Multiple sequence alignment - TraesCS6D01G233600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G233600 chr6D 100.000 2856 0 0 1 2856 327601083 327598228 0.000000e+00 5275.0
1 TraesCS6D01G233600 chr6B 93.014 1460 70 11 231 1685 491605639 491604207 0.000000e+00 2102.0
2 TraesCS6D01G233600 chr6B 86.747 332 35 7 2529 2856 491603484 491603158 7.520000e-96 361.0
3 TraesCS6D01G233600 chr6B 94.421 233 12 1 2224 2456 491603716 491603485 9.730000e-95 357.0
4 TraesCS6D01G233600 chr6B 91.189 227 17 1 4 230 415733872 415733649 3.570000e-79 305.0
5 TraesCS6D01G233600 chr6B 93.627 204 12 1 1975 2177 491603920 491603717 1.290000e-78 303.0
6 TraesCS6D01G233600 chr6B 89.565 115 4 1 1841 1947 491604142 491604028 3.840000e-29 139.0
7 TraesCS6D01G233600 chr6B 100.000 30 0 0 2796 2825 491603247 491603276 3.980000e-04 56.5
8 TraesCS6D01G233600 chr6A 95.844 818 26 4 874 1687 466655415 466654602 0.000000e+00 1315.0
9 TraesCS6D01G233600 chr6A 91.667 348 27 2 2509 2856 466652821 466652476 5.530000e-132 481.0
10 TraesCS6D01G233600 chr6A 90.571 350 27 4 2509 2856 466653820 466653475 2.590000e-125 459.0
11 TraesCS6D01G233600 chr6A 94.800 250 12 1 2217 2465 466654059 466653810 3.450000e-104 388.0
12 TraesCS6D01G233600 chr6A 94.163 257 7 3 435 684 466657691 466657436 4.460000e-103 385.0
13 TraesCS6D01G233600 chr6A 86.895 351 26 2 2525 2855 466628145 466627795 2.690000e-100 375.0
14 TraesCS6D01G233600 chr6A 94.715 246 6 4 1975 2219 466654335 466654096 2.690000e-100 375.0
15 TraesCS6D01G233600 chr6A 93.173 249 16 1 2217 2465 466653058 466652811 5.820000e-97 364.0
16 TraesCS6D01G233600 chr6A 93.506 231 11 2 2 232 611913564 611913790 9.800000e-90 340.0
17 TraesCS6D01G233600 chr6A 97.849 186 4 0 261 446 466659206 466659021 3.550000e-84 322.0
18 TraesCS6D01G233600 chr6A 89.655 232 22 1 2622 2853 466630881 466630652 7.740000e-76 294.0
19 TraesCS6D01G233600 chr6A 91.549 213 15 2 2223 2435 466630225 466630016 1.000000e-74 291.0
20 TraesCS6D01G233600 chr6A 91.925 161 7 2 717 876 466657133 466656978 1.330000e-53 220.0
21 TraesCS6D01G233600 chr6A 96.667 120 4 0 2509 2628 466649127 466649008 1.740000e-47 200.0
22 TraesCS6D01G233600 chr6A 93.798 129 5 3 1841 1966 466654537 466654409 1.040000e-44 191.0
23 TraesCS6D01G233600 chrUn 93.506 231 12 1 2 232 132176575 132176348 9.800000e-90 340.0
24 TraesCS6D01G233600 chr1D 93.043 230 12 2 2 230 392065941 392066167 1.640000e-87 333.0
25 TraesCS6D01G233600 chr1D 92.641 231 13 2 4 233 226934265 226934038 2.120000e-86 329.0
26 TraesCS6D01G233600 chr3D 92.308 234 14 2 1 233 89553465 89553695 2.120000e-86 329.0
27 TraesCS6D01G233600 chr3D 77.807 383 52 23 1093 1473 152815776 152816127 3.730000e-49 206.0
28 TraesCS6D01G233600 chr7D 92.952 227 13 1 4 230 493551706 493551483 7.630000e-86 327.0
29 TraesCS6D01G233600 chr4D 92.609 230 14 1 1 230 458977297 458977523 7.630000e-86 327.0
30 TraesCS6D01G233600 chr4D 90.476 147 6 1 1685 1823 259155521 259155375 1.350000e-43 187.0
31 TraesCS6D01G233600 chr2D 89.015 264 28 1 2594 2856 607094330 607094593 2.740000e-85 326.0
32 TraesCS6D01G233600 chr3B 91.379 232 17 1 2 233 683353520 683353292 5.940000e-82 315.0
33 TraesCS6D01G233600 chr3A 77.596 366 59 16 1110 1473 177710508 177710164 1.740000e-47 200.0
34 TraesCS6D01G233600 chr5B 83.453 139 15 7 1687 1817 146829249 146829387 3.860000e-24 122.0
35 TraesCS6D01G233600 chr5B 84.722 72 11 0 2590 2661 418322479 418322408 3.950000e-09 73.1
36 TraesCS6D01G233600 chr1B 82.639 144 17 4 1685 1820 208443186 208443329 1.390000e-23 121.0
37 TraesCS6D01G233600 chr5D 89.286 84 1 2 1683 1758 443504296 443504213 6.510000e-17 99.0
38 TraesCS6D01G233600 chr1A 78.571 140 22 3 1685 1816 492195751 492195890 5.070000e-13 86.1
39 TraesCS6D01G233600 chr2A 85.135 74 11 0 2588 2661 37947481 37947408 3.050000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G233600 chr6D 327598228 327601083 2855 True 5275.000000 5275 100.000000 1 2856 1 chr6D.!!$R1 2855
1 TraesCS6D01G233600 chr6B 491603158 491605639 2481 True 652.400000 2102 91.474800 231 2856 5 chr6B.!!$R2 2625
2 TraesCS6D01G233600 chr6A 466649008 466659206 10198 True 427.272727 1315 94.106545 261 2856 11 chr6A.!!$R2 2595
3 TraesCS6D01G233600 chr6A 466627795 466630881 3086 True 320.000000 375 89.366333 2223 2855 3 chr6A.!!$R1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
402 403 0.038890 TTCATCGCAACCATTCCCCA 59.961 50.0 0.0 0.0 0.0 4.96 F
1750 4950 0.251297 CCTGTTTGCCCACTCCATGA 60.251 55.0 0.0 0.0 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1778 4978 0.038159 CCACTCCACGACTCAACTCC 60.038 60.0 0.0 0.0 0.0 3.85 R
2741 8968 1.120530 ATAGACCTAACACGCCTGGG 58.879 55.0 0.0 0.0 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.637521 TAGCCTACCGCCATAGACG 58.362 57.895 0.00 0.00 38.78 4.18
42 43 2.594592 GCAGGTCCTTTGCCACGT 60.595 61.111 0.00 0.00 35.54 4.49
43 44 2.908073 GCAGGTCCTTTGCCACGTG 61.908 63.158 9.08 9.08 35.54 4.49
44 45 1.525995 CAGGTCCTTTGCCACGTGT 60.526 57.895 15.65 0.00 0.00 4.49
45 46 0.250124 CAGGTCCTTTGCCACGTGTA 60.250 55.000 15.65 0.00 0.00 2.90
48 49 0.584876 GTCCTTTGCCACGTGTACAC 59.415 55.000 16.32 16.32 0.00 2.90
59 60 1.774727 GTGTACACGGCCGTTAACG 59.225 57.895 32.11 20.55 39.44 3.18
69 70 3.484547 CGTTAACGGCGGCCAGAC 61.485 66.667 20.24 10.05 35.37 3.51
81 82 3.691342 CCAGACGGCGTCAGGGAA 61.691 66.667 35.37 0.00 35.90 3.97
82 83 2.432628 CAGACGGCGTCAGGGAAC 60.433 66.667 37.71 13.52 34.60 3.62
96 97 1.595357 GGAACCTACCACCACGAGG 59.405 63.158 0.00 0.00 42.21 4.63
97 98 1.595357 GAACCTACCACCACGAGGG 59.405 63.158 3.29 0.00 44.81 4.30
98 99 1.896122 GAACCTACCACCACGAGGGG 61.896 65.000 3.29 0.00 42.91 4.79
120 121 0.460311 GCGGTAGCCTGTACACATCT 59.540 55.000 0.00 0.00 37.42 2.90
121 122 1.679680 GCGGTAGCCTGTACACATCTA 59.320 52.381 0.00 0.00 37.42 1.98
122 123 2.543238 GCGGTAGCCTGTACACATCTAC 60.543 54.545 12.54 12.54 37.42 2.59
123 124 2.034305 CGGTAGCCTGTACACATCTACC 59.966 54.545 21.95 21.95 42.34 3.18
124 125 2.034305 GGTAGCCTGTACACATCTACCG 59.966 54.545 19.44 0.00 39.66 4.02
125 126 0.460311 AGCCTGTACACATCTACCGC 59.540 55.000 0.00 0.00 0.00 5.68
126 127 0.529992 GCCTGTACACATCTACCGCC 60.530 60.000 0.00 0.00 0.00 6.13
128 129 0.248907 CTGTACACATCTACCGCCGG 60.249 60.000 0.00 0.00 0.00 6.13
130 131 0.526954 GTACACATCTACCGCCGGTG 60.527 60.000 21.20 8.42 36.19 4.94
131 132 0.966875 TACACATCTACCGCCGGTGT 60.967 55.000 21.20 9.68 44.20 4.16
132 133 1.518572 CACATCTACCGCCGGTGTC 60.519 63.158 21.20 0.00 36.19 3.67
157 158 3.782889 GCGGTAGCAAAAGGATCAAAT 57.217 42.857 0.00 0.00 44.35 2.32
158 159 3.695816 GCGGTAGCAAAAGGATCAAATC 58.304 45.455 0.00 0.00 44.35 2.17
159 160 3.378427 GCGGTAGCAAAAGGATCAAATCT 59.622 43.478 0.00 0.00 44.35 2.40
160 161 4.496507 GCGGTAGCAAAAGGATCAAATCTC 60.497 45.833 0.00 0.00 44.35 2.75
161 162 4.260375 CGGTAGCAAAAGGATCAAATCTCG 60.260 45.833 0.00 0.00 0.00 4.04
162 163 4.876107 GGTAGCAAAAGGATCAAATCTCGA 59.124 41.667 0.00 0.00 0.00 4.04
163 164 5.354234 GGTAGCAAAAGGATCAAATCTCGAA 59.646 40.000 0.00 0.00 0.00 3.71
165 166 6.331369 AGCAAAAGGATCAAATCTCGAAAA 57.669 33.333 0.00 0.00 0.00 2.29
166 167 6.928520 AGCAAAAGGATCAAATCTCGAAAAT 58.071 32.000 0.00 0.00 0.00 1.82
167 168 7.381323 AGCAAAAGGATCAAATCTCGAAAATT 58.619 30.769 0.00 0.00 0.00 1.82
168 169 7.874528 AGCAAAAGGATCAAATCTCGAAAATTT 59.125 29.630 0.00 0.74 0.00 1.82
169 170 8.498358 GCAAAAGGATCAAATCTCGAAAATTTT 58.502 29.630 2.28 2.28 0.00 1.82
171 172 8.763049 AAAGGATCAAATCTCGAAAATTTTCC 57.237 30.769 22.15 7.10 33.68 3.13
172 173 7.466746 AGGATCAAATCTCGAAAATTTTCCA 57.533 32.000 22.15 11.18 30.44 3.53
173 174 8.071177 AGGATCAAATCTCGAAAATTTTCCAT 57.929 30.769 22.15 10.93 30.44 3.41
175 176 9.801873 GGATCAAATCTCGAAAATTTTCCATAA 57.198 29.630 22.15 8.42 33.68 1.90
178 179 9.624697 TCAAATCTCGAAAATTTTCCATAACAG 57.375 29.630 22.15 8.86 33.68 3.16
179 180 9.624697 CAAATCTCGAAAATTTTCCATAACAGA 57.375 29.630 22.15 14.29 33.68 3.41
181 182 7.979444 TCTCGAAAATTTTCCATAACAGAGT 57.021 32.000 22.15 0.00 33.68 3.24
182 183 8.029642 TCTCGAAAATTTTCCATAACAGAGTC 57.970 34.615 22.15 0.00 33.68 3.36
184 185 7.806690 TCGAAAATTTTCCATAACAGAGTCAG 58.193 34.615 22.15 5.99 33.68 3.51
185 186 7.659799 TCGAAAATTTTCCATAACAGAGTCAGA 59.340 33.333 22.15 7.97 33.68 3.27
186 187 8.454106 CGAAAATTTTCCATAACAGAGTCAGAT 58.546 33.333 22.15 0.00 33.68 2.90
188 189 9.525826 AAAATTTTCCATAACAGAGTCAGATCT 57.474 29.630 0.00 0.00 0.00 2.75
191 192 4.781934 TCCATAACAGAGTCAGATCTCGA 58.218 43.478 0.00 0.00 39.21 4.04
192 193 5.380900 TCCATAACAGAGTCAGATCTCGAT 58.619 41.667 0.00 0.00 39.21 3.59
193 194 5.830457 TCCATAACAGAGTCAGATCTCGATT 59.170 40.000 0.00 0.00 39.21 3.34
196 197 8.138074 CCATAACAGAGTCAGATCTCGATTTTA 58.862 37.037 0.00 0.00 39.21 1.52
197 198 9.179552 CATAACAGAGTCAGATCTCGATTTTAG 57.820 37.037 0.00 0.00 39.21 1.85
198 199 7.397892 AACAGAGTCAGATCTCGATTTTAGA 57.602 36.000 0.00 0.00 39.21 2.10
199 200 6.791303 ACAGAGTCAGATCTCGATTTTAGAC 58.209 40.000 0.00 0.00 39.21 2.59
200 201 5.906838 CAGAGTCAGATCTCGATTTTAGACG 59.093 44.000 0.00 0.00 39.21 4.18
201 202 5.587043 AGAGTCAGATCTCGATTTTAGACGT 59.413 40.000 0.00 0.00 39.21 4.34
202 203 5.574082 AGTCAGATCTCGATTTTAGACGTG 58.426 41.667 0.00 0.00 0.00 4.49
203 204 5.354513 AGTCAGATCTCGATTTTAGACGTGA 59.645 40.000 0.00 0.00 36.70 4.35
204 205 6.028368 GTCAGATCTCGATTTTAGACGTGAA 58.972 40.000 0.00 0.00 36.09 3.18
206 207 7.061905 GTCAGATCTCGATTTTAGACGTGAAAA 59.938 37.037 0.00 0.00 36.09 2.29
207 208 7.273598 TCAGATCTCGATTTTAGACGTGAAAAG 59.726 37.037 0.00 0.00 36.09 2.27
208 209 6.531948 AGATCTCGATTTTAGACGTGAAAAGG 59.468 38.462 0.00 0.00 36.09 3.11
210 211 4.634199 TCGATTTTAGACGTGAAAAGGGT 58.366 39.130 0.00 0.00 0.00 4.34
211 212 4.687483 TCGATTTTAGACGTGAAAAGGGTC 59.313 41.667 0.00 0.00 0.00 4.46
212 213 4.449743 CGATTTTAGACGTGAAAAGGGTCA 59.550 41.667 0.00 0.00 33.18 4.02
213 214 5.049954 CGATTTTAGACGTGAAAAGGGTCAA 60.050 40.000 0.00 0.00 33.18 3.18
215 216 6.512342 TTTTAGACGTGAAAAGGGTCAAAA 57.488 33.333 0.00 0.00 33.18 2.44
216 217 5.488645 TTAGACGTGAAAAGGGTCAAAAC 57.511 39.130 0.00 0.00 33.18 2.43
217 218 3.349022 AGACGTGAAAAGGGTCAAAACA 58.651 40.909 0.00 0.00 33.18 2.83
219 220 2.446282 CGTGAAAAGGGTCAAAACACG 58.554 47.619 0.00 0.00 42.04 4.49
220 221 3.768468 GTGAAAAGGGTCAAAACACGA 57.232 42.857 0.00 0.00 32.44 4.35
221 222 4.099380 GTGAAAAGGGTCAAAACACGAA 57.901 40.909 0.00 0.00 32.44 3.85
222 223 4.487019 GTGAAAAGGGTCAAAACACGAAA 58.513 39.130 0.00 0.00 32.44 3.46
224 225 5.579119 GTGAAAAGGGTCAAAACACGAAATT 59.421 36.000 0.00 0.00 32.44 1.82
227 228 6.415798 AAAGGGTCAAAACACGAAATTTTG 57.584 33.333 3.73 3.73 44.74 2.44
228 229 3.868661 AGGGTCAAAACACGAAATTTTGC 59.131 39.130 5.27 11.02 43.62 3.68
230 231 3.001838 GGTCAAAACACGAAATTTTGCCC 59.998 43.478 5.27 11.08 43.62 5.36
231 232 3.001838 GTCAAAACACGAAATTTTGCCCC 59.998 43.478 5.27 5.80 43.62 5.80
232 233 3.118592 TCAAAACACGAAATTTTGCCCCT 60.119 39.130 5.27 0.00 43.62 4.79
396 397 2.159531 CGTGACAATTCATCGCAACCAT 60.160 45.455 1.79 0.00 33.11 3.55
402 403 0.038890 TTCATCGCAACCATTCCCCA 59.961 50.000 0.00 0.00 0.00 4.96
470 1818 2.915659 ACACGCTCCTTCCGGTGA 60.916 61.111 0.00 0.00 0.00 4.02
570 1918 5.102313 TCTGAAAGTACAGACGCATACATG 58.898 41.667 0.00 0.00 41.21 3.21
627 1977 6.041751 ACAAGGCCTCACCATATACTAACTAC 59.958 42.308 5.23 0.00 43.14 2.73
628 1978 4.765856 AGGCCTCACCATATACTAACTACG 59.234 45.833 0.00 0.00 43.14 3.51
646 1996 5.967088 ACTACGTTCAATACTCAGAGCAAT 58.033 37.500 0.00 0.00 0.00 3.56
703 2053 5.560966 TTGTGGGCGAAATATTTTCTCTC 57.439 39.130 1.43 0.25 0.00 3.20
708 2058 5.129485 TGGGCGAAATATTTTCTCTCTCTCT 59.871 40.000 1.43 0.00 0.00 3.10
710 2060 6.462347 GGGCGAAATATTTTCTCTCTCTCTCT 60.462 42.308 1.43 0.00 0.00 3.10
711 2061 6.640907 GGCGAAATATTTTCTCTCTCTCTCTC 59.359 42.308 1.43 0.00 0.00 3.20
712 2062 7.425606 GCGAAATATTTTCTCTCTCTCTCTCT 58.574 38.462 1.43 0.00 0.00 3.10
713 2063 7.591426 GCGAAATATTTTCTCTCTCTCTCTCTC 59.409 40.741 1.43 0.00 0.00 3.20
714 2064 8.076178 CGAAATATTTTCTCTCTCTCTCTCTCC 58.924 40.741 1.43 0.00 0.00 3.71
715 2065 7.839680 AATATTTTCTCTCTCTCTCTCTCCC 57.160 40.000 0.00 0.00 0.00 4.30
754 2379 2.760799 GCATGGCATGGCAGGGAA 60.761 61.111 31.26 7.38 0.00 3.97
765 2390 2.669569 CAGGGAACGGCACTGGTG 60.670 66.667 2.18 0.00 44.59 4.17
865 2490 3.767673 TCACCCGCAACTAACTAATCTCT 59.232 43.478 0.00 0.00 0.00 3.10
866 2491 4.222145 TCACCCGCAACTAACTAATCTCTT 59.778 41.667 0.00 0.00 0.00 2.85
867 2492 4.935808 CACCCGCAACTAACTAATCTCTTT 59.064 41.667 0.00 0.00 0.00 2.52
868 2493 5.411669 CACCCGCAACTAACTAATCTCTTTT 59.588 40.000 0.00 0.00 0.00 2.27
1301 4499 2.923854 CGATGCGCGTCAAGATCC 59.076 61.111 27.92 1.15 34.64 3.36
1428 4626 3.843240 CGCGAAGAAGCAGACGGC 61.843 66.667 0.00 0.00 45.30 5.68
1524 4722 7.045693 AGGATATCTACAGCTAGATAACCCA 57.954 40.000 20.97 0.47 46.69 4.51
1565 4763 2.607635 CGGTTTGCATGTATAGCTTCGT 59.392 45.455 0.00 0.00 0.00 3.85
1577 4775 1.917872 AGCTTCGTTGGTCTCTCTCT 58.082 50.000 0.00 0.00 0.00 3.10
1578 4776 1.543802 AGCTTCGTTGGTCTCTCTCTG 59.456 52.381 0.00 0.00 0.00 3.35
1687 4887 7.795272 GCAACTTTGAAATGTCAGCAATTTTAG 59.205 33.333 0.00 0.00 34.49 1.85
1688 4888 7.951530 ACTTTGAAATGTCAGCAATTTTAGG 57.048 32.000 0.00 0.00 34.49 2.69
1689 4889 6.424812 ACTTTGAAATGTCAGCAATTTTAGGC 59.575 34.615 0.00 0.00 34.49 3.93
1690 4890 4.819769 TGAAATGTCAGCAATTTTAGGCC 58.180 39.130 0.00 0.00 0.00 5.19
1691 4891 3.893326 AATGTCAGCAATTTTAGGCCC 57.107 42.857 0.00 0.00 0.00 5.80
1692 4892 2.603075 TGTCAGCAATTTTAGGCCCT 57.397 45.000 0.00 0.00 0.00 5.19
1693 4893 2.170166 TGTCAGCAATTTTAGGCCCTG 58.830 47.619 0.00 0.00 0.00 4.45
1694 4894 2.171003 GTCAGCAATTTTAGGCCCTGT 58.829 47.619 0.00 0.00 0.00 4.00
1695 4895 2.562738 GTCAGCAATTTTAGGCCCTGTT 59.437 45.455 0.00 0.00 0.00 3.16
1696 4896 2.825532 TCAGCAATTTTAGGCCCTGTTC 59.174 45.455 0.00 0.00 0.00 3.18
1697 4897 1.818674 AGCAATTTTAGGCCCTGTTCG 59.181 47.619 0.00 0.00 0.00 3.95
1698 4898 1.135112 GCAATTTTAGGCCCTGTTCGG 60.135 52.381 0.00 0.00 0.00 4.30
1706 4906 3.655481 CCCTGTTCGGCACTTCAC 58.345 61.111 0.00 0.00 0.00 3.18
1707 4907 1.966451 CCCTGTTCGGCACTTCACC 60.966 63.158 0.00 0.00 0.00 4.02
1708 4908 1.227823 CCTGTTCGGCACTTCACCA 60.228 57.895 0.00 0.00 0.00 4.17
1709 4909 1.230635 CCTGTTCGGCACTTCACCAG 61.231 60.000 0.00 0.00 0.00 4.00
1710 4910 1.845809 CTGTTCGGCACTTCACCAGC 61.846 60.000 0.00 0.00 0.00 4.85
1711 4911 1.598130 GTTCGGCACTTCACCAGCT 60.598 57.895 0.00 0.00 0.00 4.24
1712 4912 1.301716 TTCGGCACTTCACCAGCTC 60.302 57.895 0.00 0.00 0.00 4.09
1713 4913 2.731691 TTCGGCACTTCACCAGCTCC 62.732 60.000 0.00 0.00 0.00 4.70
1714 4914 2.743928 GGCACTTCACCAGCTCCG 60.744 66.667 0.00 0.00 0.00 4.63
1715 4915 3.426568 GCACTTCACCAGCTCCGC 61.427 66.667 0.00 0.00 0.00 5.54
1716 4916 2.031012 CACTTCACCAGCTCCGCA 59.969 61.111 0.00 0.00 0.00 5.69
1717 4917 2.031516 CACTTCACCAGCTCCGCAG 61.032 63.158 0.00 0.00 0.00 5.18
1718 4918 2.210013 ACTTCACCAGCTCCGCAGA 61.210 57.895 0.00 0.00 0.00 4.26
1719 4919 1.004560 CTTCACCAGCTCCGCAGAA 60.005 57.895 0.00 0.00 0.00 3.02
1720 4920 0.392193 CTTCACCAGCTCCGCAGAAT 60.392 55.000 0.00 0.00 0.00 2.40
1721 4921 0.391661 TTCACCAGCTCCGCAGAATC 60.392 55.000 0.00 0.00 0.00 2.52
1722 4922 1.220206 CACCAGCTCCGCAGAATCT 59.780 57.895 0.00 0.00 0.00 2.40
1723 4923 1.088340 CACCAGCTCCGCAGAATCTG 61.088 60.000 5.78 5.78 34.12 2.90
1735 4935 3.185246 CAGAATCTGCGGAATACCTGT 57.815 47.619 0.00 0.00 0.00 4.00
1736 4936 3.535561 CAGAATCTGCGGAATACCTGTT 58.464 45.455 0.00 0.00 0.00 3.16
1737 4937 3.941483 CAGAATCTGCGGAATACCTGTTT 59.059 43.478 0.00 0.00 0.00 2.83
1738 4938 3.941483 AGAATCTGCGGAATACCTGTTTG 59.059 43.478 0.00 0.00 0.00 2.93
1739 4939 1.448985 TCTGCGGAATACCTGTTTGC 58.551 50.000 0.00 0.00 0.00 3.68
1740 4940 0.451783 CTGCGGAATACCTGTTTGCC 59.548 55.000 0.00 0.00 0.00 4.52
1741 4941 0.963355 TGCGGAATACCTGTTTGCCC 60.963 55.000 0.00 0.00 0.00 5.36
1742 4942 0.963355 GCGGAATACCTGTTTGCCCA 60.963 55.000 0.00 0.00 0.00 5.36
1743 4943 0.808755 CGGAATACCTGTTTGCCCAC 59.191 55.000 0.00 0.00 0.00 4.61
1744 4944 1.613255 CGGAATACCTGTTTGCCCACT 60.613 52.381 0.00 0.00 0.00 4.00
1745 4945 2.092323 GGAATACCTGTTTGCCCACTC 58.908 52.381 0.00 0.00 0.00 3.51
1746 4946 2.092323 GAATACCTGTTTGCCCACTCC 58.908 52.381 0.00 0.00 0.00 3.85
1747 4947 1.072266 ATACCTGTTTGCCCACTCCA 58.928 50.000 0.00 0.00 0.00 3.86
1748 4948 1.072266 TACCTGTTTGCCCACTCCAT 58.928 50.000 0.00 0.00 0.00 3.41
1749 4949 0.540365 ACCTGTTTGCCCACTCCATG 60.540 55.000 0.00 0.00 0.00 3.66
1750 4950 0.251297 CCTGTTTGCCCACTCCATGA 60.251 55.000 0.00 0.00 0.00 3.07
1751 4951 1.617804 CCTGTTTGCCCACTCCATGAT 60.618 52.381 0.00 0.00 0.00 2.45
1752 4952 2.173519 CTGTTTGCCCACTCCATGATT 58.826 47.619 0.00 0.00 0.00 2.57
1753 4953 2.564062 CTGTTTGCCCACTCCATGATTT 59.436 45.455 0.00 0.00 0.00 2.17
1754 4954 2.971330 TGTTTGCCCACTCCATGATTTT 59.029 40.909 0.00 0.00 0.00 1.82
1755 4955 3.390639 TGTTTGCCCACTCCATGATTTTT 59.609 39.130 0.00 0.00 0.00 1.94
1756 4956 4.590647 TGTTTGCCCACTCCATGATTTTTA 59.409 37.500 0.00 0.00 0.00 1.52
1757 4957 5.070981 TGTTTGCCCACTCCATGATTTTTAA 59.929 36.000 0.00 0.00 0.00 1.52
1758 4958 4.799564 TGCCCACTCCATGATTTTTAAC 57.200 40.909 0.00 0.00 0.00 2.01
1759 4959 4.415596 TGCCCACTCCATGATTTTTAACT 58.584 39.130 0.00 0.00 0.00 2.24
1760 4960 5.575157 TGCCCACTCCATGATTTTTAACTA 58.425 37.500 0.00 0.00 0.00 2.24
1761 4961 5.417580 TGCCCACTCCATGATTTTTAACTAC 59.582 40.000 0.00 0.00 0.00 2.73
1762 4962 5.448632 GCCCACTCCATGATTTTTAACTACG 60.449 44.000 0.00 0.00 0.00 3.51
1763 4963 5.065988 CCCACTCCATGATTTTTAACTACGG 59.934 44.000 0.00 0.00 0.00 4.02
1764 4964 5.448632 CCACTCCATGATTTTTAACTACGGC 60.449 44.000 0.00 0.00 0.00 5.68
1765 4965 5.354234 CACTCCATGATTTTTAACTACGGCT 59.646 40.000 0.00 0.00 0.00 5.52
1766 4966 5.354234 ACTCCATGATTTTTAACTACGGCTG 59.646 40.000 0.00 0.00 0.00 4.85
1767 4967 4.095782 TCCATGATTTTTAACTACGGCTGC 59.904 41.667 0.00 0.00 0.00 5.25
1768 4968 3.733024 TGATTTTTAACTACGGCTGCG 57.267 42.857 0.00 0.00 0.00 5.18
1769 4969 2.417239 TGATTTTTAACTACGGCTGCGG 59.583 45.455 5.60 5.60 0.00 5.69
1770 4970 0.518195 TTTTTAACTACGGCTGCGGC 59.482 50.000 9.72 9.72 37.82 6.53
1781 4981 3.121030 CTGCGGCCGTTTCAGGAG 61.121 66.667 28.70 3.22 0.00 3.69
1782 4982 3.883744 CTGCGGCCGTTTCAGGAGT 62.884 63.158 28.70 0.00 0.00 3.85
1783 4983 2.668550 GCGGCCGTTTCAGGAGTT 60.669 61.111 28.70 0.00 0.00 3.01
1784 4984 2.966309 GCGGCCGTTTCAGGAGTTG 61.966 63.158 28.70 0.00 0.00 3.16
1785 4985 1.301401 CGGCCGTTTCAGGAGTTGA 60.301 57.895 19.50 0.00 0.00 3.18
1786 4986 1.291877 CGGCCGTTTCAGGAGTTGAG 61.292 60.000 19.50 0.00 37.07 3.02
1787 4987 0.250338 GGCCGTTTCAGGAGTTGAGT 60.250 55.000 0.00 0.00 37.07 3.41
1788 4988 1.149148 GCCGTTTCAGGAGTTGAGTC 58.851 55.000 0.00 0.00 37.07 3.36
1789 4989 1.419374 CCGTTTCAGGAGTTGAGTCG 58.581 55.000 0.00 0.00 37.07 4.18
1790 4990 1.269621 CCGTTTCAGGAGTTGAGTCGT 60.270 52.381 0.00 0.00 37.07 4.34
1791 4991 1.787155 CGTTTCAGGAGTTGAGTCGTG 59.213 52.381 2.86 2.86 37.07 4.35
1792 4992 2.135933 GTTTCAGGAGTTGAGTCGTGG 58.864 52.381 8.24 0.00 37.07 4.94
1793 4993 1.699730 TTCAGGAGTTGAGTCGTGGA 58.300 50.000 8.24 0.00 37.07 4.02
1794 4994 1.248486 TCAGGAGTTGAGTCGTGGAG 58.752 55.000 8.24 0.00 33.91 3.86
1795 4995 0.962489 CAGGAGTTGAGTCGTGGAGT 59.038 55.000 1.55 0.00 0.00 3.85
1796 4996 0.962489 AGGAGTTGAGTCGTGGAGTG 59.038 55.000 0.00 0.00 0.00 3.51
1797 4997 0.038159 GGAGTTGAGTCGTGGAGTGG 60.038 60.000 0.00 0.00 0.00 4.00
1798 4998 0.959553 GAGTTGAGTCGTGGAGTGGA 59.040 55.000 0.00 0.00 0.00 4.02
1799 4999 0.962489 AGTTGAGTCGTGGAGTGGAG 59.038 55.000 0.00 0.00 0.00 3.86
1800 5000 0.667792 GTTGAGTCGTGGAGTGGAGC 60.668 60.000 0.00 0.00 0.00 4.70
1801 5001 2.142357 TTGAGTCGTGGAGTGGAGCG 62.142 60.000 0.00 0.00 0.00 5.03
1802 5002 3.973267 GAGTCGTGGAGTGGAGCGC 62.973 68.421 0.00 0.00 0.00 5.92
1805 5005 4.803426 CGTGGAGTGGAGCGCCTC 62.803 72.222 8.34 3.83 37.96 4.70
1813 5013 4.821589 GGAGCGCCTCCGAACAGG 62.822 72.222 2.29 0.00 41.08 4.00
1814 5014 4.821589 GAGCGCCTCCGAACAGGG 62.822 72.222 2.29 0.00 41.52 4.45
1817 5017 4.394712 CGCCTCCGAACAGGGCTT 62.395 66.667 0.00 0.00 43.29 4.35
1818 5018 2.034221 GCCTCCGAACAGGGCTTT 59.966 61.111 0.00 0.00 42.31 3.51
1819 5019 1.298667 GCCTCCGAACAGGGCTTTA 59.701 57.895 0.00 0.00 42.31 1.85
1820 5020 0.744771 GCCTCCGAACAGGGCTTTAG 60.745 60.000 0.00 0.00 42.31 1.85
1838 5040 5.447818 GCTTTAGTCTGACATTTTGGATCCG 60.448 44.000 10.88 0.00 0.00 4.18
1839 5041 3.703001 AGTCTGACATTTTGGATCCGT 57.297 42.857 10.88 0.00 0.00 4.69
1848 5092 1.515081 TTTGGATCCGTTGGACGAAC 58.485 50.000 7.39 0.00 46.05 3.95
1973 5257 2.123428 GGGCAGCTGGAAATGCGAT 61.123 57.895 17.12 0.00 43.49 4.58
2001 5337 4.213270 CGAAAAGAGTTTACAGTCATGGCA 59.787 41.667 0.00 0.00 0.00 4.92
2055 5391 0.734309 CATGCATGCCAGCGTCTTAA 59.266 50.000 14.93 0.00 37.31 1.85
2079 5415 3.071479 GGATTCGCTTCAGTGTTGGTTA 58.929 45.455 0.00 0.00 0.00 2.85
2113 5449 2.030096 TCGAGTGTGGTTAATGTACGCA 60.030 45.455 0.00 0.00 0.00 5.24
2184 5520 2.355756 GTCGTTCGCATAGGTGGTACTA 59.644 50.000 0.00 0.00 0.00 1.82
2199 5535 3.956199 TGGTACTAGTACATAGTGGTGCC 59.044 47.826 29.38 12.34 44.69 5.01
2219 5555 2.351244 TGGCGTTTGTTGTGGGCAA 61.351 52.632 0.00 0.00 31.59 4.52
2285 5660 4.058124 CCAAAGGGCAAGAAGTTAAAAGC 58.942 43.478 0.00 0.00 0.00 3.51
2348 5723 5.198274 GCTTACAGTGAAAAGTATATGCGC 58.802 41.667 0.00 0.00 0.00 6.09
2426 5801 4.671377 TCTGCTTTAAACACTGTTTGCTG 58.329 39.130 16.09 13.96 0.00 4.41
2437 7641 2.287788 ACTGTTTGCTGTGCTGTTATGC 60.288 45.455 0.00 0.00 0.00 3.14
2517 8722 3.945981 TTTTTGCGGGGTAGAAAATCC 57.054 42.857 0.00 0.00 0.00 3.01
2518 8723 2.588464 TTTGCGGGGTAGAAAATCCA 57.412 45.000 0.00 0.00 0.00 3.41
2519 8724 2.818751 TTGCGGGGTAGAAAATCCAT 57.181 45.000 0.00 0.00 0.00 3.41
2520 8725 2.051334 TGCGGGGTAGAAAATCCATG 57.949 50.000 0.00 0.00 0.00 3.66
2521 8726 1.318576 GCGGGGTAGAAAATCCATGG 58.681 55.000 4.97 4.97 0.00 3.66
2522 8727 1.409661 GCGGGGTAGAAAATCCATGGT 60.410 52.381 12.58 0.00 0.00 3.55
2523 8728 2.158726 GCGGGGTAGAAAATCCATGGTA 60.159 50.000 12.58 0.00 0.00 3.25
2524 8729 3.497942 GCGGGGTAGAAAATCCATGGTAT 60.498 47.826 12.58 0.98 0.00 2.73
2525 8730 4.725490 CGGGGTAGAAAATCCATGGTATT 58.275 43.478 12.58 7.57 0.00 1.89
2526 8731 5.137551 CGGGGTAGAAAATCCATGGTATTT 58.862 41.667 12.58 13.80 0.00 1.40
2527 8732 5.009610 CGGGGTAGAAAATCCATGGTATTTG 59.990 44.000 18.09 4.55 0.00 2.32
2584 8789 6.069331 TGGTGGAATATACTGAGGACTACTC 58.931 44.000 0.00 0.00 46.78 2.59
2585 8790 5.477637 GGTGGAATATACTGAGGACTACTCC 59.522 48.000 0.00 0.00 46.01 3.85
2633 8838 7.233757 ACTTTTTACCCCATAGTTGTGCATTTA 59.766 33.333 0.00 0.00 0.00 1.40
2637 8842 5.457686 ACCCCATAGTTGTGCATTTATGAT 58.542 37.500 0.00 0.00 0.00 2.45
2741 8968 6.373779 CATTCCGCATGTTCCATTAGAATAC 58.626 40.000 0.00 0.00 36.69 1.89
2744 8971 4.133820 CGCATGTTCCATTAGAATACCCA 58.866 43.478 0.00 0.00 36.69 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.892358 CCGTCTATGGCGGTAGGCTA 60.892 60.000 2.11 0.00 43.84 3.93
1 2 2.201022 CCGTCTATGGCGGTAGGCT 61.201 63.158 2.11 0.00 43.84 4.58
2 3 2.338984 CCGTCTATGGCGGTAGGC 59.661 66.667 2.11 0.00 43.84 3.93
25 26 2.594592 ACGTGGCAAAGGACCTGC 60.595 61.111 0.00 0.00 39.16 4.85
27 28 0.250166 GTACACGTGGCAAAGGACCT 60.250 55.000 21.57 0.00 0.00 3.85
28 29 0.533308 TGTACACGTGGCAAAGGACC 60.533 55.000 21.57 0.00 0.00 4.46
29 30 0.584876 GTGTACACGTGGCAAAGGAC 59.415 55.000 21.57 6.39 0.00 3.85
40 41 1.932938 CGTTAACGGCCGTGTACACG 61.933 60.000 35.57 35.57 43.96 4.49
41 42 1.774727 CGTTAACGGCCGTGTACAC 59.225 57.895 34.95 23.22 35.37 2.90
42 43 4.241715 CGTTAACGGCCGTGTACA 57.758 55.556 34.95 15.01 35.37 2.90
52 53 3.484547 GTCTGGCCGCCGTTAACG 61.485 66.667 20.99 20.99 39.44 3.18
53 54 3.484547 CGTCTGGCCGCCGTTAAC 61.485 66.667 4.58 0.00 0.00 2.01
54 55 4.745751 CCGTCTGGCCGCCGTTAA 62.746 66.667 4.58 0.00 0.00 2.01
64 65 3.691342 TTCCCTGACGCCGTCTGG 61.691 66.667 29.64 29.64 46.58 3.86
65 66 2.432628 GTTCCCTGACGCCGTCTG 60.433 66.667 19.12 17.52 33.15 3.51
66 67 2.776370 TAGGTTCCCTGACGCCGTCT 62.776 60.000 19.12 0.00 34.61 4.18
67 68 2.345760 TAGGTTCCCTGACGCCGTC 61.346 63.158 10.96 10.96 34.61 4.79
68 69 2.283388 TAGGTTCCCTGACGCCGT 60.283 61.111 0.00 0.00 34.61 5.68
69 70 2.183555 GTAGGTTCCCTGACGCCG 59.816 66.667 0.00 0.00 34.61 6.46
70 71 2.288025 TGGTAGGTTCCCTGACGCC 61.288 63.158 0.00 0.00 34.61 5.68
71 72 1.079336 GTGGTAGGTTCCCTGACGC 60.079 63.158 0.00 0.00 34.61 5.19
72 73 1.189524 TGGTGGTAGGTTCCCTGACG 61.190 60.000 0.00 0.00 34.61 4.35
73 74 0.323957 GTGGTGGTAGGTTCCCTGAC 59.676 60.000 0.00 0.00 34.61 3.51
74 75 1.189524 CGTGGTGGTAGGTTCCCTGA 61.190 60.000 0.00 0.00 34.61 3.86
75 76 1.189524 TCGTGGTGGTAGGTTCCCTG 61.190 60.000 0.00 0.00 34.61 4.45
76 77 0.903454 CTCGTGGTGGTAGGTTCCCT 60.903 60.000 0.00 0.00 37.71 4.20
78 79 1.595357 CCTCGTGGTGGTAGGTTCC 59.405 63.158 0.00 0.00 0.00 3.62
79 80 1.595357 CCCTCGTGGTGGTAGGTTC 59.405 63.158 2.33 0.00 0.00 3.62
80 81 1.916777 CCCCTCGTGGTGGTAGGTT 60.917 63.158 2.33 0.00 0.00 3.50
81 82 2.284405 CCCCTCGTGGTGGTAGGT 60.284 66.667 2.33 0.00 0.00 3.08
82 83 3.782443 GCCCCTCGTGGTGGTAGG 61.782 72.222 2.33 0.00 0.00 3.18
101 102 0.460311 AGATGTGTACAGGCTACCGC 59.540 55.000 0.00 0.00 0.00 5.68
102 103 2.034305 GGTAGATGTGTACAGGCTACCG 59.966 54.545 22.72 0.00 42.51 4.02
103 104 2.034305 CGGTAGATGTGTACAGGCTACC 59.966 54.545 25.05 25.05 45.06 3.18
106 107 0.460311 GCGGTAGATGTGTACAGGCT 59.540 55.000 0.00 0.00 0.00 4.58
107 108 0.529992 GGCGGTAGATGTGTACAGGC 60.530 60.000 0.00 0.00 36.72 4.85
109 110 0.248907 CCGGCGGTAGATGTGTACAG 60.249 60.000 19.97 0.00 0.00 2.74
111 112 0.526954 CACCGGCGGTAGATGTGTAC 60.527 60.000 33.65 0.00 32.11 2.90
112 113 0.966875 ACACCGGCGGTAGATGTGTA 60.967 55.000 33.65 0.00 38.32 2.90
113 114 2.221906 GACACCGGCGGTAGATGTGT 62.222 60.000 33.65 24.05 42.44 3.72
114 115 1.518572 GACACCGGCGGTAGATGTG 60.519 63.158 33.65 20.69 32.11 3.21
116 117 1.065928 GAGACACCGGCGGTAGATG 59.934 63.158 33.65 21.89 32.11 2.90
118 119 2.753043 GGAGACACCGGCGGTAGA 60.753 66.667 33.65 0.00 32.11 2.59
128 129 2.775032 TTTGCTACCGCCGGAGACAC 62.775 60.000 11.71 0.00 34.43 3.67
130 131 1.359459 CTTTTGCTACCGCCGGAGAC 61.359 60.000 11.71 0.00 34.43 3.36
131 132 1.079405 CTTTTGCTACCGCCGGAGA 60.079 57.895 11.71 0.00 34.43 3.71
132 133 2.106683 CCTTTTGCTACCGCCGGAG 61.107 63.158 11.71 0.00 34.43 4.63
136 137 1.459450 TTGATCCTTTTGCTACCGCC 58.541 50.000 0.00 0.00 34.43 6.13
137 138 3.378427 AGATTTGATCCTTTTGCTACCGC 59.622 43.478 0.00 0.00 0.00 5.68
138 139 4.260375 CGAGATTTGATCCTTTTGCTACCG 60.260 45.833 0.00 0.00 0.00 4.02
139 140 4.876107 TCGAGATTTGATCCTTTTGCTACC 59.124 41.667 0.00 0.00 0.00 3.18
141 142 7.447374 TTTTCGAGATTTGATCCTTTTGCTA 57.553 32.000 0.00 0.00 0.00 3.49
142 143 5.964958 TTTCGAGATTTGATCCTTTTGCT 57.035 34.783 0.00 0.00 0.00 3.91
145 146 9.208022 GGAAAATTTTCGAGATTTGATCCTTTT 57.792 29.630 21.53 0.00 38.06 2.27
146 147 8.367156 TGGAAAATTTTCGAGATTTGATCCTTT 58.633 29.630 21.53 3.29 38.06 3.11
147 148 7.895759 TGGAAAATTTTCGAGATTTGATCCTT 58.104 30.769 21.53 3.77 38.06 3.36
149 150 9.801873 TTATGGAAAATTTTCGAGATTTGATCC 57.198 29.630 21.53 14.26 38.06 3.36
153 154 9.624697 TCTGTTATGGAAAATTTTCGAGATTTG 57.375 29.630 21.53 11.48 38.06 2.32
154 155 9.846248 CTCTGTTATGGAAAATTTTCGAGATTT 57.154 29.630 21.53 8.08 38.06 2.17
155 156 9.014297 ACTCTGTTATGGAAAATTTTCGAGATT 57.986 29.630 24.30 12.16 38.06 2.40
156 157 8.567285 ACTCTGTTATGGAAAATTTTCGAGAT 57.433 30.769 24.30 18.11 38.06 2.75
157 158 7.659799 TGACTCTGTTATGGAAAATTTTCGAGA 59.340 33.333 24.30 17.17 38.06 4.04
158 159 7.806690 TGACTCTGTTATGGAAAATTTTCGAG 58.193 34.615 21.53 20.37 38.06 4.04
159 160 7.659799 TCTGACTCTGTTATGGAAAATTTTCGA 59.340 33.333 21.53 19.12 38.06 3.71
160 161 7.806690 TCTGACTCTGTTATGGAAAATTTTCG 58.193 34.615 21.53 8.64 38.06 3.46
161 162 9.780413 GATCTGACTCTGTTATGGAAAATTTTC 57.220 33.333 20.51 20.51 36.46 2.29
162 163 9.525826 AGATCTGACTCTGTTATGGAAAATTTT 57.474 29.630 2.28 2.28 0.00 1.82
163 164 9.171877 GAGATCTGACTCTGTTATGGAAAATTT 57.828 33.333 0.00 0.00 34.47 1.82
165 166 6.983307 CGAGATCTGACTCTGTTATGGAAAAT 59.017 38.462 0.00 0.00 35.06 1.82
166 167 6.152831 TCGAGATCTGACTCTGTTATGGAAAA 59.847 38.462 0.00 0.00 35.06 2.29
167 168 5.652452 TCGAGATCTGACTCTGTTATGGAAA 59.348 40.000 0.00 0.00 35.06 3.13
168 169 5.193679 TCGAGATCTGACTCTGTTATGGAA 58.806 41.667 0.00 0.00 35.06 3.53
169 170 4.781934 TCGAGATCTGACTCTGTTATGGA 58.218 43.478 0.00 0.00 35.06 3.41
171 172 9.179552 CTAAAATCGAGATCTGACTCTGTTATG 57.820 37.037 0.00 0.00 35.06 1.90
172 173 9.126151 TCTAAAATCGAGATCTGACTCTGTTAT 57.874 33.333 0.00 0.00 35.06 1.89
173 174 8.399425 GTCTAAAATCGAGATCTGACTCTGTTA 58.601 37.037 0.00 0.00 35.06 2.41
175 176 6.457663 CGTCTAAAATCGAGATCTGACTCTGT 60.458 42.308 0.00 0.00 35.06 3.41
177 178 5.587043 ACGTCTAAAATCGAGATCTGACTCT 59.413 40.000 0.00 0.00 35.06 3.24
178 179 5.679355 CACGTCTAAAATCGAGATCTGACTC 59.321 44.000 0.00 0.00 0.00 3.36
179 180 5.354513 TCACGTCTAAAATCGAGATCTGACT 59.645 40.000 0.00 0.00 0.00 3.41
181 182 5.813080 TCACGTCTAAAATCGAGATCTGA 57.187 39.130 0.00 0.00 0.00 3.27
182 183 6.871044 TTTCACGTCTAAAATCGAGATCTG 57.129 37.500 0.00 0.00 0.00 2.90
184 185 6.237861 CCCTTTTCACGTCTAAAATCGAGATC 60.238 42.308 5.95 0.00 0.00 2.75
185 186 5.581085 CCCTTTTCACGTCTAAAATCGAGAT 59.419 40.000 5.95 0.00 0.00 2.75
186 187 4.927425 CCCTTTTCACGTCTAAAATCGAGA 59.073 41.667 5.95 0.00 0.00 4.04
188 189 4.634199 ACCCTTTTCACGTCTAAAATCGA 58.366 39.130 5.95 0.00 0.00 3.59
191 192 6.702716 TTTGACCCTTTTCACGTCTAAAAT 57.297 33.333 5.95 0.00 0.00 1.82
192 193 6.072064 TGTTTTGACCCTTTTCACGTCTAAAA 60.072 34.615 5.49 5.49 34.60 1.52
193 194 5.415077 TGTTTTGACCCTTTTCACGTCTAAA 59.585 36.000 0.00 0.00 31.79 1.85
196 197 3.128068 GTGTTTTGACCCTTTTCACGTCT 59.872 43.478 0.00 0.00 0.00 4.18
197 198 3.431856 GTGTTTTGACCCTTTTCACGTC 58.568 45.455 0.00 0.00 0.00 4.34
198 199 2.159490 CGTGTTTTGACCCTTTTCACGT 60.159 45.455 0.00 0.00 41.01 4.49
199 200 2.096174 TCGTGTTTTGACCCTTTTCACG 59.904 45.455 8.19 8.19 45.10 4.35
200 201 3.768468 TCGTGTTTTGACCCTTTTCAC 57.232 42.857 0.00 0.00 0.00 3.18
201 202 4.785511 TTTCGTGTTTTGACCCTTTTCA 57.214 36.364 0.00 0.00 0.00 2.69
202 203 6.656314 AAATTTCGTGTTTTGACCCTTTTC 57.344 33.333 0.00 0.00 0.00 2.29
203 204 6.621812 GCAAAATTTCGTGTTTTGACCCTTTT 60.622 34.615 19.19 0.00 45.02 2.27
204 205 5.163804 GCAAAATTTCGTGTTTTGACCCTTT 60.164 36.000 19.19 0.00 45.02 3.11
206 207 3.868661 GCAAAATTTCGTGTTTTGACCCT 59.131 39.130 19.19 0.00 45.02 4.34
207 208 3.001838 GGCAAAATTTCGTGTTTTGACCC 59.998 43.478 19.19 11.78 44.81 4.46
208 209 4.190304 GGCAAAATTTCGTGTTTTGACC 57.810 40.909 19.19 16.15 44.81 4.02
210 211 3.118592 AGGGGCAAAATTTCGTGTTTTGA 60.119 39.130 19.19 0.00 45.02 2.69
211 212 3.002144 CAGGGGCAAAATTTCGTGTTTTG 59.998 43.478 14.02 14.02 45.01 2.44
212 213 3.202097 CAGGGGCAAAATTTCGTGTTTT 58.798 40.909 0.00 0.00 0.00 2.43
213 214 2.169561 ACAGGGGCAAAATTTCGTGTTT 59.830 40.909 0.00 0.00 0.00 2.83
215 216 1.339929 GACAGGGGCAAAATTTCGTGT 59.660 47.619 3.45 3.45 0.00 4.49
216 217 1.336795 GGACAGGGGCAAAATTTCGTG 60.337 52.381 0.00 0.00 0.00 4.35
217 218 0.966179 GGACAGGGGCAAAATTTCGT 59.034 50.000 0.00 0.00 0.00 3.85
219 220 1.001974 GGTGGACAGGGGCAAAATTTC 59.998 52.381 0.00 0.00 0.00 2.17
220 221 1.055849 GGTGGACAGGGGCAAAATTT 58.944 50.000 0.00 0.00 0.00 1.82
221 222 0.835971 GGGTGGACAGGGGCAAAATT 60.836 55.000 0.00 0.00 0.00 1.82
222 223 1.229177 GGGTGGACAGGGGCAAAAT 60.229 57.895 0.00 0.00 0.00 1.82
224 225 4.278513 CGGGTGGACAGGGGCAAA 62.279 66.667 0.00 0.00 0.00 3.68
259 260 1.762370 ACCGTCACATATGCCTGATGA 59.238 47.619 14.22 3.59 0.00 2.92
470 1818 2.237392 GGAAGGAATATATCGGCAGGCT 59.763 50.000 0.00 0.00 0.00 4.58
570 1918 3.066369 CATGTGATCATGTGCTTCTGC 57.934 47.619 0.00 0.00 44.37 4.26
627 1977 7.166638 CAGTAGTATTGCTCTGAGTATTGAACG 59.833 40.741 6.53 0.00 0.00 3.95
628 1978 7.436673 CCAGTAGTATTGCTCTGAGTATTGAAC 59.563 40.741 6.53 0.00 0.00 3.18
646 1996 7.891498 TTCTAAGTATGATGCACCAGTAGTA 57.109 36.000 0.00 0.00 0.00 1.82
703 2053 3.255642 GGATTTCATCGGGAGAGAGAGAG 59.744 52.174 0.00 0.00 45.48 3.20
708 2058 3.032265 TCTGGATTTCATCGGGAGAGA 57.968 47.619 0.00 0.00 45.48 3.10
710 2060 3.308401 TGATCTGGATTTCATCGGGAGA 58.692 45.455 0.00 0.00 46.90 3.71
711 2061 3.758755 TGATCTGGATTTCATCGGGAG 57.241 47.619 0.00 0.00 0.00 4.30
712 2062 4.199310 GTTTGATCTGGATTTCATCGGGA 58.801 43.478 0.00 0.00 0.00 5.14
713 2063 3.316308 GGTTTGATCTGGATTTCATCGGG 59.684 47.826 0.00 0.00 0.00 5.14
714 2064 4.036027 CAGGTTTGATCTGGATTTCATCGG 59.964 45.833 0.00 0.00 0.00 4.18
715 2065 4.497006 GCAGGTTTGATCTGGATTTCATCG 60.497 45.833 0.00 0.00 33.16 3.84
761 2386 1.228215 CATGACTGGCACCACACCA 60.228 57.895 0.00 0.00 35.40 4.17
762 2387 0.957395 CTCATGACTGGCACCACACC 60.957 60.000 0.00 0.00 0.00 4.16
763 2388 0.035317 TCTCATGACTGGCACCACAC 59.965 55.000 0.00 0.00 0.00 3.82
764 2389 0.764271 TTCTCATGACTGGCACCACA 59.236 50.000 0.00 0.00 0.00 4.17
765 2390 1.896220 TTTCTCATGACTGGCACCAC 58.104 50.000 0.00 0.00 0.00 4.16
866 2491 9.816354 CTTAGGTGGAATCTTTTTCTTCAAAAA 57.184 29.630 0.00 0.00 38.84 1.94
867 2492 7.926018 GCTTAGGTGGAATCTTTTTCTTCAAAA 59.074 33.333 0.00 0.00 33.12 2.44
868 2493 7.433680 GCTTAGGTGGAATCTTTTTCTTCAAA 58.566 34.615 0.00 0.00 0.00 2.69
1079 4275 1.521580 GCTTCTTGCTCACTTGCTCT 58.478 50.000 0.00 0.00 38.95 4.09
1524 4722 1.817447 GACTACACCACGAAGCTAGGT 59.183 52.381 0.00 0.00 35.65 3.08
1565 4763 4.096382 GCAACAAAAACAGAGAGAGACCAA 59.904 41.667 0.00 0.00 0.00 3.67
1577 4775 2.098443 GGACGAAGAGGCAACAAAAACA 59.902 45.455 0.00 0.00 41.41 2.83
1578 4776 2.357952 AGGACGAAGAGGCAACAAAAAC 59.642 45.455 0.00 0.00 41.41 2.43
1689 4889 1.966451 GGTGAAGTGCCGAACAGGG 60.966 63.158 0.00 0.00 41.48 4.45
1690 4890 1.227823 TGGTGAAGTGCCGAACAGG 60.228 57.895 0.00 0.00 44.97 4.00
1691 4891 1.845809 GCTGGTGAAGTGCCGAACAG 61.846 60.000 0.00 0.00 0.00 3.16
1692 4892 1.891919 GCTGGTGAAGTGCCGAACA 60.892 57.895 0.00 0.00 0.00 3.18
1693 4893 1.569479 GAGCTGGTGAAGTGCCGAAC 61.569 60.000 0.00 0.00 0.00 3.95
1694 4894 1.301716 GAGCTGGTGAAGTGCCGAA 60.302 57.895 0.00 0.00 0.00 4.30
1695 4895 2.343758 GAGCTGGTGAAGTGCCGA 59.656 61.111 0.00 0.00 0.00 5.54
1696 4896 2.743928 GGAGCTGGTGAAGTGCCG 60.744 66.667 0.00 0.00 0.00 5.69
1697 4897 2.743928 CGGAGCTGGTGAAGTGCC 60.744 66.667 0.00 0.00 0.00 5.01
1715 4915 3.185246 ACAGGTATTCCGCAGATTCTG 57.815 47.619 9.40 9.40 39.05 3.02
1716 4916 3.914426 AACAGGTATTCCGCAGATTCT 57.086 42.857 0.00 0.00 39.05 2.40
1717 4917 3.487544 GCAAACAGGTATTCCGCAGATTC 60.488 47.826 0.00 0.00 39.05 2.52
1718 4918 2.423538 GCAAACAGGTATTCCGCAGATT 59.576 45.455 0.00 0.00 39.05 2.40
1719 4919 2.017049 GCAAACAGGTATTCCGCAGAT 58.983 47.619 0.00 0.00 39.05 2.90
1720 4920 1.448985 GCAAACAGGTATTCCGCAGA 58.551 50.000 0.00 0.00 39.05 4.26
1721 4921 0.451783 GGCAAACAGGTATTCCGCAG 59.548 55.000 0.00 0.00 39.05 5.18
1722 4922 0.963355 GGGCAAACAGGTATTCCGCA 60.963 55.000 0.00 0.00 39.05 5.69
1723 4923 0.963355 TGGGCAAACAGGTATTCCGC 60.963 55.000 0.00 0.00 39.05 5.54
1724 4924 0.808755 GTGGGCAAACAGGTATTCCG 59.191 55.000 0.00 0.00 39.05 4.30
1725 4925 2.092323 GAGTGGGCAAACAGGTATTCC 58.908 52.381 0.00 0.00 0.00 3.01
1726 4926 2.092323 GGAGTGGGCAAACAGGTATTC 58.908 52.381 0.00 0.00 0.00 1.75
1727 4927 1.427368 TGGAGTGGGCAAACAGGTATT 59.573 47.619 0.00 0.00 0.00 1.89
1728 4928 1.072266 TGGAGTGGGCAAACAGGTAT 58.928 50.000 0.00 0.00 0.00 2.73
1729 4929 1.072266 ATGGAGTGGGCAAACAGGTA 58.928 50.000 0.00 0.00 0.00 3.08
1730 4930 0.540365 CATGGAGTGGGCAAACAGGT 60.540 55.000 0.00 0.00 0.00 4.00
1731 4931 0.251297 TCATGGAGTGGGCAAACAGG 60.251 55.000 0.00 0.00 0.00 4.00
1732 4932 1.843368 ATCATGGAGTGGGCAAACAG 58.157 50.000 0.00 0.00 0.00 3.16
1733 4933 2.307496 AATCATGGAGTGGGCAAACA 57.693 45.000 0.00 0.00 0.00 2.83
1734 4934 3.683365 AAAATCATGGAGTGGGCAAAC 57.317 42.857 0.00 0.00 0.00 2.93
1735 4935 5.306678 AGTTAAAAATCATGGAGTGGGCAAA 59.693 36.000 0.00 0.00 0.00 3.68
1736 4936 4.837860 AGTTAAAAATCATGGAGTGGGCAA 59.162 37.500 0.00 0.00 0.00 4.52
1737 4937 4.415596 AGTTAAAAATCATGGAGTGGGCA 58.584 39.130 0.00 0.00 0.00 5.36
1738 4938 5.448632 CGTAGTTAAAAATCATGGAGTGGGC 60.449 44.000 0.00 0.00 0.00 5.36
1739 4939 5.065988 CCGTAGTTAAAAATCATGGAGTGGG 59.934 44.000 0.00 0.00 0.00 4.61
1740 4940 5.448632 GCCGTAGTTAAAAATCATGGAGTGG 60.449 44.000 0.00 0.00 0.00 4.00
1741 4941 5.354234 AGCCGTAGTTAAAAATCATGGAGTG 59.646 40.000 0.00 0.00 0.00 3.51
1742 4942 5.354234 CAGCCGTAGTTAAAAATCATGGAGT 59.646 40.000 0.00 0.00 0.00 3.85
1743 4943 5.730568 GCAGCCGTAGTTAAAAATCATGGAG 60.731 44.000 0.00 0.00 0.00 3.86
1744 4944 4.095782 GCAGCCGTAGTTAAAAATCATGGA 59.904 41.667 0.00 0.00 0.00 3.41
1745 4945 4.351192 GCAGCCGTAGTTAAAAATCATGG 58.649 43.478 0.00 0.00 0.00 3.66
1746 4946 4.028383 CGCAGCCGTAGTTAAAAATCATG 58.972 43.478 0.00 0.00 0.00 3.07
1747 4947 3.064820 CCGCAGCCGTAGTTAAAAATCAT 59.935 43.478 0.00 0.00 0.00 2.45
1748 4948 2.417239 CCGCAGCCGTAGTTAAAAATCA 59.583 45.455 0.00 0.00 0.00 2.57
1749 4949 2.790123 GCCGCAGCCGTAGTTAAAAATC 60.790 50.000 0.00 0.00 0.00 2.17
1750 4950 1.131693 GCCGCAGCCGTAGTTAAAAAT 59.868 47.619 0.00 0.00 0.00 1.82
1751 4951 0.518195 GCCGCAGCCGTAGTTAAAAA 59.482 50.000 0.00 0.00 0.00 1.94
1752 4952 2.164491 GCCGCAGCCGTAGTTAAAA 58.836 52.632 0.00 0.00 0.00 1.52
1753 4953 3.879159 GCCGCAGCCGTAGTTAAA 58.121 55.556 0.00 0.00 0.00 1.52
1764 4964 3.121030 CTCCTGAAACGGCCGCAG 61.121 66.667 28.58 23.71 0.00 5.18
1765 4965 3.469863 AACTCCTGAAACGGCCGCA 62.470 57.895 28.58 14.94 0.00 5.69
1766 4966 2.668550 AACTCCTGAAACGGCCGC 60.669 61.111 28.58 10.14 0.00 6.53
1767 4967 1.291877 CTCAACTCCTGAAACGGCCG 61.292 60.000 26.86 26.86 32.17 6.13
1768 4968 0.250338 ACTCAACTCCTGAAACGGCC 60.250 55.000 0.00 0.00 32.17 6.13
1769 4969 1.149148 GACTCAACTCCTGAAACGGC 58.851 55.000 0.00 0.00 32.17 5.68
1770 4970 1.269621 ACGACTCAACTCCTGAAACGG 60.270 52.381 0.00 0.00 37.14 4.44
1771 4971 1.787155 CACGACTCAACTCCTGAAACG 59.213 52.381 0.00 0.00 38.10 3.60
1772 4972 2.135933 CCACGACTCAACTCCTGAAAC 58.864 52.381 0.00 0.00 32.17 2.78
1773 4973 2.035961 CTCCACGACTCAACTCCTGAAA 59.964 50.000 0.00 0.00 32.17 2.69
1774 4974 1.613925 CTCCACGACTCAACTCCTGAA 59.386 52.381 0.00 0.00 32.17 3.02
1775 4975 1.248486 CTCCACGACTCAACTCCTGA 58.752 55.000 0.00 0.00 0.00 3.86
1776 4976 0.962489 ACTCCACGACTCAACTCCTG 59.038 55.000 0.00 0.00 0.00 3.86
1777 4977 0.962489 CACTCCACGACTCAACTCCT 59.038 55.000 0.00 0.00 0.00 3.69
1778 4978 0.038159 CCACTCCACGACTCAACTCC 60.038 60.000 0.00 0.00 0.00 3.85
1779 4979 0.959553 TCCACTCCACGACTCAACTC 59.040 55.000 0.00 0.00 0.00 3.01
1780 4980 0.962489 CTCCACTCCACGACTCAACT 59.038 55.000 0.00 0.00 0.00 3.16
1781 4981 0.667792 GCTCCACTCCACGACTCAAC 60.668 60.000 0.00 0.00 0.00 3.18
1782 4982 1.666011 GCTCCACTCCACGACTCAA 59.334 57.895 0.00 0.00 0.00 3.02
1783 4983 2.626780 CGCTCCACTCCACGACTCA 61.627 63.158 0.00 0.00 0.00 3.41
1784 4984 2.179517 CGCTCCACTCCACGACTC 59.820 66.667 0.00 0.00 0.00 3.36
1785 4985 4.057428 GCGCTCCACTCCACGACT 62.057 66.667 0.00 0.00 0.00 4.18
1788 4988 4.803426 GAGGCGCTCCACTCCACG 62.803 72.222 7.64 0.00 33.74 4.94
1796 4996 4.821589 CCTGTTCGGAGGCGCTCC 62.822 72.222 7.64 11.60 46.44 4.70
1797 4997 4.821589 CCCTGTTCGGAGGCGCTC 62.822 72.222 7.64 2.45 33.16 5.03
1802 5002 0.613777 ACTAAAGCCCTGTTCGGAGG 59.386 55.000 0.00 0.00 33.16 4.30
1803 5003 1.550976 AGACTAAAGCCCTGTTCGGAG 59.449 52.381 0.00 0.00 33.16 4.63
1804 5004 1.275291 CAGACTAAAGCCCTGTTCGGA 59.725 52.381 0.00 0.00 33.16 4.55
1805 5005 1.275291 TCAGACTAAAGCCCTGTTCGG 59.725 52.381 0.00 0.00 0.00 4.30
1806 5006 2.288825 TGTCAGACTAAAGCCCTGTTCG 60.289 50.000 1.31 0.00 0.00 3.95
1807 5007 3.402628 TGTCAGACTAAAGCCCTGTTC 57.597 47.619 1.31 0.00 0.00 3.18
1808 5008 4.373156 AATGTCAGACTAAAGCCCTGTT 57.627 40.909 1.31 0.00 0.00 3.16
1809 5009 4.373156 AAATGTCAGACTAAAGCCCTGT 57.627 40.909 1.31 0.00 0.00 4.00
1810 5010 4.082571 CCAAAATGTCAGACTAAAGCCCTG 60.083 45.833 1.31 0.00 0.00 4.45
1811 5011 4.082125 CCAAAATGTCAGACTAAAGCCCT 58.918 43.478 1.31 0.00 0.00 5.19
1812 5012 4.079253 TCCAAAATGTCAGACTAAAGCCC 58.921 43.478 1.31 0.00 0.00 5.19
1813 5013 5.163612 GGATCCAAAATGTCAGACTAAAGCC 60.164 44.000 6.95 0.00 0.00 4.35
1814 5014 5.447818 CGGATCCAAAATGTCAGACTAAAGC 60.448 44.000 13.41 0.00 0.00 3.51
1815 5015 5.643777 ACGGATCCAAAATGTCAGACTAAAG 59.356 40.000 13.41 0.00 0.00 1.85
1816 5016 5.556915 ACGGATCCAAAATGTCAGACTAAA 58.443 37.500 13.41 0.00 0.00 1.85
1817 5017 5.160607 ACGGATCCAAAATGTCAGACTAA 57.839 39.130 13.41 0.00 0.00 2.24
1818 5018 4.819105 ACGGATCCAAAATGTCAGACTA 57.181 40.909 13.41 0.00 0.00 2.59
1819 5019 3.703001 ACGGATCCAAAATGTCAGACT 57.297 42.857 13.41 0.00 0.00 3.24
1820 5020 3.119849 CCAACGGATCCAAAATGTCAGAC 60.120 47.826 13.41 0.00 0.00 3.51
1848 5092 3.887716 CCCCAGCTCATTCTCTTTATTGG 59.112 47.826 0.00 0.00 0.00 3.16
1973 5257 5.603596 TGACTGTAAACTCTTTTCGCCTAA 58.396 37.500 0.00 0.00 0.00 2.69
2001 5337 2.563798 CCACTGTTGCGCCCATTGT 61.564 57.895 4.18 0.00 0.00 2.71
2055 5391 2.002586 CAACACTGAAGCGAATCCGAT 58.997 47.619 0.00 0.00 38.22 4.18
2079 5415 4.651503 ACCACACTCGATCTCATCCTTATT 59.348 41.667 0.00 0.00 0.00 1.40
2113 5449 1.073923 GATGTTGTTCCACTGGACCCT 59.926 52.381 0.00 0.00 0.00 4.34
2184 5520 0.535335 CCACGGCACCACTATGTACT 59.465 55.000 0.00 0.00 0.00 2.73
2199 5535 2.025441 CCCACAACAAACGCCACG 59.975 61.111 0.00 0.00 0.00 4.94
2219 5555 4.502962 CACAAACCAAACAAAGGTGTCAT 58.497 39.130 0.00 0.00 39.86 3.06
2285 5660 3.349006 GCTGTGTGTGCCCGTCTG 61.349 66.667 0.00 0.00 0.00 3.51
2348 5723 9.221775 GCTTATACACTTGAAACCAAATTATCG 57.778 33.333 0.00 0.00 0.00 2.92
2426 5801 2.285083 TGGTATTCCGCATAACAGCAC 58.715 47.619 0.00 0.00 29.23 4.40
2437 7641 9.516314 GGATTTTCTAAATTTTCTGGTATTCCG 57.484 33.333 0.00 0.00 36.30 4.30
2497 8702 3.231818 TGGATTTTCTACCCCGCAAAAA 58.768 40.909 0.00 0.00 0.00 1.94
2498 8703 2.877866 TGGATTTTCTACCCCGCAAAA 58.122 42.857 0.00 0.00 0.00 2.44
2499 8704 2.588464 TGGATTTTCTACCCCGCAAA 57.412 45.000 0.00 0.00 0.00 3.68
2500 8705 2.374184 CATGGATTTTCTACCCCGCAA 58.626 47.619 0.00 0.00 0.00 4.85
2501 8706 1.409521 CCATGGATTTTCTACCCCGCA 60.410 52.381 5.56 0.00 0.00 5.69
2502 8707 1.318576 CCATGGATTTTCTACCCCGC 58.681 55.000 5.56 0.00 0.00 6.13
2503 8708 2.729028 ACCATGGATTTTCTACCCCG 57.271 50.000 21.47 0.00 0.00 5.73
2504 8709 6.040504 GTCAAATACCATGGATTTTCTACCCC 59.959 42.308 21.47 0.29 0.00 4.95
2505 8710 6.605594 TGTCAAATACCATGGATTTTCTACCC 59.394 38.462 21.47 4.10 0.00 3.69
2506 8711 7.339466 ACTGTCAAATACCATGGATTTTCTACC 59.661 37.037 21.47 5.61 0.00 3.18
2507 8712 8.184192 CACTGTCAAATACCATGGATTTTCTAC 58.816 37.037 21.47 15.88 0.00 2.59
2508 8713 7.148086 GCACTGTCAAATACCATGGATTTTCTA 60.148 37.037 21.47 0.00 0.00 2.10
2509 8714 6.350445 GCACTGTCAAATACCATGGATTTTCT 60.350 38.462 21.47 0.00 0.00 2.52
2510 8715 5.807011 GCACTGTCAAATACCATGGATTTTC 59.193 40.000 21.47 13.99 0.00 2.29
2511 8716 5.245751 TGCACTGTCAAATACCATGGATTTT 59.754 36.000 21.47 14.28 0.00 1.82
2512 8717 4.771577 TGCACTGTCAAATACCATGGATTT 59.228 37.500 21.47 16.26 0.00 2.17
2513 8718 4.158394 GTGCACTGTCAAATACCATGGATT 59.842 41.667 21.47 11.01 0.00 3.01
2514 8719 3.696051 GTGCACTGTCAAATACCATGGAT 59.304 43.478 21.47 4.69 0.00 3.41
2515 8720 3.081061 GTGCACTGTCAAATACCATGGA 58.919 45.455 21.47 2.01 0.00 3.41
2516 8721 2.819019 TGTGCACTGTCAAATACCATGG 59.181 45.455 19.41 11.19 0.00 3.66
2517 8722 4.502171 TTGTGCACTGTCAAATACCATG 57.498 40.909 19.41 0.00 0.00 3.66
2518 8723 4.082081 CCATTGTGCACTGTCAAATACCAT 60.082 41.667 19.41 0.00 0.00 3.55
2519 8724 3.255395 CCATTGTGCACTGTCAAATACCA 59.745 43.478 19.41 0.00 0.00 3.25
2520 8725 3.836949 CCATTGTGCACTGTCAAATACC 58.163 45.455 19.41 0.00 0.00 2.73
2521 8726 3.057315 AGCCATTGTGCACTGTCAAATAC 60.057 43.478 19.41 4.92 0.00 1.89
2522 8727 3.156293 AGCCATTGTGCACTGTCAAATA 58.844 40.909 19.41 0.00 0.00 1.40
2523 8728 1.965643 AGCCATTGTGCACTGTCAAAT 59.034 42.857 19.41 5.95 0.00 2.32
2524 8729 1.337703 GAGCCATTGTGCACTGTCAAA 59.662 47.619 19.41 3.45 0.00 2.69
2525 8730 0.953727 GAGCCATTGTGCACTGTCAA 59.046 50.000 19.41 3.95 0.00 3.18
2526 8731 0.109153 AGAGCCATTGTGCACTGTCA 59.891 50.000 19.41 0.00 30.70 3.58
2527 8732 0.801251 GAGAGCCATTGTGCACTGTC 59.199 55.000 19.41 0.00 32.10 3.51
2741 8968 1.120530 ATAGACCTAACACGCCTGGG 58.879 55.000 0.00 0.00 0.00 4.45
2744 8971 1.480954 CCACATAGACCTAACACGCCT 59.519 52.381 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.