Multiple sequence alignment - TraesCS6D01G233800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G233800 chr6D 100.000 5769 0 0 1 5769 327634655 327640423 0.000000e+00 10654.0
1 TraesCS6D01G233800 chr6A 92.683 1927 104 21 3018 4922 466692477 466694388 0.000000e+00 2743.0
2 TraesCS6D01G233800 chr6A 94.148 1726 56 13 640 2333 466687671 466689383 0.000000e+00 2586.0
3 TraesCS6D01G233800 chr6A 93.980 299 16 2 352 649 466675592 466675889 8.810000e-123 451.0
4 TraesCS6D01G233800 chr6A 89.153 295 19 7 2400 2690 466689682 466689967 7.110000e-94 355.0
5 TraesCS6D01G233800 chr6A 89.474 171 13 2 129 299 466669966 466670131 1.630000e-50 211.0
6 TraesCS6D01G233800 chr6A 91.818 110 7 2 2747 2855 466692380 466692488 1.000000e-32 152.0
7 TraesCS6D01G233800 chr6B 92.113 1661 72 29 1 1655 491619940 491621547 0.000000e+00 2287.0
8 TraesCS6D01G233800 chr6B 93.803 952 49 8 3018 3965 491622848 491623793 0.000000e+00 1423.0
9 TraesCS6D01G233800 chr6B 92.615 1002 47 6 3964 4963 491623875 491624851 0.000000e+00 1415.0
10 TraesCS6D01G233800 chr6B 94.417 806 41 3 4964 5769 491624933 491625734 0.000000e+00 1236.0
11 TraesCS6D01G233800 chr6B 92.689 807 59 0 4963 5769 408690962 408690156 0.000000e+00 1164.0
12 TraesCS6D01G233800 chr6B 93.109 653 39 4 1808 2455 491621796 491622447 0.000000e+00 952.0
13 TraesCS6D01G233800 chr6B 84.577 402 35 14 2457 2855 491622482 491622859 1.960000e-99 374.0
14 TraesCS6D01G233800 chr4A 92.796 819 57 1 4951 5769 255325487 255326303 0.000000e+00 1184.0
15 TraesCS6D01G233800 chr4A 96.875 32 1 0 4762 4793 523449935 523449966 3.000000e-03 54.7
16 TraesCS6D01G233800 chr3B 92.937 807 57 0 4963 5769 215611641 215612447 0.000000e+00 1175.0
17 TraesCS6D01G233800 chr2B 92.813 807 58 0 4963 5769 49097629 49096823 0.000000e+00 1170.0
18 TraesCS6D01G233800 chr7B 92.689 807 59 0 4963 5769 169303109 169302303 0.000000e+00 1164.0
19 TraesCS6D01G233800 chr7B 92.565 807 60 0 4963 5769 245988946 245988140 0.000000e+00 1158.0
20 TraesCS6D01G233800 chr1B 92.565 807 60 0 4963 5769 242241675 242242481 0.000000e+00 1158.0
21 TraesCS6D01G233800 chr1A 92.565 807 60 0 4963 5769 252506656 252507462 0.000000e+00 1158.0
22 TraesCS6D01G233800 chr3A 88.596 114 8 3 2907 3016 10483849 10483961 3.630000e-27 134.0
23 TraesCS6D01G233800 chr5D 89.189 74 7 1 2947 3020 545263108 545263180 2.210000e-14 91.6
24 TraesCS6D01G233800 chr1D 100.000 30 0 0 1523 1552 458160462 458160433 8.080000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G233800 chr6D 327634655 327640423 5768 False 10654.000000 10654 100.000000 1 5769 1 chr6D.!!$F1 5768
1 TraesCS6D01G233800 chr6A 466687671 466694388 6717 False 1459.000000 2743 91.950500 640 4922 4 chr6A.!!$F3 4282
2 TraesCS6D01G233800 chr6B 491619940 491625734 5794 False 1281.166667 2287 91.772333 1 5769 6 chr6B.!!$F1 5768
3 TraesCS6D01G233800 chr6B 408690156 408690962 806 True 1164.000000 1164 92.689000 4963 5769 1 chr6B.!!$R1 806
4 TraesCS6D01G233800 chr4A 255325487 255326303 816 False 1184.000000 1184 92.796000 4951 5769 1 chr4A.!!$F1 818
5 TraesCS6D01G233800 chr3B 215611641 215612447 806 False 1175.000000 1175 92.937000 4963 5769 1 chr3B.!!$F1 806
6 TraesCS6D01G233800 chr2B 49096823 49097629 806 True 1170.000000 1170 92.813000 4963 5769 1 chr2B.!!$R1 806
7 TraesCS6D01G233800 chr7B 169302303 169303109 806 True 1164.000000 1164 92.689000 4963 5769 1 chr7B.!!$R1 806
8 TraesCS6D01G233800 chr7B 245988140 245988946 806 True 1158.000000 1158 92.565000 4963 5769 1 chr7B.!!$R2 806
9 TraesCS6D01G233800 chr1B 242241675 242242481 806 False 1158.000000 1158 92.565000 4963 5769 1 chr1B.!!$F1 806
10 TraesCS6D01G233800 chr1A 252506656 252507462 806 False 1158.000000 1158 92.565000 4963 5769 1 chr1A.!!$F1 806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.108377 AGACACGAATGCATGCGGTA 60.108 50.0 29.98 0.00 0.00 4.02 F
833 840 0.112412 ACCTTGGCGAAAATGGGAGT 59.888 50.0 0.00 0.00 0.00 3.85 F
1845 1983 0.035458 AAAGAAGCTGACTGGTCCCG 59.965 55.0 0.00 0.00 0.00 5.14 F
2717 5512 0.104855 TTAGCAGTGCCAGCTATCCG 59.895 55.0 12.58 0.00 43.48 4.18 F
2721 5516 0.107456 CAGTGCCAGCTATCCGGATT 59.893 55.0 24.71 0.65 0.00 3.01 F
2724 5519 0.249868 TGCCAGCTATCCGGATTTCG 60.250 55.0 24.71 12.65 38.88 3.46 F
4280 7177 0.039527 GTTTTTGCACGGTAGGCCTG 60.040 55.0 17.99 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1251 1262 0.112995 AAGGTCCAGGCAAATGCAGA 59.887 50.000 7.80 0.00 44.36 4.26 R
2112 2250 0.247460 CGTCATGGAAGGAGACAGCA 59.753 55.000 0.00 0.00 32.68 4.41 R
2853 5648 0.035439 ATGAGCAACCGGAATCCGTT 60.035 50.000 21.12 11.80 46.80 4.44 R
3679 6486 1.732732 GCACTGCGTCAGATCTACGTT 60.733 52.381 19.10 7.61 42.26 3.99 R
4110 7005 1.815613 CATCCGTTTGTTATGTGCCCA 59.184 47.619 0.00 0.00 0.00 5.36 R
4576 7479 1.888512 ACACCAGGCTAAACTTGCATG 59.111 47.619 0.00 0.00 41.20 4.06 R
5278 8266 0.040603 GCTGCGAGCTATGGCATTTC 60.041 55.000 4.78 0.69 39.60 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.426261 GAAAAACGCGTCCGCACC 60.426 61.111 14.44 0.00 42.06 5.01
48 49 2.805807 GCCGCAAACCGATACCGAC 61.806 63.158 0.00 0.00 40.02 4.79
62 63 0.601841 ACCGACCCGTGTTGAATGAC 60.602 55.000 0.00 0.00 0.00 3.06
66 67 2.289547 CGACCCGTGTTGAATGACTTTT 59.710 45.455 0.00 0.00 0.00 2.27
67 68 3.495377 CGACCCGTGTTGAATGACTTTTA 59.505 43.478 0.00 0.00 0.00 1.52
85 86 0.108992 TACGGTCCAGACACGAATGC 60.109 55.000 13.24 0.00 0.00 3.56
87 88 0.740868 CGGTCCAGACACGAATGCAT 60.741 55.000 0.00 0.00 0.00 3.96
93 94 0.108377 AGACACGAATGCATGCGGTA 60.108 50.000 29.98 0.00 0.00 4.02
103 104 0.865769 GCATGCGGTATAAAGGGTCG 59.134 55.000 0.00 0.00 0.00 4.79
107 108 1.438814 CGGTATAAAGGGTCGGCGT 59.561 57.895 6.85 0.00 0.00 5.68
108 109 0.595825 CGGTATAAAGGGTCGGCGTC 60.596 60.000 6.85 0.00 0.00 5.19
128 129 3.069729 GTCGGAGATGCCCTAACTGTAAT 59.930 47.826 0.00 0.00 40.67 1.89
129 130 3.069586 TCGGAGATGCCCTAACTGTAATG 59.930 47.826 0.00 0.00 0.00 1.90
130 131 3.181465 CGGAGATGCCCTAACTGTAATGT 60.181 47.826 0.00 0.00 0.00 2.71
131 132 4.038763 CGGAGATGCCCTAACTGTAATGTA 59.961 45.833 0.00 0.00 0.00 2.29
132 133 5.452776 CGGAGATGCCCTAACTGTAATGTAA 60.453 44.000 0.00 0.00 0.00 2.41
133 134 6.354130 GGAGATGCCCTAACTGTAATGTAAA 58.646 40.000 0.00 0.00 0.00 2.01
134 135 6.826741 GGAGATGCCCTAACTGTAATGTAAAA 59.173 38.462 0.00 0.00 0.00 1.52
135 136 7.201705 GGAGATGCCCTAACTGTAATGTAAAAC 60.202 40.741 0.00 0.00 0.00 2.43
136 137 6.602009 AGATGCCCTAACTGTAATGTAAAACC 59.398 38.462 0.00 0.00 0.00 3.27
137 138 5.632118 TGCCCTAACTGTAATGTAAAACCA 58.368 37.500 0.00 0.00 0.00 3.67
138 139 6.069331 TGCCCTAACTGTAATGTAAAACCAA 58.931 36.000 0.00 0.00 0.00 3.67
139 140 6.550108 TGCCCTAACTGTAATGTAAAACCAAA 59.450 34.615 0.00 0.00 0.00 3.28
140 141 7.233757 TGCCCTAACTGTAATGTAAAACCAAAT 59.766 33.333 0.00 0.00 0.00 2.32
141 142 7.544217 GCCCTAACTGTAATGTAAAACCAAATG 59.456 37.037 0.00 0.00 0.00 2.32
142 143 8.032451 CCCTAACTGTAATGTAAAACCAAATGG 58.968 37.037 0.00 0.00 42.17 3.16
143 144 7.544217 CCTAACTGTAATGTAAAACCAAATGGC 59.456 37.037 0.00 0.00 39.32 4.40
147 148 4.551702 AATGTAAAACCAAATGGCCTCC 57.448 40.909 3.32 0.00 39.32 4.30
215 216 9.407380 TGTAATCTTGCTGGTTAATCAATGTAT 57.593 29.630 0.00 0.00 0.00 2.29
217 218 7.886629 ATCTTGCTGGTTAATCAATGTATGT 57.113 32.000 0.00 0.00 0.00 2.29
218 219 8.978874 ATCTTGCTGGTTAATCAATGTATGTA 57.021 30.769 0.00 0.00 0.00 2.29
219 220 8.800370 TCTTGCTGGTTAATCAATGTATGTAA 57.200 30.769 0.00 0.00 0.00 2.41
221 222 7.026631 TGCTGGTTAATCAATGTATGTAAGC 57.973 36.000 0.00 0.00 0.00 3.09
223 224 7.012327 TGCTGGTTAATCAATGTATGTAAGCTC 59.988 37.037 0.00 0.00 0.00 4.09
224 225 7.477144 TGGTTAATCAATGTATGTAAGCTCG 57.523 36.000 0.00 0.00 0.00 5.03
225 226 7.269316 TGGTTAATCAATGTATGTAAGCTCGA 58.731 34.615 0.00 0.00 0.00 4.04
228 229 6.791887 AATCAATGTATGTAAGCTCGATGG 57.208 37.500 0.00 0.00 0.00 3.51
229 230 4.058124 TCAATGTATGTAAGCTCGATGGC 58.942 43.478 0.00 0.00 0.00 4.40
230 231 4.060900 CAATGTATGTAAGCTCGATGGCT 58.939 43.478 0.00 0.00 45.30 4.75
244 245 2.616510 CGATGGCTGAGGAAAAGAACCT 60.617 50.000 0.00 0.00 40.80 3.50
246 247 3.418684 TGGCTGAGGAAAAGAACCTAC 57.581 47.619 0.00 0.00 37.93 3.18
257 258 1.067582 GAACCTACGCCTCATCGGG 59.932 63.158 0.00 0.00 0.00 5.14
264 265 1.102222 ACGCCTCATCGGGTACTCTC 61.102 60.000 0.00 0.00 0.00 3.20
267 268 1.898902 CCTCATCGGGTACTCTCGAT 58.101 55.000 11.42 11.42 45.51 3.59
275 276 1.335142 GGGTACTCTCGATGCGACATC 60.335 57.143 9.06 9.06 0.00 3.06
348 349 3.857052 CGAAGCAAACATCCTAGTACCA 58.143 45.455 0.00 0.00 0.00 3.25
349 350 3.865745 CGAAGCAAACATCCTAGTACCAG 59.134 47.826 0.00 0.00 0.00 4.00
350 351 4.620803 CGAAGCAAACATCCTAGTACCAGT 60.621 45.833 0.00 0.00 0.00 4.00
351 352 4.207891 AGCAAACATCCTAGTACCAGTG 57.792 45.455 0.00 0.00 0.00 3.66
352 353 3.583086 AGCAAACATCCTAGTACCAGTGT 59.417 43.478 0.00 0.00 0.00 3.55
353 354 4.775780 AGCAAACATCCTAGTACCAGTGTA 59.224 41.667 0.00 0.00 0.00 2.90
354 355 4.868734 GCAAACATCCTAGTACCAGTGTAC 59.131 45.833 0.00 0.00 46.36 2.90
399 401 1.659335 CCGTCGTACGTGTGCAACT 60.659 57.895 16.05 0.00 40.58 3.16
400 402 1.481260 CGTCGTACGTGTGCAACTG 59.519 57.895 16.05 0.00 36.74 3.16
442 444 2.898920 AAGTGCGCCCCATGATCAGG 62.899 60.000 4.18 0.00 0.00 3.86
532 534 1.202770 ACCCTTCCAAGAGTTCCAACG 60.203 52.381 0.00 0.00 0.00 4.10
543 545 1.599518 TTCCAACGCCGCAAGTCAT 60.600 52.632 0.00 0.00 0.00 3.06
565 567 1.064166 CCCAAGATCCAATCAGCCACT 60.064 52.381 0.00 0.00 0.00 4.00
690 697 1.527433 CTCTCGCTGTCACCCTGTCA 61.527 60.000 0.00 0.00 0.00 3.58
833 840 0.112412 ACCTTGGCGAAAATGGGAGT 59.888 50.000 0.00 0.00 0.00 3.85
894 901 1.129437 CTAAGCAAGAAAGAGCCACGC 59.871 52.381 0.00 0.00 0.00 5.34
1042 1050 3.899360 CCGGGGTATATACAGGTCTTGAA 59.101 47.826 14.70 0.00 0.00 2.69
1214 1225 1.109920 AGTGCTCCGTCGCCATCTAT 61.110 55.000 0.00 0.00 0.00 1.98
1251 1262 1.078848 GCCGTGAGCAATCTGACCT 60.079 57.895 0.00 0.00 42.97 3.85
1350 1361 0.324830 GGGCTCTGGTAGTGACTCCT 60.325 60.000 0.00 0.00 0.00 3.69
1450 1461 1.371337 TACGTATGCGCCGAGTCTGT 61.371 55.000 11.49 0.65 42.83 3.41
1451 1462 1.516386 CGTATGCGCCGAGTCTGTT 60.516 57.895 4.18 0.00 0.00 3.16
1452 1463 1.472276 CGTATGCGCCGAGTCTGTTC 61.472 60.000 4.18 0.00 0.00 3.18
1453 1464 0.179134 GTATGCGCCGAGTCTGTTCT 60.179 55.000 4.18 0.00 0.00 3.01
1454 1465 0.179137 TATGCGCCGAGTCTGTTCTG 60.179 55.000 4.18 0.00 0.00 3.02
1455 1466 3.482783 GCGCCGAGTCTGTTCTGC 61.483 66.667 0.00 0.00 0.00 4.26
1497 1508 3.098555 CGAGGTTAATGTGCGGCC 58.901 61.111 0.00 0.00 0.00 6.13
1631 1642 2.673523 GAGGGCAGCATCCACTGT 59.326 61.111 0.00 0.00 39.96 3.55
1636 1647 0.035630 GGCAGCATCCACTGTCTCTT 60.036 55.000 0.00 0.00 39.25 2.85
1655 1666 3.496884 TCTTGCTTGCTTACGTGGTAAAG 59.503 43.478 0.00 0.00 0.00 1.85
1688 1725 8.787852 CAGATATATCAGTCTAGTTACTGCACA 58.212 37.037 15.08 0.00 45.34 4.57
1781 1860 8.644318 AAAAGAACGCACGAGAATTATATACT 57.356 30.769 0.00 0.00 0.00 2.12
1841 1979 1.689273 ACGAGAAAGAAGCTGACTGGT 59.311 47.619 0.00 0.00 0.00 4.00
1845 1983 0.035458 AAAGAAGCTGACTGGTCCCG 59.965 55.000 0.00 0.00 0.00 5.14
1854 1992 2.815211 CTGGTCCCGCGTGTCATG 60.815 66.667 4.92 0.00 0.00 3.07
1894 2032 2.564975 CCGCTAGTTCGTGACCGT 59.435 61.111 0.00 0.00 35.01 4.83
2043 2181 2.895424 CGCCACCTCCTCCACCTTT 61.895 63.158 0.00 0.00 0.00 3.11
2091 2229 1.003442 AGCCATCTACCTCAGGGCA 59.997 57.895 0.00 0.00 46.96 5.36
2175 2313 2.283173 TCGTCCTGCTCCTCTGCA 60.283 61.111 0.00 0.00 41.05 4.41
2196 2334 0.528470 CTTCGTCTTCCGCTTCCTCT 59.472 55.000 0.00 0.00 36.19 3.69
2346 2484 7.308830 CCCTTCTGAAAGTAACTGAAAATGGAG 60.309 40.741 0.00 0.00 33.76 3.86
2349 2487 7.279615 TCTGAAAGTAACTGAAAATGGAGTGA 58.720 34.615 0.00 0.00 33.76 3.41
2354 2492 2.991250 ACTGAAAATGGAGTGATCCCG 58.009 47.619 0.00 0.00 0.00 5.14
2355 2493 2.305927 ACTGAAAATGGAGTGATCCCGT 59.694 45.455 0.00 0.00 0.00 5.28
2356 2494 2.679837 CTGAAAATGGAGTGATCCCGTG 59.320 50.000 0.00 0.00 0.00 4.94
2375 2695 1.559149 GCGAAAACTTACCGCCGTGA 61.559 55.000 0.00 0.00 42.77 4.35
2387 2707 1.009903 CGCCGTGATTGTACCAACGA 61.010 55.000 7.91 0.00 0.00 3.85
2402 2772 6.693978 TGTACCAACGATGTTCAGATATTACG 59.306 38.462 0.00 0.00 0.00 3.18
2426 2796 2.163818 TGTCCACGTCAAATCCTCAC 57.836 50.000 0.00 0.00 0.00 3.51
2427 2797 1.414550 TGTCCACGTCAAATCCTCACA 59.585 47.619 0.00 0.00 0.00 3.58
2436 2806 5.171476 CGTCAAATCCTCACACAGAGTAAT 58.829 41.667 0.00 0.00 43.12 1.89
2440 2810 6.667848 TCAAATCCTCACACAGAGTAATCCTA 59.332 38.462 0.00 0.00 43.12 2.94
2447 2817 6.867550 TCACACAGAGTAATCCTACAAGATG 58.132 40.000 0.00 0.00 0.00 2.90
2473 2876 2.323959 CTGCTTCTCAGTTCTCACGAC 58.676 52.381 0.00 0.00 38.02 4.34
2486 2889 6.034363 CAGTTCTCACGACAGAATTATGAGTG 59.966 42.308 19.53 19.53 38.35 3.51
2491 2894 4.091945 CACGACAGAATTATGAGTGGTGTG 59.908 45.833 18.53 9.53 36.41 3.82
2548 2951 1.062525 GTCAACGGCGGCAATGATC 59.937 57.895 13.24 7.20 0.00 2.92
2600 3003 5.395768 GGACTTCAGACTGCATTACTGGTAT 60.396 44.000 12.59 2.23 33.19 2.73
2601 3004 5.665459 ACTTCAGACTGCATTACTGGTATC 58.335 41.667 12.59 0.00 33.19 2.24
2602 3005 5.423610 ACTTCAGACTGCATTACTGGTATCT 59.576 40.000 12.59 0.00 33.19 1.98
2603 3006 6.607600 ACTTCAGACTGCATTACTGGTATCTA 59.392 38.462 12.59 0.00 33.19 1.98
2604 3007 6.641169 TCAGACTGCATTACTGGTATCTAG 57.359 41.667 12.59 0.00 33.19 2.43
2605 3008 6.129874 TCAGACTGCATTACTGGTATCTAGT 58.870 40.000 12.59 0.00 33.19 2.57
2606 3009 7.287810 TCAGACTGCATTACTGGTATCTAGTA 58.712 38.462 12.59 0.00 33.19 1.82
2635 3038 6.911250 TCTTACTGTCTCATGTCCAAGTTA 57.089 37.500 0.00 0.00 0.00 2.24
2642 3045 5.473162 TGTCTCATGTCCAAGTTAACCATTG 59.527 40.000 0.88 1.27 0.00 2.82
2669 3072 7.104043 TGGAATTTGAATTAGCAAGGATCAG 57.896 36.000 0.00 0.00 0.00 2.90
2686 3089 5.602145 AGGATCAGAATTCAGAAGTCCTAGG 59.398 44.000 17.10 0.82 33.32 3.02
2690 3093 6.261435 TCAGAATTCAGAAGTCCTAGGGTTA 58.739 40.000 9.46 0.00 0.00 2.85
2691 3094 6.729100 TCAGAATTCAGAAGTCCTAGGGTTAA 59.271 38.462 9.46 0.00 0.00 2.01
2693 3096 8.049721 CAGAATTCAGAAGTCCTAGGGTTAAAT 58.950 37.037 9.46 2.25 0.00 1.40
2709 5504 6.439058 AGGGTTAAATAAAATTAGCAGTGCCA 59.561 34.615 12.58 0.00 0.00 4.92
2710 5505 6.756542 GGGTTAAATAAAATTAGCAGTGCCAG 59.243 38.462 12.58 0.00 0.00 4.85
2711 5506 6.255670 GGTTAAATAAAATTAGCAGTGCCAGC 59.744 38.462 12.58 0.00 0.00 4.85
2712 5507 5.665916 AAATAAAATTAGCAGTGCCAGCT 57.334 34.783 12.58 0.00 45.77 4.24
2713 5508 6.773976 AAATAAAATTAGCAGTGCCAGCTA 57.226 33.333 12.58 0.00 43.25 3.32
2714 5509 6.966534 AATAAAATTAGCAGTGCCAGCTAT 57.033 33.333 12.58 0.00 43.48 2.97
2715 5510 4.907879 AAAATTAGCAGTGCCAGCTATC 57.092 40.909 12.58 0.00 43.48 2.08
2716 5511 2.557920 ATTAGCAGTGCCAGCTATCC 57.442 50.000 12.58 0.00 43.48 2.59
2717 5512 0.104855 TTAGCAGTGCCAGCTATCCG 59.895 55.000 12.58 0.00 43.48 4.18
2718 5513 1.748329 TAGCAGTGCCAGCTATCCGG 61.748 60.000 12.58 0.00 43.25 5.14
2719 5514 3.094062 GCAGTGCCAGCTATCCGGA 62.094 63.158 6.61 6.61 0.00 5.14
2720 5515 1.750930 CAGTGCCAGCTATCCGGAT 59.249 57.895 22.95 22.95 0.00 4.18
2721 5516 0.107456 CAGTGCCAGCTATCCGGATT 59.893 55.000 24.71 0.65 0.00 3.01
2722 5517 0.839946 AGTGCCAGCTATCCGGATTT 59.160 50.000 24.71 1.54 0.00 2.17
2723 5518 1.202698 AGTGCCAGCTATCCGGATTTC 60.203 52.381 24.71 14.55 0.00 2.17
2724 5519 0.249868 TGCCAGCTATCCGGATTTCG 60.250 55.000 24.71 12.65 38.88 3.46
2734 5529 2.689083 CGGATTTCGGTATGCTGCA 58.311 52.632 4.13 4.13 34.75 4.41
2735 5530 1.229428 CGGATTTCGGTATGCTGCAT 58.771 50.000 20.18 20.18 34.75 3.96
2736 5531 1.069703 CGGATTTCGGTATGCTGCATG 60.070 52.381 24.59 8.68 34.75 4.06
2737 5532 2.221169 GGATTTCGGTATGCTGCATGA 58.779 47.619 24.59 10.97 0.00 3.07
2738 5533 2.225019 GGATTTCGGTATGCTGCATGAG 59.775 50.000 24.59 14.86 0.00 2.90
2739 5534 2.401583 TTTCGGTATGCTGCATGAGT 57.598 45.000 24.59 1.70 0.00 3.41
2740 5535 3.535280 TTTCGGTATGCTGCATGAGTA 57.465 42.857 24.59 1.73 0.00 2.59
2741 5536 3.535280 TTCGGTATGCTGCATGAGTAA 57.465 42.857 24.59 11.00 0.00 2.24
2742 5537 3.097877 TCGGTATGCTGCATGAGTAAG 57.902 47.619 24.59 9.99 0.00 2.34
2743 5538 2.693074 TCGGTATGCTGCATGAGTAAGA 59.307 45.455 24.59 11.93 0.00 2.10
2744 5539 2.797156 CGGTATGCTGCATGAGTAAGAC 59.203 50.000 24.59 12.48 0.00 3.01
2745 5540 3.491619 CGGTATGCTGCATGAGTAAGACT 60.492 47.826 24.59 0.00 0.00 3.24
2810 5605 6.705825 ACACTATTTTGGCAAGAATTTTCACC 59.294 34.615 0.00 0.00 0.00 4.02
2818 5613 4.306600 GCAAGAATTTTCACCAAACGGAT 58.693 39.130 0.00 0.00 0.00 4.18
2820 5615 5.527951 CAAGAATTTTCACCAAACGGATCA 58.472 37.500 0.00 0.00 0.00 2.92
2833 5628 6.155827 CCAAACGGATCACACAATTGTTTAT 58.844 36.000 8.77 2.52 31.66 1.40
2857 5652 7.579589 TTTCTTGATCAAATAATTGCAACGG 57.420 32.000 9.88 0.00 36.45 4.44
2858 5653 6.507958 TCTTGATCAAATAATTGCAACGGA 57.492 33.333 9.88 0.00 36.45 4.69
2859 5654 7.099266 TCTTGATCAAATAATTGCAACGGAT 57.901 32.000 9.88 0.00 36.45 4.18
2860 5655 7.546358 TCTTGATCAAATAATTGCAACGGATT 58.454 30.769 9.88 0.00 36.45 3.01
2861 5656 7.701924 TCTTGATCAAATAATTGCAACGGATTC 59.298 33.333 9.88 0.00 36.45 2.52
2862 5657 6.272318 TGATCAAATAATTGCAACGGATTCC 58.728 36.000 0.00 0.00 36.45 3.01
2863 5658 4.667262 TCAAATAATTGCAACGGATTCCG 58.333 39.130 23.21 23.21 43.64 4.30
2864 5659 4.439426 TCAAATAATTGCAACGGATTCCGG 60.439 41.667 27.62 12.91 42.94 5.14
2865 5660 6.837036 TCAAATAATTGCAACGGATTCCGGT 61.837 40.000 27.62 20.42 42.94 5.28
2866 5661 8.237204 TCAAATAATTGCAACGGATTCCGGTT 62.237 38.462 27.62 16.45 42.94 4.44
2872 5667 4.540153 CGGATTCCGGTTGCTCAT 57.460 55.556 17.53 0.00 44.15 2.90
2873 5668 3.678921 CGGATTCCGGTTGCTCATA 57.321 52.632 17.53 0.00 44.15 2.15
2874 5669 1.502231 CGGATTCCGGTTGCTCATAG 58.498 55.000 17.53 0.00 44.15 2.23
2875 5670 1.202533 CGGATTCCGGTTGCTCATAGT 60.203 52.381 17.53 0.00 44.15 2.12
2876 5671 2.484889 GGATTCCGGTTGCTCATAGTC 58.515 52.381 0.00 0.00 0.00 2.59
2877 5672 2.103263 GGATTCCGGTTGCTCATAGTCT 59.897 50.000 0.00 0.00 0.00 3.24
2878 5673 3.432326 GGATTCCGGTTGCTCATAGTCTT 60.432 47.826 0.00 0.00 0.00 3.01
2879 5674 2.672961 TCCGGTTGCTCATAGTCTTG 57.327 50.000 0.00 0.00 0.00 3.02
2880 5675 1.009829 CCGGTTGCTCATAGTCTTGC 58.990 55.000 0.00 0.00 0.00 4.01
2881 5676 1.406069 CCGGTTGCTCATAGTCTTGCT 60.406 52.381 0.00 0.00 0.00 3.91
2882 5677 1.929836 CGGTTGCTCATAGTCTTGCTC 59.070 52.381 0.00 0.00 0.00 4.26
2883 5678 2.675032 CGGTTGCTCATAGTCTTGCTCA 60.675 50.000 0.00 0.00 0.00 4.26
2884 5679 2.935201 GGTTGCTCATAGTCTTGCTCAG 59.065 50.000 0.00 0.00 0.00 3.35
2885 5680 3.594134 GTTGCTCATAGTCTTGCTCAGT 58.406 45.455 0.00 0.00 0.00 3.41
2886 5681 3.969287 TGCTCATAGTCTTGCTCAGTT 57.031 42.857 0.00 0.00 0.00 3.16
2887 5682 3.593096 TGCTCATAGTCTTGCTCAGTTG 58.407 45.455 0.00 0.00 0.00 3.16
2888 5683 2.935201 GCTCATAGTCTTGCTCAGTTGG 59.065 50.000 0.00 0.00 0.00 3.77
2889 5684 3.529533 CTCATAGTCTTGCTCAGTTGGG 58.470 50.000 0.00 0.00 0.00 4.12
2890 5685 2.906389 TCATAGTCTTGCTCAGTTGGGT 59.094 45.455 0.00 0.00 0.00 4.51
2891 5686 3.055819 TCATAGTCTTGCTCAGTTGGGTC 60.056 47.826 0.00 0.00 0.00 4.46
2892 5687 1.131638 AGTCTTGCTCAGTTGGGTCA 58.868 50.000 0.00 0.00 0.00 4.02
2893 5688 1.701847 AGTCTTGCTCAGTTGGGTCAT 59.298 47.619 0.00 0.00 0.00 3.06
2894 5689 2.906389 AGTCTTGCTCAGTTGGGTCATA 59.094 45.455 0.00 0.00 0.00 2.15
2895 5690 3.327757 AGTCTTGCTCAGTTGGGTCATAA 59.672 43.478 0.00 0.00 0.00 1.90
2896 5691 3.437049 GTCTTGCTCAGTTGGGTCATAAC 59.563 47.826 0.00 0.00 0.00 1.89
2897 5692 3.072330 TCTTGCTCAGTTGGGTCATAACA 59.928 43.478 0.00 0.00 0.00 2.41
2898 5693 3.500448 TGCTCAGTTGGGTCATAACAA 57.500 42.857 0.00 0.00 0.00 2.83
2899 5694 4.032960 TGCTCAGTTGGGTCATAACAAT 57.967 40.909 0.00 0.00 0.00 2.71
2900 5695 5.172687 TGCTCAGTTGGGTCATAACAATA 57.827 39.130 0.00 0.00 0.00 1.90
2901 5696 4.941263 TGCTCAGTTGGGTCATAACAATAC 59.059 41.667 0.00 0.00 0.00 1.89
2902 5697 5.186198 GCTCAGTTGGGTCATAACAATACT 58.814 41.667 0.00 0.00 0.00 2.12
2903 5698 5.294552 GCTCAGTTGGGTCATAACAATACTC 59.705 44.000 0.00 0.00 0.00 2.59
2904 5699 5.416083 TCAGTTGGGTCATAACAATACTCG 58.584 41.667 0.00 0.00 0.00 4.18
2905 5700 5.046878 TCAGTTGGGTCATAACAATACTCGT 60.047 40.000 0.00 0.00 0.00 4.18
2906 5701 6.153170 TCAGTTGGGTCATAACAATACTCGTA 59.847 38.462 0.00 0.00 0.00 3.43
2907 5702 6.255020 CAGTTGGGTCATAACAATACTCGTAC 59.745 42.308 0.00 0.00 0.00 3.67
2908 5703 5.918426 TGGGTCATAACAATACTCGTACA 57.082 39.130 0.00 0.00 0.00 2.90
2909 5704 5.898174 TGGGTCATAACAATACTCGTACAG 58.102 41.667 0.00 0.00 0.00 2.74
2910 5705 5.419788 TGGGTCATAACAATACTCGTACAGT 59.580 40.000 0.00 0.00 39.41 3.55
2911 5706 5.975939 GGGTCATAACAATACTCGTACAGTC 59.024 44.000 0.00 0.00 36.43 3.51
2912 5707 5.680229 GGTCATAACAATACTCGTACAGTCG 59.320 44.000 0.00 0.00 36.43 4.18
2913 5708 6.253746 GTCATAACAATACTCGTACAGTCGT 58.746 40.000 0.00 0.00 36.43 4.34
2914 5709 7.401860 GTCATAACAATACTCGTACAGTCGTA 58.598 38.462 0.00 0.00 36.43 3.43
2915 5710 7.371875 GTCATAACAATACTCGTACAGTCGTAC 59.628 40.741 0.00 0.00 43.91 3.67
2916 5711 5.869753 AACAATACTCGTACAGTCGTACT 57.130 39.130 0.00 0.00 44.97 2.73
2926 5721 0.512952 CAGTCGTACTGCTGTTTGGC 59.487 55.000 0.09 0.00 39.62 4.52
2927 5722 0.393077 AGTCGTACTGCTGTTTGGCT 59.607 50.000 0.09 0.00 0.00 4.75
2928 5723 0.512952 GTCGTACTGCTGTTTGGCTG 59.487 55.000 0.09 0.00 37.23 4.85
2929 5724 0.391228 TCGTACTGCTGTTTGGCTGA 59.609 50.000 0.09 0.00 35.59 4.26
2930 5725 0.792640 CGTACTGCTGTTTGGCTGAG 59.207 55.000 0.09 0.00 35.59 3.35
2931 5726 1.160137 GTACTGCTGTTTGGCTGAGG 58.840 55.000 0.09 0.00 35.59 3.86
2932 5727 0.764890 TACTGCTGTTTGGCTGAGGT 59.235 50.000 0.09 0.00 35.59 3.85
2933 5728 0.536006 ACTGCTGTTTGGCTGAGGTC 60.536 55.000 0.00 0.00 35.59 3.85
2934 5729 0.250640 CTGCTGTTTGGCTGAGGTCT 60.251 55.000 0.00 0.00 33.89 3.85
2935 5730 0.535780 TGCTGTTTGGCTGAGGTCTG 60.536 55.000 0.00 0.00 0.00 3.51
2936 5731 0.536006 GCTGTTTGGCTGAGGTCTGT 60.536 55.000 0.00 0.00 0.00 3.41
2937 5732 1.972872 CTGTTTGGCTGAGGTCTGTT 58.027 50.000 0.00 0.00 0.00 3.16
2938 5733 1.876156 CTGTTTGGCTGAGGTCTGTTC 59.124 52.381 0.00 0.00 0.00 3.18
2939 5734 1.239347 GTTTGGCTGAGGTCTGTTCC 58.761 55.000 0.00 0.00 0.00 3.62
2940 5735 1.140312 TTTGGCTGAGGTCTGTTCCT 58.860 50.000 0.00 0.00 40.97 3.36
2951 5746 5.574970 AGGTCTGTTCCTCAAGAAATTCT 57.425 39.130 0.00 0.00 35.85 2.40
2952 5747 6.688073 AGGTCTGTTCCTCAAGAAATTCTA 57.312 37.500 0.00 0.00 35.85 2.10
2953 5748 7.264294 AGGTCTGTTCCTCAAGAAATTCTAT 57.736 36.000 0.00 0.00 35.85 1.98
2954 5749 7.694093 AGGTCTGTTCCTCAAGAAATTCTATT 58.306 34.615 0.00 0.00 35.85 1.73
2955 5750 7.609532 AGGTCTGTTCCTCAAGAAATTCTATTG 59.390 37.037 0.00 0.00 35.85 1.90
2956 5751 7.247019 GTCTGTTCCTCAAGAAATTCTATTGC 58.753 38.462 0.00 0.00 35.85 3.56
2957 5752 7.120432 GTCTGTTCCTCAAGAAATTCTATTGCT 59.880 37.037 0.00 0.00 35.85 3.91
2958 5753 7.120285 TCTGTTCCTCAAGAAATTCTATTGCTG 59.880 37.037 0.00 0.00 35.85 4.41
2959 5754 6.716628 TGTTCCTCAAGAAATTCTATTGCTGT 59.283 34.615 0.00 0.00 35.85 4.40
2960 5755 7.882791 TGTTCCTCAAGAAATTCTATTGCTGTA 59.117 33.333 0.00 0.00 35.85 2.74
2961 5756 8.897752 GTTCCTCAAGAAATTCTATTGCTGTAT 58.102 33.333 0.00 0.00 35.85 2.29
2962 5757 8.668510 TCCTCAAGAAATTCTATTGCTGTATC 57.331 34.615 0.00 0.00 0.00 2.24
2963 5758 8.267183 TCCTCAAGAAATTCTATTGCTGTATCA 58.733 33.333 0.00 0.00 0.00 2.15
2964 5759 8.557864 CCTCAAGAAATTCTATTGCTGTATCAG 58.442 37.037 0.00 0.00 34.12 2.90
2965 5760 9.322773 CTCAAGAAATTCTATTGCTGTATCAGA 57.677 33.333 0.00 0.00 32.44 3.27
2966 5761 9.671279 TCAAGAAATTCTATTGCTGTATCAGAA 57.329 29.630 0.00 0.00 32.44 3.02
2967 5762 9.713740 CAAGAAATTCTATTGCTGTATCAGAAC 57.286 33.333 0.00 0.00 32.44 3.01
2968 5763 8.136057 AGAAATTCTATTGCTGTATCAGAACG 57.864 34.615 0.00 0.00 32.44 3.95
2969 5764 7.981789 AGAAATTCTATTGCTGTATCAGAACGA 59.018 33.333 0.00 0.00 32.44 3.85
2970 5765 8.668510 AAATTCTATTGCTGTATCAGAACGAT 57.331 30.769 0.66 0.00 38.21 3.73
2971 5766 8.668510 AATTCTATTGCTGTATCAGAACGATT 57.331 30.769 0.66 0.00 35.39 3.34
2972 5767 7.468922 TTCTATTGCTGTATCAGAACGATTG 57.531 36.000 0.66 0.00 35.39 2.67
2973 5768 6.573434 TCTATTGCTGTATCAGAACGATTGT 58.427 36.000 0.66 0.00 35.39 2.71
2974 5769 7.712797 TCTATTGCTGTATCAGAACGATTGTA 58.287 34.615 0.66 0.00 35.39 2.41
2975 5770 8.194769 TCTATTGCTGTATCAGAACGATTGTAA 58.805 33.333 0.66 0.00 35.39 2.41
2976 5771 7.792374 ATTGCTGTATCAGAACGATTGTAAT 57.208 32.000 0.66 0.00 35.39 1.89
2977 5772 6.828502 TGCTGTATCAGAACGATTGTAATC 57.171 37.500 0.66 0.00 35.39 1.75
2978 5773 5.753438 TGCTGTATCAGAACGATTGTAATCC 59.247 40.000 0.66 0.00 35.39 3.01
2979 5774 5.177696 GCTGTATCAGAACGATTGTAATCCC 59.822 44.000 0.66 0.00 35.39 3.85
2980 5775 5.607477 TGTATCAGAACGATTGTAATCCCC 58.393 41.667 0.00 0.00 35.39 4.81
2981 5776 4.771114 ATCAGAACGATTGTAATCCCCA 57.229 40.909 0.00 0.00 31.68 4.96
2982 5777 4.771114 TCAGAACGATTGTAATCCCCAT 57.229 40.909 0.00 0.00 31.68 4.00
2983 5778 4.450976 TCAGAACGATTGTAATCCCCATG 58.549 43.478 0.00 0.00 31.68 3.66
2984 5779 3.565482 CAGAACGATTGTAATCCCCATGG 59.435 47.826 4.14 4.14 31.68 3.66
2985 5780 3.202151 AGAACGATTGTAATCCCCATGGT 59.798 43.478 11.73 0.00 31.68 3.55
2986 5781 3.662759 ACGATTGTAATCCCCATGGTT 57.337 42.857 11.73 0.66 31.68 3.67
2987 5782 4.781775 ACGATTGTAATCCCCATGGTTA 57.218 40.909 11.73 0.00 31.68 2.85
2988 5783 5.118729 ACGATTGTAATCCCCATGGTTAA 57.881 39.130 11.73 0.00 31.68 2.01
2989 5784 5.130350 ACGATTGTAATCCCCATGGTTAAG 58.870 41.667 11.73 0.00 31.68 1.85
2990 5785 4.023193 CGATTGTAATCCCCATGGTTAAGC 60.023 45.833 11.73 0.00 31.68 3.09
2991 5786 4.323569 TTGTAATCCCCATGGTTAAGCA 57.676 40.909 11.73 10.22 0.00 3.91
2992 5787 4.323569 TGTAATCCCCATGGTTAAGCAA 57.676 40.909 12.00 0.00 0.00 3.91
2993 5788 4.877773 TGTAATCCCCATGGTTAAGCAAT 58.122 39.130 12.00 0.00 0.00 3.56
2994 5789 4.648762 TGTAATCCCCATGGTTAAGCAATG 59.351 41.667 12.00 10.12 0.00 2.82
2995 5790 3.686227 ATCCCCATGGTTAAGCAATGA 57.314 42.857 12.00 6.37 29.81 2.57
2996 5791 3.464720 TCCCCATGGTTAAGCAATGAA 57.535 42.857 12.00 0.00 29.81 2.57
2997 5792 3.992999 TCCCCATGGTTAAGCAATGAAT 58.007 40.909 12.00 0.00 29.81 2.57
2998 5793 4.360889 TCCCCATGGTTAAGCAATGAATT 58.639 39.130 12.00 0.00 29.81 2.17
2999 5794 4.782156 TCCCCATGGTTAAGCAATGAATTT 59.218 37.500 12.00 0.00 29.81 1.82
3000 5795 5.104982 TCCCCATGGTTAAGCAATGAATTTC 60.105 40.000 12.00 0.00 29.81 2.17
3001 5796 5.104817 CCCCATGGTTAAGCAATGAATTTCT 60.105 40.000 12.00 0.00 29.81 2.52
3002 5797 6.408869 CCCATGGTTAAGCAATGAATTTCTT 58.591 36.000 12.00 0.00 29.81 2.52
3003 5798 6.880529 CCCATGGTTAAGCAATGAATTTCTTT 59.119 34.615 12.00 0.00 29.81 2.52
3004 5799 7.391275 CCCATGGTTAAGCAATGAATTTCTTTT 59.609 33.333 12.00 0.00 29.81 2.27
3005 5800 8.785946 CCATGGTTAAGCAATGAATTTCTTTTT 58.214 29.630 12.00 0.00 29.81 1.94
3006 5801 9.815936 CATGGTTAAGCAATGAATTTCTTTTTC 57.184 29.630 12.00 0.00 29.81 2.29
3007 5802 8.376889 TGGTTAAGCAATGAATTTCTTTTTCC 57.623 30.769 4.54 0.00 0.00 3.13
3008 5803 7.443879 TGGTTAAGCAATGAATTTCTTTTTCCC 59.556 33.333 4.54 0.00 0.00 3.97
3009 5804 7.360017 GGTTAAGCAATGAATTTCTTTTTCCCG 60.360 37.037 0.00 0.00 0.00 5.14
3010 5805 3.996363 AGCAATGAATTTCTTTTTCCCGC 59.004 39.130 0.00 0.00 0.00 6.13
3011 5806 3.745458 GCAATGAATTTCTTTTTCCCGCA 59.255 39.130 0.00 0.00 0.00 5.69
3012 5807 4.213059 GCAATGAATTTCTTTTTCCCGCAA 59.787 37.500 0.00 0.00 0.00 4.85
3013 5808 5.277731 GCAATGAATTTCTTTTTCCCGCAAA 60.278 36.000 0.00 0.00 0.00 3.68
3014 5809 6.723282 CAATGAATTTCTTTTTCCCGCAAAA 58.277 32.000 0.00 0.00 31.73 2.44
3015 5810 6.934048 ATGAATTTCTTTTTCCCGCAAAAA 57.066 29.167 0.00 3.94 40.93 1.94
3016 5811 6.934048 TGAATTTCTTTTTCCCGCAAAAAT 57.066 29.167 0.00 0.00 42.02 1.82
3029 5824 7.066374 TCCCGCAAAAATAAATAATTGCAAC 57.934 32.000 0.00 0.00 46.40 4.17
3087 5882 5.047943 ACACTAGTACTACCTGAAAGCACAG 60.048 44.000 0.00 0.00 37.61 3.66
3092 5887 3.131396 ACTACCTGAAAGCACAGTTTCG 58.869 45.455 0.00 0.00 38.99 3.46
3095 5890 0.662619 CTGAAAGCACAGTTTCGCCA 59.337 50.000 0.00 0.00 38.99 5.69
3149 5946 3.762407 TTGCAGTACTACCTGAAAGCA 57.238 42.857 0.00 0.00 34.23 3.91
3254 6051 1.070134 TCGTAACTGCAGACCAGCTTT 59.930 47.619 23.35 4.57 45.78 3.51
3282 6087 5.393461 GCCTTGAATTTCTACCCATGTCAAG 60.393 44.000 8.99 8.99 39.96 3.02
3285 6090 2.507407 TTTCTACCCATGTCAAGGCC 57.493 50.000 0.00 0.00 0.00 5.19
3286 6091 0.251916 TTCTACCCATGTCAAGGCCG 59.748 55.000 0.00 0.00 0.00 6.13
3287 6092 0.907704 TCTACCCATGTCAAGGCCGT 60.908 55.000 0.00 0.00 0.00 5.68
3299 6104 1.069227 CAAGGCCGTGTAGCTGTTTTC 60.069 52.381 10.93 0.00 0.00 2.29
3303 6108 1.892209 CCGTGTAGCTGTTTTCCCTT 58.108 50.000 0.00 0.00 0.00 3.95
3304 6109 2.872842 GCCGTGTAGCTGTTTTCCCTTA 60.873 50.000 0.00 0.00 0.00 2.69
3309 6114 5.684184 CGTGTAGCTGTTTTCCCTTAAAAAC 59.316 40.000 0.00 5.51 45.25 2.43
3375 6182 8.925700 CATTTTACCTTTTATTTGACTTCCTGC 58.074 33.333 0.00 0.00 0.00 4.85
3421 6228 3.181488 TGCCAATATTTGCTCCAATCGTG 60.181 43.478 12.29 0.00 0.00 4.35
3477 6284 3.118629 GGAGGATGCACTCATGTAACAGA 60.119 47.826 6.66 0.00 39.27 3.41
3524 6331 5.411669 ACTTGCTGAAGTTTTTAGGATACCG 59.588 40.000 0.00 0.00 39.56 4.02
3536 6343 1.208535 AGGATACCGCGGTTTTGATCA 59.791 47.619 38.94 17.74 37.17 2.92
3678 6485 4.549458 GACACAGCAGCAACAATAACATT 58.451 39.130 0.00 0.00 0.00 2.71
3679 6486 5.616645 CGACACAGCAGCAACAATAACATTA 60.617 40.000 0.00 0.00 0.00 1.90
3691 6498 8.600625 GCAACAATAACATTAACGTAGATCTGA 58.399 33.333 5.18 0.00 0.00 3.27
3715 6522 6.049149 ACGCAGTGCAATAGTGTATTTCTAT 58.951 36.000 16.83 0.00 42.51 1.98
3843 6654 2.616842 TCACCTTTTCGCTTTCACTTCC 59.383 45.455 0.00 0.00 0.00 3.46
3844 6655 2.618709 CACCTTTTCGCTTTCACTTCCT 59.381 45.455 0.00 0.00 0.00 3.36
3845 6656 3.066760 CACCTTTTCGCTTTCACTTCCTT 59.933 43.478 0.00 0.00 0.00 3.36
3846 6657 3.315470 ACCTTTTCGCTTTCACTTCCTTC 59.685 43.478 0.00 0.00 0.00 3.46
3848 6659 2.631160 TTCGCTTTCACTTCCTTCCA 57.369 45.000 0.00 0.00 0.00 3.53
3856 6667 6.283694 GCTTTCACTTCCTTCCAAGAAATTT 58.716 36.000 0.00 0.00 0.00 1.82
3961 6773 6.425114 ACTTACTAGTTGCTGATGTTTGTCTG 59.575 38.462 0.00 0.00 0.00 3.51
3984 6879 8.836268 CTGTTATTACCCAACAGTTTACACTA 57.164 34.615 6.99 0.00 45.06 2.74
4020 6915 6.322456 TCATCAAAACTATTGTTTGGTGTCCA 59.678 34.615 6.04 0.00 44.70 4.02
4042 6937 0.332632 TCCAGGGAATTGCTCAAGGG 59.667 55.000 0.00 0.00 0.00 3.95
4051 6946 4.452455 GGAATTGCTCAAGGGTGTATATCG 59.548 45.833 0.00 0.00 0.00 2.92
4087 6982 2.224378 TGCCAGCATATTAGCTCCACTC 60.224 50.000 0.00 0.00 44.54 3.51
4088 6983 2.224378 GCCAGCATATTAGCTCCACTCA 60.224 50.000 0.00 0.00 44.54 3.41
4093 6988 5.638657 CAGCATATTAGCTCCACTCATCTTC 59.361 44.000 0.00 0.00 44.54 2.87
4110 7005 3.791320 TCTTCACTCCCTTGACAGGTAT 58.209 45.455 0.00 0.00 38.79 2.73
4114 7009 0.181350 CTCCCTTGACAGGTATGGGC 59.819 60.000 0.00 0.00 38.79 5.36
4121 7016 3.275617 TGACAGGTATGGGCACATAAC 57.724 47.619 16.63 16.63 45.66 1.89
4153 7049 4.929211 GCAAGTTTTGTCAGTCTTGGTTTT 59.071 37.500 12.34 0.00 38.06 2.43
4169 7065 4.926860 GGTTTTCCAAATGCTATGCAAC 57.073 40.909 0.00 0.00 40.25 4.17
4268 7165 3.120234 GCATTATGGTTGCTGGTTTTTGC 60.120 43.478 0.00 0.00 37.14 3.68
4280 7177 0.039527 GTTTTTGCACGGTAGGCCTG 60.040 55.000 17.99 0.00 0.00 4.85
4282 7179 4.715523 TTGCACGGTAGGCCTGCC 62.716 66.667 28.90 28.90 37.79 4.85
4312 7209 9.528018 GAACACCTTTCTGAATTTTGTTCAATA 57.472 29.630 21.48 0.00 40.58 1.90
4314 7211 8.474025 ACACCTTTCTGAATTTTGTTCAATACA 58.526 29.630 0.00 0.00 34.12 2.29
4368 7266 2.454055 GTGAGTTTTTGTGCAGCTCAC 58.546 47.619 7.15 7.15 45.70 3.51
4456 7354 0.809385 AGCATGAGCAAGCATGACAC 59.191 50.000 15.58 1.86 46.64 3.67
4570 7473 1.742761 CTGCAGATGTCGAATTGGGT 58.257 50.000 8.42 0.00 0.00 4.51
4572 7475 2.868583 CTGCAGATGTCGAATTGGGTAG 59.131 50.000 8.42 0.00 0.00 3.18
4573 7476 2.236146 TGCAGATGTCGAATTGGGTAGT 59.764 45.455 0.00 0.00 0.00 2.73
4574 7477 2.609459 GCAGATGTCGAATTGGGTAGTG 59.391 50.000 0.00 0.00 0.00 2.74
4575 7478 3.861840 CAGATGTCGAATTGGGTAGTGT 58.138 45.455 0.00 0.00 0.00 3.55
4576 7479 3.865745 CAGATGTCGAATTGGGTAGTGTC 59.134 47.826 0.00 0.00 0.00 3.67
4577 7480 3.513912 AGATGTCGAATTGGGTAGTGTCA 59.486 43.478 0.00 0.00 0.00 3.58
4578 7481 3.973206 TGTCGAATTGGGTAGTGTCAT 57.027 42.857 0.00 0.00 0.00 3.06
4579 7482 3.595173 TGTCGAATTGGGTAGTGTCATG 58.405 45.455 0.00 0.00 0.00 3.07
4580 7483 2.351726 GTCGAATTGGGTAGTGTCATGC 59.648 50.000 0.00 0.00 0.00 4.06
4581 7484 2.027653 TCGAATTGGGTAGTGTCATGCA 60.028 45.455 0.00 0.00 0.00 3.96
4582 7485 2.746904 CGAATTGGGTAGTGTCATGCAA 59.253 45.455 0.00 0.00 0.00 4.08
4583 7486 3.181507 CGAATTGGGTAGTGTCATGCAAG 60.182 47.826 0.00 0.00 0.00 4.01
4584 7487 2.949177 TTGGGTAGTGTCATGCAAGT 57.051 45.000 0.00 0.00 0.00 3.16
4585 7488 2.949177 TGGGTAGTGTCATGCAAGTT 57.051 45.000 0.00 0.00 0.00 2.66
4586 7489 3.222173 TGGGTAGTGTCATGCAAGTTT 57.778 42.857 0.00 0.00 0.00 2.66
4587 7490 4.359434 TGGGTAGTGTCATGCAAGTTTA 57.641 40.909 0.00 0.00 0.00 2.01
4588 7491 4.323417 TGGGTAGTGTCATGCAAGTTTAG 58.677 43.478 0.00 0.00 0.00 1.85
4590 7493 3.127030 GGTAGTGTCATGCAAGTTTAGCC 59.873 47.826 0.00 0.00 0.00 3.93
4591 7494 3.146104 AGTGTCATGCAAGTTTAGCCT 57.854 42.857 0.00 0.00 0.00 4.58
4592 7495 2.816087 AGTGTCATGCAAGTTTAGCCTG 59.184 45.455 0.00 0.00 0.00 4.85
4769 7676 5.477984 ACAAAGTACTAGTACATCGGTTCCA 59.522 40.000 29.87 0.00 38.48 3.53
4850 7757 6.767902 ACAGAGGTGGCAATATGTAAATACAG 59.232 38.462 0.00 0.00 39.92 2.74
4936 7843 9.830975 TGTAGCTTGTTATGAAATGAGCTTATA 57.169 29.630 0.00 0.00 37.13 0.98
4975 7963 1.672356 CAGCACCCCCTCAAACTCG 60.672 63.158 0.00 0.00 0.00 4.18
5028 8016 4.142643 GGAAAAAGTTGTGTTGTGACCGTA 60.143 41.667 0.00 0.00 0.00 4.02
5278 8266 2.935201 GCCAAGTAATCTCTGCAGTCAG 59.065 50.000 14.67 4.69 41.67 3.51
5312 8300 0.534412 GCAGCTCAACCTCAGCTCTA 59.466 55.000 0.00 0.00 44.25 2.43
5417 8405 0.387878 GATCAGTAGGATCGCTGGCG 60.388 60.000 8.80 8.80 42.81 5.69
5443 8431 1.350684 TGCATCACAGTAGGCCTGAAA 59.649 47.619 17.99 0.00 44.49 2.69
5486 8474 3.427773 GGAAGAATAAGCGACGAGTCACT 60.428 47.826 0.00 0.00 0.00 3.41
5523 8511 4.911390 ACAAAGAACCCGAAGAAGATGAT 58.089 39.130 0.00 0.00 0.00 2.45
5549 8537 0.687354 GAAGGTGAGTGGGAGCAGAA 59.313 55.000 0.00 0.00 0.00 3.02
5629 8617 2.108952 AGACAAGGCTCCCAACAAGATT 59.891 45.455 0.00 0.00 0.00 2.40
5716 8704 1.544691 AGGAGTGTCAATCGTACGCTT 59.455 47.619 11.24 4.03 37.80 4.68
5732 8720 0.103937 GCTTATCAGTGAGGCGAGCT 59.896 55.000 0.00 0.00 0.00 4.09
5753 8741 4.277174 GCTCGAGTGAGAAGATCTTGGATA 59.723 45.833 14.00 0.00 45.57 2.59
5759 8747 8.356657 CGAGTGAGAAGATCTTGGATATACTTT 58.643 37.037 14.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.302172 CGGTGCGGACGCGTTTTT 62.302 61.111 15.53 0.00 45.51 1.94
27 28 4.568876 GTATCGGTTTGCGGCGCG 62.569 66.667 28.09 12.63 0.00 6.86
48 49 3.364565 CCGTAAAAGTCATTCAACACGGG 60.365 47.826 0.00 0.00 42.93 5.28
62 63 2.427232 TCGTGTCTGGACCGTAAAAG 57.573 50.000 9.87 0.00 0.00 2.27
66 67 0.108992 GCATTCGTGTCTGGACCGTA 60.109 55.000 9.87 3.73 0.00 4.02
67 68 1.374252 GCATTCGTGTCTGGACCGT 60.374 57.895 9.87 0.00 0.00 4.83
85 86 1.508632 CCGACCCTTTATACCGCATG 58.491 55.000 0.00 0.00 0.00 4.06
87 88 1.144496 GCCGACCCTTTATACCGCA 59.856 57.895 0.00 0.00 0.00 5.69
93 94 2.012902 CTCCGACGCCGACCCTTTAT 62.013 60.000 0.00 0.00 38.22 1.40
103 104 2.792947 TTAGGGCATCTCCGACGCC 61.793 63.158 0.00 0.00 40.49 5.68
107 108 2.447408 TACAGTTAGGGCATCTCCGA 57.553 50.000 0.00 0.00 34.94 4.55
108 109 3.181465 ACATTACAGTTAGGGCATCTCCG 60.181 47.826 0.00 0.00 34.94 4.63
128 129 1.889829 CGGAGGCCATTTGGTTTTACA 59.110 47.619 5.01 0.00 37.57 2.41
129 130 1.890489 ACGGAGGCCATTTGGTTTTAC 59.110 47.619 5.01 0.00 37.57 2.01
130 131 2.164338 GACGGAGGCCATTTGGTTTTA 58.836 47.619 5.01 0.00 37.57 1.52
131 132 0.966179 GACGGAGGCCATTTGGTTTT 59.034 50.000 5.01 0.00 37.57 2.43
132 133 1.241315 CGACGGAGGCCATTTGGTTT 61.241 55.000 5.01 0.00 37.57 3.27
133 134 1.674322 CGACGGAGGCCATTTGGTT 60.674 57.895 5.01 0.00 37.57 3.67
134 135 1.910580 ATCGACGGAGGCCATTTGGT 61.911 55.000 5.01 0.00 37.57 3.67
135 136 1.153168 ATCGACGGAGGCCATTTGG 60.153 57.895 5.01 0.00 38.53 3.28
136 137 0.179073 AGATCGACGGAGGCCATTTG 60.179 55.000 5.01 0.00 0.00 2.32
137 138 0.179073 CAGATCGACGGAGGCCATTT 60.179 55.000 5.01 0.00 0.00 2.32
138 139 1.443407 CAGATCGACGGAGGCCATT 59.557 57.895 5.01 0.00 0.00 3.16
139 140 2.502492 CCAGATCGACGGAGGCCAT 61.502 63.158 5.01 0.00 0.00 4.40
140 141 3.147595 CCAGATCGACGGAGGCCA 61.148 66.667 5.01 0.00 0.00 5.36
141 142 2.833582 TCCAGATCGACGGAGGCC 60.834 66.667 0.00 0.00 0.00 5.19
142 143 2.413765 GTCCAGATCGACGGAGGC 59.586 66.667 0.42 0.00 29.98 4.70
143 144 1.448922 GAGGTCCAGATCGACGGAGG 61.449 65.000 0.42 0.00 33.30 4.30
147 148 1.032657 AGGTGAGGTCCAGATCGACG 61.033 60.000 0.00 0.00 33.30 5.12
215 216 0.461548 CCTCAGCCATCGAGCTTACA 59.538 55.000 0.00 0.00 42.61 2.41
217 218 1.485124 TTCCTCAGCCATCGAGCTTA 58.515 50.000 0.00 0.00 42.61 3.09
218 219 0.615331 TTTCCTCAGCCATCGAGCTT 59.385 50.000 0.00 0.00 42.61 3.74
219 220 0.615331 TTTTCCTCAGCCATCGAGCT 59.385 50.000 0.00 0.00 46.45 4.09
221 222 2.675348 GTTCTTTTCCTCAGCCATCGAG 59.325 50.000 0.00 0.00 0.00 4.04
223 224 1.740025 GGTTCTTTTCCTCAGCCATCG 59.260 52.381 0.00 0.00 0.00 3.84
224 225 3.078891 AGGTTCTTTTCCTCAGCCATC 57.921 47.619 0.00 0.00 0.00 3.51
225 226 3.619979 CGTAGGTTCTTTTCCTCAGCCAT 60.620 47.826 0.00 0.00 36.60 4.40
228 229 1.732809 GCGTAGGTTCTTTTCCTCAGC 59.267 52.381 0.00 0.00 36.60 4.26
229 230 2.028020 AGGCGTAGGTTCTTTTCCTCAG 60.028 50.000 0.00 0.00 36.60 3.35
230 231 1.975680 AGGCGTAGGTTCTTTTCCTCA 59.024 47.619 0.00 0.00 36.60 3.86
244 245 0.182061 AGAGTACCCGATGAGGCGTA 59.818 55.000 0.00 0.00 39.21 4.42
246 247 1.655329 GAGAGTACCCGATGAGGCG 59.345 63.158 0.00 0.00 39.21 5.52
257 258 2.757686 TGATGTCGCATCGAGAGTAC 57.242 50.000 12.88 0.00 36.23 2.73
264 265 3.425193 TGATACGATTTGATGTCGCATCG 59.575 43.478 12.88 10.40 42.12 3.84
267 268 2.539688 GCTGATACGATTTGATGTCGCA 59.460 45.455 0.00 0.00 42.56 5.10
275 276 4.541085 TGCTGAATGCTGATACGATTTG 57.459 40.909 0.00 0.00 43.37 2.32
350 351 2.102420 CCCGCTAGATTCATGTGGTACA 59.898 50.000 0.00 0.00 0.00 2.90
351 352 2.755650 CCCGCTAGATTCATGTGGTAC 58.244 52.381 0.00 0.00 0.00 3.34
352 353 1.070134 GCCCGCTAGATTCATGTGGTA 59.930 52.381 0.00 0.00 0.00 3.25
353 354 0.179045 GCCCGCTAGATTCATGTGGT 60.179 55.000 0.00 0.00 0.00 4.16
354 355 0.179048 TGCCCGCTAGATTCATGTGG 60.179 55.000 0.00 2.69 0.00 4.17
355 356 0.940126 GTGCCCGCTAGATTCATGTG 59.060 55.000 0.00 0.00 0.00 3.21
385 386 1.886861 GCTCCAGTTGCACACGTACG 61.887 60.000 15.01 15.01 0.00 3.67
399 401 3.411446 CTTCTTGTGTGGTTATGCTCCA 58.589 45.455 0.00 0.00 0.00 3.86
400 402 2.162408 GCTTCTTGTGTGGTTATGCTCC 59.838 50.000 0.00 0.00 0.00 4.70
442 444 1.303309 AAGCTGCTTATCGATGTGCC 58.697 50.000 14.24 0.94 0.00 5.01
532 534 0.392461 TCTTGGGTATGACTTGCGGC 60.392 55.000 0.00 0.00 0.00 6.53
543 545 2.092429 GTGGCTGATTGGATCTTGGGTA 60.092 50.000 0.00 0.00 0.00 3.69
565 567 0.606604 GCACTCCACCCTACTTTCGA 59.393 55.000 0.00 0.00 0.00 3.71
660 667 0.178992 CAGCGAGAGGAGAGGGAGAT 60.179 60.000 0.00 0.00 0.00 2.75
661 668 1.225983 CAGCGAGAGGAGAGGGAGA 59.774 63.158 0.00 0.00 0.00 3.71
833 840 1.216977 CCCATCACTAACGGCGACA 59.783 57.895 16.62 0.00 0.00 4.35
1042 1050 2.754658 CCGCCGTCTCCTACCACT 60.755 66.667 0.00 0.00 0.00 4.00
1214 1225 1.293498 GTTCTGGAAGCCGCTGAGA 59.707 57.895 0.00 0.00 0.00 3.27
1251 1262 0.112995 AAGGTCCAGGCAAATGCAGA 59.887 50.000 7.80 0.00 44.36 4.26
1341 1352 0.545171 TCCCGACGATAGGAGTCACT 59.455 55.000 0.00 0.00 43.77 3.41
1350 1361 1.750206 TCCGACAAATTCCCGACGATA 59.250 47.619 0.00 0.00 0.00 2.92
1454 1465 1.599542 GAATTATCACGGTGCAGAGGC 59.400 52.381 2.51 0.00 41.68 4.70
1455 1466 1.860950 CGAATTATCACGGTGCAGAGG 59.139 52.381 2.51 0.00 0.00 3.69
1523 1534 5.406780 CGCCAATATAACTGCCAAAACAAAA 59.593 36.000 0.00 0.00 0.00 2.44
1631 1642 1.070134 ACCACGTAAGCAAGCAAGAGA 59.930 47.619 0.00 0.00 45.62 3.10
1636 1647 3.114668 TCTTTACCACGTAAGCAAGCA 57.885 42.857 0.00 0.00 45.62 3.91
1678 1689 6.146021 CCCTCATTTGAATTTTGTGCAGTAAC 59.854 38.462 0.00 0.00 0.00 2.50
1758 1837 6.641314 CCAGTATATAATTCTCGTGCGTTCTT 59.359 38.462 0.00 0.00 0.00 2.52
1776 1855 5.184479 AGCACGTTCTTTCTGTACCAGTATA 59.816 40.000 0.00 0.00 32.61 1.47
1777 1856 4.021368 AGCACGTTCTTTCTGTACCAGTAT 60.021 41.667 0.00 0.00 32.61 2.12
1778 1857 3.319972 AGCACGTTCTTTCTGTACCAGTA 59.680 43.478 0.00 0.00 32.61 2.74
1779 1858 2.102588 AGCACGTTCTTTCTGTACCAGT 59.897 45.455 0.00 0.00 32.61 4.00
1780 1859 2.755650 AGCACGTTCTTTCTGTACCAG 58.244 47.619 0.00 0.00 0.00 4.00
1781 1860 2.869801 CAAGCACGTTCTTTCTGTACCA 59.130 45.455 0.00 0.00 0.00 3.25
1841 1979 4.321966 TTGCCATGACACGCGGGA 62.322 61.111 19.19 0.00 0.00 5.14
1854 1992 2.639286 CTCCACGCTTGTGTTGCC 59.361 61.111 0.00 0.00 42.24 4.52
1894 2032 2.163818 AAATTCGCCTCGTCAGTCAA 57.836 45.000 0.00 0.00 0.00 3.18
2112 2250 0.247460 CGTCATGGAAGGAGACAGCA 59.753 55.000 0.00 0.00 32.68 4.41
2196 2334 2.258591 GGCGACAGCTCTTCGTCA 59.741 61.111 12.83 0.00 40.83 4.35
2346 2484 0.872388 AAGTTTTCGCACGGGATCAC 59.128 50.000 0.00 0.00 0.00 3.06
2349 2487 1.445871 GGTAAGTTTTCGCACGGGAT 58.554 50.000 0.00 0.00 0.00 3.85
2387 2707 8.612619 GTGGACAAAATCGTAATATCTGAACAT 58.387 33.333 0.00 0.00 0.00 2.71
2402 2772 4.215399 TGAGGATTTGACGTGGACAAAATC 59.785 41.667 0.00 0.89 39.95 2.17
2426 2796 5.053145 GCCATCTTGTAGGATTACTCTGTG 58.947 45.833 0.00 0.00 0.00 3.66
2427 2797 4.716784 TGCCATCTTGTAGGATTACTCTGT 59.283 41.667 0.00 0.00 0.00 3.41
2436 2806 1.339055 GCAGTGTGCCATCTTGTAGGA 60.339 52.381 0.00 0.00 37.42 2.94
2440 2810 1.202855 AGAAGCAGTGTGCCATCTTGT 60.203 47.619 0.00 0.00 46.52 3.16
2471 2874 4.142816 GCACACACCACTCATAATTCTGTC 60.143 45.833 0.00 0.00 0.00 3.51
2473 2876 4.005650 AGCACACACCACTCATAATTCTG 58.994 43.478 0.00 0.00 0.00 3.02
2486 2889 2.557805 CGCACATCAGCACACACC 59.442 61.111 0.00 0.00 0.00 4.16
2491 2894 0.443869 CAGTAACCGCACATCAGCAC 59.556 55.000 0.00 0.00 0.00 4.40
2548 2951 5.047847 TCACCGAGACTGTAAAAGAAAGTG 58.952 41.667 0.00 0.00 0.00 3.16
2603 3006 8.688151 GGACATGAGACAGTAAGAAATACTACT 58.312 37.037 0.00 0.00 43.12 2.57
2604 3007 8.467598 TGGACATGAGACAGTAAGAAATACTAC 58.532 37.037 0.00 0.00 43.12 2.73
2605 3008 8.589701 TGGACATGAGACAGTAAGAAATACTA 57.410 34.615 0.00 0.00 43.12 1.82
2606 3009 7.482169 TGGACATGAGACAGTAAGAAATACT 57.518 36.000 0.00 0.00 45.95 2.12
2642 3045 7.818930 TGATCCTTGCTAATTCAAATTCCAAAC 59.181 33.333 0.00 0.00 0.00 2.93
2669 3072 9.901172 TTATTTAACCCTAGGACTTCTGAATTC 57.099 33.333 11.48 0.00 0.00 2.17
2686 3089 7.755582 CTGGCACTGCTAATTTTATTTAACC 57.244 36.000 0.00 0.00 0.00 2.85
2716 5511 1.069703 CATGCAGCATACCGAAATCCG 60.070 52.381 7.82 0.00 38.18 4.18
2717 5512 2.221169 TCATGCAGCATACCGAAATCC 58.779 47.619 7.82 0.00 0.00 3.01
2718 5513 2.874701 ACTCATGCAGCATACCGAAATC 59.125 45.455 7.82 0.00 0.00 2.17
2719 5514 2.923121 ACTCATGCAGCATACCGAAAT 58.077 42.857 7.82 0.00 0.00 2.17
2720 5515 2.401583 ACTCATGCAGCATACCGAAA 57.598 45.000 7.82 0.00 0.00 3.46
2721 5516 3.132111 TCTTACTCATGCAGCATACCGAA 59.868 43.478 7.82 0.00 0.00 4.30
2722 5517 2.693074 TCTTACTCATGCAGCATACCGA 59.307 45.455 7.82 0.26 0.00 4.69
2723 5518 2.797156 GTCTTACTCATGCAGCATACCG 59.203 50.000 7.82 1.90 0.00 4.02
2724 5519 4.065321 AGTCTTACTCATGCAGCATACC 57.935 45.455 7.82 0.00 0.00 2.73
2725 5520 5.837437 AGTAGTCTTACTCATGCAGCATAC 58.163 41.667 7.82 0.43 35.13 2.39
2726 5521 7.767250 ATAGTAGTCTTACTCATGCAGCATA 57.233 36.000 7.82 0.00 40.55 3.14
2727 5522 6.662865 ATAGTAGTCTTACTCATGCAGCAT 57.337 37.500 0.52 0.52 40.55 3.79
2728 5523 6.276091 CAATAGTAGTCTTACTCATGCAGCA 58.724 40.000 0.00 0.00 40.55 4.41
2729 5524 5.176590 GCAATAGTAGTCTTACTCATGCAGC 59.823 44.000 14.55 0.00 43.75 5.25
2730 5525 6.276091 TGCAATAGTAGTCTTACTCATGCAG 58.724 40.000 16.64 0.00 46.06 4.41
2732 5527 6.199908 CAGTGCAATAGTAGTCTTACTCATGC 59.800 42.308 13.39 13.39 44.13 4.06
2733 5528 7.261325 ACAGTGCAATAGTAGTCTTACTCATG 58.739 38.462 0.00 0.00 40.55 3.07
2734 5529 7.411486 ACAGTGCAATAGTAGTCTTACTCAT 57.589 36.000 0.00 0.00 40.55 2.90
2735 5530 6.835819 ACAGTGCAATAGTAGTCTTACTCA 57.164 37.500 0.00 0.00 40.55 3.41
2745 5540 9.244799 CGACTGAATTATAACAGTGCAATAGTA 57.755 33.333 12.16 0.00 45.54 1.82
2783 5578 9.423061 GTGAAAATTCTTGCCAAAATAGTGTAT 57.577 29.630 0.00 0.00 0.00 2.29
2810 5605 7.636259 AATAAACAATTGTGTGATCCGTTTG 57.364 32.000 12.82 0.00 38.27 2.93
2833 5628 7.374272 TCCGTTGCAATTATTTGATCAAGAAA 58.626 30.769 8.41 7.53 34.60 2.52
2843 5638 3.445805 ACCGGAATCCGTTGCAATTATTT 59.554 39.130 21.12 0.00 46.80 1.40
2844 5639 3.020984 ACCGGAATCCGTTGCAATTATT 58.979 40.909 21.12 2.91 46.80 1.40
2845 5640 2.650322 ACCGGAATCCGTTGCAATTAT 58.350 42.857 21.12 0.00 46.80 1.28
2846 5641 2.116827 ACCGGAATCCGTTGCAATTA 57.883 45.000 21.12 0.00 46.80 1.40
2847 5642 1.067915 CAACCGGAATCCGTTGCAATT 60.068 47.619 21.12 2.19 46.80 2.32
2848 5643 0.525761 CAACCGGAATCCGTTGCAAT 59.474 50.000 21.12 0.00 46.80 3.56
2849 5644 1.953017 CAACCGGAATCCGTTGCAA 59.047 52.632 21.12 0.00 46.80 4.08
2850 5645 3.661911 CAACCGGAATCCGTTGCA 58.338 55.556 21.12 0.00 46.80 4.08
2851 5646 2.178273 GCAACCGGAATCCGTTGC 59.822 61.111 30.21 30.21 46.76 4.17
2852 5647 0.953471 TGAGCAACCGGAATCCGTTG 60.953 55.000 21.12 22.30 46.80 4.10
2853 5648 0.035439 ATGAGCAACCGGAATCCGTT 60.035 50.000 21.12 11.80 46.80 4.44
2854 5649 0.828022 TATGAGCAACCGGAATCCGT 59.172 50.000 21.12 5.95 46.80 4.69
2856 5651 2.103263 AGACTATGAGCAACCGGAATCC 59.897 50.000 9.46 0.00 0.00 3.01
2857 5652 3.460857 AGACTATGAGCAACCGGAATC 57.539 47.619 9.46 0.12 0.00 2.52
2858 5653 3.535561 CAAGACTATGAGCAACCGGAAT 58.464 45.455 9.46 0.00 0.00 3.01
2859 5654 2.935238 GCAAGACTATGAGCAACCGGAA 60.935 50.000 9.46 0.00 0.00 4.30
2860 5655 1.405526 GCAAGACTATGAGCAACCGGA 60.406 52.381 9.46 0.00 0.00 5.14
2861 5656 1.009829 GCAAGACTATGAGCAACCGG 58.990 55.000 0.00 0.00 0.00 5.28
2862 5657 1.929836 GAGCAAGACTATGAGCAACCG 59.070 52.381 0.00 0.00 0.00 4.44
2863 5658 2.935201 CTGAGCAAGACTATGAGCAACC 59.065 50.000 0.00 0.00 0.00 3.77
2864 5659 3.594134 ACTGAGCAAGACTATGAGCAAC 58.406 45.455 0.00 0.00 0.00 4.17
2865 5660 3.969287 ACTGAGCAAGACTATGAGCAA 57.031 42.857 0.00 0.00 0.00 3.91
2866 5661 3.593096 CAACTGAGCAAGACTATGAGCA 58.407 45.455 0.00 0.00 0.00 4.26
2867 5662 2.935201 CCAACTGAGCAAGACTATGAGC 59.065 50.000 0.00 0.00 0.00 4.26
2868 5663 3.055530 ACCCAACTGAGCAAGACTATGAG 60.056 47.826 0.00 0.00 0.00 2.90
2869 5664 2.906389 ACCCAACTGAGCAAGACTATGA 59.094 45.455 0.00 0.00 0.00 2.15
2870 5665 3.265791 GACCCAACTGAGCAAGACTATG 58.734 50.000 0.00 0.00 0.00 2.23
2871 5666 2.906389 TGACCCAACTGAGCAAGACTAT 59.094 45.455 0.00 0.00 0.00 2.12
2872 5667 2.325484 TGACCCAACTGAGCAAGACTA 58.675 47.619 0.00 0.00 0.00 2.59
2873 5668 1.131638 TGACCCAACTGAGCAAGACT 58.868 50.000 0.00 0.00 0.00 3.24
2874 5669 2.191128 ATGACCCAACTGAGCAAGAC 57.809 50.000 0.00 0.00 0.00 3.01
2875 5670 3.072330 TGTTATGACCCAACTGAGCAAGA 59.928 43.478 0.00 0.00 0.00 3.02
2876 5671 3.411446 TGTTATGACCCAACTGAGCAAG 58.589 45.455 0.00 0.00 0.00 4.01
2877 5672 3.500448 TGTTATGACCCAACTGAGCAA 57.500 42.857 0.00 0.00 0.00 3.91
2878 5673 3.500448 TTGTTATGACCCAACTGAGCA 57.500 42.857 0.00 0.00 0.00 4.26
2879 5674 5.186198 AGTATTGTTATGACCCAACTGAGC 58.814 41.667 0.00 0.00 0.00 4.26
2880 5675 5.520288 CGAGTATTGTTATGACCCAACTGAG 59.480 44.000 0.00 0.00 0.00 3.35
2881 5676 5.046878 ACGAGTATTGTTATGACCCAACTGA 60.047 40.000 0.00 0.00 0.00 3.41
2882 5677 5.175859 ACGAGTATTGTTATGACCCAACTG 58.824 41.667 0.00 0.00 0.00 3.16
2883 5678 5.416271 ACGAGTATTGTTATGACCCAACT 57.584 39.130 0.00 0.00 0.00 3.16
2884 5679 6.101332 TGTACGAGTATTGTTATGACCCAAC 58.899 40.000 0.00 0.00 32.63 3.77
2885 5680 6.071221 ACTGTACGAGTATTGTTATGACCCAA 60.071 38.462 0.00 0.00 32.63 4.12
2886 5681 5.419788 ACTGTACGAGTATTGTTATGACCCA 59.580 40.000 0.00 0.00 32.63 4.51
2887 5682 5.899299 ACTGTACGAGTATTGTTATGACCC 58.101 41.667 0.00 0.00 32.63 4.46
2888 5683 5.680229 CGACTGTACGAGTATTGTTATGACC 59.320 44.000 0.00 0.00 33.83 4.02
2889 5684 6.253746 ACGACTGTACGAGTATTGTTATGAC 58.746 40.000 0.00 0.00 33.83 3.06
2890 5685 6.426980 ACGACTGTACGAGTATTGTTATGA 57.573 37.500 0.00 0.00 33.83 2.15
2891 5686 7.586403 GTACGACTGTACGAGTATTGTTATG 57.414 40.000 0.00 0.00 41.41 1.90
2908 5703 0.393077 AGCCAAACAGCAGTACGACT 59.607 50.000 0.00 0.00 34.23 4.18
2909 5704 0.512952 CAGCCAAACAGCAGTACGAC 59.487 55.000 0.00 0.00 34.23 4.34
2910 5705 0.391228 TCAGCCAAACAGCAGTACGA 59.609 50.000 0.00 0.00 34.23 3.43
2911 5706 0.792640 CTCAGCCAAACAGCAGTACG 59.207 55.000 0.00 0.00 34.23 3.67
2912 5707 1.160137 CCTCAGCCAAACAGCAGTAC 58.840 55.000 0.00 0.00 34.23 2.73
2913 5708 0.764890 ACCTCAGCCAAACAGCAGTA 59.235 50.000 0.00 0.00 34.23 2.74
2914 5709 0.536006 GACCTCAGCCAAACAGCAGT 60.536 55.000 0.00 0.00 34.23 4.40
2915 5710 0.250640 AGACCTCAGCCAAACAGCAG 60.251 55.000 0.00 0.00 34.23 4.24
2916 5711 0.535780 CAGACCTCAGCCAAACAGCA 60.536 55.000 0.00 0.00 34.23 4.41
2917 5712 0.536006 ACAGACCTCAGCCAAACAGC 60.536 55.000 0.00 0.00 0.00 4.40
2918 5713 1.876156 GAACAGACCTCAGCCAAACAG 59.124 52.381 0.00 0.00 0.00 3.16
2919 5714 1.476833 GGAACAGACCTCAGCCAAACA 60.477 52.381 0.00 0.00 0.00 2.83
2920 5715 1.202818 AGGAACAGACCTCAGCCAAAC 60.203 52.381 0.00 0.00 34.98 2.93
2921 5716 1.140312 AGGAACAGACCTCAGCCAAA 58.860 50.000 0.00 0.00 34.98 3.28
2922 5717 2.854253 AGGAACAGACCTCAGCCAA 58.146 52.632 0.00 0.00 34.98 4.52
2923 5718 4.648007 AGGAACAGACCTCAGCCA 57.352 55.556 0.00 0.00 34.98 4.75
2929 5724 5.574970 AGAATTTCTTGAGGAACAGACCT 57.425 39.130 0.00 0.00 43.64 3.85
2930 5725 7.627300 GCAATAGAATTTCTTGAGGAACAGACC 60.627 40.741 3.86 0.00 33.13 3.85
2931 5726 7.120432 AGCAATAGAATTTCTTGAGGAACAGAC 59.880 37.037 3.86 0.00 33.13 3.51
2932 5727 7.120285 CAGCAATAGAATTTCTTGAGGAACAGA 59.880 37.037 3.86 0.00 33.13 3.41
2933 5728 7.094463 ACAGCAATAGAATTTCTTGAGGAACAG 60.094 37.037 3.86 0.00 33.13 3.16
2934 5729 6.716628 ACAGCAATAGAATTTCTTGAGGAACA 59.283 34.615 3.86 0.00 33.13 3.18
2935 5730 7.150783 ACAGCAATAGAATTTCTTGAGGAAC 57.849 36.000 3.86 0.00 33.13 3.62
2936 5731 9.113838 GATACAGCAATAGAATTTCTTGAGGAA 57.886 33.333 3.86 0.00 0.00 3.36
2937 5732 8.267183 TGATACAGCAATAGAATTTCTTGAGGA 58.733 33.333 3.86 0.00 0.00 3.71
2938 5733 8.442632 TGATACAGCAATAGAATTTCTTGAGG 57.557 34.615 3.86 0.00 0.00 3.86
2939 5734 9.322773 TCTGATACAGCAATAGAATTTCTTGAG 57.677 33.333 3.86 0.00 0.00 3.02
2940 5735 9.671279 TTCTGATACAGCAATAGAATTTCTTGA 57.329 29.630 3.86 0.00 0.00 3.02
2941 5736 9.713740 GTTCTGATACAGCAATAGAATTTCTTG 57.286 33.333 3.86 0.00 30.97 3.02
2942 5737 8.607459 CGTTCTGATACAGCAATAGAATTTCTT 58.393 33.333 3.86 0.00 30.97 2.52
2943 5738 7.981789 TCGTTCTGATACAGCAATAGAATTTCT 59.018 33.333 4.03 4.03 30.97 2.52
2944 5739 8.131455 TCGTTCTGATACAGCAATAGAATTTC 57.869 34.615 0.00 0.00 30.97 2.17
2945 5740 8.668510 ATCGTTCTGATACAGCAATAGAATTT 57.331 30.769 0.00 0.00 34.83 1.82
2946 5741 8.554528 CAATCGTTCTGATACAGCAATAGAATT 58.445 33.333 0.00 0.00 35.84 2.17
2947 5742 7.712639 ACAATCGTTCTGATACAGCAATAGAAT 59.287 33.333 0.00 0.00 35.84 2.40
2948 5743 7.041721 ACAATCGTTCTGATACAGCAATAGAA 58.958 34.615 0.00 0.00 35.84 2.10
2949 5744 6.573434 ACAATCGTTCTGATACAGCAATAGA 58.427 36.000 0.00 0.00 35.84 1.98
2950 5745 6.834959 ACAATCGTTCTGATACAGCAATAG 57.165 37.500 0.00 0.00 35.84 1.73
2951 5746 8.887036 ATTACAATCGTTCTGATACAGCAATA 57.113 30.769 0.00 0.00 35.84 1.90
2952 5747 7.041780 GGATTACAATCGTTCTGATACAGCAAT 60.042 37.037 0.00 0.00 35.84 3.56
2953 5748 6.257849 GGATTACAATCGTTCTGATACAGCAA 59.742 38.462 0.00 0.00 35.84 3.91
2954 5749 5.753438 GGATTACAATCGTTCTGATACAGCA 59.247 40.000 0.00 0.00 35.84 4.41
2955 5750 5.177696 GGGATTACAATCGTTCTGATACAGC 59.822 44.000 0.00 0.00 35.84 4.40
2956 5751 5.696724 GGGGATTACAATCGTTCTGATACAG 59.303 44.000 0.00 0.00 35.84 2.74
2957 5752 5.129650 TGGGGATTACAATCGTTCTGATACA 59.870 40.000 0.00 0.00 35.84 2.29
2958 5753 5.607477 TGGGGATTACAATCGTTCTGATAC 58.393 41.667 0.00 0.00 35.84 2.24
2959 5754 5.880164 TGGGGATTACAATCGTTCTGATA 57.120 39.130 0.00 0.00 35.84 2.15
2960 5755 4.771114 TGGGGATTACAATCGTTCTGAT 57.229 40.909 0.00 0.00 39.67 2.90
2961 5756 4.450976 CATGGGGATTACAATCGTTCTGA 58.549 43.478 0.00 0.00 36.27 3.27
2962 5757 3.565482 CCATGGGGATTACAATCGTTCTG 59.435 47.826 2.85 0.00 36.27 3.02
2963 5758 3.202151 ACCATGGGGATTACAATCGTTCT 59.798 43.478 18.09 0.00 36.27 3.01
2964 5759 3.551846 ACCATGGGGATTACAATCGTTC 58.448 45.455 18.09 0.00 36.27 3.95
2965 5760 3.662759 ACCATGGGGATTACAATCGTT 57.337 42.857 18.09 0.00 36.27 3.85
2966 5761 3.662759 AACCATGGGGATTACAATCGT 57.337 42.857 18.09 0.00 36.27 3.73
2967 5762 4.023193 GCTTAACCATGGGGATTACAATCG 60.023 45.833 18.09 0.00 36.27 3.34
2968 5763 4.892934 TGCTTAACCATGGGGATTACAATC 59.107 41.667 18.09 0.00 38.05 2.67
2969 5764 4.877773 TGCTTAACCATGGGGATTACAAT 58.122 39.130 18.09 0.00 38.05 2.71
2970 5765 4.323569 TGCTTAACCATGGGGATTACAA 57.676 40.909 18.09 0.00 38.05 2.41
2971 5766 4.323569 TTGCTTAACCATGGGGATTACA 57.676 40.909 18.09 4.07 38.05 2.41
2972 5767 4.892934 TCATTGCTTAACCATGGGGATTAC 59.107 41.667 18.09 1.18 38.05 1.89
2973 5768 5.136068 TCATTGCTTAACCATGGGGATTA 57.864 39.130 18.09 2.69 38.05 1.75
2974 5769 3.992999 TCATTGCTTAACCATGGGGATT 58.007 40.909 18.09 3.80 38.05 3.01
2975 5770 3.686227 TCATTGCTTAACCATGGGGAT 57.314 42.857 18.09 4.34 38.05 3.85
2976 5771 3.464720 TTCATTGCTTAACCATGGGGA 57.535 42.857 18.09 0.00 38.05 4.81
2977 5772 4.758773 AATTCATTGCTTAACCATGGGG 57.241 40.909 18.09 4.34 41.29 4.96
2978 5773 5.981174 AGAAATTCATTGCTTAACCATGGG 58.019 37.500 18.09 0.00 0.00 4.00
2979 5774 7.910441 AAAGAAATTCATTGCTTAACCATGG 57.090 32.000 11.19 11.19 34.57 3.66
2980 5775 9.815936 GAAAAAGAAATTCATTGCTTAACCATG 57.184 29.630 0.00 0.00 34.57 3.66
2981 5776 9.002600 GGAAAAAGAAATTCATTGCTTAACCAT 57.997 29.630 0.00 0.00 34.57 3.55
2982 5777 7.443879 GGGAAAAAGAAATTCATTGCTTAACCA 59.556 33.333 0.00 0.00 34.57 3.67
2983 5778 7.360017 CGGGAAAAAGAAATTCATTGCTTAACC 60.360 37.037 0.00 0.00 34.57 2.85
2984 5779 7.509797 CGGGAAAAAGAAATTCATTGCTTAAC 58.490 34.615 0.00 0.00 34.57 2.01
2985 5780 6.147000 GCGGGAAAAAGAAATTCATTGCTTAA 59.853 34.615 0.00 0.00 34.57 1.85
2986 5781 5.637387 GCGGGAAAAAGAAATTCATTGCTTA 59.363 36.000 0.00 0.00 34.57 3.09
2987 5782 4.452114 GCGGGAAAAAGAAATTCATTGCTT 59.548 37.500 0.00 0.00 37.24 3.91
2988 5783 3.996363 GCGGGAAAAAGAAATTCATTGCT 59.004 39.130 0.00 0.00 0.00 3.91
2989 5784 3.745458 TGCGGGAAAAAGAAATTCATTGC 59.255 39.130 0.00 0.00 0.00 3.56
2990 5785 5.921004 TTGCGGGAAAAAGAAATTCATTG 57.079 34.783 0.00 0.00 0.00 2.82
2991 5786 6.934048 TTTTGCGGGAAAAAGAAATTCATT 57.066 29.167 4.86 0.00 30.25 2.57
2992 5787 6.934048 TTTTTGCGGGAAAAAGAAATTCAT 57.066 29.167 14.93 0.00 38.38 2.57
2993 5788 6.934048 ATTTTTGCGGGAAAAAGAAATTCA 57.066 29.167 21.63 0.99 44.76 2.57
3000 5795 9.060547 GCAATTATTTATTTTTGCGGGAAAAAG 57.939 29.630 21.63 8.94 44.76 2.27
3001 5796 8.567948 TGCAATTATTTATTTTTGCGGGAAAAA 58.432 25.926 19.95 19.95 45.66 1.94
3002 5797 8.099364 TGCAATTATTTATTTTTGCGGGAAAA 57.901 26.923 3.11 3.11 45.66 2.29
3003 5798 7.672983 TGCAATTATTTATTTTTGCGGGAAA 57.327 28.000 0.00 0.00 45.66 3.13
3004 5799 7.173218 TGTTGCAATTATTTATTTTTGCGGGAA 59.827 29.630 0.59 0.00 45.66 3.97
3005 5800 6.650807 TGTTGCAATTATTTATTTTTGCGGGA 59.349 30.769 0.59 0.00 45.66 5.14
3006 5801 6.835914 TGTTGCAATTATTTATTTTTGCGGG 58.164 32.000 0.59 0.00 45.66 6.13
3007 5802 7.737395 TCTGTTGCAATTATTTATTTTTGCGG 58.263 30.769 0.59 0.00 45.66 5.69
3008 5803 8.434661 ACTCTGTTGCAATTATTTATTTTTGCG 58.565 29.630 0.59 0.00 45.66 4.85
3058 5853 9.417561 TGCTTTCAGGTAGTACTAGTGTATTAT 57.582 33.333 5.39 0.00 0.00 1.28
3059 5854 8.680903 GTGCTTTCAGGTAGTACTAGTGTATTA 58.319 37.037 5.39 0.00 0.00 0.98
3060 5855 7.177921 TGTGCTTTCAGGTAGTACTAGTGTATT 59.822 37.037 5.39 0.00 0.00 1.89
3061 5856 6.662234 TGTGCTTTCAGGTAGTACTAGTGTAT 59.338 38.462 5.39 0.00 0.00 2.29
3071 5866 3.131396 CGAAACTGTGCTTTCAGGTAGT 58.869 45.455 8.44 0.00 39.48 2.73
3073 5868 1.871039 GCGAAACTGTGCTTTCAGGTA 59.129 47.619 8.44 0.00 39.48 3.08
3106 5901 9.605955 GCAAACAAGTCAAAAATTAAACTGTTT 57.394 25.926 10.98 10.98 0.00 2.83
3127 5924 3.813166 TGCTTTCAGGTAGTACTGCAAAC 59.187 43.478 13.26 0.00 38.36 2.93
3149 5946 3.064820 CGTCTTTGCTGTAACCAAACTGT 59.935 43.478 0.00 0.00 0.00 3.55
3235 6032 1.195448 CAAAGCTGGTCTGCAGTTACG 59.805 52.381 14.67 2.65 34.99 3.18
3254 6051 2.224992 TGGGTAGAAATTCAAGGCTGCA 60.225 45.455 0.50 0.00 0.00 4.41
3282 6087 1.583495 GGGAAAACAGCTACACGGCC 61.583 60.000 0.00 0.00 0.00 6.13
3285 6090 5.427036 TTTTAAGGGAAAACAGCTACACG 57.573 39.130 0.00 0.00 31.90 4.49
3299 6104 3.996363 GCAGCCTTGAATGTTTTTAAGGG 59.004 43.478 10.23 0.00 44.73 3.95
3303 6108 5.068987 ACTCTTGCAGCCTTGAATGTTTTTA 59.931 36.000 0.00 0.00 0.00 1.52
3304 6109 4.141869 ACTCTTGCAGCCTTGAATGTTTTT 60.142 37.500 0.00 0.00 0.00 1.94
3309 6114 3.341823 AGTACTCTTGCAGCCTTGAATG 58.658 45.455 0.00 0.00 0.00 2.67
3311 6116 3.492102 AAGTACTCTTGCAGCCTTGAA 57.508 42.857 0.00 0.00 32.09 2.69
3375 6182 4.370364 ACTGTTAACTGCAAAGGTGTTG 57.630 40.909 11.98 0.00 0.00 3.33
3421 6228 4.101741 ACAATAAGTAGCATCTCCTCACCC 59.898 45.833 0.00 0.00 0.00 4.61
3491 6298 9.657121 CTAAAAACTTCAGCAAGTAAGAGAAAG 57.343 33.333 0.00 0.00 42.45 2.62
3524 6331 8.655092 TGAAAATTATTCAATGATCAAAACCGC 58.345 29.630 0.00 0.00 0.00 5.68
3678 6485 2.477357 GCACTGCGTCAGATCTACGTTA 60.477 50.000 19.10 11.69 42.26 3.18
3679 6486 1.732732 GCACTGCGTCAGATCTACGTT 60.733 52.381 19.10 7.61 42.26 3.99
3691 6498 4.253685 AGAAATACACTATTGCACTGCGT 58.746 39.130 0.00 0.00 0.00 5.24
3856 6667 9.965824 GTTGAAAGGATCATCAAGTTTCTTTTA 57.034 29.630 7.76 0.00 38.03 1.52
3961 6773 8.715088 CACTAGTGTAAACTGTTGGGTAATAAC 58.285 37.037 15.06 0.00 0.00 1.89
4020 6915 2.556114 CCTTGAGCAATTCCCTGGAAGT 60.556 50.000 4.72 0.00 37.56 3.01
4042 6937 8.068380 GCAAAAGAACTAATTCCCGATATACAC 58.932 37.037 0.00 0.00 35.18 2.90
4051 6946 3.258123 TGCTGGCAAAAGAACTAATTCCC 59.742 43.478 0.00 0.00 35.18 3.97
4087 6982 2.983229 CCTGTCAAGGGAGTGAAGATG 58.017 52.381 0.00 0.00 40.27 2.90
4110 7005 1.815613 CATCCGTTTGTTATGTGCCCA 59.184 47.619 0.00 0.00 0.00 5.36
4114 7009 4.159377 ACTTGCATCCGTTTGTTATGTG 57.841 40.909 0.00 0.00 0.00 3.21
4121 7016 3.443037 TGACAAAACTTGCATCCGTTTG 58.557 40.909 9.21 9.48 33.93 2.93
4122 7017 3.130340 ACTGACAAAACTTGCATCCGTTT 59.870 39.130 0.00 0.00 35.04 3.60
4268 7165 2.514592 CATGGCAGGCCTACCGTG 60.515 66.667 26.65 26.65 42.76 4.94
4280 7177 1.909700 TCAGAAAGGTGTTCCATGGC 58.090 50.000 6.96 0.00 35.89 4.40
4282 7179 6.282930 ACAAAATTCAGAAAGGTGTTCCATG 58.717 36.000 0.00 0.00 35.89 3.66
4283 7180 6.484364 ACAAAATTCAGAAAGGTGTTCCAT 57.516 33.333 0.00 0.00 35.89 3.41
4323 7221 8.603304 ACCAAATCTTCAGTAACAGGTAGTATT 58.397 33.333 0.00 0.00 0.00 1.89
4325 7223 7.233962 TCACCAAATCTTCAGTAACAGGTAGTA 59.766 37.037 0.00 0.00 0.00 1.82
4326 7224 6.042781 TCACCAAATCTTCAGTAACAGGTAGT 59.957 38.462 0.00 0.00 0.00 2.73
4327 7225 6.464222 TCACCAAATCTTCAGTAACAGGTAG 58.536 40.000 0.00 0.00 0.00 3.18
4328 7226 6.042781 ACTCACCAAATCTTCAGTAACAGGTA 59.957 38.462 0.00 0.00 0.00 3.08
4331 7229 6.867662 AACTCACCAAATCTTCAGTAACAG 57.132 37.500 0.00 0.00 0.00 3.16
4339 7237 5.108517 TGCACAAAAACTCACCAAATCTTC 58.891 37.500 0.00 0.00 0.00 2.87
4368 7266 3.066342 CCTAATGCTGATGACAAAGGCAG 59.934 47.826 0.00 0.00 36.35 4.85
4456 7354 2.878406 CTCTTAACCAGGGTGTTGTGTG 59.122 50.000 0.00 0.00 0.00 3.82
4570 7473 4.002982 CAGGCTAAACTTGCATGACACTA 58.997 43.478 6.60 0.00 43.76 2.74
4572 7475 2.095059 CCAGGCTAAACTTGCATGACAC 60.095 50.000 6.60 0.00 43.76 3.67
4573 7476 2.161855 CCAGGCTAAACTTGCATGACA 58.838 47.619 6.60 0.00 43.76 3.58
4574 7477 2.095059 CACCAGGCTAAACTTGCATGAC 60.095 50.000 6.60 0.00 43.76 3.06
4575 7478 2.161855 CACCAGGCTAAACTTGCATGA 58.838 47.619 6.60 0.00 43.76 3.07
4576 7479 1.888512 ACACCAGGCTAAACTTGCATG 59.111 47.619 0.00 0.00 41.20 4.06
4577 7480 2.292828 ACACCAGGCTAAACTTGCAT 57.707 45.000 0.00 0.00 0.00 3.96
4578 7481 2.940994 TACACCAGGCTAAACTTGCA 57.059 45.000 0.00 0.00 0.00 4.08
4579 7482 3.305131 GGTTTACACCAGGCTAAACTTGC 60.305 47.826 15.49 0.00 43.61 4.01
4580 7483 4.499037 GGTTTACACCAGGCTAAACTTG 57.501 45.455 15.49 0.00 43.61 3.16
4592 7495 4.886496 AAGACAGTAGGAGGTTTACACC 57.114 45.455 0.00 0.00 44.67 4.16
4850 7757 3.863424 TCGAATTTATCACCAGAAGTCGC 59.137 43.478 0.00 0.00 39.72 5.19
4936 7843 0.106719 CCTGTTGGCCCCGATAATGT 60.107 55.000 0.00 0.00 0.00 2.71
4975 7963 0.543749 CAGTGTCCAAGATCCCCCTC 59.456 60.000 0.00 0.00 0.00 4.30
5028 8016 5.240891 TGATTTTCTCACGAAAGCTCAGAT 58.759 37.500 0.00 0.00 40.04 2.90
5278 8266 0.040603 GCTGCGAGCTATGGCATTTC 60.041 55.000 4.78 0.69 39.60 2.17
5309 8297 2.950309 GACTGTTGTATCCCGCTCTAGA 59.050 50.000 0.00 0.00 0.00 2.43
5312 8300 1.478510 CAGACTGTTGTATCCCGCTCT 59.521 52.381 0.00 0.00 0.00 4.09
5417 8405 1.089920 CCTACTGTGATGCAACCTGC 58.910 55.000 0.00 0.00 45.29 4.85
5443 8431 0.610509 TCGCTCCAGCTCTCTTCAGT 60.611 55.000 0.00 0.00 39.32 3.41
5523 8511 2.632996 CTCCCACTCACCTTCACTACAA 59.367 50.000 0.00 0.00 0.00 2.41
5549 8537 5.356751 TGTGCACATTCTAAGTCAGTTTGTT 59.643 36.000 17.42 0.00 0.00 2.83
5629 8617 3.365291 GATCCCACACGCTACCGCA 62.365 63.158 0.00 0.00 38.22 5.69
5716 8704 0.463833 TCGAGCTCGCCTCACTGATA 60.464 55.000 30.97 7.00 40.78 2.15
5729 8717 2.426738 CCAAGATCTTCTCACTCGAGCT 59.573 50.000 13.61 0.00 39.30 4.09
5732 8720 7.227873 AGTATATCCAAGATCTTCTCACTCGA 58.772 38.462 4.57 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.