Multiple sequence alignment - TraesCS6D01G234300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G234300 chr6D 100.000 4100 0 0 1 4100 328611219 328615318 0.000000e+00 7572.0
1 TraesCS6D01G234300 chr6B 92.845 3997 195 41 1 3932 492490157 492494127 0.000000e+00 5712.0
2 TraesCS6D01G234300 chr6A 94.859 2587 81 24 782 3324 467485876 467488454 0.000000e+00 3993.0
3 TraesCS6D01G234300 chr6A 93.241 503 29 3 1 500 467469579 467470079 0.000000e+00 736.0
4 TraesCS6D01G234300 chr6A 94.170 223 13 0 531 753 467485668 467485890 1.410000e-89 340.0
5 TraesCS6D01G234300 chr6A 85.714 224 27 4 3406 3625 467488449 467488671 8.860000e-57 231.0
6 TraesCS6D01G234300 chr6A 95.455 44 2 0 3488 3531 4785862 4785905 2.040000e-08 71.3
7 TraesCS6D01G234300 chr2B 81.884 138 19 5 3936 4070 475634354 475634220 1.200000e-20 111.0
8 TraesCS6D01G234300 chr3B 91.071 56 4 1 3485 3539 135685042 135685097 1.580000e-09 75.0
9 TraesCS6D01G234300 chr5A 95.556 45 2 0 3489 3533 44801099 44801143 5.680000e-09 73.1
10 TraesCS6D01G234300 chr5A 100.000 28 0 0 3383 3410 437922434 437922461 7.000000e-03 52.8
11 TraesCS6D01G234300 chr1D 95.556 45 2 0 3488 3532 358222596 358222552 5.680000e-09 73.1
12 TraesCS6D01G234300 chr1D 95.455 44 2 0 3491 3534 317590293 317590250 2.040000e-08 71.3
13 TraesCS6D01G234300 chr7A 88.525 61 4 1 3477 3537 618680966 618680909 2.040000e-08 71.3
14 TraesCS6D01G234300 chr3D 81.395 86 14 2 3934 4019 64418032 64417949 7.350000e-08 69.4
15 TraesCS6D01G234300 chr3D 100.000 28 0 0 3934 3961 570282649 570282676 7.000000e-03 52.8
16 TraesCS6D01G234300 chr1B 90.566 53 3 2 3491 3543 2525783 2525833 7.350000e-08 69.4
17 TraesCS6D01G234300 chr7D 100.000 28 0 0 3320 3347 291492637 291492664 7.000000e-03 52.8
18 TraesCS6D01G234300 chr3A 100.000 28 0 0 3934 3961 625566917 625566890 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G234300 chr6D 328611219 328615318 4099 False 7572.000000 7572 100.000 1 4100 1 chr6D.!!$F1 4099
1 TraesCS6D01G234300 chr6B 492490157 492494127 3970 False 5712.000000 5712 92.845 1 3932 1 chr6B.!!$F1 3931
2 TraesCS6D01G234300 chr6A 467485668 467488671 3003 False 1521.333333 3993 91.581 531 3625 3 chr6A.!!$F3 3094
3 TraesCS6D01G234300 chr6A 467469579 467470079 500 False 736.000000 736 93.241 1 500 1 chr6A.!!$F2 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
628 633 0.249447 CTCGCGCATCACCCTATCAA 60.249 55.0 8.75 0.0 0.00 2.57 F
1701 1717 0.689623 CTGGAGAGGAAACTGTGGCT 59.310 55.0 0.00 0.0 44.43 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2216 2253 1.553248 TCCCATCCAGACTAACAACGG 59.447 52.381 0.0 0.0 0.00 4.44 R
3596 3668 0.605319 GGTCCGGACAGCATTGTTGA 60.605 55.000 34.4 0.0 37.76 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 2.162681 CTCGGGAAGCCAGACAAAAAT 58.837 47.619 0.00 0.00 0.00 1.82
89 90 1.885887 TCGGGAAGCCAGACAAAAATG 59.114 47.619 0.00 0.00 0.00 2.32
143 144 0.250770 AAAGGAGCCCGTCAGGTTTC 60.251 55.000 0.00 0.00 38.26 2.78
233 234 2.989253 TGGAAGCTGGTCGCGAGA 60.989 61.111 10.24 0.00 45.59 4.04
299 300 2.117156 CCTCATGAAGCCCGCCTTG 61.117 63.158 0.00 0.00 32.78 3.61
340 341 1.975680 GTGTAAGTTGGGGACTCCTCA 59.024 52.381 0.00 0.00 37.72 3.86
361 362 1.557371 TCCGATTAGGGCATTGTGTCA 59.443 47.619 0.00 0.00 41.52 3.58
446 451 8.673711 CGAGATACCCAACAAATTTCATCTTAA 58.326 33.333 0.00 0.00 0.00 1.85
499 504 1.339610 CCTCTCTCATACAAGGCGAGG 59.660 57.143 0.00 0.00 32.19 4.63
500 505 0.747255 TCTCTCATACAAGGCGAGGC 59.253 55.000 0.00 0.00 0.00 4.70
521 526 5.303589 AGGCATACATCAATCAAATCCAAGG 59.696 40.000 0.00 0.00 0.00 3.61
532 537 3.010138 TCAAATCCAAGGAGGTGTAAGGG 59.990 47.826 0.00 0.00 39.02 3.95
569 574 6.546428 TTAGGGTCCAAACAACAAAAATGA 57.454 33.333 0.00 0.00 0.00 2.57
628 633 0.249447 CTCGCGCATCACCCTATCAA 60.249 55.000 8.75 0.00 0.00 2.57
638 643 5.737635 GCATCACCCTATCAAGACTACTGAC 60.738 48.000 0.00 0.00 0.00 3.51
939 955 2.614013 ATTCCGTGCCCCCTCCTT 60.614 61.111 0.00 0.00 0.00 3.36
1701 1717 0.689623 CTGGAGAGGAAACTGTGGCT 59.310 55.000 0.00 0.00 44.43 4.75
1769 1800 1.305633 CTGAGACTGGGCTGGGAGA 60.306 63.158 0.00 0.00 0.00 3.71
1772 1803 1.692042 AGACTGGGCTGGGAGATGG 60.692 63.158 0.00 0.00 0.00 3.51
1786 1817 5.624159 TGGGAGATGGTGTAATGATTGATC 58.376 41.667 0.00 0.00 0.00 2.92
1864 1895 5.104982 GGGGCAGGAAAATGTGATATTGAAA 60.105 40.000 0.00 0.00 0.00 2.69
1877 1908 6.488344 TGTGATATTGAAACTGCAGTTGGTAA 59.512 34.615 31.73 24.39 38.44 2.85
1948 1985 3.154710 ACTGTAGGTTCAGTCGATGTCA 58.845 45.455 0.00 0.00 44.07 3.58
1997 2034 7.176340 GGAGAATAATTTTGAGCCTGCAGATAT 59.824 37.037 17.39 0.00 0.00 1.63
2136 2173 2.491693 CAAGCATTATGTTGGAACCCGT 59.508 45.455 0.00 0.00 0.00 5.28
2166 2203 5.124776 CCACAACTTCACCACAAGAACTAAA 59.875 40.000 0.00 0.00 0.00 1.85
2216 2253 5.126061 ACATCATTTCCTTCACTGCCAATAC 59.874 40.000 0.00 0.00 0.00 1.89
2253 2290 4.724074 TGGGATTGATTTTGTCAGATGC 57.276 40.909 0.00 0.00 38.29 3.91
2311 2348 1.340991 GGAAGATGGTTGGCCTTGCTA 60.341 52.381 3.32 0.00 35.27 3.49
2445 2483 7.205992 TGTGTTGCTTGCTGATTTATTGTTTA 58.794 30.769 0.00 0.00 0.00 2.01
2507 2545 0.321122 CTGCACCTGAGGTTGGACTC 60.321 60.000 0.00 0.00 37.99 3.36
2723 2761 2.103263 AGATTTCCGCTACATGGAGACC 59.897 50.000 9.87 0.00 36.72 3.85
2724 2762 1.271856 TTTCCGCTACATGGAGACCA 58.728 50.000 9.87 0.00 36.72 4.02
2752 2790 2.524148 GGCAAAGGTTGGGGCTGT 60.524 61.111 0.00 0.00 0.00 4.40
2783 2821 1.999648 TGGAAGAAGTGCAAATGCCT 58.000 45.000 2.46 0.00 41.18 4.75
2793 2831 7.934457 AGAAGTGCAAATGCCTAGTAATAATG 58.066 34.615 2.46 0.00 41.18 1.90
2953 2991 3.066621 GCATCAAAATGGTCGGAAGCATA 59.933 43.478 0.00 0.00 42.66 3.14
2965 3003 4.446051 GTCGGAAGCATAAGTTATCTGCTC 59.554 45.833 10.64 5.76 45.10 4.26
2966 3004 4.342378 TCGGAAGCATAAGTTATCTGCTCT 59.658 41.667 10.64 3.27 45.10 4.09
3064 3103 9.806448 ATATGATCTATGTAACACTCTGAGACT 57.194 33.333 12.44 0.00 0.00 3.24
3121 3171 3.441222 CAGCATGCAGTTCAATAGGTTCA 59.559 43.478 21.98 0.00 0.00 3.18
3265 3325 5.144692 TCAGACTCATATCCATTGCTAGC 57.855 43.478 8.10 8.10 0.00 3.42
3327 3387 5.948992 ATTTGCTCACTTTGAAGTACTCC 57.051 39.130 0.00 0.00 37.08 3.85
3331 3391 3.617775 GCTCACTTTGAAGTACTCCCTCC 60.618 52.174 0.00 0.00 37.08 4.30
3332 3392 2.561419 TCACTTTGAAGTACTCCCTCCG 59.439 50.000 0.00 0.00 37.08 4.63
3333 3393 2.299297 CACTTTGAAGTACTCCCTCCGT 59.701 50.000 0.00 0.00 37.08 4.69
3334 3394 2.970640 ACTTTGAAGTACTCCCTCCGTT 59.029 45.455 0.00 0.00 37.52 4.44
3336 3396 1.553706 TGAAGTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 0.00 3.62
3337 3397 0.455005 GAAGTACTCCCTCCGTTCCG 59.545 60.000 0.00 0.00 0.00 4.30
3340 3400 0.890683 GTACTCCCTCCGTTCCGAAA 59.109 55.000 0.00 0.00 0.00 3.46
3341 3401 1.479730 GTACTCCCTCCGTTCCGAAAT 59.520 52.381 0.00 0.00 0.00 2.17
3342 3402 0.249398 ACTCCCTCCGTTCCGAAATG 59.751 55.000 0.00 0.00 0.00 2.32
3343 3403 0.249398 CTCCCTCCGTTCCGAAATGT 59.751 55.000 0.00 0.00 0.00 2.71
3344 3404 1.479323 CTCCCTCCGTTCCGAAATGTA 59.521 52.381 0.00 0.00 0.00 2.29
3345 3405 1.901159 TCCCTCCGTTCCGAAATGTAA 59.099 47.619 0.00 0.00 0.00 2.41
3346 3406 2.093869 TCCCTCCGTTCCGAAATGTAAG 60.094 50.000 0.00 0.00 0.00 2.34
3347 3407 2.277084 CCTCCGTTCCGAAATGTAAGG 58.723 52.381 0.00 0.00 0.00 2.69
3348 3408 1.664151 CTCCGTTCCGAAATGTAAGGC 59.336 52.381 0.00 0.00 0.00 4.35
3349 3409 0.372334 CCGTTCCGAAATGTAAGGCG 59.628 55.000 0.00 0.00 0.00 5.52
3350 3410 1.073177 CGTTCCGAAATGTAAGGCGT 58.927 50.000 0.00 0.00 0.00 5.68
3351 3411 1.461897 CGTTCCGAAATGTAAGGCGTT 59.538 47.619 0.00 0.00 0.00 4.84
3352 3412 2.096119 CGTTCCGAAATGTAAGGCGTTT 60.096 45.455 0.00 0.00 38.88 3.60
3423 3490 5.189145 GGGACGGAGGGATTATACATACATT 59.811 44.000 0.00 0.00 0.00 2.71
3471 3538 1.028330 CGCCTGTGCCACATGATCTT 61.028 55.000 4.16 0.00 0.00 2.40
3472 3539 0.737219 GCCTGTGCCACATGATCTTC 59.263 55.000 4.16 0.00 0.00 2.87
3483 3550 3.708631 CACATGATCTTCTGGTACTCCCT 59.291 47.826 0.00 0.00 0.00 4.20
3563 3635 4.378459 GCTCACTTTGTCGTATTTTCCTGG 60.378 45.833 0.00 0.00 0.00 4.45
3596 3668 0.608640 CGCTACTGGTTCCCACTTCT 59.391 55.000 0.00 0.00 0.00 2.85
3605 3677 2.029918 GGTTCCCACTTCTCAACAATGC 60.030 50.000 0.00 0.00 0.00 3.56
3611 3683 2.096069 CACTTCTCAACAATGCTGTCCG 60.096 50.000 0.00 0.00 33.45 4.79
3634 3706 1.685803 CCCCAATTGCTGGTATGCAGA 60.686 52.381 0.00 0.00 44.76 4.26
3647 3719 3.181503 GGTATGCAGAGCACATTCTGTTG 60.182 47.826 5.50 0.00 45.07 3.33
3842 3914 8.442605 TTTGTACAAGTTCGTTTTCAAAGAAG 57.557 30.769 8.56 0.00 0.00 2.85
3856 3928 7.611213 TTTCAAAGAAGAAACTCTCTTTCGT 57.389 32.000 0.00 0.00 44.82 3.85
3902 3975 7.167468 GCTTCGTTTGGTAAAAGCATAATATGG 59.833 37.037 2.13 0.00 42.80 2.74
3915 3988 5.598417 AGCATAATATGGTTTCCAGTTTCCC 59.402 40.000 0.00 0.00 37.84 3.97
3932 4005 0.108138 CCCGTTGGCTCTAACCTCTG 60.108 60.000 0.00 0.00 0.00 3.35
3933 4006 0.895530 CCGTTGGCTCTAACCTCTGA 59.104 55.000 0.00 0.00 0.00 3.27
3934 4007 1.134965 CCGTTGGCTCTAACCTCTGAG 60.135 57.143 0.00 0.00 0.00 3.35
3935 4008 1.134965 CGTTGGCTCTAACCTCTGAGG 60.135 57.143 22.00 22.00 42.49 3.86
3936 4009 1.208293 GTTGGCTCTAACCTCTGAGGG 59.792 57.143 26.56 10.12 40.58 4.30
3937 4010 0.978146 TGGCTCTAACCTCTGAGGGC 60.978 60.000 26.56 18.75 40.58 5.19
3938 4011 0.978146 GGCTCTAACCTCTGAGGGCA 60.978 60.000 26.56 13.11 41.24 5.36
3939 4012 1.127343 GCTCTAACCTCTGAGGGCAT 58.873 55.000 26.56 14.90 40.58 4.40
3940 4013 1.488393 GCTCTAACCTCTGAGGGCATT 59.512 52.381 26.56 14.72 40.58 3.56
3941 4014 2.092699 GCTCTAACCTCTGAGGGCATTT 60.093 50.000 26.56 14.38 40.58 2.32
3942 4015 3.623453 GCTCTAACCTCTGAGGGCATTTT 60.623 47.826 26.56 14.04 40.58 1.82
3943 4016 4.593956 CTCTAACCTCTGAGGGCATTTTT 58.406 43.478 26.56 13.37 40.58 1.94
3944 4017 5.745227 CTCTAACCTCTGAGGGCATTTTTA 58.255 41.667 26.56 13.75 40.58 1.52
3945 4018 6.134535 TCTAACCTCTGAGGGCATTTTTAA 57.865 37.500 26.56 4.99 40.58 1.52
3946 4019 5.944007 TCTAACCTCTGAGGGCATTTTTAAC 59.056 40.000 26.56 0.00 40.58 2.01
3947 4020 3.431415 ACCTCTGAGGGCATTTTTAACC 58.569 45.455 26.56 0.00 40.58 2.85
3948 4021 2.423538 CCTCTGAGGGCATTTTTAACCG 59.576 50.000 16.19 0.00 0.00 4.44
3949 4022 3.343617 CTCTGAGGGCATTTTTAACCGA 58.656 45.455 0.00 0.00 0.00 4.69
3950 4023 3.947834 CTCTGAGGGCATTTTTAACCGAT 59.052 43.478 0.00 0.00 0.00 4.18
3951 4024 3.945285 TCTGAGGGCATTTTTAACCGATC 59.055 43.478 0.00 0.00 0.00 3.69
3952 4025 3.020984 TGAGGGCATTTTTAACCGATCC 58.979 45.455 0.00 0.00 0.00 3.36
3953 4026 2.361119 GAGGGCATTTTTAACCGATCCC 59.639 50.000 0.00 0.00 0.00 3.85
3954 4027 1.411246 GGGCATTTTTAACCGATCCCC 59.589 52.381 0.00 0.00 0.00 4.81
3955 4028 2.384828 GGCATTTTTAACCGATCCCCT 58.615 47.619 0.00 0.00 0.00 4.79
3956 4029 3.558033 GGCATTTTTAACCGATCCCCTA 58.442 45.455 0.00 0.00 0.00 3.53
3957 4030 3.955551 GGCATTTTTAACCGATCCCCTAA 59.044 43.478 0.00 0.00 0.00 2.69
3958 4031 4.403113 GGCATTTTTAACCGATCCCCTAAA 59.597 41.667 0.00 0.00 0.00 1.85
3959 4032 5.105269 GGCATTTTTAACCGATCCCCTAAAA 60.105 40.000 0.00 0.00 0.00 1.52
3960 4033 6.399743 GCATTTTTAACCGATCCCCTAAAAA 58.600 36.000 12.19 12.19 37.52 1.94
3961 4034 6.533723 GCATTTTTAACCGATCCCCTAAAAAG 59.466 38.462 13.95 9.74 36.93 2.27
3962 4035 5.648178 TTTTAACCGATCCCCTAAAAAGC 57.352 39.130 0.00 0.00 0.00 3.51
3963 4036 4.579647 TTAACCGATCCCCTAAAAAGCT 57.420 40.909 0.00 0.00 0.00 3.74
3964 4037 5.697082 TTAACCGATCCCCTAAAAAGCTA 57.303 39.130 0.00 0.00 0.00 3.32
3965 4038 4.790718 AACCGATCCCCTAAAAAGCTAT 57.209 40.909 0.00 0.00 0.00 2.97
3966 4039 5.899631 AACCGATCCCCTAAAAAGCTATA 57.100 39.130 0.00 0.00 0.00 1.31
3967 4040 5.899631 ACCGATCCCCTAAAAAGCTATAA 57.100 39.130 0.00 0.00 0.00 0.98
3968 4041 6.256643 ACCGATCCCCTAAAAAGCTATAAA 57.743 37.500 0.00 0.00 0.00 1.40
3969 4042 6.665695 ACCGATCCCCTAAAAAGCTATAAAA 58.334 36.000 0.00 0.00 0.00 1.52
3970 4043 6.771267 ACCGATCCCCTAAAAAGCTATAAAAG 59.229 38.462 0.00 0.00 0.00 2.27
3971 4044 6.996282 CCGATCCCCTAAAAAGCTATAAAAGA 59.004 38.462 0.00 0.00 0.00 2.52
3972 4045 7.173390 CCGATCCCCTAAAAAGCTATAAAAGAG 59.827 40.741 0.00 0.00 0.00 2.85
3973 4046 7.715686 CGATCCCCTAAAAAGCTATAAAAGAGT 59.284 37.037 0.00 0.00 0.00 3.24
4000 4073 9.908152 AAAAATTCGATTTTACTCCTTTTCGAT 57.092 25.926 5.77 0.00 41.30 3.59
4001 4074 8.895932 AAATTCGATTTTACTCCTTTTCGATG 57.104 30.769 3.54 0.00 35.77 3.84
4002 4075 5.464965 TCGATTTTACTCCTTTTCGATGC 57.535 39.130 0.00 0.00 31.38 3.91
4003 4076 4.932799 TCGATTTTACTCCTTTTCGATGCA 59.067 37.500 0.00 0.00 31.38 3.96
4004 4077 5.022021 CGATTTTACTCCTTTTCGATGCAC 58.978 41.667 0.00 0.00 0.00 4.57
4005 4078 4.759516 TTTTACTCCTTTTCGATGCACC 57.240 40.909 0.00 0.00 0.00 5.01
4006 4079 3.695830 TTACTCCTTTTCGATGCACCT 57.304 42.857 0.00 0.00 0.00 4.00
4007 4080 4.811969 TTACTCCTTTTCGATGCACCTA 57.188 40.909 0.00 0.00 0.00 3.08
4008 4081 3.252974 ACTCCTTTTCGATGCACCTAG 57.747 47.619 0.00 0.00 0.00 3.02
4009 4082 1.936547 CTCCTTTTCGATGCACCTAGC 59.063 52.381 0.00 0.00 45.96 3.42
4010 4083 1.555075 TCCTTTTCGATGCACCTAGCT 59.445 47.619 0.00 0.00 45.94 3.32
4011 4084 1.667724 CCTTTTCGATGCACCTAGCTG 59.332 52.381 0.00 0.00 45.94 4.24
4012 4085 2.621338 CTTTTCGATGCACCTAGCTGA 58.379 47.619 0.00 0.00 45.94 4.26
4013 4086 2.988010 TTTCGATGCACCTAGCTGAT 57.012 45.000 0.00 0.00 45.94 2.90
4014 4087 2.515926 TTCGATGCACCTAGCTGATC 57.484 50.000 0.00 0.00 45.94 2.92
4015 4088 0.676184 TCGATGCACCTAGCTGATCC 59.324 55.000 0.00 0.00 45.94 3.36
4016 4089 0.320247 CGATGCACCTAGCTGATCCC 60.320 60.000 0.00 0.00 45.94 3.85
4017 4090 0.036022 GATGCACCTAGCTGATCCCC 59.964 60.000 0.00 0.00 45.94 4.81
4018 4091 0.401105 ATGCACCTAGCTGATCCCCT 60.401 55.000 0.00 0.00 45.94 4.79
4019 4092 0.264657 TGCACCTAGCTGATCCCCTA 59.735 55.000 0.00 0.00 45.94 3.53
4020 4093 1.132721 TGCACCTAGCTGATCCCCTAT 60.133 52.381 0.00 0.00 45.94 2.57
4021 4094 1.981495 GCACCTAGCTGATCCCCTATT 59.019 52.381 0.00 0.00 41.15 1.73
4022 4095 2.027653 GCACCTAGCTGATCCCCTATTC 60.028 54.545 0.00 0.00 41.15 1.75
4023 4096 3.515562 CACCTAGCTGATCCCCTATTCT 58.484 50.000 0.00 0.00 0.00 2.40
4024 4097 3.260380 CACCTAGCTGATCCCCTATTCTG 59.740 52.174 0.00 0.00 0.00 3.02
4025 4098 2.235898 CCTAGCTGATCCCCTATTCTGC 59.764 54.545 0.00 0.00 37.16 4.26
4026 4099 1.063183 AGCTGATCCCCTATTCTGCC 58.937 55.000 0.00 0.00 37.48 4.85
4027 4100 1.063183 GCTGATCCCCTATTCTGCCT 58.937 55.000 0.00 0.00 32.53 4.75
4028 4101 2.158097 AGCTGATCCCCTATTCTGCCTA 60.158 50.000 0.00 0.00 37.48 3.93
4029 4102 2.235898 GCTGATCCCCTATTCTGCCTAG 59.764 54.545 0.00 0.00 32.53 3.02
4030 4103 3.515562 CTGATCCCCTATTCTGCCTAGT 58.484 50.000 0.00 0.00 0.00 2.57
4031 4104 3.242867 TGATCCCCTATTCTGCCTAGTG 58.757 50.000 0.00 0.00 0.00 2.74
4032 4105 3.116746 TGATCCCCTATTCTGCCTAGTGA 60.117 47.826 0.00 0.00 0.00 3.41
4033 4106 3.414759 TCCCCTATTCTGCCTAGTGAA 57.585 47.619 0.00 0.00 0.00 3.18
4034 4107 3.309296 TCCCCTATTCTGCCTAGTGAAG 58.691 50.000 0.00 0.00 0.00 3.02
4035 4108 3.041946 CCCCTATTCTGCCTAGTGAAGT 58.958 50.000 0.00 0.00 0.00 3.01
4036 4109 4.078805 TCCCCTATTCTGCCTAGTGAAGTA 60.079 45.833 0.00 0.00 0.00 2.24
4037 4110 4.654262 CCCCTATTCTGCCTAGTGAAGTAA 59.346 45.833 0.00 0.00 0.00 2.24
4038 4111 5.130477 CCCCTATTCTGCCTAGTGAAGTAAA 59.870 44.000 0.00 0.00 0.00 2.01
4039 4112 6.352737 CCCCTATTCTGCCTAGTGAAGTAAAA 60.353 42.308 0.00 0.00 0.00 1.52
4040 4113 7.110155 CCCTATTCTGCCTAGTGAAGTAAAAA 58.890 38.462 0.00 0.00 0.00 1.94
4062 4135 8.902540 AAAAATTTACTCCAACTCCCAAAATC 57.097 30.769 0.00 0.00 0.00 2.17
4063 4136 6.605471 AATTTACTCCAACTCCCAAAATCC 57.395 37.500 0.00 0.00 0.00 3.01
4064 4137 2.604912 ACTCCAACTCCCAAAATCCC 57.395 50.000 0.00 0.00 0.00 3.85
4065 4138 1.077169 ACTCCAACTCCCAAAATCCCC 59.923 52.381 0.00 0.00 0.00 4.81
4066 4139 0.411848 TCCAACTCCCAAAATCCCCC 59.588 55.000 0.00 0.00 0.00 5.40
4067 4140 0.413434 CCAACTCCCAAAATCCCCCT 59.587 55.000 0.00 0.00 0.00 4.79
4068 4141 1.643811 CCAACTCCCAAAATCCCCCTA 59.356 52.381 0.00 0.00 0.00 3.53
4069 4142 2.043801 CCAACTCCCAAAATCCCCCTAA 59.956 50.000 0.00 0.00 0.00 2.69
4070 4143 3.096852 CAACTCCCAAAATCCCCCTAAC 58.903 50.000 0.00 0.00 0.00 2.34
4071 4144 1.283905 ACTCCCAAAATCCCCCTAACG 59.716 52.381 0.00 0.00 0.00 3.18
4072 4145 0.626916 TCCCAAAATCCCCCTAACGG 59.373 55.000 0.00 0.00 0.00 4.44
4073 4146 0.333652 CCCAAAATCCCCCTAACGGT 59.666 55.000 0.00 0.00 0.00 4.83
4074 4147 1.470051 CCAAAATCCCCCTAACGGTG 58.530 55.000 0.00 0.00 0.00 4.94
4075 4148 1.004979 CCAAAATCCCCCTAACGGTGA 59.995 52.381 0.00 0.00 0.00 4.02
4076 4149 2.365582 CAAAATCCCCCTAACGGTGAG 58.634 52.381 0.00 0.00 0.00 3.51
4077 4150 1.665137 AAATCCCCCTAACGGTGAGT 58.335 50.000 0.00 0.00 0.00 3.41
4078 4151 0.909623 AATCCCCCTAACGGTGAGTG 59.090 55.000 0.00 0.00 0.00 3.51
4079 4152 0.042131 ATCCCCCTAACGGTGAGTGA 59.958 55.000 0.00 0.00 0.00 3.41
4080 4153 0.901580 TCCCCCTAACGGTGAGTGAC 60.902 60.000 0.00 0.00 0.00 3.67
4081 4154 1.189524 CCCCCTAACGGTGAGTGACA 61.190 60.000 0.00 0.00 0.00 3.58
4082 4155 0.246635 CCCCTAACGGTGAGTGACAG 59.753 60.000 0.00 0.00 0.00 3.51
4083 4156 0.389948 CCCTAACGGTGAGTGACAGC 60.390 60.000 0.00 0.00 42.73 4.40
4084 4157 0.389948 CCTAACGGTGAGTGACAGCC 60.390 60.000 0.00 0.00 43.16 4.85
4085 4158 0.603569 CTAACGGTGAGTGACAGCCT 59.396 55.000 0.00 0.00 43.16 4.58
4086 4159 0.601558 TAACGGTGAGTGACAGCCTC 59.398 55.000 0.00 0.00 43.16 4.70
4087 4160 2.100879 AACGGTGAGTGACAGCCTCC 62.101 60.000 0.00 0.00 43.16 4.30
4088 4161 2.574018 CGGTGAGTGACAGCCTCCA 61.574 63.158 0.00 0.00 43.16 3.86
4089 4162 1.004440 GGTGAGTGACAGCCTCCAC 60.004 63.158 0.00 0.00 40.63 4.02
4090 4163 1.004440 GTGAGTGACAGCCTCCACC 60.004 63.158 0.00 0.00 34.00 4.61
4091 4164 1.459348 TGAGTGACAGCCTCCACCA 60.459 57.895 0.00 0.00 34.00 4.17
4092 4165 0.837691 TGAGTGACAGCCTCCACCAT 60.838 55.000 0.00 0.00 34.00 3.55
4093 4166 0.326264 GAGTGACAGCCTCCACCATT 59.674 55.000 0.00 0.00 34.00 3.16
4094 4167 0.773644 AGTGACAGCCTCCACCATTT 59.226 50.000 0.00 0.00 34.00 2.32
4095 4168 1.168714 GTGACAGCCTCCACCATTTC 58.831 55.000 0.00 0.00 0.00 2.17
4096 4169 0.038166 TGACAGCCTCCACCATTTCC 59.962 55.000 0.00 0.00 0.00 3.13
4097 4170 0.681243 GACAGCCTCCACCATTTCCC 60.681 60.000 0.00 0.00 0.00 3.97
4098 4171 1.142688 ACAGCCTCCACCATTTCCCT 61.143 55.000 0.00 0.00 0.00 4.20
4099 4172 0.394899 CAGCCTCCACCATTTCCCTC 60.395 60.000 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 6.126863 AGGGACACAGATAAATCAACTTCA 57.873 37.500 0.00 0.00 0.00 3.02
89 90 6.258947 GCTAGGGACACAGATAAATCAACTTC 59.741 42.308 0.00 0.00 0.00 3.01
143 144 1.511850 TTCTGTGTTGCATGAGACGG 58.488 50.000 0.00 0.00 0.00 4.79
233 234 2.121963 TTGGGCCCTGAGACCAGT 60.122 61.111 25.70 0.00 38.74 4.00
283 284 0.107703 CTACAAGGCGGGCTTCATGA 60.108 55.000 14.52 0.00 0.00 3.07
299 300 3.515901 ACCTCAAGATGGTGGTCTTCTAC 59.484 47.826 0.00 0.00 36.33 2.59
340 341 2.172505 TGACACAATGCCCTAATCGGAT 59.827 45.455 0.00 0.00 33.16 4.18
361 362 6.719829 ACCTAGGTTTACAAAGCTTGCTAAAT 59.280 34.615 9.21 0.00 43.61 1.40
446 451 7.237055 TGGATGTTGAGATGGATCTATCAAGAT 59.763 37.037 19.91 12.10 45.46 2.40
499 504 6.395426 TCCTTGGATTTGATTGATGTATGC 57.605 37.500 0.00 0.00 0.00 3.14
500 505 6.548622 ACCTCCTTGGATTTGATTGATGTATG 59.451 38.462 0.00 0.00 39.71 2.39
532 537 4.165372 TGGACCCTAATCATGGAGGTAAAC 59.835 45.833 8.01 0.00 0.00 2.01
540 545 4.085733 TGTTGTTTGGACCCTAATCATGG 58.914 43.478 0.00 0.00 0.00 3.66
569 574 6.669154 AGGGGATCACACATGAATTGTTTATT 59.331 34.615 0.00 0.00 38.69 1.40
577 582 4.419282 ACAAAAGGGGATCACACATGAAT 58.581 39.130 0.00 0.00 38.69 2.57
638 643 1.787155 CTCTGACGACACTGAAAACCG 59.213 52.381 0.00 0.00 0.00 4.44
866 879 3.982576 TTTTCTTCGCAAGGGAGAAAC 57.017 42.857 0.00 0.00 43.94 2.78
939 955 3.711814 TGCGGATCGGCAAAGGGA 61.712 61.111 23.98 1.07 40.59 4.20
1410 1426 2.231380 AAAGGCCCGGATCTGTGGT 61.231 57.895 0.73 0.00 0.00 4.16
1494 1510 3.706373 GCCAAGACGGGGAGCAGA 61.706 66.667 0.00 0.00 34.06 4.26
1701 1717 2.775418 TCCCCTAATTCTCCATGAGCA 58.225 47.619 0.00 0.00 0.00 4.26
1769 1800 6.419484 TCGGTAGATCAATCATTACACCAT 57.581 37.500 0.00 0.00 0.00 3.55
1772 1803 5.533482 AGCTCGGTAGATCAATCATTACAC 58.467 41.667 0.00 0.00 0.00 2.90
1786 1817 2.307768 TCCATTACCAGAGCTCGGTAG 58.692 52.381 25.73 19.09 40.08 3.18
1864 1895 1.993956 TGGCAATTACCAACTGCAGT 58.006 45.000 15.25 15.25 36.55 4.40
1877 1908 3.019564 GGTACAGCTTCAGAATGGCAAT 58.980 45.455 0.00 0.00 36.16 3.56
1948 1985 4.277515 TCTCAGCTACAACTGAAGCAAT 57.722 40.909 0.00 0.00 45.72 3.56
1997 2034 4.147321 AGCTTGCATTCTCTCCTTTTCAA 58.853 39.130 0.00 0.00 0.00 2.69
2136 2173 5.888724 TCTTGTGGTGAAGTTGTGGAAATTA 59.111 36.000 0.00 0.00 0.00 1.40
2166 2203 2.909577 GCTGCAGGATCCTCAGCT 59.090 61.111 35.02 10.82 46.93 4.24
2216 2253 1.553248 TCCCATCCAGACTAACAACGG 59.447 52.381 0.00 0.00 0.00 4.44
2253 2290 2.125912 CTCTGCCCGACAACCTCG 60.126 66.667 0.00 0.00 42.54 4.63
2311 2348 3.681034 GCACAGTTCCTCATCACTGCTAT 60.681 47.826 0.00 0.00 43.72 2.97
2507 2545 1.671979 ACATGCATTCATCGAGGTGG 58.328 50.000 0.00 0.00 0.00 4.61
2723 2761 1.004044 ACCTTTGCCTCAGATCCAGTG 59.996 52.381 0.00 0.00 0.00 3.66
2724 2762 1.366319 ACCTTTGCCTCAGATCCAGT 58.634 50.000 0.00 0.00 0.00 4.00
2752 2790 6.946340 TGCACTTCTTCCATATTCTCAACTA 58.054 36.000 0.00 0.00 0.00 2.24
2793 2831 4.909880 CCTTGCAAAAAGTTACTCGCTTAC 59.090 41.667 0.00 0.00 0.00 2.34
2965 3003 9.988815 ACAGATATTGCCTTAAGATAACACTAG 57.011 33.333 3.36 0.00 0.00 2.57
3064 3103 3.481559 TTTTCCAGGGGGCATAATTCA 57.518 42.857 0.00 0.00 0.00 2.57
3265 3325 8.289618 AGTAACAGTAAACACACAGCAATTATG 58.710 33.333 0.00 0.00 0.00 1.90
3332 3392 3.547649 AAACGCCTTACATTTCGGAAC 57.452 42.857 0.00 0.00 0.00 3.62
3333 3393 4.571372 AAAAACGCCTTACATTTCGGAA 57.429 36.364 0.00 0.00 0.00 4.30
3379 3439 9.677567 CCGTCCCAAAATATAAGACATTTTATG 57.322 33.333 0.00 0.00 34.61 1.90
3380 3440 9.635404 TCCGTCCCAAAATATAAGACATTTTAT 57.365 29.630 0.00 0.00 34.61 1.40
3381 3441 9.116067 CTCCGTCCCAAAATATAAGACATTTTA 57.884 33.333 0.00 0.00 34.61 1.52
3382 3442 7.068226 CCTCCGTCCCAAAATATAAGACATTTT 59.932 37.037 0.00 0.00 36.31 1.82
3386 3446 4.141574 CCCTCCGTCCCAAAATATAAGACA 60.142 45.833 0.00 0.00 0.00 3.41
3387 3447 4.102054 TCCCTCCGTCCCAAAATATAAGAC 59.898 45.833 0.00 0.00 0.00 3.01
3389 3449 4.699925 TCCCTCCGTCCCAAAATATAAG 57.300 45.455 0.00 0.00 0.00 1.73
3390 3450 5.656549 AATCCCTCCGTCCCAAAATATAA 57.343 39.130 0.00 0.00 0.00 0.98
3391 3451 6.963117 ATAATCCCTCCGTCCCAAAATATA 57.037 37.500 0.00 0.00 0.00 0.86
3392 3452 5.860648 ATAATCCCTCCGTCCCAAAATAT 57.139 39.130 0.00 0.00 0.00 1.28
3400 3464 5.934402 ATGTATGTATAATCCCTCCGTCC 57.066 43.478 0.00 0.00 0.00 4.79
3435 3502 4.126437 CAGGCGTACATGGATATGAACAA 58.874 43.478 0.00 0.00 37.73 2.83
3440 3507 1.800586 GCACAGGCGTACATGGATATG 59.199 52.381 0.00 0.00 40.24 1.78
3471 3538 2.327325 AAAGCAGAGGGAGTACCAGA 57.673 50.000 0.00 0.00 43.89 3.86
3472 3539 3.100671 ACTAAAGCAGAGGGAGTACCAG 58.899 50.000 0.00 0.00 43.89 4.00
3483 3550 7.246171 AGACCTTTTAGATCACTAAAGCAGA 57.754 36.000 0.00 0.00 45.40 4.26
3519 3591 5.431765 AGCAAATGTATGTACTCCCTCTTG 58.568 41.667 0.00 0.00 0.00 3.02
3520 3592 5.189736 TGAGCAAATGTATGTACTCCCTCTT 59.810 40.000 0.00 0.00 0.00 2.85
3563 3635 3.427773 CCAGTAGCGGAGTTGAACTACTC 60.428 52.174 5.94 0.00 42.56 2.59
3596 3668 0.605319 GGTCCGGACAGCATTGTTGA 60.605 55.000 34.40 0.00 37.76 3.18
3605 3677 2.046285 GCAATTGGGGTCCGGACAG 61.046 63.158 34.40 15.65 0.00 3.51
3634 3706 4.265073 GGATAAGTCCAACAGAATGTGCT 58.735 43.478 0.00 0.00 46.75 4.40
3647 3719 2.926778 ATCAGCAGCAGGATAAGTCC 57.073 50.000 0.00 0.00 45.45 3.85
3717 3789 4.869297 CCAAAGACAGAGAGTAGAGCAATG 59.131 45.833 0.00 0.00 0.00 2.82
3786 3858 9.838339 AGACAGAAGATATAAAAGGTTGGTATG 57.162 33.333 0.00 0.00 0.00 2.39
3818 3890 7.808672 TCTTCTTTGAAAACGAACTTGTACAA 58.191 30.769 8.28 8.28 0.00 2.41
3830 3902 7.963465 ACGAAAGAGAGTTTCTTCTTTGAAAAC 59.037 33.333 4.38 0.00 45.41 2.43
3842 3914 3.473625 TCCCCAAACGAAAGAGAGTTTC 58.526 45.455 0.00 0.00 38.37 2.78
3876 3948 7.167468 CCATATTATGCTTTTACCAAACGAAGC 59.833 37.037 0.00 0.00 43.54 3.86
3877 3949 8.188139 ACCATATTATGCTTTTACCAAACGAAG 58.812 33.333 0.00 0.00 0.00 3.79
3878 3950 8.057536 ACCATATTATGCTTTTACCAAACGAA 57.942 30.769 0.00 0.00 0.00 3.85
3902 3975 0.031585 GCCAACGGGAAACTGGAAAC 59.968 55.000 0.00 0.00 42.76 2.78
3915 3988 1.134965 CCTCAGAGGTTAGAGCCAACG 60.135 57.143 8.54 0.00 0.00 4.10
3932 4005 2.361119 GGGATCGGTTAAAAATGCCCTC 59.639 50.000 0.00 0.00 0.00 4.30
3933 4006 2.384828 GGGATCGGTTAAAAATGCCCT 58.615 47.619 0.00 0.00 0.00 5.19
3934 4007 1.411246 GGGGATCGGTTAAAAATGCCC 59.589 52.381 6.76 6.76 42.81 5.36
3935 4008 2.384828 AGGGGATCGGTTAAAAATGCC 58.615 47.619 0.00 0.00 0.00 4.40
3936 4009 5.585820 TTTAGGGGATCGGTTAAAAATGC 57.414 39.130 0.00 0.00 0.00 3.56
3937 4010 6.533723 GCTTTTTAGGGGATCGGTTAAAAATG 59.466 38.462 14.56 11.57 35.60 2.32
3938 4011 6.439375 AGCTTTTTAGGGGATCGGTTAAAAAT 59.561 34.615 14.56 4.83 35.60 1.82
3939 4012 5.776208 AGCTTTTTAGGGGATCGGTTAAAAA 59.224 36.000 13.94 13.94 35.15 1.94
3940 4013 5.326900 AGCTTTTTAGGGGATCGGTTAAAA 58.673 37.500 0.00 3.98 0.00 1.52
3941 4014 4.925836 AGCTTTTTAGGGGATCGGTTAAA 58.074 39.130 0.00 0.00 0.00 1.52
3942 4015 4.579647 AGCTTTTTAGGGGATCGGTTAA 57.420 40.909 0.00 0.00 0.00 2.01
3943 4016 5.899631 ATAGCTTTTTAGGGGATCGGTTA 57.100 39.130 0.00 0.00 0.00 2.85
3944 4017 4.790718 ATAGCTTTTTAGGGGATCGGTT 57.209 40.909 0.00 0.00 0.00 4.44
3945 4018 5.899631 TTATAGCTTTTTAGGGGATCGGT 57.100 39.130 0.00 0.00 0.00 4.69
3946 4019 6.996282 TCTTTTATAGCTTTTTAGGGGATCGG 59.004 38.462 0.00 0.00 0.00 4.18
3947 4020 7.715686 ACTCTTTTATAGCTTTTTAGGGGATCG 59.284 37.037 0.00 0.00 0.00 3.69
3948 4021 8.982091 ACTCTTTTATAGCTTTTTAGGGGATC 57.018 34.615 0.00 0.00 0.00 3.36
3974 4047 9.908152 ATCGAAAAGGAGTAAAATCGAATTTTT 57.092 25.926 3.37 2.92 41.84 1.94
3975 4048 9.341899 CATCGAAAAGGAGTAAAATCGAATTTT 57.658 29.630 3.37 7.19 41.84 1.82
3976 4049 7.484959 GCATCGAAAAGGAGTAAAATCGAATTT 59.515 33.333 3.59 3.59 41.84 1.82
3977 4050 6.967199 GCATCGAAAAGGAGTAAAATCGAATT 59.033 34.615 0.00 0.00 41.84 2.17
3978 4051 6.093495 TGCATCGAAAAGGAGTAAAATCGAAT 59.907 34.615 0.00 0.00 41.84 3.34
3979 4052 5.410132 TGCATCGAAAAGGAGTAAAATCGAA 59.590 36.000 0.00 0.00 41.84 3.71
3980 4053 4.932799 TGCATCGAAAAGGAGTAAAATCGA 59.067 37.500 0.00 0.00 42.58 3.59
3981 4054 5.022021 GTGCATCGAAAAGGAGTAAAATCG 58.978 41.667 0.00 0.00 0.00 3.34
3982 4055 5.123979 AGGTGCATCGAAAAGGAGTAAAATC 59.876 40.000 0.00 0.00 0.00 2.17
3983 4056 5.010282 AGGTGCATCGAAAAGGAGTAAAAT 58.990 37.500 0.00 0.00 0.00 1.82
3984 4057 4.394729 AGGTGCATCGAAAAGGAGTAAAA 58.605 39.130 0.00 0.00 0.00 1.52
3985 4058 4.015872 AGGTGCATCGAAAAGGAGTAAA 57.984 40.909 0.00 0.00 0.00 2.01
3986 4059 3.695830 AGGTGCATCGAAAAGGAGTAA 57.304 42.857 0.00 0.00 0.00 2.24
3987 4060 3.430374 GCTAGGTGCATCGAAAAGGAGTA 60.430 47.826 0.00 0.00 42.31 2.59
3988 4061 2.678190 GCTAGGTGCATCGAAAAGGAGT 60.678 50.000 0.00 0.00 42.31 3.85
3989 4062 1.936547 GCTAGGTGCATCGAAAAGGAG 59.063 52.381 0.00 0.00 42.31 3.69
3990 4063 1.555075 AGCTAGGTGCATCGAAAAGGA 59.445 47.619 0.00 0.00 45.94 3.36
3991 4064 1.667724 CAGCTAGGTGCATCGAAAAGG 59.332 52.381 9.34 0.00 45.94 3.11
3992 4065 2.621338 TCAGCTAGGTGCATCGAAAAG 58.379 47.619 17.20 0.00 45.94 2.27
3993 4066 2.760634 TCAGCTAGGTGCATCGAAAA 57.239 45.000 17.20 0.00 45.94 2.29
3994 4067 2.483714 GGATCAGCTAGGTGCATCGAAA 60.484 50.000 17.20 0.00 45.94 3.46
3995 4068 1.069204 GGATCAGCTAGGTGCATCGAA 59.931 52.381 17.20 0.00 45.94 3.71
3996 4069 0.676184 GGATCAGCTAGGTGCATCGA 59.324 55.000 17.20 0.00 45.94 3.59
3997 4070 0.320247 GGGATCAGCTAGGTGCATCG 60.320 60.000 17.20 0.00 45.94 3.84
3998 4071 0.036022 GGGGATCAGCTAGGTGCATC 59.964 60.000 17.20 17.90 45.94 3.91
3999 4072 0.401105 AGGGGATCAGCTAGGTGCAT 60.401 55.000 17.20 11.15 45.94 3.96
4000 4073 0.264657 TAGGGGATCAGCTAGGTGCA 59.735 55.000 17.20 6.78 45.94 4.57
4001 4074 1.650528 ATAGGGGATCAGCTAGGTGC 58.349 55.000 17.20 4.08 43.29 5.01
4002 4075 3.260380 CAGAATAGGGGATCAGCTAGGTG 59.740 52.174 15.93 15.93 0.00 4.00
4003 4076 3.515562 CAGAATAGGGGATCAGCTAGGT 58.484 50.000 0.00 0.00 0.00 3.08
4004 4077 2.235898 GCAGAATAGGGGATCAGCTAGG 59.764 54.545 0.00 0.00 0.00 3.02
4005 4078 2.235898 GGCAGAATAGGGGATCAGCTAG 59.764 54.545 0.00 0.00 0.00 3.42
4006 4079 2.158097 AGGCAGAATAGGGGATCAGCTA 60.158 50.000 0.00 0.00 0.00 3.32
4007 4080 1.063183 GGCAGAATAGGGGATCAGCT 58.937 55.000 0.00 0.00 0.00 4.24
4008 4081 1.063183 AGGCAGAATAGGGGATCAGC 58.937 55.000 0.00 0.00 0.00 4.26
4009 4082 3.260380 CACTAGGCAGAATAGGGGATCAG 59.740 52.174 0.00 0.00 0.00 2.90
4010 4083 3.116746 TCACTAGGCAGAATAGGGGATCA 60.117 47.826 0.00 0.00 0.00 2.92
4011 4084 3.511477 TCACTAGGCAGAATAGGGGATC 58.489 50.000 0.00 0.00 0.00 3.36
4012 4085 3.637821 TCACTAGGCAGAATAGGGGAT 57.362 47.619 0.00 0.00 0.00 3.85
4013 4086 3.309296 CTTCACTAGGCAGAATAGGGGA 58.691 50.000 0.00 0.00 0.00 4.81
4014 4087 3.041946 ACTTCACTAGGCAGAATAGGGG 58.958 50.000 0.00 0.00 0.00 4.79
4015 4088 5.871396 TTACTTCACTAGGCAGAATAGGG 57.129 43.478 0.00 0.00 0.00 3.53
4037 4110 7.936847 GGATTTTGGGAGTTGGAGTAAATTTTT 59.063 33.333 0.00 0.00 0.00 1.94
4038 4111 7.450074 GGATTTTGGGAGTTGGAGTAAATTTT 58.550 34.615 0.00 0.00 0.00 1.82
4039 4112 6.013725 GGGATTTTGGGAGTTGGAGTAAATTT 60.014 38.462 0.00 0.00 0.00 1.82
4040 4113 5.483937 GGGATTTTGGGAGTTGGAGTAAATT 59.516 40.000 0.00 0.00 0.00 1.82
4041 4114 5.023452 GGGATTTTGGGAGTTGGAGTAAAT 58.977 41.667 0.00 0.00 0.00 1.40
4042 4115 4.412843 GGGATTTTGGGAGTTGGAGTAAA 58.587 43.478 0.00 0.00 0.00 2.01
4043 4116 3.245479 GGGGATTTTGGGAGTTGGAGTAA 60.245 47.826 0.00 0.00 0.00 2.24
4044 4117 2.310647 GGGGATTTTGGGAGTTGGAGTA 59.689 50.000 0.00 0.00 0.00 2.59
4045 4118 1.077169 GGGGATTTTGGGAGTTGGAGT 59.923 52.381 0.00 0.00 0.00 3.85
4046 4119 1.619704 GGGGGATTTTGGGAGTTGGAG 60.620 57.143 0.00 0.00 0.00 3.86
4047 4120 0.411848 GGGGGATTTTGGGAGTTGGA 59.588 55.000 0.00 0.00 0.00 3.53
4048 4121 0.413434 AGGGGGATTTTGGGAGTTGG 59.587 55.000 0.00 0.00 0.00 3.77
4049 4122 3.096852 GTTAGGGGGATTTTGGGAGTTG 58.903 50.000 0.00 0.00 0.00 3.16
4050 4123 2.291346 CGTTAGGGGGATTTTGGGAGTT 60.291 50.000 0.00 0.00 0.00 3.01
4051 4124 1.283905 CGTTAGGGGGATTTTGGGAGT 59.716 52.381 0.00 0.00 0.00 3.85
4052 4125 1.409661 CCGTTAGGGGGATTTTGGGAG 60.410 57.143 0.00 0.00 0.00 4.30
4053 4126 0.626916 CCGTTAGGGGGATTTTGGGA 59.373 55.000 0.00 0.00 0.00 4.37
4054 4127 0.333652 ACCGTTAGGGGGATTTTGGG 59.666 55.000 0.00 0.00 43.47 4.12
4055 4128 1.004979 TCACCGTTAGGGGGATTTTGG 59.995 52.381 0.00 0.00 45.79 3.28
4056 4129 2.500392 TCACCGTTAGGGGGATTTTG 57.500 50.000 0.00 0.00 45.79 2.44
4062 4135 1.189524 TGTCACTCACCGTTAGGGGG 61.190 60.000 0.00 0.00 42.67 5.40
4063 4136 0.246635 CTGTCACTCACCGTTAGGGG 59.753 60.000 0.00 0.00 44.22 4.79
4064 4137 0.389948 GCTGTCACTCACCGTTAGGG 60.390 60.000 0.00 0.00 43.47 3.53
4065 4138 0.389948 GGCTGTCACTCACCGTTAGG 60.390 60.000 0.00 0.00 45.13 2.69
4066 4139 0.603569 AGGCTGTCACTCACCGTTAG 59.396 55.000 0.00 0.00 0.00 2.34
4067 4140 0.601558 GAGGCTGTCACTCACCGTTA 59.398 55.000 0.00 0.00 35.09 3.18
4068 4141 1.367840 GAGGCTGTCACTCACCGTT 59.632 57.895 0.00 0.00 35.09 4.44
4069 4142 2.574955 GGAGGCTGTCACTCACCGT 61.575 63.158 0.00 0.00 36.70 4.83
4070 4143 2.262915 GGAGGCTGTCACTCACCG 59.737 66.667 0.00 0.00 36.70 4.94
4071 4144 1.004440 GTGGAGGCTGTCACTCACC 60.004 63.158 0.00 0.00 36.70 4.02
4072 4145 1.004440 GGTGGAGGCTGTCACTCAC 60.004 63.158 14.59 4.17 36.70 3.51
4073 4146 0.837691 ATGGTGGAGGCTGTCACTCA 60.838 55.000 14.59 11.78 36.70 3.41
4074 4147 0.326264 AATGGTGGAGGCTGTCACTC 59.674 55.000 14.59 7.79 34.57 3.51
4075 4148 0.773644 AAATGGTGGAGGCTGTCACT 59.226 50.000 14.59 0.00 34.57 3.41
4076 4149 1.168714 GAAATGGTGGAGGCTGTCAC 58.831 55.000 0.00 0.00 0.00 3.67
4077 4150 0.038166 GGAAATGGTGGAGGCTGTCA 59.962 55.000 0.00 0.00 0.00 3.58
4078 4151 0.681243 GGGAAATGGTGGAGGCTGTC 60.681 60.000 0.00 0.00 0.00 3.51
4079 4152 1.142688 AGGGAAATGGTGGAGGCTGT 61.143 55.000 0.00 0.00 0.00 4.40
4080 4153 0.394899 GAGGGAAATGGTGGAGGCTG 60.395 60.000 0.00 0.00 0.00 4.85
4081 4154 2.002625 GAGGGAAATGGTGGAGGCT 58.997 57.895 0.00 0.00 0.00 4.58
4082 4155 4.666105 GAGGGAAATGGTGGAGGC 57.334 61.111 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.