Multiple sequence alignment - TraesCS6D01G234900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G234900 chr6D 100.000 7363 0 0 2030 9392 329841558 329848920 0.000000e+00 13598.0
1 TraesCS6D01G234900 chr6D 100.000 1654 0 0 1 1654 329839529 329841182 0.000000e+00 3055.0
2 TraesCS6D01G234900 chr6D 80.513 585 82 18 110 671 254815168 254815743 4.060000e-113 420.0
3 TraesCS6D01G234900 chr6D 83.973 443 48 15 4055 4489 410168805 410169232 4.080000e-108 403.0
4 TraesCS6D01G234900 chr6A 92.412 4336 209 32 4110 8396 469020231 469024495 0.000000e+00 6074.0
5 TraesCS6D01G234900 chr6A 95.821 2034 72 12 2030 4054 469017787 469019816 0.000000e+00 3273.0
6 TraesCS6D01G234900 chr6A 92.780 1482 61 15 112 1568 469016092 469017552 0.000000e+00 2102.0
7 TraesCS6D01G234900 chr6A 93.112 842 42 7 8395 9230 469024537 469025368 0.000000e+00 1219.0
8 TraesCS6D01G234900 chr6A 93.103 116 8 0 1 116 468941751 468941866 4.510000e-38 171.0
9 TraesCS6D01G234900 chr6A 96.341 82 2 1 1569 1649 469017639 469017720 5.920000e-27 134.0
10 TraesCS6D01G234900 chr6B 92.708 1728 70 23 6686 8396 490648848 490647160 0.000000e+00 2442.0
11 TraesCS6D01G234900 chr6B 90.182 1701 117 12 4991 6657 490650504 490648820 0.000000e+00 2170.0
12 TraesCS6D01G234900 chr6B 95.748 1129 43 2 2033 3156 490653639 490652511 0.000000e+00 1814.0
13 TraesCS6D01G234900 chr6B 94.645 971 41 6 4055 5016 490651635 490650667 0.000000e+00 1495.0
14 TraesCS6D01G234900 chr6B 93.687 887 27 12 767 1649 490654572 490653711 0.000000e+00 1301.0
15 TraesCS6D01G234900 chr6B 95.679 810 31 4 3245 4054 490652511 490651706 0.000000e+00 1299.0
16 TraesCS6D01G234900 chr6B 93.443 305 17 2 8399 8703 490647113 490646812 5.170000e-122 449.0
17 TraesCS6D01G234900 chr6B 78.826 562 75 25 60 599 680688072 680687533 1.170000e-88 339.0
18 TraesCS6D01G234900 chr6B 84.259 324 43 5 361 676 352416482 352416159 9.160000e-80 309.0
19 TraesCS6D01G234900 chr6B 89.744 234 17 4 8929 9162 490645669 490645895 9.220000e-75 292.0
20 TraesCS6D01G234900 chr6B 82.477 331 50 8 4055 4380 557917711 557918038 5.550000e-72 283.0
21 TraesCS6D01G234900 chr6B 89.855 138 6 4 9263 9392 490645672 490645535 4.510000e-38 171.0
22 TraesCS6D01G234900 chr6B 80.508 118 19 4 8576 8690 14390869 14390985 4.670000e-13 87.9
23 TraesCS6D01G234900 chr6B 83.495 103 6 7 8834 8925 490646485 490646383 1.680000e-12 86.1
24 TraesCS6D01G234900 chr2B 85.177 452 61 6 4055 4502 178528551 178528102 8.590000e-125 459.0
25 TraesCS6D01G234900 chr2B 84.758 433 58 7 4069 4497 125828083 125828511 2.420000e-115 427.0
26 TraesCS6D01G234900 chr2B 86.555 119 12 4 4814 4929 311906517 311906634 2.750000e-25 128.0
27 TraesCS6D01G234900 chr3B 84.667 450 60 9 4055 4499 483608891 483609336 3.110000e-119 440.0
28 TraesCS6D01G234900 chr3B 78.337 457 70 22 239 686 52798166 52798602 1.550000e-67 268.0
29 TraesCS6D01G234900 chr5A 83.263 472 59 13 109 576 561503362 561503817 5.250000e-112 416.0
30 TraesCS6D01G234900 chr5A 87.293 181 21 1 6557 6735 472907215 472907395 1.240000e-48 206.0
31 TraesCS6D01G234900 chr1D 83.480 454 64 10 4055 4499 376862468 376862017 6.790000e-111 412.0
32 TraesCS6D01G234900 chr1D 82.143 112 18 2 8568 8678 265534458 265534348 2.790000e-15 95.3
33 TraesCS6D01G234900 chr1A 83.186 452 62 12 4055 4497 477044991 477044545 1.470000e-107 401.0
34 TraesCS6D01G234900 chr5B 81.676 513 65 15 114 600 423729956 423729447 5.280000e-107 399.0
35 TraesCS6D01G234900 chr5B 85.286 367 38 9 115 466 590380707 590380342 1.930000e-96 364.0
36 TraesCS6D01G234900 chr5B 86.667 180 23 1 6557 6735 672205453 672205274 2.070000e-46 198.0
37 TraesCS6D01G234900 chr5B 75.132 378 80 8 116 480 394629561 394629937 2.100000e-36 165.0
38 TraesCS6D01G234900 chr2D 81.511 503 71 14 110 607 356525749 356526234 2.460000e-105 394.0
39 TraesCS6D01G234900 chr2D 81.148 366 54 7 130 480 34891228 34890863 7.180000e-71 279.0
40 TraesCS6D01G234900 chr2D 85.437 206 25 5 6557 6759 13411512 13411309 9.560000e-50 209.0
41 TraesCS6D01G234900 chr2D 84.615 104 12 3 6749 6851 357707724 357707824 6.000000e-17 100.0
42 TraesCS6D01G234900 chr2D 78.481 158 20 9 8568 8714 615905336 615905182 3.610000e-14 91.6
43 TraesCS6D01G234900 chr2D 73.272 217 37 15 6747 6949 255618985 255618776 1.020000e-04 60.2
44 TraesCS6D01G234900 chr2A 80.517 503 77 13 109 607 477001928 477002413 5.360000e-97 366.0
45 TraesCS6D01G234900 chr2A 86.842 190 22 3 6557 6744 189015533 189015345 9.560000e-50 209.0
46 TraesCS6D01G234900 chr2A 97.222 36 1 0 6966 7001 233161636 233161601 2.830000e-05 62.1
47 TraesCS6D01G234900 chr4D 79.140 465 71 17 130 581 497146925 497147376 1.980000e-76 298.0
48 TraesCS6D01G234900 chr4D 81.338 284 39 8 126 397 35686631 35686912 1.590000e-52 219.0
49 TraesCS6D01G234900 chr4D 86.842 190 21 3 6559 6745 15220292 15220104 9.560000e-50 209.0
50 TraesCS6D01G234900 chr3D 81.266 395 41 16 4108 4497 125491646 125491280 1.190000e-73 289.0
51 TraesCS6D01G234900 chr3D 77.249 378 66 10 110 471 170770918 170770545 4.450000e-48 204.0
52 TraesCS6D01G234900 chr7B 88.053 226 20 7 4814 5037 418055352 418055572 2.600000e-65 261.0
53 TraesCS6D01G234900 chr7B 88.000 175 20 1 6160 6334 418055884 418056057 1.240000e-48 206.0
54 TraesCS6D01G234900 chr7B 86.179 123 13 4 4810 4929 36236822 36236943 7.650000e-26 130.0
55 TraesCS6D01G234900 chr7B 88.235 68 4 1 518 581 68551514 68551581 2.810000e-10 78.7
56 TraesCS6D01G234900 chr7A 86.425 221 25 3 4814 5033 464579395 464579611 4.380000e-58 237.0
57 TraesCS6D01G234900 chr7A 100.000 29 0 0 6972 7000 120969128 120969156 5.000000e-03 54.7
58 TraesCS6D01G234900 chr7D 84.490 245 29 6 4814 5055 407080115 407080353 5.670000e-57 233.0
59 TraesCS6D01G234900 chr7D 80.612 294 43 8 116 397 116788873 116789164 2.050000e-51 215.0
60 TraesCS6D01G234900 chr7D 87.288 118 14 1 4814 4930 461236789 461236672 5.920000e-27 134.0
61 TraesCS6D01G234900 chr4A 87.640 178 21 1 6559 6735 633257099 633257276 1.240000e-48 206.0
62 TraesCS6D01G234900 chr4B 87.293 181 19 4 6557 6735 526137742 526137564 4.450000e-48 204.0
63 TraesCS6D01G234900 chr4B 86.740 181 23 1 6557 6736 641541393 641541573 5.750000e-47 200.0
64 TraesCS6D01G234900 chr4B 83.969 131 15 5 4804 4929 167374566 167374695 4.610000e-23 121.0
65 TraesCS6D01G234900 chr1B 100.000 29 0 0 6972 7000 114172978 114173006 5.000000e-03 54.7
66 TraesCS6D01G234900 chr5D 90.000 40 4 0 6901 6940 525582823 525582862 1.700000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G234900 chr6D 329839529 329848920 9391 False 8326.500000 13598 100.000000 1 9392 2 chr6D.!!$F3 9391
1 TraesCS6D01G234900 chr6D 254815168 254815743 575 False 420.000000 420 80.513000 110 671 1 chr6D.!!$F1 561
2 TraesCS6D01G234900 chr6A 469016092 469025368 9276 False 2560.400000 6074 94.093200 112 9230 5 chr6A.!!$F2 9118
3 TraesCS6D01G234900 chr6B 490645535 490654572 9037 True 1247.455556 2442 92.160222 767 9392 9 chr6B.!!$R3 8625
4 TraesCS6D01G234900 chr6B 680687533 680688072 539 True 339.000000 339 78.826000 60 599 1 chr6B.!!$R2 539
5 TraesCS6D01G234900 chr5B 423729447 423729956 509 True 399.000000 399 81.676000 114 600 1 chr5B.!!$R1 486
6 TraesCS6D01G234900 chr7B 418055352 418056057 705 False 233.500000 261 88.026500 4814 6334 2 chr7B.!!$F3 1520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.240945 CGACAAATGCCAACACCTCC 59.759 55.000 0.00 0.00 0.00 4.30 F
100 101 0.250513 GGAGATGGCTTCCACGAGTT 59.749 55.000 0.00 0.00 35.80 3.01 F
738 784 0.385473 ACGAAATTTGCAAGACGCCG 60.385 50.000 0.00 4.16 41.33 6.46 F
745 791 0.533491 TTGCAAGACGCCGGTATACT 59.467 50.000 1.90 0.00 41.33 2.12 F
1336 1397 0.711670 GACGCGCTGTCGATTTGTTA 59.288 50.000 5.73 0.00 37.96 2.41 F
3038 3193 1.003118 TGCAGCCTTTCCGTCATACTT 59.997 47.619 0.00 0.00 0.00 2.24 F
3136 3291 0.712979 TCCCTGAGACCATCCTGAGT 59.287 55.000 0.00 0.00 0.00 3.41 F
4459 4977 1.091771 ATCGGCTTCATCCAACAGCG 61.092 55.000 0.00 0.00 34.09 5.18 F
5247 5974 0.106708 GGATATCACGAGCCAAGGCA 59.893 55.000 14.40 0.00 44.88 4.75 F
6066 6823 0.234884 GACGGTTGCTTCGTTCCTTG 59.765 55.000 0.00 0.00 41.22 3.61 F
7809 8572 0.179004 TGACCCCAAAATGTCGCACT 60.179 50.000 0.00 0.00 34.18 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1173 1232 0.900182 AGACCACGTGCATCAGGAGA 60.900 55.000 10.91 0.0 0.00 3.71 R
1336 1397 1.000955 ACGCCTCACGAAGAAAGTGAT 59.999 47.619 0.00 0.0 46.07 3.06 R
2147 2295 1.275010 TGCGCTAAGGTGATCAGAACA 59.725 47.619 9.73 0.0 0.00 3.18 R
2235 2387 3.055891 TCAGGCACTTCGAGATTCAATCA 60.056 43.478 0.00 0.0 34.60 2.57 R
3114 3269 1.383803 AGGATGGTCTCAGGGAGCC 60.384 63.158 0.00 0.0 41.34 4.70 R
4349 4867 2.094390 TGCCACGTGTACTAATCCAGAC 60.094 50.000 15.65 0.0 0.00 3.51 R
5088 5798 2.952978 GGGAGAGAGCGAGTTCTATCAA 59.047 50.000 12.30 0.0 37.20 2.57 R
6187 6945 0.390340 GAGACCATGTGCTCGCTCAA 60.390 55.000 0.00 0.0 0.00 3.02 R
6681 7441 0.411452 TGCTTCCCTATTTGGCCCAA 59.589 50.000 0.00 0.0 0.00 4.12 R
7813 8576 0.170339 GTAGTGCGACATTTTGGGCC 59.830 55.000 0.00 0.0 0.00 5.80 R
9242 10924 0.035056 AGCCAGGAATGTGCTGTACC 60.035 55.000 0.00 0.0 33.66 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.422890 CGCCGCAAAATTCTTCTTTTG 57.577 42.857 5.20 5.20 44.96 2.44
21 22 2.155539 CGCCGCAAAATTCTTCTTTTGG 59.844 45.455 10.31 2.63 43.26 3.28
22 23 2.096268 GCCGCAAAATTCTTCTTTTGGC 60.096 45.455 10.31 3.94 43.26 4.52
23 24 2.155539 CCGCAAAATTCTTCTTTTGGCG 59.844 45.455 10.18 10.18 43.26 5.69
24 25 3.049206 CGCAAAATTCTTCTTTTGGCGA 58.951 40.909 11.40 0.00 43.26 5.54
25 26 3.121362 CGCAAAATTCTTCTTTTGGCGAC 60.121 43.478 11.40 0.00 43.26 5.19
26 27 3.801594 GCAAAATTCTTCTTTTGGCGACA 59.198 39.130 10.31 0.00 43.26 4.35
38 39 4.243383 GCGACAAATGCCAACACC 57.757 55.556 0.00 0.00 0.00 4.16
39 40 1.659794 GCGACAAATGCCAACACCT 59.340 52.632 0.00 0.00 0.00 4.00
40 41 0.387239 GCGACAAATGCCAACACCTC 60.387 55.000 0.00 0.00 0.00 3.85
41 42 0.240945 CGACAAATGCCAACACCTCC 59.759 55.000 0.00 0.00 0.00 4.30
42 43 0.240945 GACAAATGCCAACACCTCCG 59.759 55.000 0.00 0.00 0.00 4.63
43 44 1.178534 ACAAATGCCAACACCTCCGG 61.179 55.000 0.00 0.00 0.00 5.14
44 45 1.152830 AAATGCCAACACCTCCGGT 59.847 52.632 0.00 0.00 35.62 5.28
54 55 1.228154 ACCTCCGGTGACCTTTTGC 60.228 57.895 4.76 0.00 32.98 3.68
55 56 2.325082 CCTCCGGTGACCTTTTGCG 61.325 63.158 4.76 0.00 0.00 4.85
56 57 1.301401 CTCCGGTGACCTTTTGCGA 60.301 57.895 0.00 0.00 0.00 5.10
57 58 0.673644 CTCCGGTGACCTTTTGCGAT 60.674 55.000 0.00 0.00 0.00 4.58
58 59 0.953471 TCCGGTGACCTTTTGCGATG 60.953 55.000 0.00 0.00 0.00 3.84
68 69 1.650153 CTTTTGCGATGCATTTGACCG 59.350 47.619 0.00 0.00 38.76 4.79
71 72 2.764314 GCGATGCATTTGACCGCCT 61.764 57.895 16.41 0.00 39.97 5.52
78 79 1.202222 GCATTTGACCGCCTGATCTTG 60.202 52.381 0.00 0.00 0.00 3.02
97 98 2.721167 CCGGAGATGGCTTCCACGA 61.721 63.158 0.00 0.00 35.80 4.35
100 101 0.250513 GGAGATGGCTTCCACGAGTT 59.749 55.000 0.00 0.00 35.80 3.01
101 102 1.646189 GAGATGGCTTCCACGAGTTC 58.354 55.000 0.00 0.00 35.80 3.01
102 103 0.250513 AGATGGCTTCCACGAGTTCC 59.749 55.000 0.00 0.00 35.80 3.62
105 106 2.434359 GCTTCCACGAGTTCCGGG 60.434 66.667 0.00 0.00 43.93 5.73
107 108 3.234630 CTTCCACGAGTTCCGGGCA 62.235 63.158 0.00 0.00 41.19 5.36
427 454 0.457443 CTCTGGCACGCTCATCTACA 59.543 55.000 0.00 0.00 0.00 2.74
490 526 3.786809 GGTGACGACGATGACTTCA 57.213 52.632 0.00 0.00 0.00 3.02
618 659 7.831753 ACTATGCTTGTATGATCTATAACGCT 58.168 34.615 0.00 0.00 0.00 5.07
660 705 0.455464 GCAAATCCGGCCACGTTTAC 60.455 55.000 2.24 0.00 38.78 2.01
684 729 3.634910 GGATCTATTCTATCGAGGAGGCC 59.365 52.174 0.00 0.00 0.00 5.19
738 784 0.385473 ACGAAATTTGCAAGACGCCG 60.385 50.000 0.00 4.16 41.33 6.46
739 785 1.065031 CGAAATTTGCAAGACGCCGG 61.065 55.000 0.00 0.00 41.33 6.13
744 790 1.361793 TTTGCAAGACGCCGGTATAC 58.638 50.000 1.90 0.00 41.33 1.47
745 791 0.533491 TTGCAAGACGCCGGTATACT 59.467 50.000 1.90 0.00 41.33 2.12
897 956 3.391382 CGGACCCCGCTTCTTCCT 61.391 66.667 0.00 0.00 41.17 3.36
1335 1396 1.491563 GACGCGCTGTCGATTTGTT 59.508 52.632 5.73 0.00 37.96 2.83
1336 1397 0.711670 GACGCGCTGTCGATTTGTTA 59.288 50.000 5.73 0.00 37.96 2.41
1337 1398 1.323534 GACGCGCTGTCGATTTGTTAT 59.676 47.619 5.73 0.00 37.96 1.89
1338 1399 1.323534 ACGCGCTGTCGATTTGTTATC 59.676 47.619 5.73 0.00 38.10 1.75
1339 1400 1.323235 CGCGCTGTCGATTTGTTATCA 59.677 47.619 5.56 0.00 38.10 2.15
1340 1401 2.694043 GCGCTGTCGATTTGTTATCAC 58.306 47.619 0.00 0.00 38.10 3.06
1341 1402 2.348666 GCGCTGTCGATTTGTTATCACT 59.651 45.455 0.00 0.00 38.10 3.41
1342 1403 3.181520 GCGCTGTCGATTTGTTATCACTT 60.182 43.478 0.00 0.00 38.10 3.16
1343 1404 4.669197 GCGCTGTCGATTTGTTATCACTTT 60.669 41.667 0.00 0.00 38.10 2.66
1344 1405 5.015733 CGCTGTCGATTTGTTATCACTTTC 58.984 41.667 0.00 0.00 38.10 2.62
1345 1406 5.163953 CGCTGTCGATTTGTTATCACTTTCT 60.164 40.000 0.00 0.00 38.10 2.52
1346 1407 6.603095 GCTGTCGATTTGTTATCACTTTCTT 58.397 36.000 0.00 0.00 0.00 2.52
1347 1408 6.738649 GCTGTCGATTTGTTATCACTTTCTTC 59.261 38.462 0.00 0.00 0.00 2.87
1348 1409 6.817396 TGTCGATTTGTTATCACTTTCTTCG 58.183 36.000 0.00 0.00 0.00 3.79
1349 1410 6.422701 TGTCGATTTGTTATCACTTTCTTCGT 59.577 34.615 0.00 0.00 0.00 3.85
1350 1411 6.732392 GTCGATTTGTTATCACTTTCTTCGTG 59.268 38.462 0.00 0.00 0.00 4.35
1351 1412 6.643360 TCGATTTGTTATCACTTTCTTCGTGA 59.357 34.615 0.00 0.00 44.59 4.35
1414 1475 9.942850 CTAATGATTGTTTCCCCTGTTTTAAAT 57.057 29.630 0.00 0.00 0.00 1.40
1649 1797 3.134623 CCAGAGTGTAGGCATCATGGTTA 59.865 47.826 0.00 0.00 0.00 2.85
1651 1799 5.371526 CAGAGTGTAGGCATCATGGTTATT 58.628 41.667 0.00 0.00 0.00 1.40
1652 1800 5.824624 CAGAGTGTAGGCATCATGGTTATTT 59.175 40.000 0.00 0.00 0.00 1.40
1653 1801 6.992123 CAGAGTGTAGGCATCATGGTTATTTA 59.008 38.462 0.00 0.00 0.00 1.40
2067 2215 7.331026 TCATTCTGTTCTTACTTAGGATGTGG 58.669 38.462 0.00 0.00 0.00 4.17
2078 2226 6.875972 ACTTAGGATGTGGACAGTTATCTT 57.124 37.500 0.00 0.00 0.00 2.40
2147 2295 2.949177 TTGGAGTGTATGGTGTGCTT 57.051 45.000 0.00 0.00 0.00 3.91
2157 2305 2.636647 TGGTGTGCTTGTTCTGATCA 57.363 45.000 0.00 0.00 0.00 2.92
2605 2758 3.003480 GCAACAGGTAAAGCTCGAGAAT 58.997 45.455 18.75 0.00 0.00 2.40
2608 2761 5.385617 CAACAGGTAAAGCTCGAGAATTTG 58.614 41.667 18.75 7.78 0.00 2.32
2802 2956 1.795872 TGCAAATGTTCACTACGTCCG 59.204 47.619 0.00 0.00 0.00 4.79
2808 2962 2.998772 TGTTCACTACGTCCGTTGTAC 58.001 47.619 6.60 4.03 33.22 2.90
2842 2996 6.513230 CGGATTGAACTTCACATCAAGTTTGA 60.513 38.462 0.00 0.00 44.91 2.69
2865 3019 2.712709 TGGTGACACGAAAAACAAGGA 58.287 42.857 0.00 0.00 33.40 3.36
2866 3020 3.283751 TGGTGACACGAAAAACAAGGAT 58.716 40.909 0.00 0.00 33.40 3.24
2910 3065 5.221601 TGTCCACGTACCTTTGGTTGTATTA 60.222 40.000 0.00 0.00 37.09 0.98
3038 3193 1.003118 TGCAGCCTTTCCGTCATACTT 59.997 47.619 0.00 0.00 0.00 2.24
3114 3269 7.362229 CCCTAAGGCTATGACGAGTATCTTTAG 60.362 44.444 0.00 0.00 0.00 1.85
3136 3291 0.712979 TCCCTGAGACCATCCTGAGT 59.287 55.000 0.00 0.00 0.00 3.41
3162 3317 2.623416 TCTACACCCTGATGCTATGTCG 59.377 50.000 0.00 0.00 0.00 4.35
3166 3321 2.136791 CCTGATGCTATGTCGGGGT 58.863 57.895 0.00 0.00 38.27 4.95
3199 3354 5.357032 CCTAACTAATTAGCAAAGTGGTGGG 59.643 44.000 12.54 0.00 37.12 4.61
3200 3355 3.089284 ACTAATTAGCAAAGTGGTGGGC 58.911 45.455 12.54 0.00 0.00 5.36
3212 3367 4.134623 GTGGGCACACGACTTTGA 57.865 55.556 1.77 0.00 37.94 2.69
3221 3376 3.303725 GCACACGACTTTGAATGCTACAA 60.304 43.478 0.00 0.00 0.00 2.41
3278 3433 6.702972 TGTTGTTTTTCACATGTCTTTGTG 57.297 33.333 0.00 0.00 46.70 3.33
3370 3525 6.959361 TGCTGATTGTCTAAGTTCACTTTTC 58.041 36.000 0.00 0.00 37.40 2.29
3429 3584 4.743151 CACTGCCATGATTGTGATAAATGC 59.257 41.667 0.00 0.00 32.72 3.56
3581 3736 1.885157 CCTGGCATGCACGTTCATT 59.115 52.632 21.36 0.00 0.00 2.57
3679 3834 2.432146 TCTGGACATCTGGTGCTGTATC 59.568 50.000 0.00 0.00 38.87 2.24
3695 3850 4.156556 GCTGTATCAACATTTTGAGGAGCA 59.843 41.667 13.44 4.68 45.07 4.26
3759 3914 3.224269 TGTCAATGCATATCCACCCATG 58.776 45.455 0.00 0.00 0.00 3.66
3803 3958 4.532126 AGATTACACTTCACCTGGTCATGA 59.468 41.667 0.00 0.00 0.00 3.07
3804 3959 4.908601 TTACACTTCACCTGGTCATGAT 57.091 40.909 0.00 0.00 0.00 2.45
3951 4106 9.677567 CAACATACCACATTATAATAGGCAAAC 57.322 33.333 13.40 0.00 0.00 2.93
3983 4140 9.612066 ATTTGGAGTCACACACAAATAAATTTT 57.388 25.926 0.00 0.00 40.56 1.82
4019 4176 1.338020 GTTTCATCGCCCATCCCATTC 59.662 52.381 0.00 0.00 0.00 2.67
4029 4186 3.491447 GCCCATCCCATTCGAATTCAAAG 60.491 47.826 8.21 0.00 0.00 2.77
4082 4309 3.201290 ACTTCGGAAGATGCTGCATTAG 58.799 45.455 23.74 6.95 41.60 1.73
4087 4314 5.978840 TCGGAAGATGCTGCATTAGCTTTG 61.979 45.833 17.36 11.54 44.37 2.77
4349 4867 3.736252 GCATAAGCACAGGTGTAGTATCG 59.264 47.826 0.91 0.00 41.58 2.92
4376 4894 5.163395 TGGATTAGTACACGTGGCATAATCA 60.163 40.000 29.55 20.67 33.37 2.57
4459 4977 1.091771 ATCGGCTTCATCCAACAGCG 61.092 55.000 0.00 0.00 34.09 5.18
4574 5092 9.109393 TCTGTTATTTTCATGTGGCTAATCTAC 57.891 33.333 0.00 0.00 0.00 2.59
4576 5094 9.461312 TGTTATTTTCATGTGGCTAATCTACTT 57.539 29.630 0.00 0.00 0.00 2.24
4743 5261 9.139174 AGTTACAAGTCAATTTGTTCAAAACTG 57.861 29.630 2.11 3.90 41.31 3.16
4758 5276 8.644216 TGTTCAAAACTGTCAATACTAGGTAGA 58.356 33.333 0.00 0.00 0.00 2.59
4854 5374 5.368230 ACCCTTTCTTAAATTTTGCTTCCCA 59.632 36.000 0.00 0.00 0.00 4.37
4874 5394 4.277174 CCCAATTTGGCCCTAAACAAAAAC 59.723 41.667 10.10 0.00 39.69 2.43
4901 5423 8.391075 TCTTCCCTTTTTGACACTATTTACAG 57.609 34.615 0.00 0.00 0.00 2.74
4959 5481 3.701040 ACCATTACATCCATTTGACCTGC 59.299 43.478 0.00 0.00 0.00 4.85
5088 5798 1.834263 CTGACCGAATCCTCTTCCCTT 59.166 52.381 0.00 0.00 0.00 3.95
5220 5947 2.203938 AGGCGGAAGGGGACAAGA 60.204 61.111 0.00 0.00 0.00 3.02
5235 5962 0.249447 CAAGACGGCTGCGGATATCA 60.249 55.000 14.45 0.00 0.00 2.15
5247 5974 0.106708 GGATATCACGAGCCAAGGCA 59.893 55.000 14.40 0.00 44.88 4.75
5284 6011 3.050339 CAAATGCCTTGGTGCGGT 58.950 55.556 0.00 0.00 0.00 5.68
5434 6163 1.597854 CTCTTGTTGCAGCCGGACA 60.598 57.895 5.05 0.00 0.00 4.02
5466 6195 1.618837 CTCCACTTCGAGGTTCTTCCA 59.381 52.381 0.00 0.00 39.02 3.53
5496 6225 0.534877 TGTGGCGAGCATTGAACTGT 60.535 50.000 0.00 0.00 0.00 3.55
5610 6339 1.740296 GCCCGTCGTGCAATGTAGT 60.740 57.895 0.00 0.00 0.00 2.73
5629 6358 2.421424 AGTTTGAGATTTCATCGGCAGC 59.579 45.455 0.00 0.00 32.27 5.25
5640 6369 0.320771 ATCGGCAGCACGAAGAACTT 60.321 50.000 9.60 0.00 46.92 2.66
5709 6449 4.755411 CCGCCTAGACTAACTCAAATTCA 58.245 43.478 0.00 0.00 0.00 2.57
5735 6475 1.250154 CCAAATCACCGGCACATGGT 61.250 55.000 0.00 0.00 41.47 3.55
5767 6507 1.062488 AGGGGTGCTCCTGAAGTTGT 61.062 55.000 4.53 0.00 35.47 3.32
5778 6518 4.792068 TCCTGAAGTTGTTGGACAAGATT 58.208 39.130 0.00 0.00 39.00 2.40
5788 6528 1.626321 TGGACAAGATTAAGACGGGCA 59.374 47.619 0.00 0.00 0.00 5.36
5790 6530 2.614481 GGACAAGATTAAGACGGGCACA 60.614 50.000 0.00 0.00 0.00 4.57
5791 6531 3.071479 GACAAGATTAAGACGGGCACAA 58.929 45.455 0.00 0.00 0.00 3.33
5825 6565 4.776647 GCATTGAACGGCGGTGCC 62.777 66.667 13.24 0.00 46.75 5.01
5865 6622 4.309950 GTGGACCTGTTCCCGCGT 62.310 66.667 4.92 0.00 45.17 6.01
5869 6626 3.509137 GACCTGTTCCCGCGTCACA 62.509 63.158 4.92 3.57 0.00 3.58
5888 6645 1.596477 GCCAAGCTAGGGATGAGCG 60.596 63.158 8.47 0.00 44.98 5.03
6064 6821 1.301479 GGACGGTTGCTTCGTTCCT 60.301 57.895 0.00 0.00 41.22 3.36
6066 6823 0.234884 GACGGTTGCTTCGTTCCTTG 59.765 55.000 0.00 0.00 41.22 3.61
6067 6824 0.463116 ACGGTTGCTTCGTTCCTTGT 60.463 50.000 0.00 0.00 37.61 3.16
6070 6827 2.288458 CGGTTGCTTCGTTCCTTGTTTA 59.712 45.455 0.00 0.00 0.00 2.01
6071 6828 3.624900 GGTTGCTTCGTTCCTTGTTTAC 58.375 45.455 0.00 0.00 0.00 2.01
6072 6829 3.314357 GGTTGCTTCGTTCCTTGTTTACT 59.686 43.478 0.00 0.00 0.00 2.24
6208 6966 2.230994 GAGCGAGCACATGGTCTCCA 62.231 60.000 9.24 0.00 40.17 3.86
6216 6974 3.709633 ATGGTCTCCAGCTGCGCA 61.710 61.111 10.98 10.98 36.75 6.09
6274 7032 1.300620 GCTGTGTGCGTGGTCTACA 60.301 57.895 0.00 0.00 0.00 2.74
6282 7040 1.153745 CGTGGTCTACAGCTGCTCC 60.154 63.158 15.27 11.51 0.00 4.70
6379 7137 5.404667 GGCTAATTATGTGTACTAGTTCCGC 59.595 44.000 0.00 0.00 0.00 5.54
6382 7140 2.273370 ATGTGTACTAGTTCCGCACG 57.727 50.000 0.00 0.00 33.23 5.34
6396 7154 1.540363 CCGCACGTGGGCTAATTAGAT 60.540 52.381 25.83 0.00 0.00 1.98
6403 7161 6.565999 GCACGTGGGCTAATTAGATGATTTAC 60.566 42.308 18.88 4.10 0.00 2.01
6441 7199 4.718858 TTTGGAACGTGATGAACTAACG 57.281 40.909 0.00 0.00 42.82 3.18
6497 7255 9.195411 ACACGTTTTATAGATGTTTTCTACGAA 57.805 29.630 0.00 0.00 39.75 3.85
6509 7267 9.607285 GATGTTTTCTACGAATTTTACACACAT 57.393 29.630 0.00 0.00 0.00 3.21
6532 7290 5.606348 AGATCAGTTTAGCTAAGGACCAG 57.394 43.478 6.24 0.00 0.00 4.00
6565 7323 1.978097 CAACATCGGTGAAAATGCACG 59.022 47.619 0.65 0.00 39.66 5.34
6593 7351 4.151070 CAAAATGGTCGTTTCATCTCACG 58.849 43.478 0.00 0.00 37.77 4.35
6599 7357 3.617263 GGTCGTTTCATCTCACGCTTAAT 59.383 43.478 0.00 0.00 36.32 1.40
6667 7427 8.934825 CAAAATTTACATTGGGTGTCAAATAGG 58.065 33.333 0.00 0.00 42.29 2.57
6668 7428 6.790232 ATTTACATTGGGTGTCAAATAGGG 57.210 37.500 0.00 0.00 42.29 3.53
6669 7429 5.522315 TTACATTGGGTGTCAAATAGGGA 57.478 39.130 0.00 0.00 42.29 4.20
6670 7430 4.396357 ACATTGGGTGTCAAATAGGGAA 57.604 40.909 0.00 0.00 35.77 3.97
6671 7431 4.344104 ACATTGGGTGTCAAATAGGGAAG 58.656 43.478 0.00 0.00 35.77 3.46
6672 7432 4.044065 ACATTGGGTGTCAAATAGGGAAGA 59.956 41.667 0.00 0.00 35.77 2.87
6673 7433 4.733077 TTGGGTGTCAAATAGGGAAGAA 57.267 40.909 0.00 0.00 31.46 2.52
6674 7434 4.946160 TGGGTGTCAAATAGGGAAGAAT 57.054 40.909 0.00 0.00 0.00 2.40
6675 7435 6.395780 TTGGGTGTCAAATAGGGAAGAATA 57.604 37.500 0.00 0.00 31.46 1.75
6676 7436 6.590656 TGGGTGTCAAATAGGGAAGAATAT 57.409 37.500 0.00 0.00 0.00 1.28
6677 7437 6.980577 TGGGTGTCAAATAGGGAAGAATATT 58.019 36.000 0.00 0.00 0.00 1.28
6678 7438 8.108378 TGGGTGTCAAATAGGGAAGAATATTA 57.892 34.615 0.00 0.00 0.00 0.98
6679 7439 8.732854 TGGGTGTCAAATAGGGAAGAATATTAT 58.267 33.333 0.00 0.00 0.00 1.28
6680 7440 9.588096 GGGTGTCAAATAGGGAAGAATATTATT 57.412 33.333 0.00 0.00 0.00 1.40
6686 7446 9.710900 CAAATAGGGAAGAATATTATTTTGGGC 57.289 33.333 0.00 0.00 0.00 5.36
6687 7447 8.435931 AATAGGGAAGAATATTATTTTGGGCC 57.564 34.615 0.00 0.00 0.00 5.80
6688 7448 5.787327 AGGGAAGAATATTATTTTGGGCCA 58.213 37.500 0.00 0.00 0.00 5.36
6689 7449 6.209026 AGGGAAGAATATTATTTTGGGCCAA 58.791 36.000 16.66 16.66 0.00 4.52
6690 7450 6.676189 AGGGAAGAATATTATTTTGGGCCAAA 59.324 34.615 27.28 27.28 0.00 3.28
6691 7451 7.350655 AGGGAAGAATATTATTTTGGGCCAAAT 59.649 33.333 30.82 21.74 33.19 2.32
6692 7452 8.655901 GGGAAGAATATTATTTTGGGCCAAATA 58.344 33.333 30.82 20.37 33.19 1.40
6693 7453 9.710900 GGAAGAATATTATTTTGGGCCAAATAG 57.289 33.333 30.82 0.00 33.19 1.73
6694 7454 9.710900 GAAGAATATTATTTTGGGCCAAATAGG 57.289 33.333 30.82 0.00 41.84 2.57
6709 7469 6.657117 GGCCAAATAGGGAAGCAAATTTTAAA 59.343 34.615 0.00 0.00 38.09 1.52
6739 7500 6.458888 GGCCAAATAAGGAATTCTCTCTTTCG 60.459 42.308 5.23 0.70 0.00 3.46
6755 7516 5.244402 TCTCTTTCGTTTACCATGTACTCCA 59.756 40.000 0.00 0.00 0.00 3.86
6804 7565 5.600696 AGTTTTGTCCTAAGCCAAACATTG 58.399 37.500 0.00 0.00 30.74 2.82
6808 7569 6.716934 TTGTCCTAAGCCAAACATTGTAAA 57.283 33.333 0.00 0.00 0.00 2.01
7010 7771 7.453393 CATGGAGGGAGTATAAAGCTCATTTA 58.547 38.462 0.00 0.00 37.75 1.40
7014 7775 7.993758 GGAGGGAGTATAAAGCTCATTTAGTTT 59.006 37.037 0.00 0.00 36.81 2.66
7050 7811 8.837788 AAAAGGTAAACTATGTACTACACACC 57.162 34.615 0.00 0.00 40.86 4.16
7051 7812 7.543359 AAGGTAAACTATGTACTACACACCA 57.457 36.000 0.00 0.00 40.86 4.17
7052 7813 7.543359 AGGTAAACTATGTACTACACACCAA 57.457 36.000 0.00 0.00 40.86 3.67
7053 7814 7.609056 AGGTAAACTATGTACTACACACCAAG 58.391 38.462 0.00 0.00 40.86 3.61
7100 7861 5.827666 ACAAACTGTACTGTTTATGTTGCC 58.172 37.500 24.83 0.00 37.98 4.52
7300 8061 5.668471 TCTCTTCTGAGCTCATATTGTTGG 58.332 41.667 18.63 2.66 40.03 3.77
7364 8125 7.607991 TCTTTTCTGGTTATCTCATGGAACTTC 59.392 37.037 0.00 0.00 0.00 3.01
7417 8178 7.962995 TTTATTGGTGTAATCCTATTGGCAA 57.037 32.000 0.68 0.68 0.00 4.52
7477 8239 7.801315 TGTTGATGTTTCATACGTAAGCTTTTC 59.199 33.333 3.20 0.00 45.62 2.29
7494 8256 2.472695 TTCCCTGGTCGTTTGATCTG 57.527 50.000 0.00 0.00 0.00 2.90
7589 8351 9.385902 CTTGAATTGTTAAGTTGAGTACATGTG 57.614 33.333 9.11 0.00 0.00 3.21
7619 8381 0.965866 CTTCGGGAAAAAGGAGGGGC 60.966 60.000 0.00 0.00 0.00 5.80
7749 8512 5.160641 CCCATACCACTTTGTCAATTTTCG 58.839 41.667 0.00 0.00 0.00 3.46
7797 8560 3.831323 CATATAATGCCTGTTGACCCCA 58.169 45.455 0.00 0.00 0.00 4.96
7798 8561 2.917713 ATAATGCCTGTTGACCCCAA 57.082 45.000 0.00 0.00 0.00 4.12
7799 8562 2.685106 TAATGCCTGTTGACCCCAAA 57.315 45.000 0.00 0.00 33.49 3.28
7800 8563 1.799933 AATGCCTGTTGACCCCAAAA 58.200 45.000 0.00 0.00 33.49 2.44
7801 8564 2.028561 ATGCCTGTTGACCCCAAAAT 57.971 45.000 0.00 0.00 33.49 1.82
7802 8565 1.047002 TGCCTGTTGACCCCAAAATG 58.953 50.000 0.00 0.00 33.49 2.32
7803 8566 1.047801 GCCTGTTGACCCCAAAATGT 58.952 50.000 0.00 0.00 33.49 2.71
7804 8567 1.000843 GCCTGTTGACCCCAAAATGTC 59.999 52.381 0.00 0.00 33.49 3.06
7805 8568 1.269448 CCTGTTGACCCCAAAATGTCG 59.731 52.381 0.00 0.00 34.18 4.35
7806 8569 0.671251 TGTTGACCCCAAAATGTCGC 59.329 50.000 0.00 0.00 34.18 5.19
7807 8570 0.671251 GTTGACCCCAAAATGTCGCA 59.329 50.000 0.00 0.00 34.18 5.10
7808 8571 0.671251 TTGACCCCAAAATGTCGCAC 59.329 50.000 0.00 0.00 34.18 5.34
7809 8572 0.179004 TGACCCCAAAATGTCGCACT 60.179 50.000 0.00 0.00 34.18 4.40
7810 8573 1.072489 TGACCCCAAAATGTCGCACTA 59.928 47.619 0.00 0.00 34.18 2.74
7811 8574 1.467342 GACCCCAAAATGTCGCACTAC 59.533 52.381 0.00 0.00 0.00 2.73
7812 8575 0.446222 CCCCAAAATGTCGCACTACG 59.554 55.000 0.00 0.00 45.62 3.51
7813 8576 0.446222 CCCAAAATGTCGCACTACGG 59.554 55.000 0.00 0.00 43.89 4.02
7814 8577 0.446222 CCAAAATGTCGCACTACGGG 59.554 55.000 0.00 0.00 43.89 5.28
7815 8578 0.179200 CAAAATGTCGCACTACGGGC 60.179 55.000 0.00 0.00 43.89 6.13
7859 8622 0.962489 ACCCAGCGAATAGAGGATCG 59.038 55.000 0.00 0.00 42.67 3.69
7882 8645 1.667236 GGCAAAAGCCAAAGCAAAGT 58.333 45.000 0.84 0.00 43.56 2.66
7884 8647 1.268184 GCAAAAGCCAAAGCAAAGTGC 60.268 47.619 0.00 0.00 45.46 4.40
7903 8666 0.254178 CTACACATGCCTGCCCTTCT 59.746 55.000 0.00 0.00 0.00 2.85
7904 8667 0.035152 TACACATGCCTGCCCTTCTG 60.035 55.000 0.00 0.00 0.00 3.02
7925 8688 1.866880 GCGCATGGCTGGAATTTGATC 60.867 52.381 0.30 0.00 39.11 2.92
8042 8814 4.251169 TGGCTGAATTCCCCCTTCTATAT 58.749 43.478 2.27 0.00 0.00 0.86
8043 8815 4.289672 TGGCTGAATTCCCCCTTCTATATC 59.710 45.833 2.27 0.00 0.00 1.63
8158 8933 4.099170 CGCTCCAGCTTGCTGTGC 62.099 66.667 19.49 19.74 39.32 4.57
8262 9037 3.002656 CGTTCAGTAAAGGCATATGCAGG 59.997 47.826 28.07 7.06 44.36 4.85
8396 9171 0.250510 TGCCGGTGCTGTTGATACAA 60.251 50.000 1.90 0.00 38.71 2.41
8397 9172 0.878416 GCCGGTGCTGTTGATACAAA 59.122 50.000 1.90 0.00 32.92 2.83
8407 9226 5.030295 GCTGTTGATACAAACCATCATTCG 58.970 41.667 0.00 0.00 32.63 3.34
8521 9340 1.780860 GCGACAAGAAAATGTGTGTGC 59.219 47.619 0.00 0.00 32.57 4.57
8565 9384 6.604171 TGTCCCTATGATATGAGCAACATTT 58.396 36.000 2.03 0.00 40.07 2.32
8574 9393 7.307694 TGATATGAGCAACATTTGACTGAAAC 58.692 34.615 2.03 0.00 40.07 2.78
8582 9401 6.566753 GCAACATTTGACTGAAACTAGGTCTC 60.567 42.308 0.00 0.00 0.00 3.36
8658 9477 3.472652 TCGAGTTGTGGTTGTTTATGCT 58.527 40.909 0.00 0.00 0.00 3.79
8664 9483 2.739913 TGTGGTTGTTTATGCTAGCGTC 59.260 45.455 14.00 0.00 0.00 5.19
8683 9504 4.084485 GCGTCCAGTTTACTCTCTGTTTTC 60.084 45.833 0.00 0.00 0.00 2.29
8716 9537 8.251026 GGCTAAGTTCAGTTAAGCCATTTTATT 58.749 33.333 7.14 0.00 40.37 1.40
8726 9672 9.174166 AGTTAAGCCATTTTATTTCTCGTGTAT 57.826 29.630 0.00 0.00 0.00 2.29
8764 9710 9.796120 CAAATTGTTTGAAGTTCTAGGTTTGTA 57.204 29.630 4.17 0.00 43.26 2.41
8809 9757 7.661847 AGTTTGACCAATCTAGGACAAAGTTAG 59.338 37.037 10.07 0.00 46.98 2.34
8917 9949 5.039984 CGAGTATCTTGTGAACTCATCTGG 58.960 45.833 0.00 0.00 39.69 3.86
9020 10702 4.803426 GCACCGGCTGAGACCTCG 62.803 72.222 0.00 0.00 36.96 4.63
9106 10788 5.221501 CCAAAGTCCATCTGTTTGGTCATTT 60.222 40.000 5.13 0.00 43.53 2.32
9107 10789 5.712152 AAGTCCATCTGTTTGGTCATTTC 57.288 39.130 0.00 0.00 38.01 2.17
9108 10790 4.082125 AGTCCATCTGTTTGGTCATTTCC 58.918 43.478 0.00 0.00 38.01 3.13
9109 10791 4.082125 GTCCATCTGTTTGGTCATTTCCT 58.918 43.478 0.00 0.00 38.01 3.36
9110 10792 4.156739 GTCCATCTGTTTGGTCATTTCCTC 59.843 45.833 0.00 0.00 38.01 3.71
9111 10793 4.043310 TCCATCTGTTTGGTCATTTCCTCT 59.957 41.667 0.00 0.00 38.01 3.69
9112 10794 4.768968 CCATCTGTTTGGTCATTTCCTCTT 59.231 41.667 0.00 0.00 31.74 2.85
9154 10836 6.238953 CGTCTCTTTCGATAAAAGGGGAGATA 60.239 42.308 0.00 0.00 44.38 1.98
9206 10888 6.220201 TGCTGTAAAATATATACTCGCTGCA 58.780 36.000 0.00 0.00 0.00 4.41
9207 10889 6.145534 TGCTGTAAAATATATACTCGCTGCAC 59.854 38.462 0.00 0.00 0.00 4.57
9217 10899 1.003476 TCGCTGCACCATGATGTGT 60.003 52.632 0.00 0.00 38.52 3.72
9222 10904 2.479049 GCTGCACCATGATGTGTCATTC 60.479 50.000 0.00 0.00 42.37 2.67
9230 10912 6.018180 CACCATGATGTGTCATTCTGTCATAG 60.018 42.308 0.00 0.00 42.37 2.23
9231 10913 6.053650 CCATGATGTGTCATTCTGTCATAGT 58.946 40.000 0.00 0.00 42.37 2.12
9232 10914 7.147672 ACCATGATGTGTCATTCTGTCATAGTA 60.148 37.037 0.00 0.00 42.37 1.82
9233 10915 7.712205 CCATGATGTGTCATTCTGTCATAGTAA 59.288 37.037 0.00 0.00 42.37 2.24
9234 10916 8.762426 CATGATGTGTCATTCTGTCATAGTAAG 58.238 37.037 0.00 0.00 42.37 2.34
9235 10917 7.840931 TGATGTGTCATTCTGTCATAGTAAGT 58.159 34.615 0.00 0.00 0.00 2.24
9236 10918 8.966868 TGATGTGTCATTCTGTCATAGTAAGTA 58.033 33.333 0.00 0.00 0.00 2.24
9237 10919 9.973450 GATGTGTCATTCTGTCATAGTAAGTAT 57.027 33.333 0.00 0.00 0.00 2.12
9247 10929 9.910267 TCTGTCATAGTAAGTATTAGTGGTACA 57.090 33.333 0.00 0.00 34.53 2.90
9249 10931 8.627403 TGTCATAGTAAGTATTAGTGGTACAGC 58.373 37.037 0.00 0.00 41.80 4.40
9250 10932 8.627403 GTCATAGTAAGTATTAGTGGTACAGCA 58.373 37.037 0.00 0.00 41.80 4.41
9251 10933 8.627403 TCATAGTAAGTATTAGTGGTACAGCAC 58.373 37.037 3.37 3.37 41.80 4.40
9252 10934 6.845758 AGTAAGTATTAGTGGTACAGCACA 57.154 37.500 13.52 0.00 41.80 4.57
9253 10935 7.419711 AGTAAGTATTAGTGGTACAGCACAT 57.580 36.000 13.52 2.62 41.80 3.21
9254 10936 7.848128 AGTAAGTATTAGTGGTACAGCACATT 58.152 34.615 13.52 1.27 41.80 2.71
9255 10937 7.980099 AGTAAGTATTAGTGGTACAGCACATTC 59.020 37.037 13.52 0.00 41.80 2.67
9256 10938 5.671493 AGTATTAGTGGTACAGCACATTCC 58.329 41.667 13.52 0.00 41.80 3.01
9257 10939 4.844349 ATTAGTGGTACAGCACATTCCT 57.156 40.909 13.52 0.00 41.80 3.36
9258 10940 2.479566 AGTGGTACAGCACATTCCTG 57.520 50.000 13.52 0.00 41.80 3.86
9259 10941 1.003580 AGTGGTACAGCACATTCCTGG 59.996 52.381 13.52 0.00 41.80 4.45
9260 10942 0.322456 TGGTACAGCACATTCCTGGC 60.322 55.000 0.00 0.00 34.65 4.85
9261 10943 0.035056 GGTACAGCACATTCCTGGCT 60.035 55.000 0.00 0.00 38.70 4.75
9280 10962 2.354259 CTGAGGTTTGATCTGTCAGGC 58.646 52.381 0.00 0.00 35.39 4.85
9358 11048 4.839668 TGCATACGCCACTTTTAAAACT 57.160 36.364 0.00 0.00 37.32 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.155539 CCAAAAGAAGAATTTTGCGGCG 59.844 45.455 0.51 0.51 44.93 6.46
3 4 3.049206 TCGCCAAAAGAAGAATTTTGCG 58.951 40.909 10.12 10.12 44.93 4.85
4 5 3.801594 TGTCGCCAAAAGAAGAATTTTGC 59.198 39.130 6.44 2.70 44.93 3.68
5 6 5.964887 TTGTCGCCAAAAGAAGAATTTTG 57.035 34.783 5.21 5.21 45.55 2.44
6 7 6.511605 GCATTTGTCGCCAAAAGAAGAATTTT 60.512 34.615 0.00 0.00 43.43 1.82
7 8 5.050159 GCATTTGTCGCCAAAAGAAGAATTT 60.050 36.000 0.00 0.00 43.43 1.82
8 9 4.448732 GCATTTGTCGCCAAAAGAAGAATT 59.551 37.500 0.00 0.00 43.43 2.17
9 10 3.989817 GCATTTGTCGCCAAAAGAAGAAT 59.010 39.130 0.00 0.00 43.43 2.40
10 11 3.380142 GCATTTGTCGCCAAAAGAAGAA 58.620 40.909 0.00 0.00 43.43 2.52
11 12 3.011949 GCATTTGTCGCCAAAAGAAGA 57.988 42.857 0.00 0.00 43.43 2.87
21 22 0.387239 GAGGTGTTGGCATTTGTCGC 60.387 55.000 0.00 0.00 0.00 5.19
22 23 0.240945 GGAGGTGTTGGCATTTGTCG 59.759 55.000 0.00 0.00 0.00 4.35
23 24 0.240945 CGGAGGTGTTGGCATTTGTC 59.759 55.000 0.00 0.00 0.00 3.18
24 25 2.340427 CGGAGGTGTTGGCATTTGT 58.660 52.632 0.00 0.00 0.00 2.83
38 39 0.673644 ATCGCAAAAGGTCACCGGAG 60.674 55.000 9.46 0.00 0.00 4.63
39 40 0.953471 CATCGCAAAAGGTCACCGGA 60.953 55.000 9.46 0.00 0.00 5.14
40 41 1.501741 CATCGCAAAAGGTCACCGG 59.498 57.895 0.00 0.00 0.00 5.28
41 42 1.154225 GCATCGCAAAAGGTCACCG 60.154 57.895 0.00 0.00 0.00 4.94
42 43 0.527565 ATGCATCGCAAAAGGTCACC 59.472 50.000 0.00 0.00 43.62 4.02
43 44 2.352503 AATGCATCGCAAAAGGTCAC 57.647 45.000 0.00 0.00 43.62 3.67
44 45 2.295629 TCAAATGCATCGCAAAAGGTCA 59.704 40.909 0.00 0.00 43.62 4.02
45 46 2.663119 GTCAAATGCATCGCAAAAGGTC 59.337 45.455 0.00 0.00 43.62 3.85
46 47 2.610232 GGTCAAATGCATCGCAAAAGGT 60.610 45.455 0.00 0.00 43.62 3.50
47 48 1.994779 GGTCAAATGCATCGCAAAAGG 59.005 47.619 0.00 0.00 43.62 3.11
48 49 1.650153 CGGTCAAATGCATCGCAAAAG 59.350 47.619 0.00 0.00 43.62 2.27
49 50 1.695813 CGGTCAAATGCATCGCAAAA 58.304 45.000 0.00 0.00 43.62 2.44
50 51 0.732196 GCGGTCAAATGCATCGCAAA 60.732 50.000 20.79 0.00 43.62 3.68
51 52 1.154054 GCGGTCAAATGCATCGCAA 60.154 52.632 20.79 0.00 43.62 4.85
52 53 2.484662 GCGGTCAAATGCATCGCA 59.515 55.556 20.79 0.00 44.87 5.10
53 54 2.278142 GGCGGTCAAATGCATCGC 60.278 61.111 18.37 18.37 44.80 4.58
54 55 1.063006 CAGGCGGTCAAATGCATCG 59.937 57.895 0.00 0.00 0.00 3.84
55 56 1.002033 GATCAGGCGGTCAAATGCATC 60.002 52.381 0.00 0.00 0.00 3.91
56 57 1.027357 GATCAGGCGGTCAAATGCAT 58.973 50.000 0.00 0.00 0.00 3.96
57 58 0.035152 AGATCAGGCGGTCAAATGCA 60.035 50.000 0.00 0.00 0.00 3.96
58 59 1.098050 AAGATCAGGCGGTCAAATGC 58.902 50.000 0.00 0.00 0.00 3.56
68 69 0.883814 CATCTCCGGCAAGATCAGGC 60.884 60.000 2.70 0.00 33.68 4.85
89 90 2.434359 GCCCGGAACTCGTGGAAG 60.434 66.667 0.73 0.00 37.11 3.46
90 91 2.589157 ATGCCCGGAACTCGTGGAA 61.589 57.895 0.73 0.00 37.11 3.53
342 369 2.099062 GCCGCAACTGCATCTTCG 59.901 61.111 2.12 0.00 42.21 3.79
344 371 3.434319 CGGCCGCAACTGCATCTT 61.434 61.111 14.67 0.00 42.21 2.40
427 454 1.227438 CGTTGTCGTGGAGGGTGTT 60.227 57.895 0.00 0.00 0.00 3.32
490 526 2.649531 ACTAGCATCTACTCCTCGCT 57.350 50.000 0.00 0.00 36.72 4.93
546 585 1.004610 CGCACAAAGCACATCGATAGG 60.005 52.381 0.00 0.00 46.13 2.57
614 655 6.097356 TCGATTTGAAACATCTAGTTAGCGT 58.903 36.000 0.00 0.00 40.26 5.07
615 656 6.253727 ACTCGATTTGAAACATCTAGTTAGCG 59.746 38.462 0.00 0.00 40.26 4.26
618 659 6.871492 TGCACTCGATTTGAAACATCTAGTTA 59.129 34.615 0.00 0.00 40.26 2.24
897 956 1.286880 GGAGACGACGTTTTCCGGA 59.713 57.895 14.27 0.00 42.24 5.14
1173 1232 0.900182 AGACCACGTGCATCAGGAGA 60.900 55.000 10.91 0.00 0.00 3.71
1304 1365 2.908626 CAGCGCGTCTTAAATTTGGAAC 59.091 45.455 8.43 0.00 0.00 3.62
1335 1396 2.230508 ACGCCTCACGAAGAAAGTGATA 59.769 45.455 0.00 0.00 46.07 2.15
1336 1397 1.000955 ACGCCTCACGAAGAAAGTGAT 59.999 47.619 0.00 0.00 46.07 3.06
1348 1409 1.782181 GAAGCTTCGAACGCCTCAC 59.218 57.895 11.40 0.00 0.00 3.51
1349 1410 4.261888 GAAGCTTCGAACGCCTCA 57.738 55.556 11.40 0.00 0.00 3.86
1430 1491 7.884257 AGCTACCTTTCCTCGTAGAATTATAC 58.116 38.462 0.00 0.00 35.03 1.47
1434 1495 5.678955 AAGCTACCTTTCCTCGTAGAATT 57.321 39.130 0.00 0.00 35.03 2.17
1514 1575 9.655769 GCATGTTATTATCACTGTGTAGAATTG 57.344 33.333 7.79 3.40 0.00 2.32
2039 2187 8.375506 ACATCCTAAGTAAGAACAGAATGAACA 58.624 33.333 0.00 0.00 39.69 3.18
2042 2190 7.180229 TCCACATCCTAAGTAAGAACAGAATGA 59.820 37.037 0.00 0.00 39.69 2.57
2054 2202 7.973048 AAGATAACTGTCCACATCCTAAGTA 57.027 36.000 0.00 0.00 0.00 2.24
2089 2237 8.461249 AAATGATACCAAATGAAGATCCTCAG 57.539 34.615 0.00 0.00 0.00 3.35
2147 2295 1.275010 TGCGCTAAGGTGATCAGAACA 59.725 47.619 9.73 0.00 0.00 3.18
2157 2305 4.159879 AGTGTAGAAGTATTGCGCTAAGGT 59.840 41.667 9.73 0.00 0.00 3.50
2235 2387 3.055891 TCAGGCACTTCGAGATTCAATCA 60.056 43.478 0.00 0.00 34.60 2.57
2686 2840 3.691609 GCAAGTCCAATCCCTACAAAGAG 59.308 47.826 0.00 0.00 0.00 2.85
2802 2956 7.305474 AGTTCAATCCGATGATTTTGTACAAC 58.695 34.615 8.07 0.00 39.20 3.32
2808 2962 6.380995 TGTGAAGTTCAATCCGATGATTTTG 58.619 36.000 7.25 0.00 39.20 2.44
2839 2993 3.502595 TGTTTTTCGTGTCACCAACTCAA 59.497 39.130 0.00 0.00 0.00 3.02
2842 2996 3.119637 CCTTGTTTTTCGTGTCACCAACT 60.120 43.478 0.00 0.00 0.00 3.16
2872 3026 3.196901 ACGTGGACATAACTCATGGCTAA 59.803 43.478 0.00 0.00 42.96 3.09
2910 3065 5.163374 ACCAGTGACGTAAGGAGTTTAGTTT 60.163 40.000 0.00 0.00 46.39 2.66
2980 3135 8.083462 TCAACTGTATCACGTTACAATCAACTA 58.917 33.333 2.01 0.00 31.96 2.24
2991 3146 6.328641 AGACTACTTCAACTGTATCACGTT 57.671 37.500 0.00 0.00 0.00 3.99
2992 3147 5.961396 AGACTACTTCAACTGTATCACGT 57.039 39.130 0.00 0.00 0.00 4.49
2994 3149 8.596380 GCAAATAGACTACTTCAACTGTATCAC 58.404 37.037 0.00 0.00 0.00 3.06
3000 3155 5.163814 GGCTGCAAATAGACTACTTCAACTG 60.164 44.000 0.50 0.00 0.00 3.16
3038 3193 9.421806 CAATACAATGAAACCATTTAGAGCAAA 57.578 29.630 0.00 0.00 32.29 3.68
3114 3269 1.383803 AGGATGGTCTCAGGGAGCC 60.384 63.158 0.00 0.00 41.34 4.70
3136 3291 2.540383 AGCATCAGGGTGTAGAAGACA 58.460 47.619 0.00 0.00 34.94 3.41
3162 3317 9.064706 GCTAATTAGTTAGGAATTAGAAACCCC 57.935 37.037 13.91 0.00 44.42 4.95
3199 3354 2.223144 TGTAGCATTCAAAGTCGTGTGC 59.777 45.455 0.00 0.00 0.00 4.57
3200 3355 4.466567 TTGTAGCATTCAAAGTCGTGTG 57.533 40.909 0.00 0.00 0.00 3.82
3370 3525 3.119495 GGCTGCAAAAGTGTAATGTAGGG 60.119 47.826 0.50 0.00 0.00 3.53
3429 3584 2.480419 GTGATGGTCAAACTGAAGGACG 59.520 50.000 0.00 0.00 32.39 4.79
3679 3834 3.192844 AGAGCATGCTCCTCAAAATGTTG 59.807 43.478 37.79 0.00 43.70 3.33
3803 3958 8.802267 TGGAGATAAAAACGAAATCCAGAAAAT 58.198 29.630 0.00 0.00 31.89 1.82
3804 3959 8.172352 TGGAGATAAAAACGAAATCCAGAAAA 57.828 30.769 0.00 0.00 31.89 2.29
3946 4101 6.072728 TGTGTGACTCCAAATGTATAGTTTGC 60.073 38.462 5.42 0.00 35.71 3.68
3951 4106 7.433708 TTTGTGTGTGACTCCAAATGTATAG 57.566 36.000 0.00 0.00 0.00 1.31
3983 4140 8.609176 GGCGATGAAACTTAAAACATACATCTA 58.391 33.333 0.00 0.00 33.26 1.98
3993 4150 3.445805 GGGATGGGCGATGAAACTTAAAA 59.554 43.478 0.00 0.00 0.00 1.52
4062 4289 3.874400 CTAATGCAGCATCTTCCGAAG 57.126 47.619 8.77 1.30 0.00 3.79
4158 4675 5.814764 TGTTCTAGACTCTTCCATACGTC 57.185 43.478 0.00 0.00 0.00 4.34
4159 4676 6.585695 TTTGTTCTAGACTCTTCCATACGT 57.414 37.500 0.00 0.00 0.00 3.57
4230 4748 8.417780 TGTTAAAAGAACACCATTCATGTTTG 57.582 30.769 0.00 0.00 40.36 2.93
4345 4863 4.274214 CCACGTGTACTAATCCAGACGATA 59.726 45.833 15.65 0.00 0.00 2.92
4349 4867 2.094390 TGCCACGTGTACTAATCCAGAC 60.094 50.000 15.65 0.00 0.00 3.51
4376 4894 5.715439 TGGATATTCTCTCCACCACATTT 57.285 39.130 0.00 0.00 37.87 2.32
4509 5027 7.642071 AATGTGTTTTCAGAACATTATGTGC 57.358 32.000 0.00 0.00 41.49 4.57
4511 5029 9.814899 TCAAAATGTGTTTTCAGAACATTATGT 57.185 25.926 0.00 0.00 42.24 2.29
4574 5092 8.543774 CAACTTCAACTTCGGCTATATCTTAAG 58.456 37.037 0.00 0.00 0.00 1.85
4576 5094 7.778083 TCAACTTCAACTTCGGCTATATCTTA 58.222 34.615 0.00 0.00 0.00 2.10
4758 5276 8.393366 CACGTCAGTTCAAATATTTCAGATCAT 58.607 33.333 0.00 0.00 0.00 2.45
4781 5299 3.809832 GGGTTCATCCATCATCTAACACG 59.190 47.826 0.00 0.00 38.11 4.49
4854 5374 6.658849 AGAAGTTTTTGTTTAGGGCCAAATT 58.341 32.000 6.18 0.00 31.20 1.82
4874 5394 8.846211 TGTAAATAGTGTCAAAAAGGGAAGAAG 58.154 33.333 0.00 0.00 0.00 2.85
4901 5423 6.317893 ACGGAAATGTCATATAGGGAACAAAC 59.682 38.462 0.00 0.00 0.00 2.93
4959 5481 4.599041 TGGTCCATGGAAGAAAATACTGG 58.401 43.478 18.20 0.00 0.00 4.00
5037 5747 3.697045 GAGAGGAGAGAAAGGTTCGATCA 59.303 47.826 0.00 0.00 34.02 2.92
5088 5798 2.952978 GGGAGAGAGCGAGTTCTATCAA 59.047 50.000 12.30 0.00 37.20 2.57
5160 5870 2.270205 CCACAGCCACAGCCCTAG 59.730 66.667 0.00 0.00 41.25 3.02
5220 5947 2.027605 CGTGATATCCGCAGCCGT 59.972 61.111 0.00 0.00 0.00 5.68
5247 5974 2.602568 AACTACCACCTCCGCCGT 60.603 61.111 0.00 0.00 0.00 5.68
5284 6011 1.005867 GTGTTCACCTACGGCCGAA 60.006 57.895 35.90 12.08 0.00 4.30
5358 6085 3.121030 GCACTACTGTGGCCTGCG 61.121 66.667 3.32 0.00 43.97 5.18
5386 6113 4.020662 CCTAGAAGACAGGAGAAGCTGTTT 60.021 45.833 0.00 0.00 34.91 2.83
5434 6163 2.097825 GAAGTGGAGCTTTGCATGGAT 58.902 47.619 0.00 0.00 37.59 3.41
5496 6225 4.573201 CGGCTAATTCGATAAAACCTTGGA 59.427 41.667 0.00 0.00 0.00 3.53
5535 6264 3.069872 ACAATCTTGCATCAAACAAGGCA 59.930 39.130 3.87 0.00 43.79 4.75
5606 6335 4.494855 GCTGCCGATGAAATCTCAAACTAC 60.495 45.833 0.00 0.00 42.58 2.73
5610 6339 2.162208 GTGCTGCCGATGAAATCTCAAA 59.838 45.455 0.00 0.00 42.58 2.69
5629 6358 5.568482 TGAAACATCAACAAGTTCTTCGTG 58.432 37.500 0.00 0.00 0.00 4.35
5686 6426 2.667473 TTTGAGTTAGTCTAGGCGGC 57.333 50.000 0.00 0.00 0.00 6.53
5709 6449 1.271871 TGCCGGTGATTTGGTGAGATT 60.272 47.619 1.90 0.00 0.00 2.40
5751 6491 0.954452 CCAACAACTTCAGGAGCACC 59.046 55.000 0.00 0.00 0.00 5.01
5764 6504 4.069304 CCCGTCTTAATCTTGTCCAACAA 58.931 43.478 0.00 0.00 36.54 2.83
5767 6507 2.039216 TGCCCGTCTTAATCTTGTCCAA 59.961 45.455 0.00 0.00 0.00 3.53
5778 6518 0.947180 GCTTCGTTGTGCCCGTCTTA 60.947 55.000 0.00 0.00 0.00 2.10
5825 6565 1.626654 GACAATGTCCGTCACCTGCG 61.627 60.000 1.10 0.00 33.43 5.18
5865 6622 0.543277 CATCCCTAGCTTGGCTGTGA 59.457 55.000 8.91 0.98 40.10 3.58
5869 6626 1.835693 GCTCATCCCTAGCTTGGCT 59.164 57.895 8.91 0.00 43.41 4.75
5888 6645 1.112113 TGGTCGTTAGATCAGAGGGC 58.888 55.000 0.00 0.00 31.44 5.19
6049 6806 0.661020 AACAAGGAACGAAGCAACCG 59.339 50.000 0.00 0.00 0.00 4.44
6064 6821 7.335627 TCTCCTGAAAAGAGTTCAGTAAACAA 58.664 34.615 13.48 0.00 43.19 2.83
6066 6823 7.971183 ATCTCCTGAAAAGAGTTCAGTAAAC 57.029 36.000 13.48 0.00 43.19 2.01
6067 6824 8.314751 CCTATCTCCTGAAAAGAGTTCAGTAAA 58.685 37.037 13.48 1.23 43.19 2.01
6070 6827 5.782845 ACCTATCTCCTGAAAAGAGTTCAGT 59.217 40.000 13.48 0.25 43.19 3.41
6071 6828 6.154363 AGACCTATCTCCTGAAAAGAGTTCAG 59.846 42.308 8.76 8.76 44.05 3.02
6072 6829 6.019748 AGACCTATCTCCTGAAAAGAGTTCA 58.980 40.000 0.00 0.00 32.93 3.18
6187 6945 0.390340 GAGACCATGTGCTCGCTCAA 60.390 55.000 0.00 0.00 0.00 3.02
6188 6946 1.216444 GAGACCATGTGCTCGCTCA 59.784 57.895 0.00 0.00 0.00 4.26
6274 7032 2.284921 TACTGGCCAGGAGCAGCT 60.285 61.111 35.42 15.99 46.50 4.24
6321 7079 3.849951 CCGGCAGCCGTAGACCAT 61.850 66.667 31.68 0.00 46.80 3.55
6379 7137 6.706270 AGTAAATCATCTAATTAGCCCACGTG 59.294 38.462 9.08 9.08 0.00 4.49
6382 7140 9.209175 CACTAGTAAATCATCTAATTAGCCCAC 57.791 37.037 7.67 0.00 0.00 4.61
6396 7154 8.615878 AAAGCATTACACACACTAGTAAATCA 57.384 30.769 0.00 0.00 34.27 2.57
6403 7161 5.940192 TCCAAAAGCATTACACACACTAG 57.060 39.130 0.00 0.00 0.00 2.57
6497 7255 9.672673 AGCTAAACTGATCTATGTGTGTAAAAT 57.327 29.630 0.00 0.00 0.00 1.82
6509 7267 6.432581 TCTGGTCCTTAGCTAAACTGATCTA 58.567 40.000 7.74 0.00 0.00 1.98
6514 7272 7.227512 CCAATATTCTGGTCCTTAGCTAAACTG 59.772 40.741 7.74 0.00 0.00 3.16
6532 7290 3.627577 ACCGATGTTGCACTCCAATATTC 59.372 43.478 0.00 0.00 35.68 1.75
6565 7323 0.966179 AAACGACCATTTTGCCCCTC 59.034 50.000 0.00 0.00 0.00 4.30
6593 7351 8.333186 CCATTTTAGACACTAACGGTATTAAGC 58.667 37.037 0.00 0.00 0.00 3.09
6599 7357 5.401550 CGTCCATTTTAGACACTAACGGTA 58.598 41.667 0.00 0.00 33.70 4.02
6629 7387 9.260002 CCAATGTAAATTTTGTTCCCTATATGC 57.740 33.333 0.00 0.00 0.00 3.14
6667 7427 9.710900 CTATTTGGCCCAAAATAATATTCTTCC 57.289 33.333 13.87 0.00 36.90 3.46
6668 7428 9.710900 CCTATTTGGCCCAAAATAATATTCTTC 57.289 33.333 13.87 0.00 36.90 2.87
6669 7429 8.659527 CCCTATTTGGCCCAAAATAATATTCTT 58.340 33.333 13.87 0.00 36.90 2.52
6670 7430 8.016054 TCCCTATTTGGCCCAAAATAATATTCT 58.984 33.333 13.87 0.00 36.90 2.40
6671 7431 8.201242 TCCCTATTTGGCCCAAAATAATATTC 57.799 34.615 13.87 0.00 36.90 1.75
6672 7432 8.574309 TTCCCTATTTGGCCCAAAATAATATT 57.426 30.769 13.87 0.00 36.90 1.28
6673 7433 7.256655 GCTTCCCTATTTGGCCCAAAATAATAT 60.257 37.037 13.87 0.00 36.90 1.28
6674 7434 6.042666 GCTTCCCTATTTGGCCCAAAATAATA 59.957 38.462 13.87 0.00 36.90 0.98
6675 7435 5.163205 GCTTCCCTATTTGGCCCAAAATAAT 60.163 40.000 13.87 0.00 36.90 1.28
6676 7436 4.163268 GCTTCCCTATTTGGCCCAAAATAA 59.837 41.667 13.87 1.14 36.90 1.40
6677 7437 3.709141 GCTTCCCTATTTGGCCCAAAATA 59.291 43.478 13.87 4.09 36.90 1.40
6678 7438 2.505407 GCTTCCCTATTTGGCCCAAAAT 59.495 45.455 13.87 2.91 36.90 1.82
6679 7439 1.905894 GCTTCCCTATTTGGCCCAAAA 59.094 47.619 13.87 2.17 36.90 2.44
6680 7440 1.203237 TGCTTCCCTATTTGGCCCAAA 60.203 47.619 12.07 12.07 37.75 3.28
6681 7441 0.411452 TGCTTCCCTATTTGGCCCAA 59.589 50.000 0.00 0.00 0.00 4.12
6682 7442 0.411452 TTGCTTCCCTATTTGGCCCA 59.589 50.000 0.00 0.00 0.00 5.36
6683 7443 1.567357 TTTGCTTCCCTATTTGGCCC 58.433 50.000 0.00 0.00 0.00 5.80
6684 7444 3.912496 AATTTGCTTCCCTATTTGGCC 57.088 42.857 0.00 0.00 0.00 5.36
6685 7445 7.680442 TTTAAAATTTGCTTCCCTATTTGGC 57.320 32.000 0.00 0.00 0.00 4.52
6709 7469 7.455953 AGAGAGAATTCCTTATTTGGCCTTTTT 59.544 33.333 3.32 0.00 0.00 1.94
6713 7473 5.723860 AGAGAGAATTCCTTATTTGGCCT 57.276 39.130 3.32 0.00 0.00 5.19
6716 7476 7.617041 ACGAAAGAGAGAATTCCTTATTTGG 57.383 36.000 0.65 4.89 0.00 3.28
6739 7500 5.701290 GGCATAGATGGAGTACATGGTAAAC 59.299 44.000 0.00 0.00 40.72 2.01
6787 7548 7.870445 TCAAATTTACAATGTTTGGCTTAGGAC 59.130 33.333 0.00 0.00 34.48 3.85
6835 7596 6.419484 TCCAATGGTATTGTAGATGTCGAT 57.581 37.500 0.00 0.00 0.00 3.59
6975 7736 6.718593 ATACTCCCTCCATGCCAAAATATA 57.281 37.500 0.00 0.00 0.00 0.86
6976 7737 3.979501 ACTCCCTCCATGCCAAAATAT 57.020 42.857 0.00 0.00 0.00 1.28
7032 7793 6.110411 AGCTTGGTGTGTAGTACATAGTTT 57.890 37.500 6.21 0.00 42.24 2.66
7100 7861 2.875933 ACCAAACACATCACAAGGTACG 59.124 45.455 0.00 0.00 0.00 3.67
7477 8239 1.276421 AGACAGATCAAACGACCAGGG 59.724 52.381 0.00 0.00 0.00 4.45
7494 8256 4.489306 AGAAGGCCTTGTATGGTTAGAC 57.511 45.455 26.25 3.19 0.00 2.59
7619 8381 5.865552 ACAAAGCTCAAATCCATGATTTTCG 59.134 36.000 0.00 0.00 39.82 3.46
7708 8470 7.951245 TGGTATGGGGAGTTAAACAAAATAACT 59.049 33.333 0.00 0.00 44.18 2.24
7709 8471 8.030692 GTGGTATGGGGAGTTAAACAAAATAAC 58.969 37.037 0.00 0.00 34.24 1.89
7711 8473 7.471890 AGTGGTATGGGGAGTTAAACAAAATA 58.528 34.615 0.00 0.00 0.00 1.40
7712 8474 6.319715 AGTGGTATGGGGAGTTAAACAAAAT 58.680 36.000 0.00 0.00 0.00 1.82
7715 8477 5.327737 AAGTGGTATGGGGAGTTAAACAA 57.672 39.130 0.00 0.00 0.00 2.83
7728 8491 6.915300 TCAACGAAAATTGACAAAGTGGTATG 59.085 34.615 0.00 0.00 33.62 2.39
7749 8512 9.760660 CTACTGTGCTTCAATTTATAACTCAAC 57.239 33.333 0.00 0.00 0.00 3.18
7794 8557 0.446222 CCGTAGTGCGACATTTTGGG 59.554 55.000 0.81 0.00 44.77 4.12
7795 8558 0.446222 CCCGTAGTGCGACATTTTGG 59.554 55.000 0.81 0.00 44.77 3.28
7796 8559 0.179200 GCCCGTAGTGCGACATTTTG 60.179 55.000 0.81 0.00 44.77 2.44
7797 8560 1.303091 GGCCCGTAGTGCGACATTTT 61.303 55.000 0.81 0.00 44.77 1.82
7798 8561 1.743995 GGCCCGTAGTGCGACATTT 60.744 57.895 0.81 0.00 44.77 2.32
7799 8562 2.125269 GGCCCGTAGTGCGACATT 60.125 61.111 0.81 0.00 44.77 2.71
7800 8563 4.157120 GGGCCCGTAGTGCGACAT 62.157 66.667 5.69 0.00 44.77 3.06
7802 8565 3.887335 TTTGGGCCCGTAGTGCGAC 62.887 63.158 19.37 0.00 44.77 5.19
7803 8566 2.472414 ATTTTGGGCCCGTAGTGCGA 62.472 55.000 19.37 0.00 44.77 5.10
7804 8567 2.043980 ATTTTGGGCCCGTAGTGCG 61.044 57.895 19.37 0.00 40.95 5.34
7805 8568 1.248101 ACATTTTGGGCCCGTAGTGC 61.248 55.000 19.37 0.00 0.00 4.40
7806 8569 0.808755 GACATTTTGGGCCCGTAGTG 59.191 55.000 19.37 16.43 0.00 2.74
7807 8570 0.675522 CGACATTTTGGGCCCGTAGT 60.676 55.000 19.37 11.22 0.00 2.73
7808 8571 1.988834 GCGACATTTTGGGCCCGTAG 61.989 60.000 19.37 9.92 0.00 3.51
7809 8572 2.041686 GCGACATTTTGGGCCCGTA 61.042 57.895 19.37 4.44 0.00 4.02
7810 8573 3.370231 GCGACATTTTGGGCCCGT 61.370 61.111 19.37 8.38 0.00 5.28
7811 8574 3.369400 TGCGACATTTTGGGCCCG 61.369 61.111 19.37 4.36 0.00 6.13
7812 8575 0.963355 TAGTGCGACATTTTGGGCCC 60.963 55.000 17.59 17.59 0.00 5.80
7813 8576 0.170339 GTAGTGCGACATTTTGGGCC 59.830 55.000 0.00 0.00 0.00 5.80
7814 8577 0.179200 CGTAGTGCGACATTTTGGGC 60.179 55.000 0.00 0.00 44.77 5.36
7815 8578 0.446222 CCGTAGTGCGACATTTTGGG 59.554 55.000 0.81 0.00 44.77 4.12
7882 8645 2.045045 GGGCAGGCATGTGTAGCA 60.045 61.111 0.00 0.00 0.00 3.49
7884 8647 0.254178 AGAAGGGCAGGCATGTGTAG 59.746 55.000 0.00 0.00 0.00 2.74
7903 8666 1.983481 AAATTCCAGCCATGCGCCA 60.983 52.632 4.18 0.00 38.78 5.69
7904 8667 1.519898 CAAATTCCAGCCATGCGCC 60.520 57.895 4.18 0.00 38.78 6.53
7925 8688 7.823799 AGACCAACAATTAATGGCCTAAAATTG 59.176 33.333 23.83 23.83 42.37 2.32
8042 8814 6.172630 TGTGAGAGCAATATAACTGCAAAGA 58.827 36.000 11.52 0.00 42.48 2.52
8043 8815 6.426980 TGTGAGAGCAATATAACTGCAAAG 57.573 37.500 11.52 0.00 42.48 2.77
8158 8933 8.008279 CGAGTTAATGATACAGCAATGATGAAG 58.992 37.037 5.17 0.00 0.00 3.02
8262 9037 6.105333 AGTGAAGCAGAAGTCATAGATGTTC 58.895 40.000 0.00 0.00 0.00 3.18
8396 9171 2.416547 CGAGCAAGTTCGAATGATGGTT 59.583 45.455 0.00 0.00 43.03 3.67
8397 9172 2.002586 CGAGCAAGTTCGAATGATGGT 58.997 47.619 0.00 6.66 43.03 3.55
8407 9226 0.884704 TTCCACTGGCGAGCAAGTTC 60.885 55.000 1.73 0.00 0.00 3.01
8521 9340 2.031069 CAGTCATCTATACCACGGACCG 60.031 54.545 13.61 13.61 0.00 4.79
8565 9384 3.082548 CCTCGAGACCTAGTTTCAGTCA 58.917 50.000 15.71 0.00 32.82 3.41
8574 9393 3.127895 CAGTTTCTGTCCTCGAGACCTAG 59.872 52.174 15.71 6.80 45.68 3.02
8582 9401 2.479730 CCCGATACAGTTTCTGTCCTCG 60.480 54.545 18.79 18.79 41.21 4.63
8614 9433 6.746822 CGAATGCACATTTTTATACAGAAGCA 59.253 34.615 0.00 0.00 0.00 3.91
8658 9477 3.418995 ACAGAGAGTAAACTGGACGCTA 58.581 45.455 0.00 0.00 38.30 4.26
8664 9483 6.944234 AAAGGAAAACAGAGAGTAAACTGG 57.056 37.500 0.00 0.00 38.30 4.00
8683 9504 5.920840 GCTTAACTGAACTTAGCCAAAAAGG 59.079 40.000 0.00 0.00 41.84 3.11
8716 9537 3.947910 AACGGAGGAAATACACGAGAA 57.052 42.857 0.00 0.00 0.00 2.87
8726 9672 5.967088 TCAAACAATTTGAAACGGAGGAAA 58.033 33.333 2.79 0.00 45.94 3.13
8764 9710 7.011482 GTCAAACTTAAAGATGTGTGACTCAGT 59.989 37.037 8.63 0.00 44.01 3.41
8806 9754 6.183360 GGTTCCAAAATGTTTGAAGTCCCTAA 60.183 38.462 2.30 0.00 0.00 2.69
8809 9757 4.141824 TGGTTCCAAAATGTTTGAAGTCCC 60.142 41.667 2.30 0.00 0.00 4.46
8850 9873 7.044181 TCAAATGAGGTCACAAGATATCTGAC 58.956 38.462 5.86 10.21 34.68 3.51
8917 9949 1.429463 CTTACGAGGCCTTGTCACAC 58.571 55.000 29.57 1.49 0.00 3.82
9020 10702 1.523758 CAGCCAACAACTACCACTCC 58.476 55.000 0.00 0.00 0.00 3.85
9093 10775 6.396829 AAGAAAGAGGAAATGACCAAACAG 57.603 37.500 0.00 0.00 0.00 3.16
9106 10788 4.223923 GGAGTCATCAAGGAAGAAAGAGGA 59.776 45.833 0.00 0.00 0.00 3.71
9107 10789 4.512484 GGAGTCATCAAGGAAGAAAGAGG 58.488 47.826 0.00 0.00 0.00 3.69
9108 10790 4.180057 CGGAGTCATCAAGGAAGAAAGAG 58.820 47.826 0.00 0.00 0.00 2.85
9109 10791 3.578716 ACGGAGTCATCAAGGAAGAAAGA 59.421 43.478 0.00 0.00 29.74 2.52
9110 10792 3.931578 ACGGAGTCATCAAGGAAGAAAG 58.068 45.455 0.00 0.00 29.74 2.62
9154 10836 5.570320 ACCAACTGGAGTAGCACATTAATT 58.430 37.500 1.86 0.00 38.94 1.40
9206 10888 4.290711 TGACAGAATGACACATCATGGT 57.709 40.909 0.00 0.00 45.26 3.55
9207 10889 6.053650 ACTATGACAGAATGACACATCATGG 58.946 40.000 0.00 0.00 44.67 3.66
9230 10912 7.224167 GGAATGTGCTGTACCACTAATACTTAC 59.776 40.741 4.26 0.00 36.68 2.34
9231 10913 7.125204 AGGAATGTGCTGTACCACTAATACTTA 59.875 37.037 4.26 0.00 36.68 2.24
9232 10914 6.070194 AGGAATGTGCTGTACCACTAATACTT 60.070 38.462 4.26 0.00 36.68 2.24
9233 10915 5.425539 AGGAATGTGCTGTACCACTAATACT 59.574 40.000 4.26 0.00 36.68 2.12
9234 10916 5.523916 CAGGAATGTGCTGTACCACTAATAC 59.476 44.000 4.26 0.00 36.68 1.89
9235 10917 5.396324 CCAGGAATGTGCTGTACCACTAATA 60.396 44.000 4.26 0.00 33.66 0.98
9236 10918 4.517285 CAGGAATGTGCTGTACCACTAAT 58.483 43.478 4.26 0.00 36.68 1.73
9237 10919 3.307410 CCAGGAATGTGCTGTACCACTAA 60.307 47.826 4.26 0.00 33.66 2.24
9238 10920 2.236146 CCAGGAATGTGCTGTACCACTA 59.764 50.000 4.26 0.00 33.66 2.74
9239 10921 1.003580 CCAGGAATGTGCTGTACCACT 59.996 52.381 4.26 0.00 33.66 4.00
9240 10922 1.453155 CCAGGAATGTGCTGTACCAC 58.547 55.000 0.00 0.00 33.66 4.16
9241 10923 0.322456 GCCAGGAATGTGCTGTACCA 60.322 55.000 0.00 0.00 33.66 3.25
9242 10924 0.035056 AGCCAGGAATGTGCTGTACC 60.035 55.000 0.00 0.00 33.66 3.34
9243 10925 1.089920 CAGCCAGGAATGTGCTGTAC 58.910 55.000 2.69 0.00 45.69 2.90
9244 10926 3.556817 CAGCCAGGAATGTGCTGTA 57.443 52.632 2.69 0.00 45.69 2.74
9245 10927 4.410225 CAGCCAGGAATGTGCTGT 57.590 55.556 2.69 0.00 45.69 4.40
9256 10938 2.289882 TGACAGATCAAACCTCAGCCAG 60.290 50.000 0.00 0.00 0.00 4.85
9257 10939 1.699083 TGACAGATCAAACCTCAGCCA 59.301 47.619 0.00 0.00 0.00 4.75
9258 10940 2.354259 CTGACAGATCAAACCTCAGCC 58.646 52.381 0.00 0.00 33.30 4.85
9259 10941 2.354259 CCTGACAGATCAAACCTCAGC 58.646 52.381 3.32 0.00 33.30 4.26
9260 10942 2.354259 GCCTGACAGATCAAACCTCAG 58.646 52.381 3.32 0.00 33.30 3.35
9261 10943 1.003580 GGCCTGACAGATCAAACCTCA 59.996 52.381 3.32 0.00 33.30 3.86
9307 10989 3.424703 CTCATTCCTTTTCCCTTGCTCA 58.575 45.455 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.