AACAACCAAGACTAAAAAGCCTT 57.067 34.783 0.00 0.00 0.00 4.35
227 228 5.621228 GCCTTTATTTATCTTTCGATGTGCG 59.379 40.000 0.00 0.00 42.69 5.34
250 251 8.306761 TGCGATGATGTTATAGTTAGATGTGAT 58.693 33.333 0.00 0.00 0.00 3.06
251 252 8.590470 GCGATGATGTTATAGTTAGATGTGATG 58.410 37.037 0.00 0.00 0.00 3.07
316 324 7.423199 ACATATACTGTGTACATTGTACTCCG 58.577 38.462 23.58 18.87 36.48 4.63
322 330 2.557924 TGTACATTGTACTCCGTCCGTT 59.442 45.455 23.58 0.00 0.00 4.44
324 332 1.067354 ACATTGTACTCCGTCCGTTCC 60.067 52.381 0.00 0.00 0.00 3.62
325 333 1.203994 CATTGTACTCCGTCCGTTCCT 59.796 52.381 0.00 0.00 0.00 3.36
336 344 4.871557 TCCGTCCGTTCCTAAATATTTGTG 59.128 41.667 11.05 3.85 0.00 3.33
337 345 4.632688 CCGTCCGTTCCTAAATATTTGTGT 59.367 41.667 11.05 0.00 0.00 3.72
339 347 6.348704 CCGTCCGTTCCTAAATATTTGTGTTT 60.349 38.462 11.05 0.00 0.00 2.83
340 348 7.079475 CGTCCGTTCCTAAATATTTGTGTTTT 58.921 34.615 11.05 0.00 0.00 2.43
341 349 7.592164 CGTCCGTTCCTAAATATTTGTGTTTTT 59.408 33.333 11.05 0.00 0.00 1.94
361 369 9.638239 TGTTTTTAGATATTTCAAATGGACTGC 57.362 29.630 0.00 0.00 0.00 4.40
362 370 9.087424 GTTTTTAGATATTTCAAATGGACTGCC 57.913 33.333 0.00 0.00 0.00 4.85
377 385 3.257375 GGACTGCCACATACGGATGTATA 59.743 47.826 14.23 1.74 44.82 1.47
380 388 6.350696 GGACTGCCACATACGGATGTATATAA 60.351 42.308 14.23 0.00 44.82 0.98
381 389 6.395629 ACTGCCACATACGGATGTATATAAC 58.604 40.000 14.23 0.15 44.82 1.89
383 391 5.246429 TGCCACATACGGATGTATATAACCA 59.754 40.000 14.23 0.40 44.82 3.67
386 394 8.148351 GCCACATACGGATGTATATAACCATAT 58.852 37.037 14.23 0.00 44.82 1.78
415 423 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
416 424 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
417 425 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
418 426 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
419 427 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
420 428 4.631813 AGATTCACTCATTTTGCTCCGTAC 59.368 41.667 0.00 0.00 0.00 3.67
421 429 3.394674 TCACTCATTTTGCTCCGTACA 57.605 42.857 0.00 0.00 0.00 2.90
422 430 3.937814 TCACTCATTTTGCTCCGTACAT 58.062 40.909 0.00 0.00 0.00 2.29
423 431 5.079689 TCACTCATTTTGCTCCGTACATA 57.920 39.130 0.00 0.00 0.00 2.29
424 432 5.109210 TCACTCATTTTGCTCCGTACATAG 58.891 41.667 0.00 0.00 0.00 2.23
425 433 4.870426 CACTCATTTTGCTCCGTACATAGT 59.130 41.667 0.00 0.00 0.00 2.12
426 434 5.005779 CACTCATTTTGCTCCGTACATAGTC 59.994 44.000 0.00 0.00 0.00 2.59
427 435 5.079689 TCATTTTGCTCCGTACATAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
428 436 4.868171 TCATTTTGCTCCGTACATAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
429 437 4.530710 TTTTGCTCCGTACATAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
430 438 4.530710 TTTGCTCCGTACATAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
431 439 3.503827 TGCTCCGTACATAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
432 440 2.823747 TGCTCCGTACATAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
433 441 3.257375 TGCTCCGTACATAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
434 442 3.612860 GCTCCGTACATAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
435 443 4.617530 GCTCCGTACATAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
436 444 5.456548 TCCGTACATAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
437 445 5.845103 TCCGTACATAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
438 446 6.460781 TCCGTACATAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
439 447 6.588756 TCCGTACATAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
440 448 6.590292 CCGTACATAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
441 449 7.201444 CCGTACATAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
442 450 7.542477 CGTACATAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
443 451 9.856488 GTACATAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
445 453 9.778741 ACATAGTCACTTGTTGAAATCTCTAAA 57.221 29.630 0.00 0.00 35.39 1.85
470 521 3.951663 ACAAAAATAGGAACGGAGGGAG 58.048 45.455 0.00 0.00 0.00 4.30
471 522 3.329814 ACAAAAATAGGAACGGAGGGAGT 59.670 43.478 0.00 0.00 0.00 3.85
472 523 4.533311 ACAAAAATAGGAACGGAGGGAGTA 59.467 41.667 0.00 0.00 0.00 2.59
473 524 5.013391 ACAAAAATAGGAACGGAGGGAGTAA 59.987 40.000 0.00 0.00 0.00 2.24
474 525 5.970501 AAAATAGGAACGGAGGGAGTAAT 57.029 39.130 0.00 0.00 0.00 1.89
475 526 5.970501 AAATAGGAACGGAGGGAGTAATT 57.029 39.130 0.00 0.00 0.00 1.40
476 527 4.957684 ATAGGAACGGAGGGAGTAATTG 57.042 45.455 0.00 0.00 0.00 2.32
477 528 1.838077 AGGAACGGAGGGAGTAATTGG 59.162 52.381 0.00 0.00 0.00 3.16
539 590 2.474410 AAAACTGTCGAGGGACCATC 57.526 50.000 0.00 0.00 42.73 3.51
547 598 0.608130 CGAGGGACCATCAACACTCA 59.392 55.000 6.99 0.00 36.47 3.41
548 599 1.208052 CGAGGGACCATCAACACTCAT 59.792 52.381 6.99 0.00 36.47 2.90
557 608 0.172578 TCAACACTCATACTCCGCCG 59.827 55.000 0.00 0.00 0.00 6.46
603 654 2.016393 CTGCCATGCCATTCTGCCAG 62.016 60.000 0.00 0.00 0.00 4.85
628 679 2.605257 GCCCCAACCTAGAAAAACCTT 58.395 47.619 0.00 0.00 0.00 3.50
654 705 3.418913 GTGTGCGTGCGGTGCATA 61.419 61.111 0.00 0.00 45.34 3.14
655 706 2.666526 TGTGCGTGCGGTGCATAA 60.667 55.556 0.00 0.00 45.34 1.90
656 707 2.098298 GTGCGTGCGGTGCATAAG 59.902 61.111 0.00 0.00 45.34 1.73
657 708 2.047750 TGCGTGCGGTGCATAAGA 60.048 55.556 0.00 0.00 41.91 2.10
658 709 2.387445 TGCGTGCGGTGCATAAGAC 61.387 57.895 0.00 0.00 41.91 3.01
659 710 2.100631 GCGTGCGGTGCATAAGACT 61.101 57.895 0.00 0.00 41.91 3.24
660 711 0.804544 GCGTGCGGTGCATAAGACTA 60.805 55.000 0.00 0.00 41.91 2.59
661 712 1.200483 CGTGCGGTGCATAAGACTAG 58.800 55.000 0.00 0.00 41.91 2.57
662 713 0.931005 GTGCGGTGCATAAGACTAGC 59.069 55.000 0.00 0.00 41.91 3.42
663 714 0.179084 TGCGGTGCATAAGACTAGCC 60.179 55.000 0.00 0.00 31.71 3.93
664 715 0.179084 GCGGTGCATAAGACTAGCCA 60.179 55.000 0.00 0.00 0.00 4.75
665 716 1.571919 CGGTGCATAAGACTAGCCAC 58.428 55.000 0.00 0.00 0.00 5.01
666 717 1.134818 CGGTGCATAAGACTAGCCACA 60.135 52.381 0.00 0.00 0.00 4.17
667 718 2.676750 CGGTGCATAAGACTAGCCACAA 60.677 50.000 0.00 0.00 0.00 3.33
668 719 3.545703 GGTGCATAAGACTAGCCACAAT 58.454 45.455 0.00 0.00 0.00 2.71
669 720 3.313526 GGTGCATAAGACTAGCCACAATG 59.686 47.826 0.00 0.00 0.00 2.82
670 721 3.313526 GTGCATAAGACTAGCCACAATGG 59.686 47.826 0.00 0.00 41.55 3.16
671 722 2.880890 GCATAAGACTAGCCACAATGGG 59.119 50.000 0.00 0.00 38.19 4.00
683 734 5.031066 GCCACAATGGGTAGTAACATAGA 57.969 43.478 0.00 0.00 38.19 1.98
684 735 5.057149 GCCACAATGGGTAGTAACATAGAG 58.943 45.833 0.00 0.00 38.19 2.43
685 736 5.396436 GCCACAATGGGTAGTAACATAGAGT 60.396 44.000 0.00 0.00 38.19 3.24
686 737 6.183360 GCCACAATGGGTAGTAACATAGAGTA 60.183 42.308 0.00 0.00 38.19 2.59
687 738 7.434492 CCACAATGGGTAGTAACATAGAGTAG 58.566 42.308 0.00 0.00 32.67 2.57
688 739 7.069578 CCACAATGGGTAGTAACATAGAGTAGT 59.930 40.741 0.00 0.00 32.67 2.73
689 740 9.128404 CACAATGGGTAGTAACATAGAGTAGTA 57.872 37.037 0.00 0.00 0.00 1.82
690 741 9.705103 ACAATGGGTAGTAACATAGAGTAGTAA 57.295 33.333 0.00 0.00 0.00 2.24
691 742 9.962783 CAATGGGTAGTAACATAGAGTAGTAAC 57.037 37.037 0.00 0.00 0.00 2.50
692 743 9.705103 AATGGGTAGTAACATAGAGTAGTAACA 57.295 33.333 0.00 0.00 0.00 2.41
693 744 9.878737 ATGGGTAGTAACATAGAGTAGTAACAT 57.121 33.333 0.00 0.00 0.00 2.71
694 745 9.128404 TGGGTAGTAACATAGAGTAGTAACATG 57.872 37.037 0.00 0.00 0.00 3.21
695 746 9.347240 GGGTAGTAACATAGAGTAGTAACATGA 57.653 37.037 0.00 0.00 0.00 3.07
697 748 9.881529 GTAGTAACATAGAGTAGTAACATGAGC 57.118 37.037 0.00 0.00 0.00 4.26
698 749 8.521170 AGTAACATAGAGTAGTAACATGAGCA 57.479 34.615 0.00 0.00 0.00 4.26
699 750 9.137459 AGTAACATAGAGTAGTAACATGAGCAT 57.863 33.333 0.00 0.00 0.00 3.79
700 751 9.186323 GTAACATAGAGTAGTAACATGAGCATG 57.814 37.037 8.82 8.82 44.15 4.06
712 763 4.895224 CATGAGCATGTTAGAGCATGTT 57.105 40.909 7.98 2.21 45.75 2.71
713 764 5.996669 CATGAGCATGTTAGAGCATGTTA 57.003 39.130 7.98 0.00 45.75 2.41
714 765 5.745514 CATGAGCATGTTAGAGCATGTTAC 58.254 41.667 7.98 2.00 45.75 2.50
715 766 5.089970 TGAGCATGTTAGAGCATGTTACT 57.910 39.130 7.98 0.00 45.75 2.24
716 767 6.220726 TGAGCATGTTAGAGCATGTTACTA 57.779 37.500 7.98 0.00 45.75 1.82
717 768 6.042777 TGAGCATGTTAGAGCATGTTACTAC 58.957 40.000 7.98 0.00 45.75 2.73
718 769 6.127338 TGAGCATGTTAGAGCATGTTACTACT 60.127 38.462 7.98 0.00 45.75 2.57
719 770 6.276847 AGCATGTTAGAGCATGTTACTACTC 58.723 40.000 7.98 0.00 45.75 2.59
720 771 6.097554 AGCATGTTAGAGCATGTTACTACTCT 59.902 38.462 7.98 0.00 45.75 3.24
721 772 7.285629 AGCATGTTAGAGCATGTTACTACTCTA 59.714 37.037 7.98 0.00 45.75 2.43
722 773 8.085296 GCATGTTAGAGCATGTTACTACTCTAT 58.915 37.037 7.98 0.00 45.75 1.98
723 774 9.404348 CATGTTAGAGCATGTTACTACTCTATG 57.596 37.037 6.39 1.49 40.45 2.23
724 775 8.521170 TGTTAGAGCATGTTACTACTCTATGT 57.479 34.615 6.39 0.00 40.45 2.29
725 776 8.967918 TGTTAGAGCATGTTACTACTCTATGTT 58.032 33.333 6.39 0.00 40.45 2.71
728 779 8.754991 AGAGCATGTTACTACTCTATGTTACT 57.245 34.615 0.00 0.00 37.72 2.24
729 780 9.848710 AGAGCATGTTACTACTCTATGTTACTA 57.151 33.333 0.00 0.00 37.72 1.82
730 781 9.881529 GAGCATGTTACTACTCTATGTTACTAC 57.118 37.037 0.00 0.00 0.00 2.73
731 782 8.848182 AGCATGTTACTACTCTATGTTACTACC 58.152 37.037 0.00 0.00 0.00 3.18
732 783 8.848182 GCATGTTACTACTCTATGTTACTACCT 58.152 37.037 0.00 0.00 0.00 3.08
742 793 8.384718 ACTCTATGTTACTACCTCTATAGTGGG 58.615 40.741 21.82 16.23 36.09 4.61
743 794 8.515927 TCTATGTTACTACCTCTATAGTGGGA 57.484 38.462 21.82 14.49 36.09 4.37
744 795 8.952602 TCTATGTTACTACCTCTATAGTGGGAA 58.047 37.037 21.82 10.70 36.09 3.97
745 796 9.233649 CTATGTTACTACCTCTATAGTGGGAAG 57.766 40.741 21.82 19.36 36.09 3.46
746 797 6.978261 TGTTACTACCTCTATAGTGGGAAGT 58.022 40.000 23.48 23.48 36.09 3.01
747 798 8.106017 TGTTACTACCTCTATAGTGGGAAGTA 57.894 38.462 21.82 22.01 36.09 2.24
748 799 8.560039 TGTTACTACCTCTATAGTGGGAAGTAA 58.440 37.037 27.07 27.07 38.04 2.24
749 800 8.845227 GTTACTACCTCTATAGTGGGAAGTAAC 58.155 40.741 33.17 33.17 43.99 2.50
750 801 6.978261 ACTACCTCTATAGTGGGAAGTAACA 58.022 40.000 21.82 0.29 34.02 2.41
751 802 7.593653 ACTACCTCTATAGTGGGAAGTAACAT 58.406 38.462 21.82 3.60 34.02 2.71
752 803 8.730948 ACTACCTCTATAGTGGGAAGTAACATA 58.269 37.037 21.82 4.45 34.02 2.29
753 804 9.756571 CTACCTCTATAGTGGGAAGTAACATAT 57.243 37.037 21.82 2.54 33.22 1.78
754 805 8.423906 ACCTCTATAGTGGGAAGTAACATATG 57.576 38.462 21.82 0.00 33.22 1.78
755 806 8.011290 ACCTCTATAGTGGGAAGTAACATATGT 58.989 37.037 21.82 1.41 33.22 2.29
756 807 8.307483 CCTCTATAGTGGGAAGTAACATATGTG 58.693 40.741 9.63 0.00 0.00 3.21
757 808 8.777578 TCTATAGTGGGAAGTAACATATGTGT 57.222 34.615 9.63 2.63 41.28 3.72
758 809 9.871175 TCTATAGTGGGAAGTAACATATGTGTA 57.129 33.333 9.63 1.65 37.67 2.90
760 811 6.869206 AGTGGGAAGTAACATATGTGTAGT 57.131 37.500 9.63 4.62 37.67 2.73
761 812 7.966339 AGTGGGAAGTAACATATGTGTAGTA 57.034 36.000 9.63 0.00 37.67 1.82
762 813 8.370266 AGTGGGAAGTAACATATGTGTAGTAA 57.630 34.615 9.63 0.00 37.67 2.24
763 814 8.255905 AGTGGGAAGTAACATATGTGTAGTAAC 58.744 37.037 9.63 2.39 37.67 2.50
764 815 8.036575 GTGGGAAGTAACATATGTGTAGTAACA 58.963 37.037 9.63 2.24 37.67 2.41
765 816 8.764558 TGGGAAGTAACATATGTGTAGTAACAT 58.235 33.333 9.63 0.00 43.21 2.71
766 817 9.042008 GGGAAGTAACATATGTGTAGTAACATG 57.958 37.037 9.63 0.00 40.93 3.21
767 818 8.548721 GGAAGTAACATATGTGTAGTAACATGC 58.451 37.037 9.63 0.00 40.93 4.06
768 819 9.093970 GAAGTAACATATGTGTAGTAACATGCA 57.906 33.333 9.63 0.00 40.93 3.96
769 820 9.443323 AAGTAACATATGTGTAGTAACATGCAA 57.557 29.630 9.63 0.00 40.93 4.08
770 821 8.879759 AGTAACATATGTGTAGTAACATGCAAC 58.120 33.333 9.63 0.00 40.93 4.17
771 822 7.680442 AACATATGTGTAGTAACATGCAACA 57.320 32.000 9.63 0.00 40.93 3.33
772 823 7.072177 ACATATGTGTAGTAACATGCAACAC 57.928 36.000 7.78 8.32 40.93 3.32
773 824 6.878923 ACATATGTGTAGTAACATGCAACACT 59.121 34.615 7.78 7.40 40.93 3.55
774 825 7.390440 ACATATGTGTAGTAACATGCAACACTT 59.610 33.333 7.78 11.45 40.93 3.16
775 826 5.666969 TGTGTAGTAACATGCAACACTTC 57.333 39.130 14.68 4.31 40.78 3.01
776 827 5.119694 TGTGTAGTAACATGCAACACTTCA 58.880 37.500 14.68 6.42 40.78 3.02
777 828 5.007234 TGTGTAGTAACATGCAACACTTCAC 59.993 40.000 14.68 15.57 40.78 3.18
778 829 5.236478 GTGTAGTAACATGCAACACTTCACT 59.764 40.000 16.01 6.78 36.76 3.41
779 830 5.820423 TGTAGTAACATGCAACACTTCACTT 59.180 36.000 0.00 0.00 0.00 3.16
780 831 6.987404 TGTAGTAACATGCAACACTTCACTTA 59.013 34.615 0.00 0.00 0.00 2.24
781 832 7.659799 TGTAGTAACATGCAACACTTCACTTAT 59.340 33.333 0.00 0.00 0.00 1.73
782 833 7.510549 AGTAACATGCAACACTTCACTTATT 57.489 32.000 0.00 0.00 0.00 1.40
783 834 8.615878 AGTAACATGCAACACTTCACTTATTA 57.384 30.769 0.00 0.00 0.00 0.98
784 835 9.231297 AGTAACATGCAACACTTCACTTATTAT 57.769 29.630 0.00 0.00 0.00 1.28
785 836 9.277565 GTAACATGCAACACTTCACTTATTATG 57.722 33.333 0.00 0.00 0.00 1.90
786 837 6.324819 ACATGCAACACTTCACTTATTATGC 58.675 36.000 0.00 0.00 0.00 3.14
787 838 6.151648 ACATGCAACACTTCACTTATTATGCT 59.848 34.615 0.00 0.00 32.74 3.79
788 839 7.336679 ACATGCAACACTTCACTTATTATGCTA 59.663 33.333 0.00 0.00 32.74 3.49
789 840 7.864108 TGCAACACTTCACTTATTATGCTAT 57.136 32.000 0.00 0.00 32.74 2.97
790 841 8.956533 TGCAACACTTCACTTATTATGCTATA 57.043 30.769 0.00 0.00 32.74 1.31
791 842 9.045223 TGCAACACTTCACTTATTATGCTATAG 57.955 33.333 0.00 0.00 32.74 1.31
792 843 9.261180 GCAACACTTCACTTATTATGCTATAGA 57.739 33.333 3.21 0.00 0.00 1.98
806 857 9.664332 ATTATGCTATAGACTTATCTTGCCTTG 57.336 33.333 3.21 0.00 36.29 3.61
807 858 6.731292 TGCTATAGACTTATCTTGCCTTGA 57.269 37.500 3.21 0.00 36.29 3.02
808 859 7.308450 TGCTATAGACTTATCTTGCCTTGAT 57.692 36.000 3.21 0.00 36.29 2.57
809 860 8.422577 TGCTATAGACTTATCTTGCCTTGATA 57.577 34.615 3.21 0.00 36.29 2.15
810 861 9.040259 TGCTATAGACTTATCTTGCCTTGATAT 57.960 33.333 3.21 0.00 36.29 1.63
811 862 9.311916 GCTATAGACTTATCTTGCCTTGATATG 57.688 37.037 3.21 0.00 36.29 1.78
814 865 6.893583 AGACTTATCTTGCCTTGATATGTGT 58.106 36.000 11.25 7.02 35.97 3.72
815 866 6.765036 AGACTTATCTTGCCTTGATATGTGTG 59.235 38.462 11.25 0.00 35.97 3.82
816 867 6.653020 ACTTATCTTGCCTTGATATGTGTGA 58.347 36.000 0.00 0.00 35.15 3.58
817 868 7.285566 ACTTATCTTGCCTTGATATGTGTGAT 58.714 34.615 0.00 0.00 35.15 3.06
818 869 7.228108 ACTTATCTTGCCTTGATATGTGTGATG 59.772 37.037 0.00 0.00 35.15 3.07
819 870 4.847198 TCTTGCCTTGATATGTGTGATGT 58.153 39.130 0.00 0.00 0.00 3.06
820 871 5.255687 TCTTGCCTTGATATGTGTGATGTT 58.744 37.500 0.00 0.00 0.00 2.71
821 872 6.413892 TCTTGCCTTGATATGTGTGATGTTA 58.586 36.000 0.00 0.00 0.00 2.41
822 873 6.316140 TCTTGCCTTGATATGTGTGATGTTAC 59.684 38.462 0.00 0.00 0.00 2.50
823 874 5.495640 TGCCTTGATATGTGTGATGTTACA 58.504 37.500 0.00 0.00 0.00 2.41
824 875 5.585844 TGCCTTGATATGTGTGATGTTACAG 59.414 40.000 0.00 0.00 0.00 2.74
825 876 5.586243 GCCTTGATATGTGTGATGTTACAGT 59.414 40.000 0.00 0.00 0.00 3.55
826 877 6.761242 GCCTTGATATGTGTGATGTTACAGTA 59.239 38.462 0.00 0.00 0.00 2.74
827 878 7.279981 GCCTTGATATGTGTGATGTTACAGTAA 59.720 37.037 0.00 0.00 0.00 2.24
828 879 8.604035 CCTTGATATGTGTGATGTTACAGTAAC 58.396 37.037 15.58 15.58 39.11 2.50
829 880 9.371136 CTTGATATGTGTGATGTTACAGTAACT 57.629 33.333 21.56 9.41 39.38 2.24
832 883 8.873215 ATATGTGTGATGTTACAGTAACTAGC 57.127 34.615 21.56 12.59 39.38 3.42
833 884 6.340962 TGTGTGATGTTACAGTAACTAGCT 57.659 37.500 21.56 6.57 39.38 3.32
834 885 7.457024 TGTGTGATGTTACAGTAACTAGCTA 57.543 36.000 21.56 4.25 39.38 3.32
835 886 7.888424 TGTGTGATGTTACAGTAACTAGCTAA 58.112 34.615 21.56 3.59 39.38 3.09
836 887 8.027189 TGTGTGATGTTACAGTAACTAGCTAAG 58.973 37.037 21.56 0.00 39.38 2.18
837 888 8.027771 GTGTGATGTTACAGTAACTAGCTAAGT 58.972 37.037 21.56 0.00 41.49 2.24
838 889 9.234827 TGTGATGTTACAGTAACTAGCTAAGTA 57.765 33.333 21.56 1.61 37.50 2.24
870 921 9.868277 ACTAACTCTCTCTTCATTAACTCATTG 57.132 33.333 0.00 0.00 0.00 2.82
871 922 9.868277 CTAACTCTCTCTTCATTAACTCATTGT 57.132 33.333 0.00 0.00 0.00 2.71
872 923 8.770438 AACTCTCTCTTCATTAACTCATTGTC 57.230 34.615 0.00 0.00 0.00 3.18
873 924 7.901029 ACTCTCTCTTCATTAACTCATTGTCA 58.099 34.615 0.00 0.00 0.00 3.58
874 925 7.816995 ACTCTCTCTTCATTAACTCATTGTCAC 59.183 37.037 0.00 0.00 0.00 3.67
875 926 7.670364 TCTCTCTTCATTAACTCATTGTCACA 58.330 34.615 0.00 0.00 0.00 3.58
876 927 8.316946 TCTCTCTTCATTAACTCATTGTCACAT 58.683 33.333 0.00 0.00 0.00 3.21
877 928 9.591792 CTCTCTTCATTAACTCATTGTCACATA 57.408 33.333 0.00 0.00 0.00 2.29
878 929 9.591792 TCTCTTCATTAACTCATTGTCACATAG 57.408 33.333 0.00 0.00 0.00 2.23
879 930 9.591792 CTCTTCATTAACTCATTGTCACATAGA 57.408 33.333 0.00 0.00 0.00 1.98
895 946 8.440021 GTCACATAGACAAATTTGCTAAGTTG 57.560 34.615 18.12 17.28 46.77 3.16
896 947 7.538678 GTCACATAGACAAATTTGCTAAGTTGG 59.461 37.037 21.48 11.43 46.77 3.77
897 948 7.446931 TCACATAGACAAATTTGCTAAGTTGGA 59.553 33.333 21.48 13.04 42.11 3.53
898 949 7.538678 CACATAGACAAATTTGCTAAGTTGGAC 59.461 37.037 21.48 15.48 42.11 4.02
899 950 7.448469 ACATAGACAAATTTGCTAAGTTGGACT 59.552 33.333 21.48 20.06 42.11 3.85
900 951 6.715347 AGACAAATTTGCTAAGTTGGACTT 57.285 33.333 21.48 4.25 42.11 3.01
901 952 7.817418 AGACAAATTTGCTAAGTTGGACTTA 57.183 32.000 21.48 1.11 42.11 2.24
902 953 8.232913 AGACAAATTTGCTAAGTTGGACTTAA 57.767 30.769 21.48 0.00 42.11 1.85
903 954 8.691797 AGACAAATTTGCTAAGTTGGACTTAAA 58.308 29.630 21.48 0.00 42.11 1.52
904 955 8.871686 ACAAATTTGCTAAGTTGGACTTAAAG 57.128 30.769 21.48 0.00 42.11 1.85
905 956 8.474831 ACAAATTTGCTAAGTTGGACTTAAAGT 58.525 29.630 21.48 0.00 42.11 2.66
906 957 9.313118 CAAATTTGCTAAGTTGGACTTAAAGTT 57.687 29.630 12.27 0.10 39.89 2.66
908 959 9.961265 AATTTGCTAAGTTGGACTTAAAGTTAC 57.039 29.630 2.58 0.00 39.89 2.50
909 960 8.741603 TTTGCTAAGTTGGACTTAAAGTTACT 57.258 30.769 2.58 0.00 39.89 2.24
910 961 7.724305 TGCTAAGTTGGACTTAAAGTTACTG 57.276 36.000 2.58 0.00 39.89 2.74
911 962 7.277396 TGCTAAGTTGGACTTAAAGTTACTGT 58.723 34.615 2.58 0.00 39.89 3.55
912 963 7.225931 TGCTAAGTTGGACTTAAAGTTACTGTG 59.774 37.037 2.58 0.00 39.89 3.66
913 964 6.937436 AAGTTGGACTTAAAGTTACTGTGG 57.063 37.500 0.00 0.00 36.52 4.17
914 965 4.820173 AGTTGGACTTAAAGTTACTGTGGC 59.180 41.667 0.00 0.00 0.00 5.01
915 966 4.699925 TGGACTTAAAGTTACTGTGGCT 57.300 40.909 0.00 0.00 0.00 4.75
916 967 5.811796 TGGACTTAAAGTTACTGTGGCTA 57.188 39.130 0.00 0.00 0.00 3.93
917 968 5.790593 TGGACTTAAAGTTACTGTGGCTAG 58.209 41.667 0.00 0.00 0.00 3.42
918 969 5.306160 TGGACTTAAAGTTACTGTGGCTAGT 59.694 40.000 0.00 0.99 34.71 2.57
919 970 5.868258 GGACTTAAAGTTACTGTGGCTAGTC 59.132 44.000 0.00 0.00 32.19 2.59
920 971 6.295180 GGACTTAAAGTTACTGTGGCTAGTCT 60.295 42.308 0.00 0.00 32.19 3.24
942 993 4.604784 AACCTAGGGCAGAGTAGAACTA 57.395 45.455 14.81 0.00 0.00 2.24
995 1046 1.973812 GTTTGCACCTCCCCTGCTC 60.974 63.158 0.00 0.00 35.53 4.26
1055 1107 1.076777 CCACGGCTTCCATCCCATT 60.077 57.895 0.00 0.00 0.00 3.16
1077 1129 2.069273 CCGAATCTCACTTCGCACTTT 58.931 47.619 0.90 0.00 45.07 2.66
1122 1179 0.906756 CTTCTCCTCCAGGTGCTCCA 60.907 60.000 7.70 0.00 36.34 3.86
1183 1240 2.125326 ATCGATCCCGTTCCAGCGA 61.125 57.895 0.00 0.00 37.05 4.93
1184 1241 2.351336 ATCGATCCCGTTCCAGCGAC 62.351 60.000 0.00 0.00 37.05 5.19
1185 1242 2.577059 GATCCCGTTCCAGCGACA 59.423 61.111 0.00 0.00 0.00 4.35
1186 1243 1.519455 GATCCCGTTCCAGCGACAG 60.519 63.158 0.00 0.00 0.00 3.51
1187 1244 3.665675 ATCCCGTTCCAGCGACAGC 62.666 63.158 0.00 0.00 45.58 4.40
1347 1410 4.366684 CCCTGCAGGTTCCACCCC 62.367 72.222 30.63 0.00 39.75 4.95
1998 2067 2.047274 ATCGTCACCACCAAGCCG 60.047 61.111 0.00 0.00 0.00 5.52
2025 2094 2.108976 CGCATATGGTGGGTCGCT 59.891 61.111 4.56 0.00 36.12 4.93
2079 2148 4.441695 TCGGCGAGCAAGCAGGAG 62.442 66.667 4.99 0.00 39.27 3.69
2083 2161 4.399395 CGAGCAAGCAGGAGGCCA 62.399 66.667 5.01 0.00 46.50 5.36
2190 2274 2.264480 CGCATGGACAACCTCGGA 59.736 61.111 0.00 0.00 37.04 4.55
2225 2309 2.202676 GGAGAACAGCGGCGAGAG 60.203 66.667 12.98 0.73 0.00 3.20
2297 2381 2.357323 GCCCAAGCTTCTGAAGAATAGC 59.643 50.000 21.06 11.76 35.50 2.97
2298 2382 3.614092 CCCAAGCTTCTGAAGAATAGCA 58.386 45.455 21.06 0.00 33.01 3.49
2305 2389 3.475566 TCTGAAGAATAGCAATCCCCG 57.524 47.619 0.00 0.00 0.00 5.73
2320 2404 2.727392 CCCGGACGTTGGAGCCATA 61.727 63.158 0.73 0.00 0.00 2.74
2368 2454 9.736023 GAAATTTGTATATAGAAAAGGGCAGTG 57.264 33.333 8.93 0.00 0.00 3.66
2435 2521 1.076777 CATCAACCGGCCAGGGATT 60.077 57.895 16.44 1.95 46.96 3.01
2436 2522 0.182537 CATCAACCGGCCAGGGATTA 59.817 55.000 16.44 1.81 46.96 1.75
2437 2523 0.182775 ATCAACCGGCCAGGGATTAC 59.817 55.000 16.44 0.00 46.96 1.89
2438 2524 1.202099 TCAACCGGCCAGGGATTACA 61.202 55.000 16.44 0.00 46.96 2.41
2439 2525 1.029947 CAACCGGCCAGGGATTACAC 61.030 60.000 16.44 0.00 46.96 2.90
2440 2526 1.493854 AACCGGCCAGGGATTACACA 61.494 55.000 16.44 0.00 46.96 3.72
2441 2527 1.301623 CCGGCCAGGGATTACACAA 59.698 57.895 2.24 0.00 35.97 3.33
2442 2528 0.748005 CCGGCCAGGGATTACACAAG 60.748 60.000 2.24 0.00 35.97 3.16
2443 2529 0.748005 CGGCCAGGGATTACACAAGG 60.748 60.000 2.24 0.00 0.00 3.61
2444 2530 1.037579 GGCCAGGGATTACACAAGGC 61.038 60.000 0.00 0.00 40.48 4.35
2445 2531 1.037579 GCCAGGGATTACACAAGGCC 61.038 60.000 0.00 0.00 37.06 5.19
2446 2532 0.331278 CCAGGGATTACACAAGGCCA 59.669 55.000 5.01 0.00 0.00 5.36
2447 2533 1.463674 CAGGGATTACACAAGGCCAC 58.536 55.000 5.01 0.00 0.00 5.01
2448 2534 0.331616 AGGGATTACACAAGGCCACC 59.668 55.000 5.01 0.00 0.00 4.61
2449 2535 0.039035 GGGATTACACAAGGCCACCA 59.961 55.000 5.01 0.00 0.00 4.17
2450 2536 1.549037 GGGATTACACAAGGCCACCAA 60.549 52.381 5.01 0.00 0.00 3.67
2451 2537 2.456577 GGATTACACAAGGCCACCAAT 58.543 47.619 5.01 0.00 0.00 3.16
2452 2538 3.626222 GGGATTACACAAGGCCACCAATA 60.626 47.826 5.01 0.00 0.00 1.90
2453 2539 3.380320 GGATTACACAAGGCCACCAATAC 59.620 47.826 5.01 0.00 0.00 1.89
2454 2540 3.510531 TTACACAAGGCCACCAATACA 57.489 42.857 5.01 0.00 0.00 2.29
2455 2541 2.373335 ACACAAGGCCACCAATACAA 57.627 45.000 5.01 0.00 0.00 2.41
2456 2542 1.960689 ACACAAGGCCACCAATACAAC 59.039 47.619 5.01 0.00 0.00 3.32
2457 2543 1.272212 CACAAGGCCACCAATACAACC 59.728 52.381 5.01 0.00 0.00 3.77
2458 2544 1.133325 ACAAGGCCACCAATACAACCA 60.133 47.619 5.01 0.00 0.00 3.67
2459 2545 1.967066 CAAGGCCACCAATACAACCAA 59.033 47.619 5.01 0.00 0.00 3.67
2460 2546 2.566724 CAAGGCCACCAATACAACCAAT 59.433 45.455 5.01 0.00 0.00 3.16
2461 2547 2.901291 AGGCCACCAATACAACCAATT 58.099 42.857 5.01 0.00 0.00 2.32
2462 2548 2.566724 AGGCCACCAATACAACCAATTG 59.433 45.455 5.01 0.00 41.98 2.32
2473 2559 8.430801 CAATACAACCAATTGGAAACAGAAAA 57.569 30.769 31.22 6.45 44.54 2.29
2474 2560 8.550376 CAATACAACCAATTGGAAACAGAAAAG 58.450 33.333 31.22 7.45 44.54 2.27
2475 2561 6.293004 ACAACCAATTGGAAACAGAAAAGA 57.707 33.333 31.22 0.00 44.54 2.52
2476 2562 6.706295 ACAACCAATTGGAAACAGAAAAGAA 58.294 32.000 31.22 0.00 44.54 2.52
2477 2563 7.164803 ACAACCAATTGGAAACAGAAAAGAAA 58.835 30.769 31.22 0.00 44.54 2.52
2478 2564 7.663493 ACAACCAATTGGAAACAGAAAAGAAAA 59.337 29.630 31.22 0.00 44.54 2.29
2479 2565 7.609760 ACCAATTGGAAACAGAAAAGAAAAC 57.390 32.000 31.22 0.00 44.54 2.43
2480 2566 7.164803 ACCAATTGGAAACAGAAAAGAAAACA 58.835 30.769 31.22 0.00 44.54 2.83
2481 2567 7.663493 ACCAATTGGAAACAGAAAAGAAAACAA 59.337 29.630 31.22 0.00 44.54 2.83
2482 2568 8.510505 CCAATTGGAAACAGAAAAGAAAACAAA 58.489 29.630 20.50 0.00 44.54 2.83
2483 2569 9.328721 CAATTGGAAACAGAAAAGAAAACAAAC 57.671 29.630 0.00 0.00 44.54 2.93
2484 2570 8.846943 ATTGGAAACAGAAAAGAAAACAAACT 57.153 26.923 0.00 0.00 44.54 2.66
2485 2571 7.650834 TGGAAACAGAAAAGAAAACAAACTG 57.349 32.000 0.00 0.00 35.01 3.16
2486 2572 6.147000 TGGAAACAGAAAAGAAAACAAACTGC 59.853 34.615 0.00 0.00 35.01 4.40
2487 2573 6.147000 GGAAACAGAAAAGAAAACAAACTGCA 59.853 34.615 0.00 0.00 0.00 4.41
2488 2574 6.710692 AACAGAAAAGAAAACAAACTGCAG 57.289 33.333 13.48 13.48 0.00 4.41
2489 2575 5.170748 ACAGAAAAGAAAACAAACTGCAGG 58.829 37.500 19.93 2.38 0.00 4.85
2490 2576 5.170748 CAGAAAAGAAAACAAACTGCAGGT 58.829 37.500 19.93 9.19 0.00 4.00
2491 2577 6.071616 ACAGAAAAGAAAACAAACTGCAGGTA 60.072 34.615 19.93 0.00 0.00 3.08
2492 2578 6.253512 CAGAAAAGAAAACAAACTGCAGGTAC 59.746 38.462 19.93 0.00 0.00 3.34
2493 2579 5.652994 AAAGAAAACAAACTGCAGGTACA 57.347 34.783 19.93 0.00 0.00 2.90
2494 2580 4.632538 AGAAAACAAACTGCAGGTACAC 57.367 40.909 19.93 1.09 0.00 2.90
2495 2581 3.064820 AGAAAACAAACTGCAGGTACACG 59.935 43.478 19.93 3.70 0.00 4.49
2496 2582 1.305201 AACAAACTGCAGGTACACGG 58.695 50.000 19.93 2.22 0.00 4.94
2497 2583 0.179468 ACAAACTGCAGGTACACGGT 59.821 50.000 19.93 2.89 0.00 4.83
2498 2584 0.586319 CAAACTGCAGGTACACGGTG 59.414 55.000 19.93 6.58 0.00 4.94
2499 2585 0.466543 AAACTGCAGGTACACGGTGA 59.533 50.000 19.93 0.00 0.00 4.02
2500 2586 0.685097 AACTGCAGGTACACGGTGAT 59.315 50.000 19.93 1.80 0.00 3.06
2501 2587 0.037326 ACTGCAGGTACACGGTGATG 60.037 55.000 19.93 8.78 0.00 3.07
2502 2588 1.361668 CTGCAGGTACACGGTGATGC 61.362 60.000 16.29 17.59 0.00 3.91
2503 2589 2.106683 GCAGGTACACGGTGATGCC 61.107 63.158 16.29 12.80 0.00 4.40
3078 3170 1.751351 CAGAATCAGCTCCGTGACCTA 59.249 52.381 0.00 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.340088 ACCATTGCATGTGGCTTGAA 58.660 45.000 16.28 0.00 45.15 2.69
87 88 0.603569 CTACAGCTTGTCCCGTGTCT 59.396 55.000 0.00 0.00 0.00 3.41
108 109 2.494888 TGGATGGATCTGGGCTTCTA 57.505 50.000 0.00 0.00 0.00 2.10
178 179 7.971722 GCTTTTTAGTCTTGGTTGTTTCTGTTA 59.028 33.333 0.00 0.00 0.00 2.41
313 321 4.871557 CACAAATATTTAGGAACGGACGGA 59.128 41.667 0.00 0.00 0.00 4.69
316 324 8.806177 AAAAACACAAATATTTAGGAACGGAC 57.194 30.769 0.00 0.00 0.00 4.79
336 344 9.087424 GGCAGTCCATTTGAAATATCTAAAAAC 57.913 33.333 0.00 0.00 0.00 2.43
337 345 8.811017 TGGCAGTCCATTTGAAATATCTAAAAA 58.189 29.630 0.00 0.00 37.47 1.94
339 347 7.395772 TGTGGCAGTCCATTTGAAATATCTAAA 59.604 33.333 0.00 0.00 45.62 1.85
340 348 6.889177 TGTGGCAGTCCATTTGAAATATCTAA 59.111 34.615 0.00 0.00 45.62 2.10
341 349 6.422333 TGTGGCAGTCCATTTGAAATATCTA 58.578 36.000 0.00 0.00 45.62 1.98
343 351 5.581126 TGTGGCAGTCCATTTGAAATATC 57.419 39.130 0.00 0.00 45.62 1.63
344 352 6.238731 CGTATGTGGCAGTCCATTTGAAATAT 60.239 38.462 0.00 0.00 45.62 1.28
345 353 5.065859 CGTATGTGGCAGTCCATTTGAAATA 59.934 40.000 0.00 0.00 45.62 1.40
346 354 4.142403 CGTATGTGGCAGTCCATTTGAAAT 60.142 41.667 0.00 0.00 45.62 2.17
347 355 3.190327 CGTATGTGGCAGTCCATTTGAAA 59.810 43.478 0.00 0.00 45.62 2.69
349 357 2.355197 CGTATGTGGCAGTCCATTTGA 58.645 47.619 0.00 0.00 45.62 2.69
350 358 1.401552 CCGTATGTGGCAGTCCATTTG 59.598 52.381 0.00 0.00 45.62 2.32
354 362 0.177836 CATCCGTATGTGGCAGTCCA 59.822 55.000 0.00 0.00 40.85 4.02
355 363 0.178068 ACATCCGTATGTGGCAGTCC 59.822 55.000 0.00 0.00 44.79 3.85
356 364 2.882927 TACATCCGTATGTGGCAGTC 57.117 50.000 3.56 0.00 45.99 3.51
357 365 6.395629 GTTATATACATCCGTATGTGGCAGT 58.604 40.000 3.56 0.00 45.99 4.40
358 366 5.810587 GGTTATATACATCCGTATGTGGCAG 59.189 44.000 3.56 0.00 45.99 4.85
359 367 5.246429 TGGTTATATACATCCGTATGTGGCA 59.754 40.000 3.56 0.00 45.99 4.92
360 368 5.726397 TGGTTATATACATCCGTATGTGGC 58.274 41.667 3.56 0.00 45.99 5.01
393 401 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
394 402 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
395 403 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
396 404 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
398 406 4.391830 TGTACGGAGCAAAATGAGTGAATC 59.608 41.667 0.00 0.00 0.00 2.52
399 407 4.323417 TGTACGGAGCAAAATGAGTGAAT 58.677 39.130 0.00 0.00 0.00 2.57
400 408 3.734463 TGTACGGAGCAAAATGAGTGAA 58.266 40.909 0.00 0.00 0.00 3.18
401 409 3.394674 TGTACGGAGCAAAATGAGTGA 57.605 42.857 0.00 0.00 0.00 3.41
402 410 4.870426 ACTATGTACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
403 411 5.086104 ACTATGTACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
404 412 5.005779 GTGACTATGTACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
405 413 4.868171 GTGACTATGTACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
406 414 4.870426 AGTGACTATGTACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
408 416 4.530710 AGTGACTATGTACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
409 417 4.242475 CAAGTGACTATGTACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
411 419 2.823747 ACAAGTGACTATGTACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
412 420 3.505464 ACAAGTGACTATGTACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
413 421 5.055642 TCAACAAGTGACTATGTACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
414 422 5.456548 TTCAACAAGTGACTATGTACGGA 57.543 39.130 0.00 0.00 35.39 4.69
415 423 6.590292 AGATTTCAACAAGTGACTATGTACGG 59.410 38.462 0.00 0.00 35.39 4.02
416 424 7.542477 AGAGATTTCAACAAGTGACTATGTACG 59.458 37.037 0.00 0.00 35.39 3.67
417 425 8.764524 AGAGATTTCAACAAGTGACTATGTAC 57.235 34.615 0.00 0.00 35.39 2.90
419 427 9.778741 TTTAGAGATTTCAACAAGTGACTATGT 57.221 29.630 0.00 0.00 35.39 2.29
445 453 5.599242 TCCCTCCGTTCCTATTTTTGTTTTT 59.401 36.000 0.00 0.00 0.00 1.94
451 459 5.767277 TTACTCCCTCCGTTCCTATTTTT 57.233 39.130 0.00 0.00 0.00 1.94
458 466 1.558294 ACCAATTACTCCCTCCGTTCC 59.442 52.381 0.00 0.00 0.00 3.62
523 574 0.608640 GTTGATGGTCCCTCGACAGT 59.391 55.000 9.15 0.00 41.13 3.55
526 577 0.608640 AGTGTTGATGGTCCCTCGAC 59.391 55.000 7.44 7.44 38.38 4.20
539 590 0.806102 CCGGCGGAGTATGAGTGTTG 60.806 60.000 24.41 0.00 0.00 3.33
547 598 2.414594 GCGTTACCGGCGGAGTAT 59.585 61.111 35.78 13.23 33.68 2.12
557 608 1.280444 CACGTTTGGTGGCGTTACC 59.720 57.895 3.61 3.61 43.16 2.85
628 679 1.278337 GCACGCACACGACATTTGA 59.722 52.632 0.00 0.00 43.93 2.69
653 704 4.359105 ACTACCCATTGTGGCTAGTCTTA 58.641 43.478 0.00 0.00 35.79 2.10
654 705 3.182152 ACTACCCATTGTGGCTAGTCTT 58.818 45.455 0.00 0.00 35.79 3.01
655 706 2.834113 ACTACCCATTGTGGCTAGTCT 58.166 47.619 0.00 0.00 35.79 3.24
656 707 4.081309 TGTTACTACCCATTGTGGCTAGTC 60.081 45.833 7.13 0.00 35.79 2.59
657 708 3.841845 TGTTACTACCCATTGTGGCTAGT 59.158 43.478 8.55 8.55 35.79 2.57
658 709 4.481368 TGTTACTACCCATTGTGGCTAG 57.519 45.455 0.00 0.00 35.79 3.42
659 710 5.900699 TCTATGTTACTACCCATTGTGGCTA 59.099 40.000 0.00 0.00 35.79 3.93
660 711 4.719773 TCTATGTTACTACCCATTGTGGCT 59.280 41.667 0.00 0.00 35.79 4.75
661 712 5.031066 TCTATGTTACTACCCATTGTGGC 57.969 43.478 0.00 0.00 35.79 5.01
662 713 6.235231 ACTCTATGTTACTACCCATTGTGG 57.765 41.667 0.00 0.00 37.25 4.17
663 714 8.008513 ACTACTCTATGTTACTACCCATTGTG 57.991 38.462 0.00 0.00 0.00 3.33
664 715 9.705103 TTACTACTCTATGTTACTACCCATTGT 57.295 33.333 0.00 0.00 0.00 2.71
665 716 9.962783 GTTACTACTCTATGTTACTACCCATTG 57.037 37.037 0.00 0.00 0.00 2.82
666 717 9.705103 TGTTACTACTCTATGTTACTACCCATT 57.295 33.333 0.00 0.00 0.00 3.16
667 718 9.878737 ATGTTACTACTCTATGTTACTACCCAT 57.121 33.333 0.00 0.00 0.00 4.00
668 719 9.128404 CATGTTACTACTCTATGTTACTACCCA 57.872 37.037 0.00 0.00 0.00 4.51
669 720 9.347240 TCATGTTACTACTCTATGTTACTACCC 57.653 37.037 0.00 0.00 0.00 3.69
671 722 9.881529 GCTCATGTTACTACTCTATGTTACTAC 57.118 37.037 0.00 0.00 0.00 2.73
672 723 9.623000 TGCTCATGTTACTACTCTATGTTACTA 57.377 33.333 0.00 0.00 0.00 1.82
673 724 8.521170 TGCTCATGTTACTACTCTATGTTACT 57.479 34.615 0.00 0.00 0.00 2.24
674 725 9.186323 CATGCTCATGTTACTACTCTATGTTAC 57.814 37.037 1.84 0.00 34.23 2.50
698 749 9.137459 ACATAGAGTAGTAACATGCTCTAACAT 57.863 33.333 8.85 0.00 44.35 2.71
699 750 8.521170 ACATAGAGTAGTAACATGCTCTAACA 57.479 34.615 8.85 0.00 44.35 2.41
702 753 9.848710 AGTAACATAGAGTAGTAACATGCTCTA 57.151 33.333 7.63 7.63 44.97 2.43
703 754 8.754991 AGTAACATAGAGTAGTAACATGCTCT 57.245 34.615 0.00 0.00 43.57 4.09
704 755 9.881529 GTAGTAACATAGAGTAGTAACATGCTC 57.118 37.037 0.00 0.00 32.62 4.26
705 756 8.848182 GGTAGTAACATAGAGTAGTAACATGCT 58.152 37.037 0.00 0.00 0.00 3.79
706 757 8.848182 AGGTAGTAACATAGAGTAGTAACATGC 58.152 37.037 0.00 0.00 0.00 4.06
716 767 8.384718 CCCACTATAGAGGTAGTAACATAGAGT 58.615 40.741 14.29 0.00 33.29 3.24
717 768 8.604184 TCCCACTATAGAGGTAGTAACATAGAG 58.396 40.741 14.29 0.00 33.29 2.43
718 769 8.515927 TCCCACTATAGAGGTAGTAACATAGA 57.484 38.462 14.29 0.00 33.29 1.98
719 770 9.233649 CTTCCCACTATAGAGGTAGTAACATAG 57.766 40.741 14.29 0.00 33.29 2.23
720 771 8.730948 ACTTCCCACTATAGAGGTAGTAACATA 58.269 37.037 17.73 0.00 33.29 2.29
721 772 7.593653 ACTTCCCACTATAGAGGTAGTAACAT 58.406 38.462 17.73 1.67 33.29 2.71
722 773 6.978261 ACTTCCCACTATAGAGGTAGTAACA 58.022 40.000 17.73 0.00 33.29 2.41
723 774 8.845227 GTTACTTCCCACTATAGAGGTAGTAAC 58.155 40.741 31.13 31.13 40.31 2.50
724 775 8.560039 TGTTACTTCCCACTATAGAGGTAGTAA 58.440 37.037 24.67 24.67 33.29 2.24
725 776 8.106017 TGTTACTTCCCACTATAGAGGTAGTA 57.894 38.462 19.39 19.39 33.29 1.82
726 777 6.978261 TGTTACTTCCCACTATAGAGGTAGT 58.022 40.000 20.74 20.74 35.34 2.73
727 778 9.756571 ATATGTTACTTCCCACTATAGAGGTAG 57.243 37.037 14.29 14.29 0.00 3.18
728 779 9.529823 CATATGTTACTTCCCACTATAGAGGTA 57.470 37.037 14.29 0.00 0.00 3.08
729 780 8.011290 ACATATGTTACTTCCCACTATAGAGGT 58.989 37.037 14.29 0.00 0.00 3.85
730 781 8.307483 CACATATGTTACTTCCCACTATAGAGG 58.693 40.741 5.37 8.10 0.00 3.69
731 782 8.861086 ACACATATGTTACTTCCCACTATAGAG 58.139 37.037 5.37 0.00 34.46 2.43
732 783 8.777578 ACACATATGTTACTTCCCACTATAGA 57.222 34.615 5.37 0.00 34.46 1.98
734 785 9.650714 ACTACACATATGTTACTTCCCACTATA 57.349 33.333 5.37 0.00 40.48 1.31
735 786 8.548880 ACTACACATATGTTACTTCCCACTAT 57.451 34.615 5.37 0.00 40.48 2.12
736 787 7.966339 ACTACACATATGTTACTTCCCACTA 57.034 36.000 5.37 0.00 40.48 2.74
737 788 6.869206 ACTACACATATGTTACTTCCCACT 57.131 37.500 5.37 0.00 40.48 4.00
738 789 8.036575 TGTTACTACACATATGTTACTTCCCAC 58.963 37.037 5.37 0.00 40.48 4.61
739 790 8.136563 TGTTACTACACATATGTTACTTCCCA 57.863 34.615 5.37 0.00 40.48 4.37
740 791 9.042008 CATGTTACTACACATATGTTACTTCCC 57.958 37.037 5.37 0.00 40.48 3.97
741 792 8.548721 GCATGTTACTACACATATGTTACTTCC 58.451 37.037 5.37 0.00 40.48 3.46
742 793 9.093970 TGCATGTTACTACACATATGTTACTTC 57.906 33.333 5.37 0.00 40.48 3.01
743 794 9.443323 TTGCATGTTACTACACATATGTTACTT 57.557 29.630 5.37 0.00 40.48 2.24
744 795 8.879759 GTTGCATGTTACTACACATATGTTACT 58.120 33.333 5.37 0.00 40.48 2.24
745 796 8.661257 TGTTGCATGTTACTACACATATGTTAC 58.339 33.333 5.37 0.00 40.48 2.50
746 797 8.661257 GTGTTGCATGTTACTACACATATGTTA 58.339 33.333 5.37 2.01 41.45 2.41
747 798 7.390440 AGTGTTGCATGTTACTACACATATGTT 59.610 33.333 15.74 0.84 43.34 2.71
748 799 6.878923 AGTGTTGCATGTTACTACACATATGT 59.121 34.615 15.74 1.41 43.34 2.29
749 800 7.307493 AGTGTTGCATGTTACTACACATATG 57.693 36.000 15.74 0.00 43.34 1.78
750 801 7.606073 TGAAGTGTTGCATGTTACTACACATAT 59.394 33.333 15.74 4.04 43.34 1.78
751 802 6.931840 TGAAGTGTTGCATGTTACTACACATA 59.068 34.615 15.74 1.77 43.34 2.29
752 803 5.762711 TGAAGTGTTGCATGTTACTACACAT 59.237 36.000 15.74 5.81 43.34 3.21
753 804 5.007234 GTGAAGTGTTGCATGTTACTACACA 59.993 40.000 15.74 0.00 43.34 3.72
754 805 5.236478 AGTGAAGTGTTGCATGTTACTACAC 59.764 40.000 7.36 7.36 41.91 2.90
755 806 5.364778 AGTGAAGTGTTGCATGTTACTACA 58.635 37.500 0.00 0.00 38.95 2.74
756 807 5.924475 AGTGAAGTGTTGCATGTTACTAC 57.076 39.130 0.00 0.00 0.00 2.73
757 808 8.615878 AATAAGTGAAGTGTTGCATGTTACTA 57.384 30.769 0.00 0.00 0.00 1.82
758 809 7.510549 AATAAGTGAAGTGTTGCATGTTACT 57.489 32.000 0.00 0.00 0.00 2.24
759 810 9.277565 CATAATAAGTGAAGTGTTGCATGTTAC 57.722 33.333 0.00 0.00 0.00 2.50
760 811 7.967854 GCATAATAAGTGAAGTGTTGCATGTTA 59.032 33.333 0.00 0.00 0.00 2.41
761 812 6.808212 GCATAATAAGTGAAGTGTTGCATGTT 59.192 34.615 0.00 0.00 0.00 2.71
762 813 6.151648 AGCATAATAAGTGAAGTGTTGCATGT 59.848 34.615 0.00 0.00 0.00 3.21
763 814 6.558009 AGCATAATAAGTGAAGTGTTGCATG 58.442 36.000 0.00 0.00 0.00 4.06
764 815 6.764308 AGCATAATAAGTGAAGTGTTGCAT 57.236 33.333 0.00 0.00 0.00 3.96
765 816 7.864108 ATAGCATAATAAGTGAAGTGTTGCA 57.136 32.000 0.00 0.00 0.00 4.08
766 817 9.261180 TCTATAGCATAATAAGTGAAGTGTTGC 57.739 33.333 0.00 0.00 0.00 4.17
780 831 9.664332 CAAGGCAAGATAAGTCTATAGCATAAT 57.336 33.333 0.00 0.00 33.30 1.28
781 832 8.870116 TCAAGGCAAGATAAGTCTATAGCATAA 58.130 33.333 0.00 0.00 33.30 1.90
782 833 8.422577 TCAAGGCAAGATAAGTCTATAGCATA 57.577 34.615 0.00 0.00 33.30 3.14
783 834 7.308450 TCAAGGCAAGATAAGTCTATAGCAT 57.692 36.000 0.00 0.00 33.30 3.79
784 835 6.731292 TCAAGGCAAGATAAGTCTATAGCA 57.269 37.500 0.00 0.00 33.30 3.49
785 836 9.311916 CATATCAAGGCAAGATAAGTCTATAGC 57.688 37.037 0.00 0.00 33.30 2.97
788 839 8.654997 ACACATATCAAGGCAAGATAAGTCTAT 58.345 33.333 3.53 0.00 30.14 1.98
789 840 7.928167 CACACATATCAAGGCAAGATAAGTCTA 59.072 37.037 3.53 0.00 30.14 2.59
790 841 6.765036 CACACATATCAAGGCAAGATAAGTCT 59.235 38.462 3.53 0.00 30.14 3.24
791 842 6.763135 TCACACATATCAAGGCAAGATAAGTC 59.237 38.462 3.53 0.00 30.14 3.01
792 843 6.653020 TCACACATATCAAGGCAAGATAAGT 58.347 36.000 3.53 3.02 32.06 2.24
793 844 7.228108 ACATCACACATATCAAGGCAAGATAAG 59.772 37.037 3.53 2.48 32.22 1.73
794 845 7.056006 ACATCACACATATCAAGGCAAGATAA 58.944 34.615 3.53 0.00 32.22 1.75
795 846 6.594744 ACATCACACATATCAAGGCAAGATA 58.405 36.000 2.11 2.11 32.93 1.98
796 847 5.443283 ACATCACACATATCAAGGCAAGAT 58.557 37.500 0.00 0.00 0.00 2.40
797 848 4.847198 ACATCACACATATCAAGGCAAGA 58.153 39.130 0.00 0.00 0.00 3.02
798 849 5.571784 AACATCACACATATCAAGGCAAG 57.428 39.130 0.00 0.00 0.00 4.01
799 850 5.942826 TGTAACATCACACATATCAAGGCAA 59.057 36.000 0.00 0.00 0.00 4.52
800 851 5.495640 TGTAACATCACACATATCAAGGCA 58.504 37.500 0.00 0.00 0.00 4.75
801 852 5.586243 ACTGTAACATCACACATATCAAGGC 59.414 40.000 0.00 0.00 0.00 4.35
802 853 8.604035 GTTACTGTAACATCACACATATCAAGG 58.396 37.037 22.30 0.00 38.52 3.61
803 854 9.371136 AGTTACTGTAACATCACACATATCAAG 57.629 33.333 27.12 0.00 41.07 3.02
806 857 8.969267 GCTAGTTACTGTAACATCACACATATC 58.031 37.037 27.12 5.73 41.07 1.63
807 858 8.696374 AGCTAGTTACTGTAACATCACACATAT 58.304 33.333 27.12 9.43 41.07 1.78
808 859 8.063200 AGCTAGTTACTGTAACATCACACATA 57.937 34.615 27.12 11.12 41.07 2.29
809 860 6.936279 AGCTAGTTACTGTAACATCACACAT 58.064 36.000 27.12 10.64 41.07 3.21
810 861 6.340962 AGCTAGTTACTGTAACATCACACA 57.659 37.500 27.12 7.11 41.07 3.72
811 862 8.027771 ACTTAGCTAGTTACTGTAACATCACAC 58.972 37.037 27.12 13.16 41.07 3.82
812 863 8.118976 ACTTAGCTAGTTACTGTAACATCACA 57.881 34.615 27.12 10.61 41.07 3.58
844 895 9.868277 CAATGAGTTAATGAAGAGAGAGTTAGT 57.132 33.333 0.00 0.00 0.00 2.24
845 896 9.868277 ACAATGAGTTAATGAAGAGAGAGTTAG 57.132 33.333 0.00 0.00 0.00 2.34
846 897 9.862371 GACAATGAGTTAATGAAGAGAGAGTTA 57.138 33.333 0.00 0.00 0.00 2.24
847 898 8.370940 TGACAATGAGTTAATGAAGAGAGAGTT 58.629 33.333 0.00 0.00 0.00 3.01
848 899 7.816995 GTGACAATGAGTTAATGAAGAGAGAGT 59.183 37.037 0.00 0.00 0.00 3.24
849 900 7.816513 TGTGACAATGAGTTAATGAAGAGAGAG 59.183 37.037 0.00 0.00 0.00 3.20
850 901 7.670364 TGTGACAATGAGTTAATGAAGAGAGA 58.330 34.615 0.00 0.00 0.00 3.10
851 902 7.895975 TGTGACAATGAGTTAATGAAGAGAG 57.104 36.000 0.00 0.00 0.00 3.20
852 903 9.591792 CTATGTGACAATGAGTTAATGAAGAGA 57.408 33.333 0.00 0.00 0.00 3.10
853 904 9.591792 TCTATGTGACAATGAGTTAATGAAGAG 57.408 33.333 0.00 0.00 0.00 2.85
854 905 9.371136 GTCTATGTGACAATGAGTTAATGAAGA 57.629 33.333 0.00 0.00 44.73 2.87
870 921 7.538678 CCAACTTAGCAAATTTGTCTATGTGAC 59.461 37.037 24.63 9.02 45.54 3.67
871 922 7.446931 TCCAACTTAGCAAATTTGTCTATGTGA 59.553 33.333 24.63 19.64 31.94 3.58
872 923 7.538678 GTCCAACTTAGCAAATTTGTCTATGTG 59.461 37.037 24.63 20.39 31.94 3.21
873 924 7.448469 AGTCCAACTTAGCAAATTTGTCTATGT 59.552 33.333 19.03 20.70 32.38 2.29
874 925 7.820648 AGTCCAACTTAGCAAATTTGTCTATG 58.179 34.615 19.03 20.21 0.00 2.23
875 926 8.409358 AAGTCCAACTTAGCAAATTTGTCTAT 57.591 30.769 19.03 6.36 36.52 1.98
876 927 7.817418 AAGTCCAACTTAGCAAATTTGTCTA 57.183 32.000 19.03 16.38 36.52 2.59
877 928 6.715347 AAGTCCAACTTAGCAAATTTGTCT 57.285 33.333 19.03 17.27 36.52 3.41
878 929 8.865590 TTTAAGTCCAACTTAGCAAATTTGTC 57.134 30.769 19.03 11.45 41.23 3.18
879 930 8.474831 ACTTTAAGTCCAACTTAGCAAATTTGT 58.525 29.630 19.03 8.88 41.23 2.83
880 931 8.871686 ACTTTAAGTCCAACTTAGCAAATTTG 57.128 30.769 14.03 14.03 41.23 2.32
882 933 9.961265 GTAACTTTAAGTCCAACTTAGCAAATT 57.039 29.630 0.00 0.00 41.23 1.82
883 934 9.350951 AGTAACTTTAAGTCCAACTTAGCAAAT 57.649 29.630 0.00 0.00 41.23 2.32
884 935 8.617809 CAGTAACTTTAAGTCCAACTTAGCAAA 58.382 33.333 0.00 0.00 41.23 3.68
885 936 7.771826 ACAGTAACTTTAAGTCCAACTTAGCAA 59.228 33.333 0.00 0.00 41.23 3.91
886 937 7.225931 CACAGTAACTTTAAGTCCAACTTAGCA 59.774 37.037 0.00 0.00 41.23 3.49
887 938 7.307811 CCACAGTAACTTTAAGTCCAACTTAGC 60.308 40.741 0.00 0.00 41.23 3.09
888 939 7.307811 GCCACAGTAACTTTAAGTCCAACTTAG 60.308 40.741 0.00 0.00 41.23 2.18
889 940 6.484308 GCCACAGTAACTTTAAGTCCAACTTA 59.516 38.462 0.00 0.00 39.51 2.24
890 941 5.298527 GCCACAGTAACTTTAAGTCCAACTT 59.701 40.000 0.00 0.00 41.97 2.66
891 942 4.820173 GCCACAGTAACTTTAAGTCCAACT 59.180 41.667 0.00 0.26 0.00 3.16
892 943 4.820173 AGCCACAGTAACTTTAAGTCCAAC 59.180 41.667 0.00 0.00 0.00 3.77
893 944 5.043737 AGCCACAGTAACTTTAAGTCCAA 57.956 39.130 0.00 0.00 0.00 3.53
894 945 4.699925 AGCCACAGTAACTTTAAGTCCA 57.300 40.909 0.00 0.00 0.00 4.02
895 946 5.791666 ACTAGCCACAGTAACTTTAAGTCC 58.208 41.667 0.00 0.00 0.00 3.85
896 947 6.689554 AGACTAGCCACAGTAACTTTAAGTC 58.310 40.000 0.00 0.00 0.00 3.01
897 948 6.667558 AGACTAGCCACAGTAACTTTAAGT 57.332 37.500 0.00 0.00 0.00 2.24
898 949 7.544915 GGTTAGACTAGCCACAGTAACTTTAAG 59.455 40.741 10.31 0.00 0.00 1.85
899 950 7.234166 AGGTTAGACTAGCCACAGTAACTTTAA 59.766 37.037 16.78 0.00 0.00 1.52
900 951 6.723052 AGGTTAGACTAGCCACAGTAACTTTA 59.277 38.462 16.78 0.00 0.00 1.85
901 952 5.543020 AGGTTAGACTAGCCACAGTAACTTT 59.457 40.000 16.78 0.00 0.00 2.66
902 953 5.085219 AGGTTAGACTAGCCACAGTAACTT 58.915 41.667 16.78 0.00 0.00 2.66
903 954 4.675038 AGGTTAGACTAGCCACAGTAACT 58.325 43.478 16.78 0.00 0.00 2.24
904 955 5.067544 CCTAGGTTAGACTAGCCACAGTAAC 59.932 48.000 16.78 0.00 39.27 2.50
905 956 5.198965 CCTAGGTTAGACTAGCCACAGTAA 58.801 45.833 16.78 0.00 39.27 2.24
906 957 4.386088 CCCTAGGTTAGACTAGCCACAGTA 60.386 50.000 16.78 0.91 39.27 2.74
907 958 3.627747 CCCTAGGTTAGACTAGCCACAGT 60.628 52.174 16.78 0.00 39.27 3.55
908 959 2.959707 CCCTAGGTTAGACTAGCCACAG 59.040 54.545 16.78 12.41 39.27 3.66
909 960 2.953620 GCCCTAGGTTAGACTAGCCACA 60.954 54.545 16.78 4.23 39.27 4.17
910 961 1.687660 GCCCTAGGTTAGACTAGCCAC 59.312 57.143 16.78 0.00 39.27 5.01
911 962 1.289830 TGCCCTAGGTTAGACTAGCCA 59.710 52.381 16.78 3.38 39.27 4.75
912 963 1.964933 CTGCCCTAGGTTAGACTAGCC 59.035 57.143 8.29 7.26 39.27 3.93
913 964 2.888414 CTCTGCCCTAGGTTAGACTAGC 59.112 54.545 8.29 1.52 39.27 3.42
914 965 4.173290 ACTCTGCCCTAGGTTAGACTAG 57.827 50.000 8.29 2.46 40.08 2.57
915 966 4.973856 TCTACTCTGCCCTAGGTTAGACTA 59.026 45.833 8.29 3.94 0.00 2.59
916 967 3.787013 TCTACTCTGCCCTAGGTTAGACT 59.213 47.826 8.29 3.01 0.00 3.24
917 968 4.167652 TCTACTCTGCCCTAGGTTAGAC 57.832 50.000 8.29 0.00 0.00 2.59
918 969 4.230041 AGTTCTACTCTGCCCTAGGTTAGA 59.770 45.833 8.29 9.78 0.00 2.10
919 970 4.538738 AGTTCTACTCTGCCCTAGGTTAG 58.461 47.826 8.29 5.61 0.00 2.34
920 971 4.604784 AGTTCTACTCTGCCCTAGGTTA 57.395 45.455 8.29 0.00 0.00 2.85
942 993 2.279069 CGTGGAGCTGGACCAGACT 61.279 63.158 26.25 20.21 38.14 3.24
995 1046 2.735134 GGCCGGTCGTTATATAAAGCAG 59.265 50.000 1.90 1.37 0.00 4.24
1077 1129 1.069358 GATGGGGGCGTTTTGTTTTCA 59.931 47.619 0.00 0.00 0.00 2.69
1174 1231 3.470567 CGTCGCTGTCGCTGGAAC 61.471 66.667 0.00 0.00 35.26 3.62
2025 2094 1.153309 CATCCAGCGCATCAGGTCA 60.153 57.895 11.47 0.00 0.00 4.02
2130 2214 1.613610 CTCCTCCGGGTCTAGGTCA 59.386 63.158 0.00 0.00 34.30 4.02
2190 2274 4.980805 ACGTCCGCAATGCACCGT 62.981 61.111 5.91 7.02 0.00 4.83
2297 2381 1.449601 CTCCAACGTCCGGGGATTG 60.450 63.158 0.00 3.43 0.00 2.67
2298 2382 2.987125 CTCCAACGTCCGGGGATT 59.013 61.111 0.00 0.00 0.00 3.01
2305 2389 1.816074 TGTTTATGGCTCCAACGTCC 58.184 50.000 0.00 0.00 0.00 4.79
2320 2404 7.905604 TTCATCACATAAGTCGAGATTGTTT 57.094 32.000 0.00 0.00 0.00 2.83
2360 2446 2.158726 TCCGTTCTAAAAACACTGCCCT 60.159 45.455 0.00 0.00 0.00 5.19
2363 2449 2.350484 GCCTCCGTTCTAAAAACACTGC 60.350 50.000 0.00 0.00 0.00 4.40
2364 2450 3.139077 AGCCTCCGTTCTAAAAACACTG 58.861 45.455 0.00 0.00 0.00 3.66
2365 2451 3.181458 TGAGCCTCCGTTCTAAAAACACT 60.181 43.478 0.00 0.00 0.00 3.55
2368 2454 4.062991 TCTTGAGCCTCCGTTCTAAAAAC 58.937 43.478 0.00 0.00 0.00 2.43
2435 2521 3.150767 GTTGTATTGGTGGCCTTGTGTA 58.849 45.455 3.32 0.00 0.00 2.90
2436 2522 1.960689 GTTGTATTGGTGGCCTTGTGT 59.039 47.619 3.32 0.00 0.00 3.72
2437 2523 1.272212 GGTTGTATTGGTGGCCTTGTG 59.728 52.381 3.32 0.00 0.00 3.33
2438 2524 1.133325 TGGTTGTATTGGTGGCCTTGT 60.133 47.619 3.32 0.00 0.00 3.16
2439 2525 1.626686 TGGTTGTATTGGTGGCCTTG 58.373 50.000 3.32 0.00 0.00 3.61
2440 2526 2.390225 TTGGTTGTATTGGTGGCCTT 57.610 45.000 3.32 0.00 0.00 4.35
2441 2527 2.566724 CAATTGGTTGTATTGGTGGCCT 59.433 45.455 3.32 0.00 31.00 5.19
2442 2528 2.354604 CCAATTGGTTGTATTGGTGGCC 60.355 50.000 16.90 0.00 44.51 5.36
2443 2529 2.971307 CCAATTGGTTGTATTGGTGGC 58.029 47.619 16.90 0.00 44.51 5.01
2448 2534 8.430801 TTTTCTGTTTCCAATTGGTTGTATTG 57.569 30.769 23.76 9.66 36.34 1.90
2449 2535 8.482128 TCTTTTCTGTTTCCAATTGGTTGTATT 58.518 29.630 23.76 0.00 36.34 1.89
2450 2536 8.017418 TCTTTTCTGTTTCCAATTGGTTGTAT 57.983 30.769 23.76 0.00 36.34 2.29
2451 2537 7.411486 TCTTTTCTGTTTCCAATTGGTTGTA 57.589 32.000 23.76 1.54 36.34 2.41
2452 2538 6.293004 TCTTTTCTGTTTCCAATTGGTTGT 57.707 33.333 23.76 0.00 36.34 3.32
2453 2539 7.608308 TTTCTTTTCTGTTTCCAATTGGTTG 57.392 32.000 23.76 10.61 36.34 3.77
2454 2540 7.663493 TGTTTTCTTTTCTGTTTCCAATTGGTT 59.337 29.630 23.76 0.00 36.34 3.67
2455 2541 7.164803 TGTTTTCTTTTCTGTTTCCAATTGGT 58.835 30.769 23.76 0.00 36.34 3.67
2456 2542 7.608308 TGTTTTCTTTTCTGTTTCCAATTGG 57.392 32.000 19.08 19.08 0.00 3.16
2457 2543 9.328721 GTTTGTTTTCTTTTCTGTTTCCAATTG 57.671 29.630 0.00 0.00 0.00 2.32
2458 2544 9.283768 AGTTTGTTTTCTTTTCTGTTTCCAATT 57.716 25.926 0.00 0.00 0.00 2.32
2459 2545 8.720562 CAGTTTGTTTTCTTTTCTGTTTCCAAT 58.279 29.630 0.00 0.00 0.00 3.16
2460 2546 7.307692 GCAGTTTGTTTTCTTTTCTGTTTCCAA 60.308 33.333 0.00 0.00 0.00 3.53
2461 2547 6.147000 GCAGTTTGTTTTCTTTTCTGTTTCCA 59.853 34.615 0.00 0.00 0.00 3.53
2462 2548 6.147000 TGCAGTTTGTTTTCTTTTCTGTTTCC 59.853 34.615 0.00 0.00 0.00 3.13
2463 2549 7.116061 TGCAGTTTGTTTTCTTTTCTGTTTC 57.884 32.000 0.00 0.00 0.00 2.78
2464 2550 6.147656 CCTGCAGTTTGTTTTCTTTTCTGTTT 59.852 34.615 13.81 0.00 0.00 2.83
2465 2551 5.639082 CCTGCAGTTTGTTTTCTTTTCTGTT 59.361 36.000 13.81 0.00 0.00 3.16
2466 2552 5.170748 CCTGCAGTTTGTTTTCTTTTCTGT 58.829 37.500 13.81 0.00 0.00 3.41
2467 2553 5.170748 ACCTGCAGTTTGTTTTCTTTTCTG 58.829 37.500 13.81 0.00 0.00 3.02
2468 2554 5.405935 ACCTGCAGTTTGTTTTCTTTTCT 57.594 34.783 13.81 0.00 0.00 2.52
2469 2555 6.034577 GTGTACCTGCAGTTTGTTTTCTTTTC 59.965 38.462 13.81 0.00 0.00 2.29
2470 2556 5.867174 GTGTACCTGCAGTTTGTTTTCTTTT 59.133 36.000 13.81 0.00 0.00 2.27
2471 2557 5.407502 GTGTACCTGCAGTTTGTTTTCTTT 58.592 37.500 13.81 0.00 0.00 2.52
2472 2558 4.438200 CGTGTACCTGCAGTTTGTTTTCTT 60.438 41.667 13.81 0.00 0.00 2.52
2473 2559 3.064820 CGTGTACCTGCAGTTTGTTTTCT 59.935 43.478 13.81 0.00 0.00 2.52
2474 2560 3.359654 CGTGTACCTGCAGTTTGTTTTC 58.640 45.455 13.81 0.00 0.00 2.29
2475 2561 2.098443 CCGTGTACCTGCAGTTTGTTTT 59.902 45.455 13.81 0.00 0.00 2.43
2476 2562 1.673920 CCGTGTACCTGCAGTTTGTTT 59.326 47.619 13.81 0.00 0.00 2.83
2477 2563 1.305201 CCGTGTACCTGCAGTTTGTT 58.695 50.000 13.81 0.00 0.00 2.83
2478 2564 0.179468 ACCGTGTACCTGCAGTTTGT 59.821 50.000 13.81 6.14 0.00 2.83
2479 2565 0.586319 CACCGTGTACCTGCAGTTTG 59.414 55.000 13.81 0.00 0.00 2.93
2480 2566 0.466543 TCACCGTGTACCTGCAGTTT 59.533 50.000 13.81 1.21 0.00 2.66
2481 2567 0.685097 ATCACCGTGTACCTGCAGTT 59.315 50.000 13.81 0.00 0.00 3.16
2482 2568 0.037326 CATCACCGTGTACCTGCAGT 60.037 55.000 13.81 3.45 0.00 4.40
2483 2569 1.361668 GCATCACCGTGTACCTGCAG 61.362 60.000 6.78 6.78 0.00 4.41
2484 2570 1.375396 GCATCACCGTGTACCTGCA 60.375 57.895 0.00 0.00 0.00 4.41
2485 2571 2.106683 GGCATCACCGTGTACCTGC 61.107 63.158 0.00 4.39 0.00 4.85
2486 2572 4.201951 GGCATCACCGTGTACCTG 57.798 61.111 0.00 0.00 0.00 4.00
2495 2581 1.644786 GCCTTGTGTACGGCATCACC 61.645 60.000 4.79 0.00 45.59 4.02
2496 2582 1.794222 GCCTTGTGTACGGCATCAC 59.206 57.895 4.79 0.00 45.59 3.06
2497 2583 4.294523 GCCTTGTGTACGGCATCA 57.705 55.556 4.79 0.00 45.59 3.07
2501 2587 3.053896 GGTGGCCTTGTGTACGGC 61.054 66.667 3.32 1.17 45.55 5.68
2502 2588 0.608035 ATTGGTGGCCTTGTGTACGG 60.608 55.000 3.32 0.00 0.00 4.02
2503 2589 1.735571 GTATTGGTGGCCTTGTGTACG 59.264 52.381 3.32 0.00 0.00 3.67
2504 2590 2.785562 TGTATTGGTGGCCTTGTGTAC 58.214 47.619 3.32 2.80 0.00 2.90
3345 3438 2.142357 TTGCGGAGACAGGTCGACAG 62.142 60.000 18.91 11.75 34.09 3.51
3371 3464 1.297968 TCCATGCCCAGGAGAAATCA 58.702 50.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.