Multiple sequence alignment - TraesCS6D01G234700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G234700 chr6D 100.000 3249 0 0 1 3249 329083320 329080072 0.000000e+00 6000.0
1 TraesCS6D01G234700 chr6D 91.589 214 15 3 3038 3249 470407791 470408003 3.170000e-75 292.0
2 TraesCS6D01G234700 chr6D 90.551 127 10 2 2463 2588 161556386 161556511 2.010000e-37 167.0
3 TraesCS6D01G234700 chr6D 86.992 123 15 1 2463 2585 437430571 437430692 1.570000e-28 137.0
4 TraesCS6D01G234700 chr6D 90.164 61 6 0 2463 2523 376425125 376425185 2.690000e-11 80.5
5 TraesCS6D01G234700 chr6B 94.809 1907 78 9 483 2383 493354589 493352698 0.000000e+00 2953.0
6 TraesCS6D01G234700 chr6B 94.433 503 21 3 1 498 493355105 493354605 0.000000e+00 767.0
7 TraesCS6D01G234700 chr6B 90.196 357 24 5 2602 2957 493347814 493347468 3.820000e-124 455.0
8 TraesCS6D01G234700 chr6A 92.261 1977 69 23 442 2373 468475581 468473644 0.000000e+00 2726.0
9 TraesCS6D01G234700 chr6A 91.285 459 18 4 1 459 468476040 468475604 9.970000e-170 606.0
10 TraesCS6D01G234700 chr6A 92.744 317 19 2 2709 3024 468470351 468470038 3.820000e-124 455.0
11 TraesCS6D01G234700 chr4D 99.057 212 1 1 3038 3249 433628423 433628633 2.370000e-101 379.0
12 TraesCS6D01G234700 chr4D 83.871 124 17 3 2463 2586 365708137 365708017 7.370000e-22 115.0
13 TraesCS6D01G234700 chr7D 93.396 212 12 2 3038 3248 587178391 587178601 2.430000e-81 313.0
14 TraesCS6D01G234700 chr7D 92.019 213 16 1 3038 3249 28803490 28803278 6.810000e-77 298.0
15 TraesCS6D01G234700 chr5A 92.958 213 13 2 3038 3249 610090022 610089811 3.150000e-80 309.0
16 TraesCS6D01G234700 chr5A 92.105 152 10 2 2437 2587 470150120 470150270 2.540000e-51 213.0
17 TraesCS6D01G234700 chr1A 91.705 217 17 1 3034 3249 372242581 372242797 1.890000e-77 300.0
18 TraesCS6D01G234700 chr4A 91.284 218 17 2 3034 3249 234137824 234137607 2.450000e-76 296.0
19 TraesCS6D01G234700 chr2B 90.498 221 17 4 3032 3249 666546872 666546653 4.100000e-74 289.0
20 TraesCS6D01G234700 chr3A 89.333 225 23 1 3026 3249 644721237 644721461 6.860000e-72 281.0
21 TraesCS6D01G234700 chr4B 92.157 153 10 2 2437 2588 429242068 429241917 7.060000e-52 215.0
22 TraesCS6D01G234700 chr5D 90.850 153 12 2 2437 2588 262821727 262821576 1.530000e-48 204.0
23 TraesCS6D01G234700 chr5D 90.196 153 13 2 2437 2588 35164289 35164440 7.110000e-47 198.0
24 TraesCS6D01G234700 chr5D 90.196 153 13 2 2437 2588 235245893 235246044 7.110000e-47 198.0
25 TraesCS6D01G234700 chr5D 89.109 101 8 2 2489 2588 558898109 558898011 4.400000e-24 122.0
26 TraesCS6D01G234700 chr5D 97.727 44 1 0 2393 2436 416588152 416588109 3.480000e-10 76.8
27 TraesCS6D01G234700 chrUn 90.260 154 12 3 2437 2588 321005273 321005425 7.110000e-47 198.0
28 TraesCS6D01G234700 chrUn 90.260 154 12 3 2437 2588 450105864 450106016 7.110000e-47 198.0
29 TraesCS6D01G234700 chrUn 83.465 127 18 2 2463 2588 67432795 67432919 7.370000e-22 115.0
30 TraesCS6D01G234700 chr7A 89.308 159 15 2 2437 2594 5678379 5678222 7.110000e-47 198.0
31 TraesCS6D01G234700 chr1D 90.196 153 13 2 2437 2588 425953319 425953470 7.110000e-47 198.0
32 TraesCS6D01G234700 chr1D 100.000 35 0 0 2402 2436 26971213 26971179 7.520000e-07 65.8
33 TraesCS6D01G234700 chr2D 86.179 123 11 3 2463 2585 405406201 405406317 9.460000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G234700 chr6D 329080072 329083320 3248 True 6000.000000 6000 100.000000 1 3249 1 chr6D.!!$R1 3248
1 TraesCS6D01G234700 chr6B 493352698 493355105 2407 True 1860.000000 2953 94.621000 1 2383 2 chr6B.!!$R2 2382
2 TraesCS6D01G234700 chr6A 468470038 468476040 6002 True 1262.333333 2726 92.096667 1 3024 3 chr6A.!!$R1 3023

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 329 0.738762 TAGACACCTCTCGTCGTCCG 60.739 60.0 0.00 0.0 38.46 4.79 F
1372 1460 0.037232 GCTCCAGCTCGGTAAGTGTT 60.037 55.0 2.68 0.0 38.21 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1538 1634 1.172175 CCTGGAGCTTTTCCTTGAGC 58.828 55.0 0.0 0.0 46.92 4.26 R
2399 2525 0.410663 TTGGGAACGGAGGGAGTAGA 59.589 55.0 0.0 0.0 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
190 191 1.903877 AATCTGTCTGCTCACCCCGG 61.904 60.000 0.00 0.00 0.00 5.73
309 315 2.093106 GTCGGGCTCTCTTTCTAGACA 58.907 52.381 0.00 0.00 0.00 3.41
323 329 0.738762 TAGACACCTCTCGTCGTCCG 60.739 60.000 0.00 0.00 38.46 4.79
493 569 0.750182 ATAAACCCCGGCCAATCGTG 60.750 55.000 2.24 0.00 0.00 4.35
534 611 2.487762 GCCACTGTTCCAAAATCGATCA 59.512 45.455 0.00 0.00 0.00 2.92
583 663 3.371965 TCCTAAAGTATTGCCGGAGAGT 58.628 45.455 5.05 0.00 0.00 3.24
626 707 3.407967 GGCACCGGATGGGAGGAA 61.408 66.667 9.46 0.00 40.75 3.36
643 724 2.837371 GAAACGCCACGGAGAGAGGG 62.837 65.000 0.00 0.00 0.00 4.30
948 1032 4.207281 CAGCGGCTCCCGATCGAA 62.207 66.667 18.66 3.09 44.45 3.71
1210 1295 1.194781 TCCTCGGCAAGAAGAAGGCT 61.195 55.000 0.00 0.00 0.00 4.58
1371 1459 1.592223 GCTCCAGCTCGGTAAGTGT 59.408 57.895 2.68 0.00 38.21 3.55
1372 1460 0.037232 GCTCCAGCTCGGTAAGTGTT 60.037 55.000 2.68 0.00 38.21 3.32
1373 1461 1.608283 GCTCCAGCTCGGTAAGTGTTT 60.608 52.381 2.68 0.00 38.21 2.83
1382 1470 5.581085 AGCTCGGTAAGTGTTTACATGATTC 59.419 40.000 0.00 0.00 40.77 2.52
1450 1546 0.172578 TGCGATTACTGACCTCGTGG 59.827 55.000 0.99 0.99 39.83 4.94
1538 1634 3.584848 TCAAGAGGAAGAAGAAGAAGGGG 59.415 47.826 0.00 0.00 0.00 4.79
1547 1643 1.747444 AGAAGAAGGGGCTCAAGGAA 58.253 50.000 0.00 0.00 0.00 3.36
1646 1742 4.314440 TCTGTGCAGACCCACGGC 62.314 66.667 0.00 0.00 40.95 5.68
2183 2303 1.625818 AGTCAGGTCCTGGATGTTGTC 59.374 52.381 19.11 0.00 31.51 3.18
2309 2435 8.561932 AGATATATAGCGTATATTGTTGCGTG 57.438 34.615 6.25 0.00 33.60 5.34
2313 2439 6.831727 ATAGCGTATATTGTTGCGTGTTTA 57.168 33.333 0.00 0.00 0.00 2.01
2317 2443 7.024768 AGCGTATATTGTTGCGTGTTTATTTT 58.975 30.769 0.00 0.00 0.00 1.82
2318 2444 7.007905 AGCGTATATTGTTGCGTGTTTATTTTG 59.992 33.333 0.00 0.00 0.00 2.44
2319 2445 7.596576 CGTATATTGTTGCGTGTTTATTTTGG 58.403 34.615 0.00 0.00 0.00 3.28
2320 2446 4.723879 ATTGTTGCGTGTTTATTTTGGC 57.276 36.364 0.00 0.00 0.00 4.52
2322 2448 1.453900 GTTGCGTGTTTATTTTGGCGG 59.546 47.619 0.00 0.00 0.00 6.13
2323 2449 0.669077 TGCGTGTTTATTTTGGCGGT 59.331 45.000 0.00 0.00 0.00 5.68
2324 2450 1.056869 GCGTGTTTATTTTGGCGGTG 58.943 50.000 0.00 0.00 0.00 4.94
2325 2451 1.692296 CGTGTTTATTTTGGCGGTGG 58.308 50.000 0.00 0.00 0.00 4.61
2337 2463 2.226330 TGGCGGTGGATATATTGTTGC 58.774 47.619 0.00 0.00 0.00 4.17
2341 2467 3.242936 GCGGTGGATATATTGTTGCGTTT 60.243 43.478 0.00 0.00 0.00 3.60
2349 2475 6.409761 GGATATATTGTTGCGTTTTACGTGTG 59.590 38.462 0.00 0.00 44.73 3.82
2358 2484 3.787105 GCGTTTTACGTGTGAATTGTTGT 59.213 39.130 0.00 0.00 44.73 3.32
2360 2486 5.451662 GCGTTTTACGTGTGAATTGTTGTTA 59.548 36.000 0.00 0.00 44.73 2.41
2365 2491 8.603983 TTTACGTGTGAATTGTTGTTAGAAAC 57.396 30.769 0.00 0.00 0.00 2.78
2375 2501 5.242069 TGTTGTTAGAAACATGGTGTGTG 57.758 39.130 0.00 0.00 41.14 3.82
2377 2503 4.891627 TGTTAGAAACATGGTGTGTGTG 57.108 40.909 0.00 0.00 41.14 3.82
2384 2510 3.244033 ACATGGTGTGTGTGTTTTTGG 57.756 42.857 0.00 0.00 40.28 3.28
2386 2512 0.109086 TGGTGTGTGTGTTTTTGGCG 60.109 50.000 0.00 0.00 0.00 5.69
2387 2513 0.171455 GGTGTGTGTGTTTTTGGCGA 59.829 50.000 0.00 0.00 0.00 5.54
2388 2514 1.544686 GTGTGTGTGTTTTTGGCGAG 58.455 50.000 0.00 0.00 0.00 5.03
2389 2515 1.131504 GTGTGTGTGTTTTTGGCGAGA 59.868 47.619 0.00 0.00 0.00 4.04
2390 2516 1.813178 TGTGTGTGTTTTTGGCGAGAA 59.187 42.857 0.00 0.00 0.00 2.87
2396 2522 5.517054 TGTGTGTTTTTGGCGAGAAATTTAC 59.483 36.000 0.00 0.00 0.00 2.01
2397 2523 5.517054 GTGTGTTTTTGGCGAGAAATTTACA 59.483 36.000 0.00 0.00 0.00 2.41
2399 2525 6.758886 TGTGTTTTTGGCGAGAAATTTACAAT 59.241 30.769 0.00 0.00 0.00 2.71
2400 2526 7.043059 TGTGTTTTTGGCGAGAAATTTACAATC 60.043 33.333 0.00 0.00 0.00 2.67
2402 2528 8.353684 TGTTTTTGGCGAGAAATTTACAATCTA 58.646 29.630 0.00 0.00 0.00 1.98
2403 2529 8.635983 GTTTTTGGCGAGAAATTTACAATCTAC 58.364 33.333 0.00 0.00 0.00 2.59
2404 2530 7.681939 TTTGGCGAGAAATTTACAATCTACT 57.318 32.000 0.00 0.00 0.00 2.57
2405 2531 6.903883 TGGCGAGAAATTTACAATCTACTC 57.096 37.500 0.00 0.00 0.00 2.59
2406 2532 5.815740 TGGCGAGAAATTTACAATCTACTCC 59.184 40.000 0.00 0.00 0.00 3.85
2407 2533 5.236695 GGCGAGAAATTTACAATCTACTCCC 59.763 44.000 0.00 0.00 0.00 4.30
2409 2535 6.201234 GCGAGAAATTTACAATCTACTCCCTC 59.799 42.308 0.00 0.00 0.00 4.30
2410 2536 6.702282 CGAGAAATTTACAATCTACTCCCTCC 59.298 42.308 0.00 0.00 0.00 4.30
2411 2537 6.583562 AGAAATTTACAATCTACTCCCTCCG 58.416 40.000 0.00 0.00 0.00 4.63
2413 2539 5.952347 ATTTACAATCTACTCCCTCCGTT 57.048 39.130 0.00 0.00 0.00 4.44
2414 2540 4.996788 TTACAATCTACTCCCTCCGTTC 57.003 45.455 0.00 0.00 0.00 3.95
2415 2541 2.108970 ACAATCTACTCCCTCCGTTCC 58.891 52.381 0.00 0.00 0.00 3.62
2416 2542 1.413077 CAATCTACTCCCTCCGTTCCC 59.587 57.143 0.00 0.00 0.00 3.97
2417 2543 0.635009 ATCTACTCCCTCCGTTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
2418 2544 0.410663 TCTACTCCCTCCGTTCCCAA 59.589 55.000 0.00 0.00 0.00 4.12
2420 2546 1.838077 CTACTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
2422 2548 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
2423 2549 3.660959 ACTCCCTCCGTTCCCAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
2424 2550 4.240323 ACTCCCTCCGTTCCCAAATATAT 58.760 43.478 0.00 0.00 0.00 0.86
2425 2551 4.041691 ACTCCCTCCGTTCCCAAATATATG 59.958 45.833 0.00 0.00 0.00 1.78
2428 2554 4.041691 CCCTCCGTTCCCAAATATATGTCT 59.958 45.833 0.00 0.00 0.00 3.41
2429 2555 5.456186 CCCTCCGTTCCCAAATATATGTCTT 60.456 44.000 0.00 0.00 0.00 3.01
2430 2556 6.062095 CCTCCGTTCCCAAATATATGTCTTT 58.938 40.000 0.00 0.00 0.00 2.52
2431 2557 6.204882 CCTCCGTTCCCAAATATATGTCTTTC 59.795 42.308 0.00 0.00 0.00 2.62
2432 2558 6.895782 TCCGTTCCCAAATATATGTCTTTCT 58.104 36.000 0.00 0.00 0.00 2.52
2433 2559 8.025270 TCCGTTCCCAAATATATGTCTTTCTA 57.975 34.615 0.00 0.00 0.00 2.10
2434 2560 8.148351 TCCGTTCCCAAATATATGTCTTTCTAG 58.852 37.037 0.00 0.00 0.00 2.43
2435 2561 8.148351 CCGTTCCCAAATATATGTCTTTCTAGA 58.852 37.037 0.00 0.00 0.00 2.43
2436 2562 9.542462 CGTTCCCAAATATATGTCTTTCTAGAA 57.458 33.333 0.00 0.00 30.65 2.10
2477 3675 9.326413 AGAAATTTTATCAAGGGACTACATACG 57.674 33.333 0.00 0.00 38.49 3.06
2486 3684 9.847224 ATCAAGGGACTACATACGAAATAAAAT 57.153 29.630 0.00 0.00 38.49 1.82
2513 3711 8.764524 AGTGAATCTACACTCTAAAACATGTC 57.235 34.615 0.00 0.00 46.36 3.06
2514 3712 8.589338 AGTGAATCTACACTCTAAAACATGTCT 58.411 33.333 0.00 0.00 46.36 3.41
2532 3730 9.639601 AACATGTCTATATACATCCGTATGTTG 57.360 33.333 0.00 0.00 44.07 3.33
2533 3731 8.803235 ACATGTCTATATACATCCGTATGTTGT 58.197 33.333 0.00 0.00 44.07 3.32
2536 3734 9.511272 TGTCTATATACATCCGTATGTTGTAGT 57.489 33.333 0.00 0.00 44.07 2.73
2538 3736 9.170734 TCTATATACATCCGTATGTTGTAGTCC 57.829 37.037 0.00 0.00 44.07 3.85
2539 3737 7.770366 ATATACATCCGTATGTTGTAGTCCA 57.230 36.000 0.00 0.00 44.07 4.02
2540 3738 6.665992 ATACATCCGTATGTTGTAGTCCAT 57.334 37.500 0.00 0.00 44.07 3.41
2541 3739 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
2542 3740 5.741011 ACATCCGTATGTTGTAGTCCATTT 58.259 37.500 0.00 0.00 44.07 2.32
2543 3741 5.584649 ACATCCGTATGTTGTAGTCCATTTG 59.415 40.000 0.00 0.00 44.07 2.32
2544 3742 5.408880 TCCGTATGTTGTAGTCCATTTGA 57.591 39.130 0.00 0.00 0.00 2.69
2547 3745 6.148150 TCCGTATGTTGTAGTCCATTTGAAAC 59.852 38.462 0.00 0.00 0.00 2.78
2548 3746 6.311723 CGTATGTTGTAGTCCATTTGAAACC 58.688 40.000 0.00 0.00 0.00 3.27
2550 3748 6.575162 ATGTTGTAGTCCATTTGAAACCTC 57.425 37.500 0.00 0.00 0.00 3.85
2551 3749 5.690865 TGTTGTAGTCCATTTGAAACCTCT 58.309 37.500 0.00 0.00 0.00 3.69
2552 3750 6.833041 TGTTGTAGTCCATTTGAAACCTCTA 58.167 36.000 0.00 0.00 0.00 2.43
2554 3752 7.776030 TGTTGTAGTCCATTTGAAACCTCTAAA 59.224 33.333 0.00 0.00 0.00 1.85
2580 3778 8.904099 AAAGACTTATATTTAGGAACGGATGG 57.096 34.615 0.00 0.00 0.00 3.51
2584 3782 8.716674 ACTTATATTTAGGAACGGATGGAGTA 57.283 34.615 0.00 0.00 0.00 2.59
2589 3787 7.792364 ATTTAGGAACGGATGGAGTATATCA 57.208 36.000 0.00 0.00 0.00 2.15
2591 3789 7.792364 TTAGGAACGGATGGAGTATATCAAT 57.208 36.000 0.00 0.00 0.00 2.57
2594 3792 6.270000 AGGAACGGATGGAGTATATCAATGAA 59.730 38.462 0.00 0.00 0.00 2.57
2595 3793 7.038017 AGGAACGGATGGAGTATATCAATGAAT 60.038 37.037 0.00 0.00 0.00 2.57
2597 3795 5.877012 ACGGATGGAGTATATCAATGAATGC 59.123 40.000 0.00 0.00 0.00 3.56
2599 3797 6.036844 CGGATGGAGTATATCAATGAATGCAG 59.963 42.308 0.00 0.00 0.00 4.41
2608 5766 9.579768 GTATATCAATGAATGCAGTACTAGAGG 57.420 37.037 0.00 0.00 0.00 3.69
2616 5774 7.847096 TGAATGCAGTACTAGAGGTGATAAAA 58.153 34.615 0.00 0.00 0.00 1.52
2617 5775 8.318412 TGAATGCAGTACTAGAGGTGATAAAAA 58.682 33.333 0.00 0.00 0.00 1.94
2632 5790 8.141268 AGGTGATAAAAATTACAACAAGTGTGG 58.859 33.333 0.00 0.00 41.89 4.17
2643 5801 6.665992 ACAACAAGTGTGGAGAAGATAGTA 57.334 37.500 0.00 0.00 39.72 1.82
2644 5802 6.456501 ACAACAAGTGTGGAGAAGATAGTAC 58.543 40.000 0.00 0.00 39.72 2.73
2645 5803 6.267928 ACAACAAGTGTGGAGAAGATAGTACT 59.732 38.462 0.00 0.00 39.72 2.73
2646 5804 6.274157 ACAAGTGTGGAGAAGATAGTACTG 57.726 41.667 5.39 0.00 0.00 2.74
2647 5805 5.186021 ACAAGTGTGGAGAAGATAGTACTGG 59.814 44.000 5.39 0.00 0.00 4.00
2648 5806 4.282496 AGTGTGGAGAAGATAGTACTGGG 58.718 47.826 5.39 0.00 0.00 4.45
2649 5807 4.024670 GTGTGGAGAAGATAGTACTGGGT 58.975 47.826 5.39 0.00 0.00 4.51
2650 5808 4.466726 GTGTGGAGAAGATAGTACTGGGTT 59.533 45.833 5.39 0.00 0.00 4.11
2651 5809 5.046520 GTGTGGAGAAGATAGTACTGGGTTT 60.047 44.000 5.39 0.00 0.00 3.27
2652 5810 5.546499 TGTGGAGAAGATAGTACTGGGTTTT 59.454 40.000 5.39 0.00 0.00 2.43
2653 5811 5.875359 GTGGAGAAGATAGTACTGGGTTTTG 59.125 44.000 5.39 0.00 0.00 2.44
2654 5812 4.876679 GGAGAAGATAGTACTGGGTTTTGC 59.123 45.833 5.39 0.00 0.00 3.68
2655 5813 4.504858 AGAAGATAGTACTGGGTTTTGCG 58.495 43.478 5.39 0.00 0.00 4.85
2656 5814 3.261981 AGATAGTACTGGGTTTTGCGG 57.738 47.619 5.39 0.00 0.00 5.69
2657 5815 1.669265 GATAGTACTGGGTTTTGCGGC 59.331 52.381 5.39 0.00 0.00 6.53
2658 5816 0.688487 TAGTACTGGGTTTTGCGGCT 59.312 50.000 5.39 0.00 0.00 5.52
2659 5817 0.605589 AGTACTGGGTTTTGCGGCTC 60.606 55.000 0.00 0.00 0.00 4.70
2660 5818 0.887387 GTACTGGGTTTTGCGGCTCA 60.887 55.000 0.00 0.00 0.00 4.26
2661 5819 0.605319 TACTGGGTTTTGCGGCTCAG 60.605 55.000 0.00 2.55 0.00 3.35
2662 5820 1.600636 CTGGGTTTTGCGGCTCAGA 60.601 57.895 0.00 0.00 0.00 3.27
2663 5821 1.580845 CTGGGTTTTGCGGCTCAGAG 61.581 60.000 0.00 0.00 0.00 3.35
2664 5822 2.563427 GGTTTTGCGGCTCAGAGC 59.437 61.111 14.69 14.69 41.46 4.09
2665 5823 1.968540 GGTTTTGCGGCTCAGAGCT 60.969 57.895 21.99 0.00 41.99 4.09
2671 5829 2.263852 CGGCTCAGAGCTGCAGAA 59.736 61.111 20.43 0.00 41.20 3.02
2672 5830 1.375140 CGGCTCAGAGCTGCAGAAA 60.375 57.895 20.43 0.00 41.20 2.52
2673 5831 0.952497 CGGCTCAGAGCTGCAGAAAA 60.952 55.000 20.43 0.00 41.20 2.29
2674 5832 1.461559 GGCTCAGAGCTGCAGAAAAT 58.538 50.000 20.43 0.00 41.99 1.82
2675 5833 1.817447 GGCTCAGAGCTGCAGAAAATT 59.183 47.619 20.43 0.00 41.99 1.82
2676 5834 3.012518 GGCTCAGAGCTGCAGAAAATTA 58.987 45.455 20.43 0.00 41.99 1.40
2677 5835 3.631227 GGCTCAGAGCTGCAGAAAATTAT 59.369 43.478 20.43 0.00 41.99 1.28
2678 5836 4.818546 GGCTCAGAGCTGCAGAAAATTATA 59.181 41.667 20.43 0.00 41.99 0.98
2679 5837 5.297776 GGCTCAGAGCTGCAGAAAATTATAA 59.702 40.000 20.43 0.00 41.99 0.98
2680 5838 6.428799 GCTCAGAGCTGCAGAAAATTATAAG 58.571 40.000 20.43 3.39 38.45 1.73
2681 5839 6.038050 GCTCAGAGCTGCAGAAAATTATAAGT 59.962 38.462 20.43 0.00 38.45 2.24
2682 5840 7.414984 GCTCAGAGCTGCAGAAAATTATAAGTT 60.415 37.037 20.43 0.00 38.45 2.66
2683 5841 7.978982 TCAGAGCTGCAGAAAATTATAAGTTC 58.021 34.615 20.43 1.58 0.00 3.01
2684 5842 6.904011 CAGAGCTGCAGAAAATTATAAGTTCG 59.096 38.462 20.43 0.61 0.00 3.95
2685 5843 6.595716 AGAGCTGCAGAAAATTATAAGTTCGT 59.404 34.615 20.43 0.00 0.00 3.85
2686 5844 7.119846 AGAGCTGCAGAAAATTATAAGTTCGTT 59.880 33.333 20.43 0.00 0.00 3.85
2687 5845 7.244192 AGCTGCAGAAAATTATAAGTTCGTTC 58.756 34.615 20.43 0.00 0.00 3.95
2688 5846 6.192863 GCTGCAGAAAATTATAAGTTCGTTCG 59.807 38.462 20.43 0.00 0.00 3.95
2689 5847 7.124347 TGCAGAAAATTATAAGTTCGTTCGT 57.876 32.000 0.00 0.00 0.00 3.85
2690 5848 7.012943 TGCAGAAAATTATAAGTTCGTTCGTG 58.987 34.615 0.00 0.00 0.00 4.35
2691 5849 7.095565 TGCAGAAAATTATAAGTTCGTTCGTGA 60.096 33.333 0.00 0.00 0.00 4.35
2692 5850 7.422746 GCAGAAAATTATAAGTTCGTTCGTGAG 59.577 37.037 0.00 0.00 0.00 3.51
2693 5851 8.433126 CAGAAAATTATAAGTTCGTTCGTGAGT 58.567 33.333 0.00 0.00 0.00 3.41
2694 5852 8.985805 AGAAAATTATAAGTTCGTTCGTGAGTT 58.014 29.630 0.00 0.00 0.00 3.01
2695 5853 9.590088 GAAAATTATAAGTTCGTTCGTGAGTTT 57.410 29.630 0.00 0.00 0.00 2.66
2696 5854 9.940166 AAAATTATAAGTTCGTTCGTGAGTTTT 57.060 25.926 0.00 0.00 0.00 2.43
2697 5855 9.940166 AAATTATAAGTTCGTTCGTGAGTTTTT 57.060 25.926 0.00 0.00 0.00 1.94
2718 5876 5.545658 TTTGCTTGGCTAATAGACTTTCG 57.454 39.130 0.00 0.00 0.00 3.46
2732 5890 8.882415 AATAGACTTTCGACTTCAACAAACTA 57.118 30.769 0.00 0.00 0.00 2.24
2738 5896 8.336080 ACTTTCGACTTCAACAAACTAATCTTC 58.664 33.333 0.00 0.00 0.00 2.87
2756 5914 9.528018 CTAATCTTCCTTTTTGTTTTGCTTGTA 57.472 29.630 0.00 0.00 0.00 2.41
2765 5923 9.906660 CTTTTTGTTTTGCTTGTAGTATATGGA 57.093 29.630 0.00 0.00 0.00 3.41
2768 5926 9.685828 TTTGTTTTGCTTGTAGTATATGGAAAC 57.314 29.630 0.35 0.00 0.00 2.78
2792 5950 4.590850 AGTGTCCTCAATTTTCCTTTGC 57.409 40.909 0.00 0.00 0.00 3.68
2793 5951 3.321968 AGTGTCCTCAATTTTCCTTTGCC 59.678 43.478 0.00 0.00 0.00 4.52
2866 6024 2.877360 AAATCATGGCAGCTTGCGCG 62.877 55.000 0.00 0.00 46.21 6.86
2887 6045 6.511977 GCGCGTTCATTAAAGAAATAGTATCG 59.488 38.462 8.43 0.00 0.00 2.92
2889 6047 8.054236 CGCGTTCATTAAAGAAATAGTATCGTT 58.946 33.333 0.00 0.00 0.00 3.85
2975 6133 2.944129 AGTGGTTTGGCTTCTTTGCTA 58.056 42.857 0.00 0.00 0.00 3.49
3003 6161 7.836183 AGAAAATACTGACATGGGCTTCTATTT 59.164 33.333 0.00 0.00 0.00 1.40
3024 6182 3.571590 TGGGGTCAAAATATACATGGCC 58.428 45.455 0.00 0.00 38.12 5.36
3025 6183 3.206412 TGGGGTCAAAATATACATGGCCT 59.794 43.478 3.32 0.00 38.86 5.19
3026 6184 4.223144 GGGGTCAAAATATACATGGCCTT 58.777 43.478 3.32 0.00 38.86 4.35
3027 6185 4.653801 GGGGTCAAAATATACATGGCCTTT 59.346 41.667 3.32 0.00 38.86 3.11
3028 6186 5.130311 GGGGTCAAAATATACATGGCCTTTT 59.870 40.000 3.32 0.00 38.86 2.27
3029 6187 6.352651 GGGGTCAAAATATACATGGCCTTTTT 60.353 38.462 3.32 0.00 38.86 1.94
3030 6188 7.147637 GGGGTCAAAATATACATGGCCTTTTTA 60.148 37.037 3.32 0.00 38.86 1.52
3031 6189 8.428852 GGGTCAAAATATACATGGCCTTTTTAT 58.571 33.333 3.32 0.00 38.86 1.40
3032 6190 9.476202 GGTCAAAATATACATGGCCTTTTTATC 57.524 33.333 3.32 0.00 35.93 1.75
3042 6200 8.879427 ACATGGCCTTTTTATCTAAAACTAGT 57.121 30.769 3.32 0.00 35.14 2.57
3043 6201 9.969001 ACATGGCCTTTTTATCTAAAACTAGTA 57.031 29.630 3.32 0.00 35.14 1.82
3046 6204 8.953313 TGGCCTTTTTATCTAAAACTAGTAAGC 58.047 33.333 3.32 0.00 35.14 3.09
3047 6205 8.121086 GGCCTTTTTATCTAAAACTAGTAAGCG 58.879 37.037 0.00 0.00 35.14 4.68
3048 6206 8.663025 GCCTTTTTATCTAAAACTAGTAAGCGT 58.337 33.333 0.00 0.00 35.14 5.07
3049 6207 9.968743 CCTTTTTATCTAAAACTAGTAAGCGTG 57.031 33.333 0.00 0.00 35.14 5.34
3050 6208 9.474249 CTTTTTATCTAAAACTAGTAAGCGTGC 57.526 33.333 0.00 0.00 35.14 5.34
3051 6209 8.537049 TTTTATCTAAAACTAGTAAGCGTGCA 57.463 30.769 0.00 0.00 30.83 4.57
3052 6210 7.515957 TTATCTAAAACTAGTAAGCGTGCAC 57.484 36.000 6.82 6.82 0.00 4.57
3053 6211 3.916172 TCTAAAACTAGTAAGCGTGCACG 59.084 43.478 34.01 34.01 43.27 5.34
3054 6212 2.144482 AAACTAGTAAGCGTGCACGT 57.856 45.000 36.80 22.79 42.22 4.49
3055 6213 1.415374 AACTAGTAAGCGTGCACGTG 58.585 50.000 36.80 20.50 42.22 4.49
3056 6214 1.007336 ACTAGTAAGCGTGCACGTGC 61.007 55.000 36.80 33.11 42.22 5.34
3072 6230 3.816580 TGCAACGCACGTATCCTAA 57.183 47.368 0.00 0.00 31.71 2.69
3073 6231 2.303163 TGCAACGCACGTATCCTAAT 57.697 45.000 0.00 0.00 31.71 1.73
3074 6232 3.439895 TGCAACGCACGTATCCTAATA 57.560 42.857 0.00 0.00 31.71 0.98
3075 6233 3.783191 TGCAACGCACGTATCCTAATAA 58.217 40.909 0.00 0.00 31.71 1.40
3076 6234 4.182339 TGCAACGCACGTATCCTAATAAA 58.818 39.130 0.00 0.00 31.71 1.40
3077 6235 4.033129 TGCAACGCACGTATCCTAATAAAC 59.967 41.667 0.00 0.00 31.71 2.01
3078 6236 4.551410 GCAACGCACGTATCCTAATAAACC 60.551 45.833 0.00 0.00 0.00 3.27
3079 6237 4.389890 ACGCACGTATCCTAATAAACCA 57.610 40.909 0.00 0.00 0.00 3.67
3080 6238 4.114794 ACGCACGTATCCTAATAAACCAC 58.885 43.478 0.00 0.00 0.00 4.16
3081 6239 4.114073 CGCACGTATCCTAATAAACCACA 58.886 43.478 0.00 0.00 0.00 4.17
3082 6240 4.567558 CGCACGTATCCTAATAAACCACAA 59.432 41.667 0.00 0.00 0.00 3.33
3083 6241 5.235616 CGCACGTATCCTAATAAACCACAAT 59.764 40.000 0.00 0.00 0.00 2.71
3084 6242 6.421501 CGCACGTATCCTAATAAACCACAATA 59.578 38.462 0.00 0.00 0.00 1.90
3085 6243 7.042590 CGCACGTATCCTAATAAACCACAATAA 60.043 37.037 0.00 0.00 0.00 1.40
3086 6244 8.614346 GCACGTATCCTAATAAACCACAATAAA 58.386 33.333 0.00 0.00 0.00 1.40
3100 6258 8.785329 AACCACAATAAAAACATGAACTTTGT 57.215 26.923 0.00 0.00 0.00 2.83
3101 6259 8.419076 ACCACAATAAAAACATGAACTTTGTC 57.581 30.769 0.00 0.00 0.00 3.18
3102 6260 8.257306 ACCACAATAAAAACATGAACTTTGTCT 58.743 29.630 0.00 0.00 0.00 3.41
3103 6261 9.097257 CCACAATAAAAACATGAACTTTGTCTT 57.903 29.630 0.00 0.00 0.00 3.01
3104 6262 9.904647 CACAATAAAAACATGAACTTTGTCTTG 57.095 29.630 0.00 0.00 0.00 3.02
3105 6263 9.651913 ACAATAAAAACATGAACTTTGTCTTGT 57.348 25.926 0.00 0.00 37.47 3.16
3106 6264 9.904647 CAATAAAAACATGAACTTTGTCTTGTG 57.095 29.630 0.00 0.00 36.38 3.33
3107 6265 9.651913 AATAAAAACATGAACTTTGTCTTGTGT 57.348 25.926 0.00 0.00 36.38 3.72
3108 6266 7.961325 AAAAACATGAACTTTGTCTTGTGTT 57.039 28.000 0.00 0.00 35.63 3.32
3109 6267 7.961325 AAAACATGAACTTTGTCTTGTGTTT 57.039 28.000 0.00 0.00 39.42 2.83
3110 6268 7.961325 AAACATGAACTTTGTCTTGTGTTTT 57.039 28.000 0.00 0.00 35.68 2.43
3111 6269 7.961325 AACATGAACTTTGTCTTGTGTTTTT 57.039 28.000 0.00 0.00 36.38 1.94
3112 6270 9.482627 AAACATGAACTTTGTCTTGTGTTTTTA 57.517 25.926 0.00 0.00 35.68 1.52
3113 6271 8.460831 ACATGAACTTTGTCTTGTGTTTTTAC 57.539 30.769 0.00 0.00 35.30 2.01
3114 6272 7.544217 ACATGAACTTTGTCTTGTGTTTTTACC 59.456 33.333 0.00 0.00 35.30 2.85
3115 6273 6.982852 TGAACTTTGTCTTGTGTTTTTACCA 58.017 32.000 0.00 0.00 0.00 3.25
3116 6274 7.087639 TGAACTTTGTCTTGTGTTTTTACCAG 58.912 34.615 0.00 0.00 0.00 4.00
3117 6275 6.827586 ACTTTGTCTTGTGTTTTTACCAGA 57.172 33.333 0.00 0.00 0.00 3.86
3118 6276 7.222000 ACTTTGTCTTGTGTTTTTACCAGAA 57.778 32.000 0.00 0.00 0.00 3.02
3119 6277 7.088272 ACTTTGTCTTGTGTTTTTACCAGAAC 58.912 34.615 0.00 0.00 0.00 3.01
3120 6278 6.576662 TTGTCTTGTGTTTTTACCAGAACA 57.423 33.333 0.00 0.00 33.67 3.18
3121 6279 6.767524 TGTCTTGTGTTTTTACCAGAACAT 57.232 33.333 0.00 0.00 37.98 2.71
3122 6280 7.164230 TGTCTTGTGTTTTTACCAGAACATT 57.836 32.000 0.00 0.00 37.98 2.71
3123 6281 7.607250 TGTCTTGTGTTTTTACCAGAACATTT 58.393 30.769 0.00 0.00 37.98 2.32
3124 6282 8.740906 TGTCTTGTGTTTTTACCAGAACATTTA 58.259 29.630 0.00 0.00 37.98 1.40
3125 6283 9.575783 GTCTTGTGTTTTTACCAGAACATTTAA 57.424 29.630 0.00 0.00 37.98 1.52
3129 6287 8.821894 TGTGTTTTTACCAGAACATTTAAATGC 58.178 29.630 24.82 11.89 40.04 3.56
3130 6288 8.001549 GTGTTTTTACCAGAACATTTAAATGCG 58.998 33.333 24.82 12.60 40.04 4.73
3131 6289 7.707035 TGTTTTTACCAGAACATTTAAATGCGT 59.293 29.630 24.82 14.87 40.04 5.24
3132 6290 7.630470 TTTTACCAGAACATTTAAATGCGTG 57.370 32.000 24.82 18.71 40.04 5.34
3133 6291 4.846779 ACCAGAACATTTAAATGCGTGT 57.153 36.364 24.82 13.63 40.04 4.49
3134 6292 4.794169 ACCAGAACATTTAAATGCGTGTC 58.206 39.130 24.82 17.06 40.04 3.67
3135 6293 4.277174 ACCAGAACATTTAAATGCGTGTCA 59.723 37.500 24.82 0.00 40.04 3.58
3136 6294 4.616802 CCAGAACATTTAAATGCGTGTCAC 59.383 41.667 24.82 10.49 40.04 3.67
3137 6295 4.318071 CAGAACATTTAAATGCGTGTCACG 59.682 41.667 24.82 21.02 45.88 4.35
3148 6306 2.911819 CGTGTCACGCCCAATAATTT 57.088 45.000 13.22 0.00 33.65 1.82
3149 6307 2.514902 CGTGTCACGCCCAATAATTTG 58.485 47.619 13.22 0.00 33.65 2.32
3150 6308 2.160615 CGTGTCACGCCCAATAATTTGA 59.839 45.455 13.22 0.00 33.65 2.69
3151 6309 3.365465 CGTGTCACGCCCAATAATTTGAA 60.365 43.478 13.22 0.00 33.65 2.69
3152 6310 4.674101 CGTGTCACGCCCAATAATTTGAAT 60.674 41.667 13.22 0.00 33.65 2.57
3153 6311 4.562394 GTGTCACGCCCAATAATTTGAATG 59.438 41.667 0.00 0.00 34.60 2.67
3154 6312 3.551485 GTCACGCCCAATAATTTGAATGC 59.449 43.478 0.00 0.00 34.60 3.56
3155 6313 3.194329 TCACGCCCAATAATTTGAATGCA 59.806 39.130 0.00 0.00 34.60 3.96
3156 6314 3.931468 CACGCCCAATAATTTGAATGCAA 59.069 39.130 0.00 0.00 34.60 4.08
3157 6315 4.571580 CACGCCCAATAATTTGAATGCAAT 59.428 37.500 0.00 0.00 34.60 3.56
3158 6316 5.752472 CACGCCCAATAATTTGAATGCAATA 59.248 36.000 0.00 0.00 34.60 1.90
3159 6317 6.257411 CACGCCCAATAATTTGAATGCAATAA 59.743 34.615 0.00 0.00 34.60 1.40
3160 6318 6.991531 ACGCCCAATAATTTGAATGCAATAAT 59.008 30.769 0.00 0.00 34.60 1.28
3161 6319 7.498570 ACGCCCAATAATTTGAATGCAATAATT 59.501 29.630 0.00 0.00 34.60 1.40
3162 6320 8.344098 CGCCCAATAATTTGAATGCAATAATTT 58.656 29.630 0.00 0.00 34.60 1.82
3190 6348 9.975218 TTTTAGATTAAGCCATAGGTCTTCTTT 57.025 29.630 0.00 0.00 0.00 2.52
3191 6349 8.964476 TTAGATTAAGCCATAGGTCTTCTTTG 57.036 34.615 0.00 0.00 0.00 2.77
3192 6350 7.200434 AGATTAAGCCATAGGTCTTCTTTGA 57.800 36.000 0.00 0.00 0.00 2.69
3193 6351 7.051000 AGATTAAGCCATAGGTCTTCTTTGAC 58.949 38.462 0.00 0.00 36.31 3.18
3194 6352 4.917906 AAGCCATAGGTCTTCTTTGACT 57.082 40.909 0.00 0.00 37.16 3.41
3195 6353 4.213564 AGCCATAGGTCTTCTTTGACTG 57.786 45.455 0.00 0.00 37.16 3.51
3196 6354 3.054802 AGCCATAGGTCTTCTTTGACTGG 60.055 47.826 0.00 0.00 37.16 4.00
3197 6355 3.307762 GCCATAGGTCTTCTTTGACTGGT 60.308 47.826 0.00 0.00 34.36 4.00
3198 6356 4.256920 CCATAGGTCTTCTTTGACTGGTG 58.743 47.826 0.00 0.00 37.16 4.17
3199 6357 4.020218 CCATAGGTCTTCTTTGACTGGTGA 60.020 45.833 0.00 0.00 37.16 4.02
3200 6358 5.513094 CCATAGGTCTTCTTTGACTGGTGAA 60.513 44.000 0.00 0.00 37.16 3.18
3201 6359 4.503714 AGGTCTTCTTTGACTGGTGAAA 57.496 40.909 0.00 0.00 37.16 2.69
3202 6360 4.455606 AGGTCTTCTTTGACTGGTGAAAG 58.544 43.478 6.38 6.38 35.55 2.62
3203 6361 4.164221 AGGTCTTCTTTGACTGGTGAAAGA 59.836 41.667 10.39 10.39 40.18 2.52
3204 6362 4.273724 GGTCTTCTTTGACTGGTGAAAGAC 59.726 45.833 13.23 5.21 41.27 3.01
3205 6363 5.119694 GTCTTCTTTGACTGGTGAAAGACT 58.880 41.667 13.23 0.00 41.27 3.24
3206 6364 5.586643 GTCTTCTTTGACTGGTGAAAGACTT 59.413 40.000 13.23 0.00 41.27 3.01
3207 6365 5.817816 TCTTCTTTGACTGGTGAAAGACTTC 59.182 40.000 13.23 0.00 41.27 3.01
3208 6366 4.451900 TCTTTGACTGGTGAAAGACTTCC 58.548 43.478 10.39 0.00 37.77 3.46
3209 6367 3.924114 TTGACTGGTGAAAGACTTCCA 57.076 42.857 0.00 0.00 0.00 3.53
3210 6368 4.437682 TTGACTGGTGAAAGACTTCCAT 57.562 40.909 0.00 0.00 0.00 3.41
3211 6369 4.437682 TGACTGGTGAAAGACTTCCATT 57.562 40.909 0.00 0.00 0.00 3.16
3212 6370 4.136796 TGACTGGTGAAAGACTTCCATTG 58.863 43.478 0.00 0.00 0.00 2.82
3213 6371 4.137543 GACTGGTGAAAGACTTCCATTGT 58.862 43.478 0.00 0.00 0.00 2.71
3214 6372 4.536765 ACTGGTGAAAGACTTCCATTGTT 58.463 39.130 0.00 0.00 0.00 2.83
3215 6373 5.690865 ACTGGTGAAAGACTTCCATTGTTA 58.309 37.500 0.00 0.00 0.00 2.41
3216 6374 6.126409 ACTGGTGAAAGACTTCCATTGTTAA 58.874 36.000 0.00 0.00 0.00 2.01
3217 6375 6.605594 ACTGGTGAAAGACTTCCATTGTTAAA 59.394 34.615 0.00 0.00 0.00 1.52
3218 6376 7.287696 ACTGGTGAAAGACTTCCATTGTTAAAT 59.712 33.333 0.00 0.00 0.00 1.40
3219 6377 7.432869 TGGTGAAAGACTTCCATTGTTAAATG 58.567 34.615 0.00 0.00 42.49 2.32
3220 6378 7.069331 TGGTGAAAGACTTCCATTGTTAAATGT 59.931 33.333 0.00 0.00 41.46 2.71
3221 6379 7.926018 GGTGAAAGACTTCCATTGTTAAATGTT 59.074 33.333 0.00 0.00 41.46 2.71
3222 6380 8.755018 GTGAAAGACTTCCATTGTTAAATGTTG 58.245 33.333 0.00 0.00 41.46 3.33
3223 6381 8.474025 TGAAAGACTTCCATTGTTAAATGTTGT 58.526 29.630 0.00 0.00 41.46 3.32
3224 6382 8.647143 AAAGACTTCCATTGTTAAATGTTGTG 57.353 30.769 0.00 0.00 41.46 3.33
3225 6383 7.581213 AGACTTCCATTGTTAAATGTTGTGA 57.419 32.000 0.00 0.00 41.46 3.58
3226 6384 8.181904 AGACTTCCATTGTTAAATGTTGTGAT 57.818 30.769 0.00 0.00 41.46 3.06
3227 6385 8.299570 AGACTTCCATTGTTAAATGTTGTGATC 58.700 33.333 0.00 0.00 41.46 2.92
3228 6386 7.378181 ACTTCCATTGTTAAATGTTGTGATCC 58.622 34.615 0.00 0.00 41.46 3.36
3229 6387 6.279513 TCCATTGTTAAATGTTGTGATCCC 57.720 37.500 0.00 0.00 41.46 3.85
3230 6388 5.777223 TCCATTGTTAAATGTTGTGATCCCA 59.223 36.000 0.00 0.00 41.46 4.37
3231 6389 6.268617 TCCATTGTTAAATGTTGTGATCCCAA 59.731 34.615 0.00 0.00 41.46 4.12
3232 6390 6.591062 CCATTGTTAAATGTTGTGATCCCAAG 59.409 38.462 0.00 0.00 41.46 3.61
3233 6391 6.968263 TTGTTAAATGTTGTGATCCCAAGA 57.032 33.333 0.00 0.00 0.00 3.02
3234 6392 7.537596 TTGTTAAATGTTGTGATCCCAAGAT 57.462 32.000 0.00 0.00 34.57 2.40
3235 6393 7.537596 TGTTAAATGTTGTGATCCCAAGATT 57.462 32.000 7.36 7.36 39.26 2.40
3236 6394 7.601856 TGTTAAATGTTGTGATCCCAAGATTC 58.398 34.615 12.52 3.32 37.33 2.52
3237 6395 5.665916 AAATGTTGTGATCCCAAGATTCC 57.334 39.130 12.52 0.00 37.33 3.01
3238 6396 3.805066 TGTTGTGATCCCAAGATTCCA 57.195 42.857 0.00 0.00 30.90 3.53
3239 6397 4.111255 TGTTGTGATCCCAAGATTCCAA 57.889 40.909 0.00 0.00 30.90 3.53
3240 6398 4.478203 TGTTGTGATCCCAAGATTCCAAA 58.522 39.130 0.00 0.00 30.90 3.28
3241 6399 4.898265 TGTTGTGATCCCAAGATTCCAAAA 59.102 37.500 0.00 0.00 30.90 2.44
3242 6400 5.365025 TGTTGTGATCCCAAGATTCCAAAAA 59.635 36.000 0.00 0.00 30.90 1.94
3243 6401 5.467035 TGTGATCCCAAGATTCCAAAAAC 57.533 39.130 0.00 0.00 30.90 2.43
3244 6402 4.898265 TGTGATCCCAAGATTCCAAAAACA 59.102 37.500 0.00 0.00 30.90 2.83
3245 6403 5.365025 TGTGATCCCAAGATTCCAAAAACAA 59.635 36.000 0.00 0.00 30.90 2.83
3246 6404 6.126940 TGTGATCCCAAGATTCCAAAAACAAA 60.127 34.615 0.00 0.00 30.90 2.83
3247 6405 6.765512 GTGATCCCAAGATTCCAAAAACAAAA 59.234 34.615 0.00 0.00 30.90 2.44
3248 6406 7.445096 GTGATCCCAAGATTCCAAAAACAAAAT 59.555 33.333 0.00 0.00 30.90 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 0.037590 CACCGTCCATTCCTGGGAAA 59.962 55.000 6.14 0.00 43.34 3.13
493 569 1.334960 CGTGAGCCATTTTGTCCACAC 60.335 52.381 0.00 0.00 0.00 3.82
583 663 4.980805 GCTTGTCCACGCCCGTCA 62.981 66.667 0.00 0.00 0.00 4.35
613 693 2.513897 GCGTTTCCTCCCATCCGG 60.514 66.667 0.00 0.00 0.00 5.14
626 707 3.382832 CCCTCTCTCCGTGGCGTT 61.383 66.667 0.00 0.00 0.00 4.84
948 1032 1.776662 TATAGCCGCTGTCAAGGAGT 58.223 50.000 2.16 0.00 0.00 3.85
986 1070 3.391506 TGTGACTGATGAAGGTGTCTG 57.608 47.619 0.00 0.00 0.00 3.51
987 1071 4.384056 CTTTGTGACTGATGAAGGTGTCT 58.616 43.478 0.00 0.00 0.00 3.41
1210 1295 1.433199 TCCTTCTCCTTGTCCTCCTCA 59.567 52.381 0.00 0.00 0.00 3.86
1371 1459 5.673568 GCAAAGCGCTACTGAATCATGTAAA 60.674 40.000 20.43 0.00 37.77 2.01
1372 1460 4.201812 GCAAAGCGCTACTGAATCATGTAA 60.202 41.667 20.43 0.00 37.77 2.41
1373 1461 3.309682 GCAAAGCGCTACTGAATCATGTA 59.690 43.478 20.43 0.00 37.77 2.29
1403 1495 7.502060 ACCATGACATATCCTAATTCCCTAG 57.498 40.000 0.00 0.00 0.00 3.02
1406 1498 6.306987 ACAACCATGACATATCCTAATTCCC 58.693 40.000 0.00 0.00 0.00 3.97
1421 1517 3.435327 GTCAGTAATCGCAACAACCATGA 59.565 43.478 0.00 0.00 0.00 3.07
1450 1546 3.940221 ACTAGACTGTACAGACGATCACC 59.060 47.826 29.30 7.35 0.00 4.02
1484 1580 2.428890 GTTGTCATCGATCACCTCCTCT 59.571 50.000 0.00 0.00 0.00 3.69
1538 1634 1.172175 CCTGGAGCTTTTCCTTGAGC 58.828 55.000 0.00 0.00 46.92 4.26
1547 1643 1.381851 CAGCTTCCCCTGGAGCTTT 59.618 57.895 5.70 0.00 35.28 3.51
1646 1742 4.386951 TCGGTGTCATGGTGGCCG 62.387 66.667 0.00 10.94 43.32 6.13
1647 1743 2.746277 GTCGGTGTCATGGTGGCC 60.746 66.667 0.00 0.00 0.00 5.36
1648 1744 3.118454 CGTCGGTGTCATGGTGGC 61.118 66.667 0.00 0.00 0.00 5.01
1649 1745 1.736645 GACGTCGGTGTCATGGTGG 60.737 63.158 0.00 0.00 38.75 4.61
1650 1746 2.086426 CGACGTCGGTGTCATGGTG 61.086 63.158 29.70 0.00 38.84 4.17
1651 1747 2.257371 CGACGTCGGTGTCATGGT 59.743 61.111 29.70 0.00 38.84 3.55
1652 1748 1.800315 GACGACGTCGGTGTCATGG 60.800 63.158 37.89 11.09 44.95 3.66
1688 1784 1.797933 CGCCTCTGTCTTCACGTCG 60.798 63.158 0.00 0.00 0.00 5.12
1854 1974 4.154347 GCTGCTCACCTCCTCGGG 62.154 72.222 0.00 0.00 36.97 5.14
2183 2303 6.084326 AGTGCCCATAAGTAAACAAACTTG 57.916 37.500 0.00 0.00 39.95 3.16
2309 2435 7.430441 ACAATATATCCACCGCCAAAATAAAC 58.570 34.615 0.00 0.00 0.00 2.01
2313 2439 5.738783 GCAACAATATATCCACCGCCAAAAT 60.739 40.000 0.00 0.00 0.00 1.82
2317 2443 2.226330 GCAACAATATATCCACCGCCA 58.774 47.619 0.00 0.00 0.00 5.69
2318 2444 1.196808 CGCAACAATATATCCACCGCC 59.803 52.381 0.00 0.00 0.00 6.13
2319 2445 1.871039 ACGCAACAATATATCCACCGC 59.129 47.619 0.00 0.00 0.00 5.68
2320 2446 4.545823 AAACGCAACAATATATCCACCG 57.454 40.909 0.00 0.00 0.00 4.94
2322 2448 6.946508 CGTAAAACGCAACAATATATCCAC 57.053 37.500 0.00 0.00 33.65 4.02
2341 2467 7.749808 TGTTTCTAACAACAATTCACACGTAA 58.250 30.769 0.00 0.00 38.72 3.18
2349 2475 6.978080 ACACACCATGTTTCTAACAACAATTC 59.022 34.615 0.00 0.00 45.86 2.17
2358 2484 5.906113 AAACACACACACCATGTTTCTAA 57.094 34.783 0.00 0.00 41.53 2.10
2360 2486 4.799564 AAAACACACACACCATGTTTCT 57.200 36.364 2.35 0.00 43.85 2.52
2365 2491 1.932511 GCCAAAAACACACACACCATG 59.067 47.619 0.00 0.00 0.00 3.66
2375 2501 6.576551 TTGTAAATTTCTCGCCAAAAACAC 57.423 33.333 0.00 0.00 0.00 3.32
2377 2503 7.637709 AGATTGTAAATTTCTCGCCAAAAAC 57.362 32.000 0.00 0.00 0.00 2.43
2384 2510 6.049790 AGGGAGTAGATTGTAAATTTCTCGC 58.950 40.000 0.00 1.29 35.11 5.03
2386 2512 6.702282 CGGAGGGAGTAGATTGTAAATTTCTC 59.298 42.308 0.00 0.00 0.00 2.87
2387 2513 6.156429 ACGGAGGGAGTAGATTGTAAATTTCT 59.844 38.462 0.00 0.00 0.00 2.52
2388 2514 6.346896 ACGGAGGGAGTAGATTGTAAATTTC 58.653 40.000 0.00 0.00 0.00 2.17
2389 2515 6.309389 ACGGAGGGAGTAGATTGTAAATTT 57.691 37.500 0.00 0.00 0.00 1.82
2390 2516 5.952347 ACGGAGGGAGTAGATTGTAAATT 57.048 39.130 0.00 0.00 0.00 1.82
2396 2522 1.413077 GGGAACGGAGGGAGTAGATTG 59.587 57.143 0.00 0.00 0.00 2.67
2397 2523 1.007963 TGGGAACGGAGGGAGTAGATT 59.992 52.381 0.00 0.00 0.00 2.40
2399 2525 0.410663 TTGGGAACGGAGGGAGTAGA 59.589 55.000 0.00 0.00 0.00 2.59
2400 2526 1.272807 TTTGGGAACGGAGGGAGTAG 58.727 55.000 0.00 0.00 0.00 2.57
2402 2528 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2403 2529 4.041691 ACATATATTTGGGAACGGAGGGAG 59.958 45.833 0.00 0.00 0.00 4.30
2404 2530 3.977999 ACATATATTTGGGAACGGAGGGA 59.022 43.478 0.00 0.00 0.00 4.20
2405 2531 4.041691 AGACATATATTTGGGAACGGAGGG 59.958 45.833 0.00 0.00 0.00 4.30
2406 2532 5.228945 AGACATATATTTGGGAACGGAGG 57.771 43.478 0.00 0.00 0.00 4.30
2407 2533 6.992715 AGAAAGACATATATTTGGGAACGGAG 59.007 38.462 0.00 0.00 0.00 4.63
2409 2535 8.148351 TCTAGAAAGACATATATTTGGGAACGG 58.852 37.037 0.00 0.00 0.00 4.44
2410 2536 9.542462 TTCTAGAAAGACATATATTTGGGAACG 57.458 33.333 1.68 0.00 0.00 3.95
2451 2577 9.326413 CGTATGTAGTCCCTTGATAAAATTTCT 57.674 33.333 0.00 0.00 0.00 2.52
2453 2579 9.675464 TTCGTATGTAGTCCCTTGATAAAATTT 57.325 29.630 0.00 0.00 0.00 1.82
2454 2580 9.675464 TTTCGTATGTAGTCCCTTGATAAAATT 57.325 29.630 0.00 0.00 0.00 1.82
2460 2586 9.847224 ATTTTATTTCGTATGTAGTCCCTTGAT 57.153 29.630 0.00 0.00 0.00 2.57
2487 3685 9.209175 GACATGTTTTAGAGTGTAGATTCACTT 57.791 33.333 0.00 0.00 46.81 3.16
2511 3709 9.985318 GACTACAACATACGGATGTATATAGAC 57.015 37.037 23.06 16.72 45.93 2.59
2513 3711 8.953313 TGGACTACAACATACGGATGTATATAG 58.047 37.037 15.10 16.95 45.93 1.31
2514 3712 8.866970 TGGACTACAACATACGGATGTATATA 57.133 34.615 15.10 6.07 45.93 0.86
2516 3714 7.770366 ATGGACTACAACATACGGATGTATA 57.230 36.000 15.10 8.98 45.93 1.47
2518 3716 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
2520 3718 5.815222 TCAAATGGACTACAACATACGGATG 59.185 40.000 5.94 5.94 39.16 3.51
2521 3719 5.984725 TCAAATGGACTACAACATACGGAT 58.015 37.500 0.00 0.00 0.00 4.18
2522 3720 5.408880 TCAAATGGACTACAACATACGGA 57.591 39.130 0.00 0.00 0.00 4.69
2528 3726 5.690865 AGAGGTTTCAAATGGACTACAACA 58.309 37.500 0.00 0.00 0.00 3.33
2529 3727 7.739498 TTAGAGGTTTCAAATGGACTACAAC 57.261 36.000 0.00 0.00 0.00 3.32
2530 3728 8.754991 TTTTAGAGGTTTCAAATGGACTACAA 57.245 30.769 0.00 0.00 0.00 2.41
2554 3752 9.338622 CCATCCGTTCCTAAATATAAGTCTTTT 57.661 33.333 0.00 0.00 0.00 2.27
2557 3755 7.509659 ACTCCATCCGTTCCTAAATATAAGTCT 59.490 37.037 0.00 0.00 0.00 3.24
2558 3756 7.668492 ACTCCATCCGTTCCTAAATATAAGTC 58.332 38.462 0.00 0.00 0.00 3.01
2559 3757 7.613551 ACTCCATCCGTTCCTAAATATAAGT 57.386 36.000 0.00 0.00 0.00 2.24
2564 3762 8.888836 TGATATACTCCATCCGTTCCTAAATA 57.111 34.615 0.00 0.00 0.00 1.40
2565 3763 7.792364 TGATATACTCCATCCGTTCCTAAAT 57.208 36.000 0.00 0.00 0.00 1.40
2566 3764 7.606135 TTGATATACTCCATCCGTTCCTAAA 57.394 36.000 0.00 0.00 0.00 1.85
2567 3765 7.453439 TCATTGATATACTCCATCCGTTCCTAA 59.547 37.037 0.00 0.00 0.00 2.69
2569 3767 5.780282 TCATTGATATACTCCATCCGTTCCT 59.220 40.000 0.00 0.00 0.00 3.36
2570 3768 6.037786 TCATTGATATACTCCATCCGTTCC 57.962 41.667 0.00 0.00 0.00 3.62
2571 3769 7.413438 GCATTCATTGATATACTCCATCCGTTC 60.413 40.741 0.00 0.00 0.00 3.95
2574 3772 5.876460 TGCATTCATTGATATACTCCATCCG 59.124 40.000 0.00 0.00 0.00 4.18
2575 3773 6.883217 ACTGCATTCATTGATATACTCCATCC 59.117 38.462 0.00 0.00 0.00 3.51
2576 3774 7.918536 ACTGCATTCATTGATATACTCCATC 57.081 36.000 0.00 0.00 0.00 3.51
2579 3777 9.579768 CTAGTACTGCATTCATTGATATACTCC 57.420 37.037 5.39 0.00 0.00 3.85
2584 3782 8.093307 CACCTCTAGTACTGCATTCATTGATAT 58.907 37.037 5.39 0.00 0.00 1.63
2587 3785 5.422012 TCACCTCTAGTACTGCATTCATTGA 59.578 40.000 5.39 0.00 0.00 2.57
2588 3786 5.664457 TCACCTCTAGTACTGCATTCATTG 58.336 41.667 5.39 0.00 0.00 2.82
2589 3787 5.939764 TCACCTCTAGTACTGCATTCATT 57.060 39.130 5.39 0.00 0.00 2.57
2591 3789 7.418337 TTTATCACCTCTAGTACTGCATTCA 57.582 36.000 5.39 0.00 0.00 2.57
2595 3793 9.595823 GTAATTTTTATCACCTCTAGTACTGCA 57.404 33.333 5.39 0.00 0.00 4.41
2608 5766 9.180678 CTCCACACTTGTTGTAATTTTTATCAC 57.819 33.333 0.00 0.00 35.67 3.06
2616 5774 8.157476 ACTATCTTCTCCACACTTGTTGTAATT 58.843 33.333 0.00 0.00 35.67 1.40
2617 5775 7.680730 ACTATCTTCTCCACACTTGTTGTAAT 58.319 34.615 0.00 0.00 35.67 1.89
2625 5783 4.712337 CCCAGTACTATCTTCTCCACACTT 59.288 45.833 0.00 0.00 0.00 3.16
2626 5784 4.264442 ACCCAGTACTATCTTCTCCACACT 60.264 45.833 0.00 0.00 0.00 3.55
2627 5785 4.024670 ACCCAGTACTATCTTCTCCACAC 58.975 47.826 0.00 0.00 0.00 3.82
2628 5786 4.332683 ACCCAGTACTATCTTCTCCACA 57.667 45.455 0.00 0.00 0.00 4.17
2629 5787 5.678955 AAACCCAGTACTATCTTCTCCAC 57.321 43.478 0.00 0.00 0.00 4.02
2632 5790 4.567159 CGCAAAACCCAGTACTATCTTCTC 59.433 45.833 0.00 0.00 0.00 2.87
2643 5801 1.898574 CTGAGCCGCAAAACCCAGT 60.899 57.895 0.00 0.00 0.00 4.00
2644 5802 1.580845 CTCTGAGCCGCAAAACCCAG 61.581 60.000 0.00 0.00 0.00 4.45
2645 5803 1.600636 CTCTGAGCCGCAAAACCCA 60.601 57.895 0.00 0.00 0.00 4.51
2646 5804 2.982744 GCTCTGAGCCGCAAAACCC 61.983 63.158 18.80 0.00 34.48 4.11
2647 5805 1.968540 AGCTCTGAGCCGCAAAACC 60.969 57.895 25.09 0.00 43.77 3.27
2648 5806 1.208614 CAGCTCTGAGCCGCAAAAC 59.791 57.895 25.09 0.00 43.77 2.43
2649 5807 2.620112 GCAGCTCTGAGCCGCAAAA 61.620 57.895 27.96 0.00 43.77 2.44
2650 5808 3.052082 GCAGCTCTGAGCCGCAAA 61.052 61.111 27.96 0.00 43.77 3.68
2653 5811 3.947132 TTCTGCAGCTCTGAGCCGC 62.947 63.158 26.66 26.66 44.54 6.53
2654 5812 0.952497 TTTTCTGCAGCTCTGAGCCG 60.952 55.000 25.09 17.00 43.77 5.52
2655 5813 1.461559 ATTTTCTGCAGCTCTGAGCC 58.538 50.000 25.09 12.07 43.77 4.70
2656 5814 4.897025 ATAATTTTCTGCAGCTCTGAGC 57.103 40.909 21.72 21.72 42.84 4.26
2657 5815 7.551035 ACTTATAATTTTCTGCAGCTCTGAG 57.449 36.000 9.47 0.00 0.00 3.35
2658 5816 7.201556 CGAACTTATAATTTTCTGCAGCTCTGA 60.202 37.037 9.47 0.00 0.00 3.27
2659 5817 6.904011 CGAACTTATAATTTTCTGCAGCTCTG 59.096 38.462 9.47 0.00 0.00 3.35
2660 5818 6.595716 ACGAACTTATAATTTTCTGCAGCTCT 59.404 34.615 9.47 0.00 0.00 4.09
2661 5819 6.776094 ACGAACTTATAATTTTCTGCAGCTC 58.224 36.000 9.47 0.00 0.00 4.09
2662 5820 6.743575 ACGAACTTATAATTTTCTGCAGCT 57.256 33.333 9.47 0.00 0.00 4.24
2663 5821 6.192863 CGAACGAACTTATAATTTTCTGCAGC 59.807 38.462 9.47 0.00 0.00 5.25
2664 5822 7.214449 CACGAACGAACTTATAATTTTCTGCAG 59.786 37.037 7.63 7.63 0.00 4.41
2665 5823 7.012943 CACGAACGAACTTATAATTTTCTGCA 58.987 34.615 0.14 0.00 0.00 4.41
2666 5824 7.231607 TCACGAACGAACTTATAATTTTCTGC 58.768 34.615 0.14 0.00 0.00 4.26
2667 5825 8.433126 ACTCACGAACGAACTTATAATTTTCTG 58.567 33.333 0.14 3.23 0.00 3.02
2668 5826 8.530269 ACTCACGAACGAACTTATAATTTTCT 57.470 30.769 0.14 0.00 0.00 2.52
2669 5827 9.590088 AAACTCACGAACGAACTTATAATTTTC 57.410 29.630 0.14 0.00 0.00 2.29
2670 5828 9.940166 AAAACTCACGAACGAACTTATAATTTT 57.060 25.926 0.14 0.00 0.00 1.82
2671 5829 9.940166 AAAAACTCACGAACGAACTTATAATTT 57.060 25.926 0.14 0.00 0.00 1.82
2694 5852 6.205853 TCGAAAGTCTATTAGCCAAGCAAAAA 59.794 34.615 0.00 0.00 0.00 1.94
2695 5853 5.703592 TCGAAAGTCTATTAGCCAAGCAAAA 59.296 36.000 0.00 0.00 0.00 2.44
2696 5854 5.121768 GTCGAAAGTCTATTAGCCAAGCAAA 59.878 40.000 0.00 0.00 0.00 3.68
2697 5855 4.630069 GTCGAAAGTCTATTAGCCAAGCAA 59.370 41.667 0.00 0.00 0.00 3.91
2698 5856 4.081642 AGTCGAAAGTCTATTAGCCAAGCA 60.082 41.667 0.00 0.00 0.00 3.91
2699 5857 4.434520 AGTCGAAAGTCTATTAGCCAAGC 58.565 43.478 0.00 0.00 0.00 4.01
2700 5858 6.100004 TGAAGTCGAAAGTCTATTAGCCAAG 58.900 40.000 0.00 0.00 0.00 3.61
2701 5859 6.032956 TGAAGTCGAAAGTCTATTAGCCAA 57.967 37.500 0.00 0.00 0.00 4.52
2702 5860 5.654603 TGAAGTCGAAAGTCTATTAGCCA 57.345 39.130 0.00 0.00 0.00 4.75
2703 5861 5.867716 TGTTGAAGTCGAAAGTCTATTAGCC 59.132 40.000 0.00 0.00 0.00 3.93
2704 5862 6.946229 TGTTGAAGTCGAAAGTCTATTAGC 57.054 37.500 0.00 0.00 0.00 3.09
2705 5863 8.979574 AGTTTGTTGAAGTCGAAAGTCTATTAG 58.020 33.333 0.00 0.00 0.00 1.73
2706 5864 8.882415 AGTTTGTTGAAGTCGAAAGTCTATTA 57.118 30.769 0.00 0.00 0.00 0.98
2707 5865 7.787725 AGTTTGTTGAAGTCGAAAGTCTATT 57.212 32.000 0.00 0.00 0.00 1.73
2708 5866 8.882415 TTAGTTTGTTGAAGTCGAAAGTCTAT 57.118 30.769 0.00 0.00 0.00 1.98
2709 5867 8.882415 ATTAGTTTGTTGAAGTCGAAAGTCTA 57.118 30.769 0.00 0.00 0.00 2.59
2710 5868 7.711339 AGATTAGTTTGTTGAAGTCGAAAGTCT 59.289 33.333 0.00 0.00 0.00 3.24
2711 5869 7.852516 AGATTAGTTTGTTGAAGTCGAAAGTC 58.147 34.615 0.00 0.00 0.00 3.01
2718 5876 9.803315 AAAAAGGAAGATTAGTTTGTTGAAGTC 57.197 29.630 0.00 0.00 0.00 3.01
2732 5890 8.040727 ACTACAAGCAAAACAAAAAGGAAGATT 58.959 29.630 0.00 0.00 0.00 2.40
2738 5896 9.139174 CCATATACTACAAGCAAAACAAAAAGG 57.861 33.333 0.00 0.00 0.00 3.11
2756 5914 7.973048 TGAGGACACTAAGTTTCCATATACT 57.027 36.000 3.30 0.00 35.09 2.12
2765 5923 7.898014 AAGGAAAATTGAGGACACTAAGTTT 57.102 32.000 0.00 0.00 0.00 2.66
2768 5926 6.152379 GCAAAGGAAAATTGAGGACACTAAG 58.848 40.000 0.00 0.00 0.00 2.18
2819 5977 1.620822 AAAGCCTCAAAAGCATCGGT 58.379 45.000 0.00 0.00 0.00 4.69
2820 5978 3.129287 ACATAAAGCCTCAAAAGCATCGG 59.871 43.478 0.00 0.00 0.00 4.18
2821 5979 4.361451 ACATAAAGCCTCAAAAGCATCG 57.639 40.909 0.00 0.00 0.00 3.84
2902 6060 2.745821 GCATGACTTCTTGCACATGAGA 59.254 45.455 14.84 0.00 43.80 3.27
2949 6107 5.125417 GCAAAGAAGCCAAACCACTATATGA 59.875 40.000 0.00 0.00 0.00 2.15
2975 6133 6.012745 AGAAGCCCATGTCAGTATTTTCTTT 58.987 36.000 0.00 0.00 0.00 2.52
3003 6161 3.206412 AGGCCATGTATATTTTGACCCCA 59.794 43.478 5.01 0.00 0.00 4.96
3024 6182 9.474249 GCACGCTTACTAGTTTTAGATAAAAAG 57.526 33.333 0.00 0.00 37.74 2.27
3025 6183 8.991026 TGCACGCTTACTAGTTTTAGATAAAAA 58.009 29.630 0.00 0.00 36.97 1.94
3026 6184 8.437742 GTGCACGCTTACTAGTTTTAGATAAAA 58.562 33.333 0.00 0.00 33.17 1.52
3027 6185 7.201376 CGTGCACGCTTACTAGTTTTAGATAAA 60.201 37.037 28.16 0.00 0.00 1.40
3028 6186 6.252015 CGTGCACGCTTACTAGTTTTAGATAA 59.748 38.462 28.16 0.00 0.00 1.75
3029 6187 5.740569 CGTGCACGCTTACTAGTTTTAGATA 59.259 40.000 28.16 0.00 0.00 1.98
3030 6188 4.561606 CGTGCACGCTTACTAGTTTTAGAT 59.438 41.667 28.16 0.00 0.00 1.98
3031 6189 3.916172 CGTGCACGCTTACTAGTTTTAGA 59.084 43.478 28.16 0.00 0.00 2.10
3032 6190 3.671928 ACGTGCACGCTTACTAGTTTTAG 59.328 43.478 37.35 7.41 44.43 1.85
3033 6191 3.426191 CACGTGCACGCTTACTAGTTTTA 59.574 43.478 37.35 0.00 44.43 1.52
3034 6192 2.220133 CACGTGCACGCTTACTAGTTTT 59.780 45.455 37.35 12.01 44.43 2.43
3035 6193 1.790623 CACGTGCACGCTTACTAGTTT 59.209 47.619 37.35 12.57 44.43 2.66
3036 6194 1.415374 CACGTGCACGCTTACTAGTT 58.585 50.000 37.35 13.37 44.43 2.24
3037 6195 1.007336 GCACGTGCACGCTTACTAGT 61.007 55.000 37.35 14.16 44.43 2.57
3038 6196 1.702299 GCACGTGCACGCTTACTAG 59.298 57.895 37.35 19.04 44.43 2.57
3039 6197 3.850923 GCACGTGCACGCTTACTA 58.149 55.556 37.35 0.00 44.43 1.82
3054 6212 2.303163 ATTAGGATACGTGCGTTGCA 57.697 45.000 1.66 0.00 46.39 4.08
3055 6213 4.511734 GTTTATTAGGATACGTGCGTTGC 58.488 43.478 1.66 0.00 46.39 4.17
3056 6214 4.567558 TGGTTTATTAGGATACGTGCGTTG 59.432 41.667 1.66 0.00 46.39 4.10
3057 6215 4.567959 GTGGTTTATTAGGATACGTGCGTT 59.432 41.667 1.66 0.00 46.39 4.84
3058 6216 4.114794 GTGGTTTATTAGGATACGTGCGT 58.885 43.478 0.00 2.05 46.39 5.24
3059 6217 4.114073 TGTGGTTTATTAGGATACGTGCG 58.886 43.478 0.00 0.00 46.39 5.34
3060 6218 6.613755 ATTGTGGTTTATTAGGATACGTGC 57.386 37.500 0.00 0.00 46.39 5.34
3074 6232 9.225436 ACAAAGTTCATGTTTTTATTGTGGTTT 57.775 25.926 0.00 0.00 0.00 3.27
3075 6233 8.785329 ACAAAGTTCATGTTTTTATTGTGGTT 57.215 26.923 0.00 0.00 0.00 3.67
3076 6234 8.257306 AGACAAAGTTCATGTTTTTATTGTGGT 58.743 29.630 8.33 0.00 30.58 4.16
3077 6235 8.647143 AGACAAAGTTCATGTTTTTATTGTGG 57.353 30.769 8.33 0.00 30.58 4.17
3078 6236 9.904647 CAAGACAAAGTTCATGTTTTTATTGTG 57.095 29.630 8.33 0.00 30.58 3.33
3079 6237 9.651913 ACAAGACAAAGTTCATGTTTTTATTGT 57.348 25.926 0.00 0.00 32.89 2.71
3080 6238 9.904647 CACAAGACAAAGTTCATGTTTTTATTG 57.095 29.630 0.00 0.00 0.00 1.90
3081 6239 9.651913 ACACAAGACAAAGTTCATGTTTTTATT 57.348 25.926 0.00 0.00 0.00 1.40
3082 6240 9.651913 AACACAAGACAAAGTTCATGTTTTTAT 57.348 25.926 0.00 0.00 0.00 1.40
3083 6241 9.482627 AAACACAAGACAAAGTTCATGTTTTTA 57.517 25.926 0.00 0.00 35.99 1.52
3084 6242 7.961325 AACACAAGACAAAGTTCATGTTTTT 57.039 28.000 0.00 0.00 0.00 1.94
3085 6243 7.961325 AAACACAAGACAAAGTTCATGTTTT 57.039 28.000 0.00 0.00 35.99 2.43
3086 6244 7.961325 AAAACACAAGACAAAGTTCATGTTT 57.039 28.000 0.00 0.00 39.91 2.83
3087 6245 7.961325 AAAAACACAAGACAAAGTTCATGTT 57.039 28.000 0.00 0.00 0.00 2.71
3088 6246 7.544217 GGTAAAAACACAAGACAAAGTTCATGT 59.456 33.333 0.00 0.00 0.00 3.21
3089 6247 7.543868 TGGTAAAAACACAAGACAAAGTTCATG 59.456 33.333 0.00 0.00 0.00 3.07
3090 6248 7.607250 TGGTAAAAACACAAGACAAAGTTCAT 58.393 30.769 0.00 0.00 0.00 2.57
3091 6249 6.982852 TGGTAAAAACACAAGACAAAGTTCA 58.017 32.000 0.00 0.00 0.00 3.18
3092 6250 7.309920 TCTGGTAAAAACACAAGACAAAGTTC 58.690 34.615 0.00 0.00 0.00 3.01
3093 6251 7.222000 TCTGGTAAAAACACAAGACAAAGTT 57.778 32.000 0.00 0.00 0.00 2.66
3094 6252 6.827586 TCTGGTAAAAACACAAGACAAAGT 57.172 33.333 0.00 0.00 0.00 2.66
3095 6253 7.087639 TGTTCTGGTAAAAACACAAGACAAAG 58.912 34.615 0.00 0.00 27.82 2.77
3096 6254 6.982852 TGTTCTGGTAAAAACACAAGACAAA 58.017 32.000 0.00 0.00 27.82 2.83
3097 6255 6.576662 TGTTCTGGTAAAAACACAAGACAA 57.423 33.333 0.00 0.00 27.82 3.18
3098 6256 6.767524 ATGTTCTGGTAAAAACACAAGACA 57.232 33.333 0.00 0.00 38.14 3.41
3099 6257 9.575783 TTAAATGTTCTGGTAAAAACACAAGAC 57.424 29.630 0.00 0.00 38.14 3.01
3103 6261 8.821894 GCATTTAAATGTTCTGGTAAAAACACA 58.178 29.630 25.15 0.00 38.14 3.72
3104 6262 8.001549 CGCATTTAAATGTTCTGGTAAAAACAC 58.998 33.333 25.15 5.84 38.14 3.32
3105 6263 7.707035 ACGCATTTAAATGTTCTGGTAAAAACA 59.293 29.630 25.15 0.00 39.52 2.83
3106 6264 8.001549 CACGCATTTAAATGTTCTGGTAAAAAC 58.998 33.333 25.15 6.75 38.65 2.43
3107 6265 7.707035 ACACGCATTTAAATGTTCTGGTAAAAA 59.293 29.630 25.15 0.00 38.65 1.94
3108 6266 7.203910 ACACGCATTTAAATGTTCTGGTAAAA 58.796 30.769 25.15 0.00 38.65 1.52
3109 6267 6.740110 ACACGCATTTAAATGTTCTGGTAAA 58.260 32.000 25.15 0.00 38.65 2.01
3110 6268 6.017026 TGACACGCATTTAAATGTTCTGGTAA 60.017 34.615 25.15 10.40 38.65 2.85
3111 6269 5.470437 TGACACGCATTTAAATGTTCTGGTA 59.530 36.000 25.15 10.98 38.65 3.25
3112 6270 4.277174 TGACACGCATTTAAATGTTCTGGT 59.723 37.500 25.15 17.12 38.65 4.00
3113 6271 4.616802 GTGACACGCATTTAAATGTTCTGG 59.383 41.667 25.15 14.69 38.65 3.86
3114 6272 4.318071 CGTGACACGCATTTAAATGTTCTG 59.682 41.667 25.15 19.40 38.65 3.02
3115 6273 4.463209 CGTGACACGCATTTAAATGTTCT 58.537 39.130 25.15 9.11 38.65 3.01
3116 6274 4.782475 CGTGACACGCATTTAAATGTTC 57.218 40.909 25.15 17.34 38.65 3.18
3129 6287 2.160615 TCAAATTATTGGGCGTGACACG 59.839 45.455 23.43 23.43 39.76 4.49
3130 6288 3.840890 TCAAATTATTGGGCGTGACAC 57.159 42.857 0.00 0.00 37.15 3.67
3131 6289 4.742417 CATTCAAATTATTGGGCGTGACA 58.258 39.130 0.00 0.00 37.15 3.58
3132 6290 3.551485 GCATTCAAATTATTGGGCGTGAC 59.449 43.478 0.00 0.00 37.15 3.67
3133 6291 3.194329 TGCATTCAAATTATTGGGCGTGA 59.806 39.130 0.00 0.00 37.15 4.35
3134 6292 3.519579 TGCATTCAAATTATTGGGCGTG 58.480 40.909 0.00 0.00 37.15 5.34
3135 6293 3.883830 TGCATTCAAATTATTGGGCGT 57.116 38.095 0.00 0.00 37.15 5.68
3136 6294 6.841443 TTATTGCATTCAAATTATTGGGCG 57.159 33.333 0.00 0.00 37.15 6.13
3164 6322 9.975218 AAAGAAGACCTATGGCTTAATCTAAAA 57.025 29.630 0.00 0.00 0.00 1.52
3165 6323 9.396022 CAAAGAAGACCTATGGCTTAATCTAAA 57.604 33.333 0.00 0.00 0.00 1.85
3166 6324 8.768397 TCAAAGAAGACCTATGGCTTAATCTAA 58.232 33.333 0.00 0.00 0.00 2.10
3167 6325 8.204836 GTCAAAGAAGACCTATGGCTTAATCTA 58.795 37.037 0.00 0.00 32.36 1.98
3168 6326 7.051000 GTCAAAGAAGACCTATGGCTTAATCT 58.949 38.462 0.00 0.00 32.36 2.40
3169 6327 7.011857 CAGTCAAAGAAGACCTATGGCTTAATC 59.988 40.741 0.00 0.00 39.34 1.75
3170 6328 6.825721 CAGTCAAAGAAGACCTATGGCTTAAT 59.174 38.462 0.00 0.00 39.34 1.40
3171 6329 6.173339 CAGTCAAAGAAGACCTATGGCTTAA 58.827 40.000 0.00 0.00 39.34 1.85
3172 6330 5.338381 CCAGTCAAAGAAGACCTATGGCTTA 60.338 44.000 0.00 0.00 39.34 3.09
3173 6331 4.566488 CCAGTCAAAGAAGACCTATGGCTT 60.566 45.833 0.00 0.00 39.34 4.35
3174 6332 3.054802 CCAGTCAAAGAAGACCTATGGCT 60.055 47.826 0.00 0.00 39.34 4.75
3175 6333 3.274288 CCAGTCAAAGAAGACCTATGGC 58.726 50.000 0.00 0.00 39.34 4.40
3176 6334 4.020218 TCACCAGTCAAAGAAGACCTATGG 60.020 45.833 0.00 0.00 39.34 2.74
3177 6335 5.152623 TCACCAGTCAAAGAAGACCTATG 57.847 43.478 0.00 0.00 39.34 2.23
3178 6336 5.825593 TTCACCAGTCAAAGAAGACCTAT 57.174 39.130 0.00 0.00 39.34 2.57
3179 6337 5.365605 TCTTTCACCAGTCAAAGAAGACCTA 59.634 40.000 0.00 0.00 39.34 3.08
3180 6338 4.164221 TCTTTCACCAGTCAAAGAAGACCT 59.836 41.667 0.00 0.00 39.34 3.85
3181 6339 4.273724 GTCTTTCACCAGTCAAAGAAGACC 59.726 45.833 0.00 0.00 39.71 3.85
3182 6340 5.119694 AGTCTTTCACCAGTCAAAGAAGAC 58.880 41.667 0.00 0.00 39.71 3.01
3183 6341 5.359194 AGTCTTTCACCAGTCAAAGAAGA 57.641 39.130 0.00 0.00 39.71 2.87
3184 6342 5.008118 GGAAGTCTTTCACCAGTCAAAGAAG 59.992 44.000 0.00 0.00 39.71 2.85
3185 6343 4.881850 GGAAGTCTTTCACCAGTCAAAGAA 59.118 41.667 0.00 0.00 39.71 2.52
3186 6344 4.080582 TGGAAGTCTTTCACCAGTCAAAGA 60.081 41.667 0.00 0.00 36.49 2.52
3187 6345 4.199310 TGGAAGTCTTTCACCAGTCAAAG 58.801 43.478 0.00 0.00 34.90 2.77
3188 6346 4.229304 TGGAAGTCTTTCACCAGTCAAA 57.771 40.909 0.00 0.00 34.90 2.69
3189 6347 3.924114 TGGAAGTCTTTCACCAGTCAA 57.076 42.857 0.00 0.00 34.90 3.18
3190 6348 4.136796 CAATGGAAGTCTTTCACCAGTCA 58.863 43.478 0.00 0.00 35.84 3.41
3191 6349 4.137543 ACAATGGAAGTCTTTCACCAGTC 58.862 43.478 0.00 0.00 35.84 3.51
3192 6350 4.170468 ACAATGGAAGTCTTTCACCAGT 57.830 40.909 0.00 0.00 35.84 4.00
3193 6351 6.633500 TTAACAATGGAAGTCTTTCACCAG 57.367 37.500 0.00 0.00 35.84 4.00
3194 6352 7.069331 ACATTTAACAATGGAAGTCTTTCACCA 59.931 33.333 0.00 0.00 43.82 4.17
3195 6353 7.433680 ACATTTAACAATGGAAGTCTTTCACC 58.566 34.615 0.00 0.00 43.82 4.02
3196 6354 8.755018 CAACATTTAACAATGGAAGTCTTTCAC 58.245 33.333 0.00 0.00 43.82 3.18
3197 6355 8.474025 ACAACATTTAACAATGGAAGTCTTTCA 58.526 29.630 0.00 0.00 43.82 2.69
3198 6356 8.755018 CACAACATTTAACAATGGAAGTCTTTC 58.245 33.333 0.31 0.00 43.82 2.62
3199 6357 8.474025 TCACAACATTTAACAATGGAAGTCTTT 58.526 29.630 0.31 0.00 43.82 2.52
3200 6358 8.006298 TCACAACATTTAACAATGGAAGTCTT 57.994 30.769 0.31 0.00 43.82 3.01
3201 6359 7.581213 TCACAACATTTAACAATGGAAGTCT 57.419 32.000 0.31 0.00 43.82 3.24
3202 6360 7.542130 GGATCACAACATTTAACAATGGAAGTC 59.458 37.037 0.00 0.00 43.82 3.01
3203 6361 7.378181 GGATCACAACATTTAACAATGGAAGT 58.622 34.615 0.00 0.00 43.82 3.01
3204 6362 6.813152 GGGATCACAACATTTAACAATGGAAG 59.187 38.462 0.00 0.00 43.82 3.46
3205 6363 6.268617 TGGGATCACAACATTTAACAATGGAA 59.731 34.615 0.00 0.00 43.82 3.53
3206 6364 5.777223 TGGGATCACAACATTTAACAATGGA 59.223 36.000 0.00 0.00 43.82 3.41
3207 6365 6.035368 TGGGATCACAACATTTAACAATGG 57.965 37.500 0.00 0.00 43.82 3.16
3208 6366 7.377398 TCTTGGGATCACAACATTTAACAATG 58.623 34.615 6.21 0.00 44.90 2.82
3209 6367 7.537596 TCTTGGGATCACAACATTTAACAAT 57.462 32.000 6.21 0.00 0.00 2.71
3210 6368 6.968263 TCTTGGGATCACAACATTTAACAA 57.032 33.333 6.21 0.00 0.00 2.83
3211 6369 7.309744 GGAATCTTGGGATCACAACATTTAACA 60.310 37.037 11.85 0.00 0.00 2.41
3212 6370 7.035612 GGAATCTTGGGATCACAACATTTAAC 58.964 38.462 11.85 3.76 0.00 2.01
3213 6371 6.723515 TGGAATCTTGGGATCACAACATTTAA 59.276 34.615 11.85 2.36 0.00 1.52
3214 6372 6.252233 TGGAATCTTGGGATCACAACATTTA 58.748 36.000 11.85 3.36 0.00 1.40
3215 6373 5.085920 TGGAATCTTGGGATCACAACATTT 58.914 37.500 11.85 4.10 0.00 2.32
3216 6374 4.676109 TGGAATCTTGGGATCACAACATT 58.324 39.130 10.58 10.58 0.00 2.71
3217 6375 4.320546 TGGAATCTTGGGATCACAACAT 57.679 40.909 6.21 0.00 0.00 2.71
3218 6376 3.805066 TGGAATCTTGGGATCACAACA 57.195 42.857 6.21 0.00 0.00 3.33
3219 6377 5.467035 TTTTGGAATCTTGGGATCACAAC 57.533 39.130 6.21 0.00 31.78 3.32
3220 6378 5.365025 TGTTTTTGGAATCTTGGGATCACAA 59.635 36.000 10.61 10.61 0.00 3.33
3221 6379 4.898265 TGTTTTTGGAATCTTGGGATCACA 59.102 37.500 0.00 0.00 0.00 3.58
3222 6380 5.467035 TGTTTTTGGAATCTTGGGATCAC 57.533 39.130 0.00 0.00 0.00 3.06
3223 6381 6.491714 TTTGTTTTTGGAATCTTGGGATCA 57.508 33.333 0.00 0.00 0.00 2.92
3224 6382 7.984422 ATTTTGTTTTTGGAATCTTGGGATC 57.016 32.000 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.