Multiple sequence alignment - TraesCS6D01G233400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G233400 chr6D 100.000 2843 0 0 1421 4263 327366899 327364057 0.000000e+00 5251.0
1 TraesCS6D01G233400 chr6D 100.000 1234 0 0 1 1234 327368319 327367086 0.000000e+00 2279.0
2 TraesCS6D01G233400 chr6D 89.836 610 61 1 379 988 466065022 466065630 0.000000e+00 782.0
3 TraesCS6D01G233400 chr6D 88.962 607 67 0 377 983 414315701 414316307 0.000000e+00 750.0
4 TraesCS6D01G233400 chr6A 93.180 1349 51 20 1749 3089 466100014 466098699 0.000000e+00 1943.0
5 TraesCS6D01G233400 chr6A 87.934 605 38 12 3477 4077 466098405 466097832 0.000000e+00 680.0
6 TraesCS6D01G233400 chr6A 88.854 314 19 6 3127 3440 466098702 466098405 5.210000e-99 372.0
7 TraesCS6D01G233400 chr6A 94.068 236 10 3 1421 1652 466100287 466100052 5.240000e-94 355.0
8 TraesCS6D01G233400 chr6A 91.620 179 14 1 4073 4251 466092184 466092007 3.290000e-61 246.0
9 TraesCS6D01G233400 chr6A 92.373 118 6 3 133 247 466100978 466100861 9.480000e-37 165.0
10 TraesCS6D01G233400 chr6A 95.161 62 3 0 73 134 466479310 466479249 9.760000e-17 99.0
11 TraesCS6D01G233400 chr6B 92.444 1019 59 8 2075 3089 494086838 494087842 0.000000e+00 1439.0
12 TraesCS6D01G233400 chr6B 87.821 780 57 10 3477 4251 494088131 494088877 0.000000e+00 880.0
13 TraesCS6D01G233400 chr6B 86.777 605 52 9 1478 2076 494086167 494086749 0.000000e+00 649.0
14 TraesCS6D01G233400 chr6B 86.943 314 20 7 3127 3440 494087839 494088131 2.460000e-87 333.0
15 TraesCS6D01G233400 chr6B 91.034 145 10 2 1010 1154 494085418 494085559 4.350000e-45 193.0
16 TraesCS6D01G233400 chr6B 90.598 117 8 1 263 379 494085321 494085434 7.380000e-33 152.0
17 TraesCS6D01G233400 chr2A 90.924 606 54 1 379 983 894542 895147 0.000000e+00 813.0
18 TraesCS6D01G233400 chr5D 89.091 605 66 0 379 983 483625953 483625349 0.000000e+00 752.0
19 TraesCS6D01G233400 chr5D 87.629 97 12 0 3869 3965 491432661 491432565 3.480000e-21 113.0
20 TraesCS6D01G233400 chr2B 88.614 606 68 1 379 983 790723284 790723889 0.000000e+00 736.0
21 TraesCS6D01G233400 chr5A 88.177 609 72 0 377 985 572396547 572395939 0.000000e+00 726.0
22 TraesCS6D01G233400 chr5A 87.974 607 70 3 379 984 403661256 403661860 0.000000e+00 713.0
23 TraesCS6D01G233400 chr3D 88.411 604 68 2 384 985 436370878 436370275 0.000000e+00 726.0
24 TraesCS6D01G233400 chr3D 85.185 108 12 2 3858 3965 8759952 8760055 1.620000e-19 108.0
25 TraesCS6D01G233400 chr4D 88.060 603 72 0 379 981 347506959 347507561 0.000000e+00 715.0
26 TraesCS6D01G233400 chr4D 90.385 104 8 2 3865 3968 500440030 500440131 7.440000e-28 135.0
27 TraesCS6D01G233400 chr4D 89.899 99 9 1 3868 3965 358476837 358476935 4.470000e-25 126.0
28 TraesCS6D01G233400 chr3A 86.792 106 9 5 3865 3970 416594329 416594229 3.480000e-21 113.0
29 TraesCS6D01G233400 chr3A 83.505 97 15 1 3869 3965 505220945 505220850 5.870000e-14 89.8
30 TraesCS6D01G233400 chr3B 84.071 113 16 2 3863 3974 74281862 74281973 1.620000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G233400 chr6D 327364057 327368319 4262 True 3765.000000 5251 100.0000 1 4263 2 chr6D.!!$R1 4262
1 TraesCS6D01G233400 chr6D 466065022 466065630 608 False 782.000000 782 89.8360 379 988 1 chr6D.!!$F2 609
2 TraesCS6D01G233400 chr6D 414315701 414316307 606 False 750.000000 750 88.9620 377 983 1 chr6D.!!$F1 606
3 TraesCS6D01G233400 chr6A 466097832 466100978 3146 True 703.000000 1943 91.2818 133 4077 5 chr6A.!!$R3 3944
4 TraesCS6D01G233400 chr6B 494085321 494088877 3556 False 607.666667 1439 89.2695 263 4251 6 chr6B.!!$F1 3988
5 TraesCS6D01G233400 chr2A 894542 895147 605 False 813.000000 813 90.9240 379 983 1 chr2A.!!$F1 604
6 TraesCS6D01G233400 chr5D 483625349 483625953 604 True 752.000000 752 89.0910 379 983 1 chr5D.!!$R1 604
7 TraesCS6D01G233400 chr2B 790723284 790723889 605 False 736.000000 736 88.6140 379 983 1 chr2B.!!$F1 604
8 TraesCS6D01G233400 chr5A 572395939 572396547 608 True 726.000000 726 88.1770 377 985 1 chr5A.!!$R1 608
9 TraesCS6D01G233400 chr5A 403661256 403661860 604 False 713.000000 713 87.9740 379 984 1 chr5A.!!$F1 605
10 TraesCS6D01G233400 chr3D 436370275 436370878 603 True 726.000000 726 88.4110 384 985 1 chr3D.!!$R1 601
11 TraesCS6D01G233400 chr4D 347506959 347507561 602 False 715.000000 715 88.0600 379 981 1 chr4D.!!$F1 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
998 1002 0.540830 AAAACATGGCCGGCTTGGTA 60.541 50.0 28.56 8.37 41.21 3.25 F
1006 1010 0.322726 GCCGGCTTGGTACCCTTAAA 60.323 55.0 22.15 0.00 41.21 1.52 F
1202 1210 0.341258 TGCTTCCCTCCATCCTCTCT 59.659 55.0 0.00 0.00 0.00 3.10 F
3060 3457 0.608856 TTGTATGCTGGTGTGGCCTG 60.609 55.0 3.32 0.00 38.35 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2048 2349 0.323725 ATTGCATCACCAGACACCCC 60.324 55.000 0.00 0.00 0.00 4.95 R
2868 3265 1.004277 TGTAATCTGGACCTTGTGCCC 59.996 52.381 0.00 0.00 0.00 5.36 R
3065 3462 1.066143 ACATAACTGAAGGGCACGAGG 60.066 52.381 0.00 0.00 0.00 4.63 R
4087 4490 0.514691 CGTGCTTGAAGTTCAGAGCC 59.485 55.000 24.57 18.33 33.02 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.820926 TTCAAAACGCAAAGTATTCATGC 57.179 34.783 0.00 0.00 36.74 4.06
24 25 5.119931 TCAAAACGCAAAGTATTCATGCT 57.880 34.783 0.00 0.00 37.92 3.79
25 26 4.916831 TCAAAACGCAAAGTATTCATGCTG 59.083 37.500 0.00 0.00 37.92 4.41
26 27 2.549633 ACGCAAAGTATTCATGCTGC 57.450 45.000 0.00 0.00 37.92 5.25
27 28 2.086869 ACGCAAAGTATTCATGCTGCT 58.913 42.857 0.00 0.00 37.92 4.24
28 29 3.270027 ACGCAAAGTATTCATGCTGCTA 58.730 40.909 0.00 0.00 37.92 3.49
29 30 3.879295 ACGCAAAGTATTCATGCTGCTAT 59.121 39.130 0.00 0.00 37.92 2.97
30 31 5.056480 ACGCAAAGTATTCATGCTGCTATA 58.944 37.500 0.00 0.00 37.92 1.31
31 32 5.050091 ACGCAAAGTATTCATGCTGCTATAC 60.050 40.000 0.00 4.29 37.92 1.47
32 33 5.178252 CGCAAAGTATTCATGCTGCTATACT 59.822 40.000 0.00 6.38 37.92 2.12
33 34 6.293081 CGCAAAGTATTCATGCTGCTATACTT 60.293 38.462 16.59 16.59 42.53 2.24
34 35 6.854892 GCAAAGTATTCATGCTGCTATACTTG 59.145 38.462 19.96 16.51 40.85 3.16
35 36 7.254898 GCAAAGTATTCATGCTGCTATACTTGA 60.255 37.037 19.96 6.43 40.85 3.02
36 37 7.959689 AAGTATTCATGCTGCTATACTTGAG 57.040 36.000 19.22 0.00 40.45 3.02
37 38 7.060383 AGTATTCATGCTGCTATACTTGAGT 57.940 36.000 0.00 0.00 31.54 3.41
38 39 7.504403 AGTATTCATGCTGCTATACTTGAGTT 58.496 34.615 0.00 0.00 31.54 3.01
39 40 6.615264 ATTCATGCTGCTATACTTGAGTTG 57.385 37.500 0.00 0.00 0.00 3.16
40 41 3.873361 TCATGCTGCTATACTTGAGTTGC 59.127 43.478 0.00 0.00 0.00 4.17
41 42 3.333029 TGCTGCTATACTTGAGTTGCA 57.667 42.857 0.00 0.00 0.00 4.08
42 43 3.877559 TGCTGCTATACTTGAGTTGCAT 58.122 40.909 0.00 0.00 31.31 3.96
43 44 4.264253 TGCTGCTATACTTGAGTTGCATT 58.736 39.130 0.00 0.00 31.31 3.56
44 45 4.701651 TGCTGCTATACTTGAGTTGCATTT 59.298 37.500 0.00 0.00 31.31 2.32
45 46 5.183713 TGCTGCTATACTTGAGTTGCATTTT 59.816 36.000 0.00 0.00 31.31 1.82
46 47 6.095377 GCTGCTATACTTGAGTTGCATTTTT 58.905 36.000 0.00 0.00 31.31 1.94
97 98 8.770438 TTTTTAGACAAACTTGAGTTGCATTT 57.230 26.923 0.00 0.00 38.44 2.32
98 99 7.754069 TTTAGACAAACTTGAGTTGCATTTG 57.246 32.000 5.39 5.39 38.44 2.32
99 100 4.685924 AGACAAACTTGAGTTGCATTTGG 58.314 39.130 10.49 0.00 38.44 3.28
100 101 4.160252 AGACAAACTTGAGTTGCATTTGGT 59.840 37.500 10.49 0.00 38.44 3.67
101 102 5.359576 AGACAAACTTGAGTTGCATTTGGTA 59.640 36.000 10.49 0.00 38.44 3.25
102 103 6.040842 AGACAAACTTGAGTTGCATTTGGTAT 59.959 34.615 10.49 0.00 38.44 2.73
103 104 6.581712 ACAAACTTGAGTTGCATTTGGTATT 58.418 32.000 10.49 0.00 38.44 1.89
104 105 7.721402 ACAAACTTGAGTTGCATTTGGTATTA 58.279 30.769 10.49 0.00 38.44 0.98
105 106 7.651704 ACAAACTTGAGTTGCATTTGGTATTAC 59.348 33.333 10.49 0.00 38.44 1.89
106 107 7.524717 AACTTGAGTTGCATTTGGTATTACT 57.475 32.000 0.00 0.00 36.80 2.24
107 108 6.913170 ACTTGAGTTGCATTTGGTATTACTG 58.087 36.000 0.00 0.00 0.00 2.74
108 109 5.309323 TGAGTTGCATTTGGTATTACTGC 57.691 39.130 0.00 0.00 0.00 4.40
109 110 4.142708 TGAGTTGCATTTGGTATTACTGCG 60.143 41.667 0.00 0.00 35.63 5.18
110 111 4.006989 AGTTGCATTTGGTATTACTGCGA 58.993 39.130 0.00 0.00 35.63 5.10
111 112 4.457603 AGTTGCATTTGGTATTACTGCGAA 59.542 37.500 0.00 0.00 35.63 4.70
112 113 5.125417 AGTTGCATTTGGTATTACTGCGAAT 59.875 36.000 0.00 0.00 35.63 3.34
113 114 5.574891 TGCATTTGGTATTACTGCGAATT 57.425 34.783 0.00 0.00 35.63 2.17
114 115 5.339177 TGCATTTGGTATTACTGCGAATTG 58.661 37.500 0.00 0.00 35.63 2.32
115 116 4.739716 GCATTTGGTATTACTGCGAATTGG 59.260 41.667 0.00 0.00 0.00 3.16
116 117 5.449862 GCATTTGGTATTACTGCGAATTGGA 60.450 40.000 0.00 0.00 0.00 3.53
117 118 6.735694 GCATTTGGTATTACTGCGAATTGGAT 60.736 38.462 0.00 0.00 0.00 3.41
118 119 5.749596 TTGGTATTACTGCGAATTGGATG 57.250 39.130 0.00 0.00 0.00 3.51
119 120 4.776349 TGGTATTACTGCGAATTGGATGT 58.224 39.130 0.00 0.00 0.00 3.06
120 121 4.814234 TGGTATTACTGCGAATTGGATGTC 59.186 41.667 0.00 0.00 0.00 3.06
121 122 5.057149 GGTATTACTGCGAATTGGATGTCT 58.943 41.667 0.00 0.00 0.00 3.41
122 123 5.177696 GGTATTACTGCGAATTGGATGTCTC 59.822 44.000 0.00 0.00 0.00 3.36
123 124 4.471904 TTACTGCGAATTGGATGTCTCT 57.528 40.909 0.00 0.00 0.00 3.10
124 125 3.340814 ACTGCGAATTGGATGTCTCTT 57.659 42.857 0.00 0.00 0.00 2.85
125 126 3.679389 ACTGCGAATTGGATGTCTCTTT 58.321 40.909 0.00 0.00 0.00 2.52
126 127 4.074970 ACTGCGAATTGGATGTCTCTTTT 58.925 39.130 0.00 0.00 0.00 2.27
127 128 4.520492 ACTGCGAATTGGATGTCTCTTTTT 59.480 37.500 0.00 0.00 0.00 1.94
128 129 5.705441 ACTGCGAATTGGATGTCTCTTTTTA 59.295 36.000 0.00 0.00 0.00 1.52
129 130 6.206634 ACTGCGAATTGGATGTCTCTTTTTAA 59.793 34.615 0.00 0.00 0.00 1.52
130 131 7.094205 ACTGCGAATTGGATGTCTCTTTTTAAT 60.094 33.333 0.00 0.00 0.00 1.40
131 132 7.250569 TGCGAATTGGATGTCTCTTTTTAATC 58.749 34.615 0.00 0.00 0.00 1.75
144 145 9.522804 GTCTCTTTTTAATCTATGTCATCGACT 57.477 33.333 0.00 0.00 33.15 4.18
164 165 3.054802 ACTGCCTAACCATCTCTTTCCAG 60.055 47.826 0.00 0.00 0.00 3.86
195 196 7.751047 TGCTACTACATTCGTCTCAAAATAC 57.249 36.000 0.00 0.00 0.00 1.89
199 200 7.596749 ACTACATTCGTCTCAAAATACAAGG 57.403 36.000 0.00 0.00 0.00 3.61
229 230 8.477419 TTCAGGTAACCTTTCAATTCAGATTT 57.523 30.769 0.00 0.00 37.17 2.17
254 255 4.953940 TTGAGAATGTTTTTCTTGGGGG 57.046 40.909 0.00 0.00 0.00 5.40
255 256 4.191804 TGAGAATGTTTTTCTTGGGGGA 57.808 40.909 0.00 0.00 0.00 4.81
256 257 3.895041 TGAGAATGTTTTTCTTGGGGGAC 59.105 43.478 0.00 0.00 0.00 4.46
257 258 4.152647 GAGAATGTTTTTCTTGGGGGACT 58.847 43.478 0.00 0.00 0.00 3.85
258 259 4.556697 AGAATGTTTTTCTTGGGGGACTT 58.443 39.130 0.00 0.00 0.00 3.01
259 260 4.344968 AGAATGTTTTTCTTGGGGGACTTG 59.655 41.667 0.00 0.00 0.00 3.16
260 261 2.393646 TGTTTTTCTTGGGGGACTTGG 58.606 47.619 0.00 0.00 0.00 3.61
261 262 2.023888 TGTTTTTCTTGGGGGACTTGGA 60.024 45.455 0.00 0.00 0.00 3.53
273 274 3.895041 GGGGACTTGGAGAAATGTTTCAA 59.105 43.478 8.09 0.00 39.61 2.69
280 281 8.186709 ACTTGGAGAAATGTTTCAATTCAGAT 57.813 30.769 8.09 0.00 39.61 2.90
296 297 6.821616 ATTCAGATGATCTAAACCTGGTCT 57.178 37.500 0.00 0.00 0.00 3.85
338 339 1.404843 GTTCGGCCCATCTCTCTACT 58.595 55.000 0.00 0.00 0.00 2.57
339 340 1.338655 GTTCGGCCCATCTCTCTACTC 59.661 57.143 0.00 0.00 0.00 2.59
340 341 0.551396 TCGGCCCATCTCTCTACTCA 59.449 55.000 0.00 0.00 0.00 3.41
348 349 4.558178 CCATCTCTCTACTCATCATGTGC 58.442 47.826 0.00 0.00 0.00 4.57
351 352 4.530875 TCTCTCTACTCATCATGTGCAGA 58.469 43.478 0.00 0.00 0.00 4.26
355 356 5.003692 TCTACTCATCATGTGCAGAGAAC 57.996 43.478 5.49 0.00 32.59 3.01
356 357 3.690475 ACTCATCATGTGCAGAGAACA 57.310 42.857 5.49 0.00 32.59 3.18
371 372 5.390991 GCAGAGAACAGTAGTAAAACATGGC 60.391 44.000 0.00 0.00 0.00 4.40
372 373 5.122396 CAGAGAACAGTAGTAAAACATGGCC 59.878 44.000 0.00 0.00 0.00 5.36
373 374 4.332828 AGAACAGTAGTAAAACATGGCCC 58.667 43.478 0.00 0.00 0.00 5.80
374 375 2.706890 ACAGTAGTAAAACATGGCCCG 58.293 47.619 0.00 0.00 0.00 6.13
375 376 2.014128 CAGTAGTAAAACATGGCCCGG 58.986 52.381 0.00 0.00 0.00 5.73
444 446 3.758554 AGTGATCAATAACAGGCAACCAC 59.241 43.478 0.00 0.00 37.17 4.16
535 537 2.816083 CGATGCGGCGGTAACCAA 60.816 61.111 9.78 0.00 0.00 3.67
541 543 1.301423 GCGGCGGTAACCAATTATGA 58.699 50.000 9.78 0.00 0.00 2.15
565 567 1.523154 GCAGTCGGGGTCATTTGCAA 61.523 55.000 0.00 0.00 0.00 4.08
639 641 0.551396 GGATCCCCCGACTTTGGAAT 59.449 55.000 0.00 0.00 0.00 3.01
649 651 2.355716 CGACTTTGGAATCCCTAGCCAA 60.356 50.000 0.00 0.00 39.75 4.52
671 673 3.803082 GAAGCGCTCGCATTGGCA 61.803 61.111 12.06 0.00 44.88 4.92
704 706 2.034687 AGGCGCATCCAAGTTGCT 59.965 55.556 10.83 0.00 37.96 3.91
742 744 2.172505 TGGTGCAGGACATACATAAGGG 59.827 50.000 0.00 0.00 0.00 3.95
782 786 8.757982 ATGGAGCAGTTATTCATGAAATAGTT 57.242 30.769 13.09 0.00 31.52 2.24
914 918 2.983192 TGTTTGGTTAGGACATCCCAGA 59.017 45.455 0.00 0.00 37.41 3.86
942 946 5.168647 ACCATCCGTCCTTGTAAACATTA 57.831 39.130 0.00 0.00 0.00 1.90
996 1000 1.370810 AAAAACATGGCCGGCTTGG 59.629 52.632 28.56 17.78 42.50 3.61
997 1001 1.406860 AAAAACATGGCCGGCTTGGT 61.407 50.000 28.56 20.28 41.21 3.67
998 1002 0.540830 AAAACATGGCCGGCTTGGTA 60.541 50.000 28.56 8.37 41.21 3.25
999 1003 1.248101 AAACATGGCCGGCTTGGTAC 61.248 55.000 28.56 9.02 41.21 3.34
1000 1004 2.828549 CATGGCCGGCTTGGTACC 60.829 66.667 28.56 4.43 41.21 3.34
1001 1005 4.123545 ATGGCCGGCTTGGTACCC 62.124 66.667 28.56 7.32 41.21 3.69
1003 1007 4.043100 GGCCGGCTTGGTACCCTT 62.043 66.667 28.56 0.00 41.21 3.95
1004 1008 2.672181 GGCCGGCTTGGTACCCTTA 61.672 63.158 28.56 0.00 41.21 2.69
1005 1009 1.300634 GCCGGCTTGGTACCCTTAA 59.699 57.895 22.15 0.00 41.21 1.85
1006 1010 0.322726 GCCGGCTTGGTACCCTTAAA 60.323 55.000 22.15 0.00 41.21 1.52
1007 1011 1.887522 GCCGGCTTGGTACCCTTAAAA 60.888 52.381 22.15 0.00 41.21 1.52
1008 1012 2.516906 CCGGCTTGGTACCCTTAAAAA 58.483 47.619 10.07 0.00 0.00 1.94
1031 1035 2.059786 CATGGCCCGGCTTGGATTT 61.060 57.895 9.86 0.00 42.00 2.17
1060 1064 2.809601 GCTGGACGTGTAGGTGCG 60.810 66.667 0.00 0.00 0.00 5.34
1067 1071 2.960170 GTGTAGGTGCGGTCGACT 59.040 61.111 16.46 0.00 0.00 4.18
1114 1118 2.900838 TCGCTCGATCCGACCTCC 60.901 66.667 4.45 0.00 0.00 4.30
1135 1139 2.045926 CTGGTTCTTCGCCCCAGG 60.046 66.667 0.00 0.00 41.69 4.45
1161 1169 2.435059 GTGCCCTCTCAAGCGACC 60.435 66.667 0.00 0.00 0.00 4.79
1164 1172 2.581354 CCCTCTCAAGCGACCAGG 59.419 66.667 0.00 0.00 0.00 4.45
1177 1185 3.402681 CCAGGCGGTGTCCTCCAT 61.403 66.667 0.00 0.00 33.25 3.41
1189 1197 4.844420 CTCCATCGAGGTGCTTCC 57.156 61.111 0.00 0.00 39.02 3.46
1190 1198 1.144936 CTCCATCGAGGTGCTTCCC 59.855 63.158 0.00 0.00 39.02 3.97
1191 1199 1.306141 TCCATCGAGGTGCTTCCCT 60.306 57.895 0.00 0.00 39.02 4.20
1192 1200 1.144936 CCATCGAGGTGCTTCCCTC 59.855 63.158 0.00 7.38 46.37 4.30
1197 1205 1.529309 GAGGTGCTTCCCTCCATCC 59.471 63.158 6.43 0.00 44.49 3.51
1198 1206 0.985490 GAGGTGCTTCCCTCCATCCT 60.985 60.000 6.43 0.00 44.49 3.24
1199 1207 0.985490 AGGTGCTTCCCTCCATCCTC 60.985 60.000 0.00 0.00 36.75 3.71
1200 1208 0.985490 GGTGCTTCCCTCCATCCTCT 60.985 60.000 0.00 0.00 0.00 3.69
1201 1209 0.467804 GTGCTTCCCTCCATCCTCTC 59.532 60.000 0.00 0.00 0.00 3.20
1202 1210 0.341258 TGCTTCCCTCCATCCTCTCT 59.659 55.000 0.00 0.00 0.00 3.10
1203 1211 1.047801 GCTTCCCTCCATCCTCTCTC 58.952 60.000 0.00 0.00 0.00 3.20
1204 1212 1.715785 CTTCCCTCCATCCTCTCTCC 58.284 60.000 0.00 0.00 0.00 3.71
1205 1213 1.018840 TTCCCTCCATCCTCTCTCCA 58.981 55.000 0.00 0.00 0.00 3.86
1206 1214 1.249195 TCCCTCCATCCTCTCTCCAT 58.751 55.000 0.00 0.00 0.00 3.41
1207 1215 1.582624 TCCCTCCATCCTCTCTCCATT 59.417 52.381 0.00 0.00 0.00 3.16
1208 1216 2.021639 TCCCTCCATCCTCTCTCCATTT 60.022 50.000 0.00 0.00 0.00 2.32
1209 1217 2.782341 CCCTCCATCCTCTCTCCATTTT 59.218 50.000 0.00 0.00 0.00 1.82
1210 1218 3.181446 CCCTCCATCCTCTCTCCATTTTC 60.181 52.174 0.00 0.00 0.00 2.29
1211 1219 3.715834 CCTCCATCCTCTCTCCATTTTCT 59.284 47.826 0.00 0.00 0.00 2.52
1212 1220 4.202346 CCTCCATCCTCTCTCCATTTTCTC 60.202 50.000 0.00 0.00 0.00 2.87
1213 1221 3.713764 TCCATCCTCTCTCCATTTTCTCC 59.286 47.826 0.00 0.00 0.00 3.71
1214 1222 3.715834 CCATCCTCTCTCCATTTTCTCCT 59.284 47.826 0.00 0.00 0.00 3.69
1215 1223 4.444591 CCATCCTCTCTCCATTTTCTCCTG 60.445 50.000 0.00 0.00 0.00 3.86
1216 1224 3.796111 TCCTCTCTCCATTTTCTCCTGT 58.204 45.455 0.00 0.00 0.00 4.00
1217 1225 3.772025 TCCTCTCTCCATTTTCTCCTGTC 59.228 47.826 0.00 0.00 0.00 3.51
1218 1226 3.118445 CCTCTCTCCATTTTCTCCTGTCC 60.118 52.174 0.00 0.00 0.00 4.02
1219 1227 2.840651 TCTCTCCATTTTCTCCTGTCCC 59.159 50.000 0.00 0.00 0.00 4.46
1220 1228 1.916181 TCTCCATTTTCTCCTGTCCCC 59.084 52.381 0.00 0.00 0.00 4.81
1221 1229 1.918957 CTCCATTTTCTCCTGTCCCCT 59.081 52.381 0.00 0.00 0.00 4.79
1222 1230 1.916181 TCCATTTTCTCCTGTCCCCTC 59.084 52.381 0.00 0.00 0.00 4.30
1223 1231 1.918957 CCATTTTCTCCTGTCCCCTCT 59.081 52.381 0.00 0.00 0.00 3.69
1224 1232 2.092699 CCATTTTCTCCTGTCCCCTCTC 60.093 54.545 0.00 0.00 0.00 3.20
1225 1233 2.723530 TTTTCTCCTGTCCCCTCTCT 57.276 50.000 0.00 0.00 0.00 3.10
1226 1234 1.944177 TTTCTCCTGTCCCCTCTCTG 58.056 55.000 0.00 0.00 0.00 3.35
1227 1235 0.787084 TTCTCCTGTCCCCTCTCTGT 59.213 55.000 0.00 0.00 0.00 3.41
1228 1236 1.682478 TCTCCTGTCCCCTCTCTGTA 58.318 55.000 0.00 0.00 0.00 2.74
1229 1237 2.218673 TCTCCTGTCCCCTCTCTGTAT 58.781 52.381 0.00 0.00 0.00 2.29
1230 1238 2.091610 TCTCCTGTCCCCTCTCTGTATG 60.092 54.545 0.00 0.00 0.00 2.39
1231 1239 0.755686 CCTGTCCCCTCTCTGTATGC 59.244 60.000 0.00 0.00 0.00 3.14
1232 1240 1.690845 CCTGTCCCCTCTCTGTATGCT 60.691 57.143 0.00 0.00 0.00 3.79
1233 1241 1.411977 CTGTCCCCTCTCTGTATGCTG 59.588 57.143 0.00 0.00 0.00 4.41
1643 1942 6.183360 CGAGCAGTTATCAGTTGTTCATTGAT 60.183 38.462 0.00 5.92 35.79 2.57
1655 1954 8.347771 CAGTTGTTCATTGATATAACCCATCTG 58.652 37.037 0.00 0.00 0.00 2.90
1662 1961 8.659527 TCATTGATATAACCCATCTGTATGTGT 58.340 33.333 0.00 0.00 0.00 3.72
1668 1967 2.283298 CCCATCTGTATGTGTGAGCAC 58.717 52.381 0.00 0.00 45.44 4.40
1677 1976 2.238942 TGTGTGAGCACTAGGTGTTG 57.761 50.000 1.99 0.00 45.44 3.33
1679 1978 1.128200 TGTGAGCACTAGGTGTTGGT 58.872 50.000 1.99 0.00 35.75 3.67
1735 2034 3.126831 CGACTCATACTCATTTCTGGGC 58.873 50.000 0.00 0.00 0.00 5.36
1736 2035 3.471680 GACTCATACTCATTTCTGGGCC 58.528 50.000 0.00 0.00 0.00 5.80
1739 2038 3.035363 TCATACTCATTTCTGGGCCGTA 58.965 45.455 0.00 0.00 0.00 4.02
1842 2142 5.098893 GGCTATTGAGTATCGAGCACTATG 58.901 45.833 2.65 0.00 39.02 2.23
1845 2145 6.127980 GCTATTGAGTATCGAGCACTATGGTA 60.128 42.308 2.65 0.00 37.72 3.25
1849 2149 6.004574 TGAGTATCGAGCACTATGGTAATCT 58.995 40.000 2.65 0.00 38.61 2.40
2072 2376 4.160252 GGGTGTCTGGTGATGCAATTTATT 59.840 41.667 0.00 0.00 0.00 1.40
2103 2497 5.098893 CGATGTAGAAGCAGTAGCATATCC 58.901 45.833 0.00 0.00 45.49 2.59
2193 2588 8.720562 TGACACAAATGACTAATTGTACATCAG 58.279 33.333 0.00 0.00 37.66 2.90
2199 2594 4.635765 TGACTAATTGTACATCAGGCAAGC 59.364 41.667 0.00 0.00 0.00 4.01
2483 2878 4.337836 TGCTGTGTGCTGTTATCTTTGAAA 59.662 37.500 0.00 0.00 43.37 2.69
2622 3017 2.769095 AGGACTACAGAGATTGAAGGGC 59.231 50.000 0.00 0.00 0.00 5.19
2691 3086 6.772233 TGTATCATGGGGACTGTTTCAATATG 59.228 38.462 0.00 0.00 0.00 1.78
2817 3214 6.503524 TCTGTGCAACCTTTTATTTGAGAAC 58.496 36.000 0.00 0.00 34.36 3.01
2868 3265 3.829601 AGAGTGGACTTGTGGAGAGTTAG 59.170 47.826 0.00 0.00 0.00 2.34
2870 3267 2.028020 GTGGACTTGTGGAGAGTTAGGG 60.028 54.545 0.00 0.00 0.00 3.53
2888 3285 1.004277 GGGCACAAGGTCCAGATTACA 59.996 52.381 0.00 0.00 42.53 2.41
2924 3321 2.629617 CTGGGATTGAACCTGCACTTTT 59.370 45.455 0.00 0.00 0.00 2.27
2925 3322 2.627699 TGGGATTGAACCTGCACTTTTC 59.372 45.455 0.00 0.00 0.00 2.29
2926 3323 2.029020 GGGATTGAACCTGCACTTTTCC 60.029 50.000 0.00 0.00 0.00 3.13
2927 3324 2.627699 GGATTGAACCTGCACTTTTCCA 59.372 45.455 0.00 0.00 0.00 3.53
2928 3325 3.552890 GGATTGAACCTGCACTTTTCCAC 60.553 47.826 0.00 0.00 0.00 4.02
2929 3326 2.435372 TGAACCTGCACTTTTCCACT 57.565 45.000 0.00 0.00 0.00 4.00
2930 3327 2.733956 TGAACCTGCACTTTTCCACTT 58.266 42.857 0.00 0.00 0.00 3.16
2931 3328 3.096092 TGAACCTGCACTTTTCCACTTT 58.904 40.909 0.00 0.00 0.00 2.66
2937 3334 2.881513 TGCACTTTTCCACTTTATCGCA 59.118 40.909 0.00 0.00 0.00 5.10
2940 3337 4.556699 GCACTTTTCCACTTTATCGCAACT 60.557 41.667 0.00 0.00 0.00 3.16
2999 3396 6.600032 AGTGTTTTCTGTGTGTGGTGTATTTA 59.400 34.615 0.00 0.00 0.00 1.40
3005 3402 6.292150 TCTGTGTGTGGTGTATTTATGTTCA 58.708 36.000 0.00 0.00 0.00 3.18
3060 3457 0.608856 TTGTATGCTGGTGTGGCCTG 60.609 55.000 3.32 0.00 38.35 4.85
3062 3459 3.643595 TATGCTGGTGTGGCCTGGC 62.644 63.158 11.05 11.05 38.35 4.85
3086 3483 2.271800 CTCGTGCCCTTCAGTTATGTC 58.728 52.381 0.00 0.00 0.00 3.06
3087 3484 1.621317 TCGTGCCCTTCAGTTATGTCA 59.379 47.619 0.00 0.00 0.00 3.58
3088 3485 2.236146 TCGTGCCCTTCAGTTATGTCAT 59.764 45.455 0.00 0.00 0.00 3.06
3089 3486 3.009723 CGTGCCCTTCAGTTATGTCATT 58.990 45.455 0.00 0.00 0.00 2.57
3090 3487 3.181507 CGTGCCCTTCAGTTATGTCATTG 60.182 47.826 0.00 0.00 0.00 2.82
3091 3488 2.754552 TGCCCTTCAGTTATGTCATTGC 59.245 45.455 0.00 0.00 0.00 3.56
3092 3489 3.019564 GCCCTTCAGTTATGTCATTGCT 58.980 45.455 0.00 0.00 0.00 3.91
3093 3490 3.445096 GCCCTTCAGTTATGTCATTGCTT 59.555 43.478 0.00 0.00 0.00 3.91
3094 3491 4.640201 GCCCTTCAGTTATGTCATTGCTTA 59.360 41.667 0.00 0.00 0.00 3.09
3095 3492 5.220931 GCCCTTCAGTTATGTCATTGCTTAG 60.221 44.000 0.00 0.00 0.00 2.18
3096 3493 6.115446 CCCTTCAGTTATGTCATTGCTTAGA 58.885 40.000 0.00 0.00 0.00 2.10
3097 3494 6.599244 CCCTTCAGTTATGTCATTGCTTAGAA 59.401 38.462 0.00 0.00 0.00 2.10
3098 3495 7.284034 CCCTTCAGTTATGTCATTGCTTAGAAT 59.716 37.037 0.00 0.00 0.00 2.40
3099 3496 8.341173 CCTTCAGTTATGTCATTGCTTAGAATC 58.659 37.037 0.00 0.00 0.00 2.52
3100 3497 8.791327 TTCAGTTATGTCATTGCTTAGAATCA 57.209 30.769 0.00 0.00 0.00 2.57
3101 3498 8.969260 TCAGTTATGTCATTGCTTAGAATCAT 57.031 30.769 0.00 0.00 0.00 2.45
3102 3499 9.399797 TCAGTTATGTCATTGCTTAGAATCATT 57.600 29.630 0.00 0.00 0.00 2.57
3105 3502 9.793252 GTTATGTCATTGCTTAGAATCATTTGT 57.207 29.630 0.00 0.00 0.00 2.83
3108 3505 8.565896 TGTCATTGCTTAGAATCATTTGTAGT 57.434 30.769 0.00 0.00 0.00 2.73
3109 3506 9.665719 TGTCATTGCTTAGAATCATTTGTAGTA 57.334 29.630 0.00 0.00 0.00 1.82
3111 3508 9.330063 TCATTGCTTAGAATCATTTGTAGTAGG 57.670 33.333 0.00 0.00 0.00 3.18
3112 3509 7.553881 TTGCTTAGAATCATTTGTAGTAGGC 57.446 36.000 0.00 0.00 0.00 3.93
3113 3510 6.889198 TGCTTAGAATCATTTGTAGTAGGCT 58.111 36.000 0.00 0.00 0.00 4.58
3114 3511 6.986817 TGCTTAGAATCATTTGTAGTAGGCTC 59.013 38.462 0.00 0.00 0.00 4.70
3115 3512 7.147655 TGCTTAGAATCATTTGTAGTAGGCTCT 60.148 37.037 0.00 0.00 0.00 4.09
3116 3513 8.361139 GCTTAGAATCATTTGTAGTAGGCTCTA 58.639 37.037 0.00 0.00 0.00 2.43
3117 3514 9.906660 CTTAGAATCATTTGTAGTAGGCTCTAG 57.093 37.037 0.00 0.00 0.00 2.43
3118 3515 6.754193 AGAATCATTTGTAGTAGGCTCTAGC 58.246 40.000 0.00 0.00 41.14 3.42
3119 3516 6.553100 AGAATCATTTGTAGTAGGCTCTAGCT 59.447 38.462 1.39 0.00 41.70 3.32
3120 3517 6.739331 ATCATTTGTAGTAGGCTCTAGCTT 57.261 37.500 0.00 0.00 41.70 3.74
3121 3518 6.546428 TCATTTGTAGTAGGCTCTAGCTTT 57.454 37.500 0.00 0.00 41.70 3.51
3122 3519 6.947464 TCATTTGTAGTAGGCTCTAGCTTTT 58.053 36.000 0.00 0.00 41.70 2.27
3123 3520 6.818644 TCATTTGTAGTAGGCTCTAGCTTTTG 59.181 38.462 0.00 0.00 41.70 2.44
3124 3521 5.995565 TTGTAGTAGGCTCTAGCTTTTGA 57.004 39.130 0.00 0.00 41.70 2.69
3125 3522 5.995565 TGTAGTAGGCTCTAGCTTTTGAA 57.004 39.130 0.00 0.00 41.70 2.69
3126 3523 6.546428 TGTAGTAGGCTCTAGCTTTTGAAT 57.454 37.500 0.00 0.00 41.70 2.57
3151 3548 7.053498 TCATCATATTTACAAGCCTACTGCAA 58.947 34.615 0.00 0.00 44.83 4.08
3153 3550 7.083875 TCATATTTACAAGCCTACTGCAAAC 57.916 36.000 0.00 0.00 44.83 2.93
3203 3600 4.688021 TGTAATTGGTTTGCCTGTGAAAC 58.312 39.130 0.00 0.00 35.27 2.78
3244 3641 1.074405 TGCTGGGAATCTTCTGCAACT 59.926 47.619 0.00 0.00 0.00 3.16
3354 3751 6.832520 AATTACTGTGTTTGGCATCATGTA 57.167 33.333 0.00 0.00 0.00 2.29
3355 3752 6.832520 ATTACTGTGTTTGGCATCATGTAA 57.167 33.333 15.63 15.63 0.00 2.41
3356 3753 6.641169 TTACTGTGTTTGGCATCATGTAAA 57.359 33.333 0.00 0.00 0.00 2.01
3357 3754 5.528043 ACTGTGTTTGGCATCATGTAAAA 57.472 34.783 0.00 0.00 0.00 1.52
3358 3755 6.100404 ACTGTGTTTGGCATCATGTAAAAT 57.900 33.333 0.00 0.00 0.00 1.82
3359 3756 6.523840 ACTGTGTTTGGCATCATGTAAAATT 58.476 32.000 0.00 0.00 0.00 1.82
3360 3757 6.991531 ACTGTGTTTGGCATCATGTAAAATTT 59.008 30.769 0.00 0.00 0.00 1.82
3361 3758 7.041916 ACTGTGTTTGGCATCATGTAAAATTTG 60.042 33.333 0.00 0.00 0.00 2.32
3362 3759 6.079120 GTGTTTGGCATCATGTAAAATTTGC 58.921 36.000 0.00 0.00 0.00 3.68
3363 3760 5.761726 TGTTTGGCATCATGTAAAATTTGCA 59.238 32.000 0.00 0.00 0.00 4.08
3364 3761 6.073167 TGTTTGGCATCATGTAAAATTTGCAG 60.073 34.615 2.62 0.00 0.00 4.41
3365 3762 3.933955 TGGCATCATGTAAAATTTGCAGC 59.066 39.130 2.62 0.56 0.00 5.25
3366 3763 3.933955 GGCATCATGTAAAATTTGCAGCA 59.066 39.130 2.62 0.00 0.00 4.41
3367 3764 4.573201 GGCATCATGTAAAATTTGCAGCAT 59.427 37.500 0.00 0.00 0.00 3.79
3368 3765 5.065474 GGCATCATGTAAAATTTGCAGCATT 59.935 36.000 0.00 0.00 0.00 3.56
3369 3766 6.403855 GGCATCATGTAAAATTTGCAGCATTT 60.404 34.615 0.00 0.00 0.00 2.32
3404 3801 8.533569 AGGATACAACAAAATCCGGAAATTAT 57.466 30.769 9.01 0.00 45.35 1.28
3440 3837 3.632643 TCCTTGCATAGTGCTGAATGA 57.367 42.857 3.41 0.00 45.31 2.57
3441 3838 3.273434 TCCTTGCATAGTGCTGAATGAC 58.727 45.455 3.41 0.00 45.31 3.06
3442 3839 3.054875 TCCTTGCATAGTGCTGAATGACT 60.055 43.478 3.41 0.00 45.31 3.41
3443 3840 4.162131 TCCTTGCATAGTGCTGAATGACTA 59.838 41.667 3.41 0.00 45.31 2.59
3444 3841 4.510711 CCTTGCATAGTGCTGAATGACTAG 59.489 45.833 3.41 0.00 45.31 2.57
3445 3842 3.461061 TGCATAGTGCTGAATGACTAGC 58.539 45.455 3.41 0.00 45.31 3.42
3446 3843 3.133542 TGCATAGTGCTGAATGACTAGCT 59.866 43.478 3.41 0.00 45.31 3.32
3447 3844 3.493877 GCATAGTGCTGAATGACTAGCTG 59.506 47.826 0.00 0.00 40.96 4.24
3448 3845 2.021355 AGTGCTGAATGACTAGCTGC 57.979 50.000 0.00 0.00 40.52 5.25
3449 3846 1.277273 AGTGCTGAATGACTAGCTGCA 59.723 47.619 1.02 0.00 40.52 4.41
3450 3847 2.093075 AGTGCTGAATGACTAGCTGCAT 60.093 45.455 1.02 0.00 40.52 3.96
3451 3848 3.133542 AGTGCTGAATGACTAGCTGCATA 59.866 43.478 1.02 0.00 40.52 3.14
3452 3849 3.873361 GTGCTGAATGACTAGCTGCATAA 59.127 43.478 1.02 0.00 40.52 1.90
3453 3850 4.025061 GTGCTGAATGACTAGCTGCATAAG 60.025 45.833 1.02 0.00 40.52 1.73
3454 3851 4.125703 GCTGAATGACTAGCTGCATAAGT 58.874 43.478 1.02 1.93 36.99 2.24
3455 3852 4.025061 GCTGAATGACTAGCTGCATAAGTG 60.025 45.833 1.02 0.00 36.99 3.16
3456 3853 5.343307 TGAATGACTAGCTGCATAAGTGA 57.657 39.130 1.02 0.00 0.00 3.41
3457 3854 5.354767 TGAATGACTAGCTGCATAAGTGAG 58.645 41.667 1.02 0.00 0.00 3.51
3458 3855 5.127682 TGAATGACTAGCTGCATAAGTGAGA 59.872 40.000 1.02 0.00 0.00 3.27
3459 3856 5.804944 ATGACTAGCTGCATAAGTGAGAT 57.195 39.130 1.02 0.00 0.00 2.75
3460 3857 5.604758 TGACTAGCTGCATAAGTGAGATT 57.395 39.130 1.02 0.00 0.00 2.40
3461 3858 5.982356 TGACTAGCTGCATAAGTGAGATTT 58.018 37.500 1.02 0.00 0.00 2.17
3462 3859 6.045318 TGACTAGCTGCATAAGTGAGATTTC 58.955 40.000 1.02 0.00 0.00 2.17
3463 3860 6.127225 TGACTAGCTGCATAAGTGAGATTTCT 60.127 38.462 1.02 0.00 0.00 2.52
3464 3861 6.279882 ACTAGCTGCATAAGTGAGATTTCTC 58.720 40.000 1.02 0.46 43.15 2.87
3465 3862 5.356291 AGCTGCATAAGTGAGATTTCTCT 57.644 39.130 1.02 0.00 43.25 3.10
3466 3863 6.477053 AGCTGCATAAGTGAGATTTCTCTA 57.523 37.500 1.02 0.00 43.25 2.43
3467 3864 6.514947 AGCTGCATAAGTGAGATTTCTCTAG 58.485 40.000 1.02 0.00 43.25 2.43
3468 3865 6.323482 AGCTGCATAAGTGAGATTTCTCTAGA 59.677 38.462 1.02 0.00 43.25 2.43
3469 3866 6.642131 GCTGCATAAGTGAGATTTCTCTAGAG 59.358 42.308 13.98 13.98 43.25 2.43
3470 3867 7.469870 GCTGCATAAGTGAGATTTCTCTAGAGA 60.470 40.741 18.76 18.76 43.25 3.10
3471 3868 8.476064 TGCATAAGTGAGATTTCTCTAGAGAT 57.524 34.615 22.93 9.47 43.25 2.75
3472 3869 9.579932 TGCATAAGTGAGATTTCTCTAGAGATA 57.420 33.333 22.93 18.36 43.25 1.98
3575 3975 3.008375 TGCTCTATCTTTGTGTTCTGCCT 59.992 43.478 0.00 0.00 0.00 4.75
3628 4028 9.742144 TTATTTTGTTTTATGTACTAGGCCTGA 57.258 29.630 17.99 0.00 0.00 3.86
3635 4035 8.398665 GTTTTATGTACTAGGCCTGAAATGAAG 58.601 37.037 17.99 5.00 0.00 3.02
3637 4037 2.426842 ACTAGGCCTGAAATGAAGCC 57.573 50.000 17.99 0.00 46.13 4.35
3645 4045 3.007290 GCCTGAAATGAAGCCTCCTTTTT 59.993 43.478 0.00 0.00 0.00 1.94
3728 4130 1.961793 TGGGGTTATCGCATAAGCAC 58.038 50.000 15.24 13.29 44.63 4.40
3734 4137 5.034797 GGGTTATCGCATAAGCACTTTTTC 58.965 41.667 15.24 0.02 43.18 2.29
3799 4202 8.084073 TCATTCTTCTAATTTCTTTTGGCAGTG 58.916 33.333 0.00 0.00 0.00 3.66
3820 4223 3.876914 TGTTTCTGGTTAGCTTCTGTGTG 59.123 43.478 0.00 0.00 0.00 3.82
3835 4238 3.254411 TCTGTGTGCTACTGTTCTCTCAG 59.746 47.826 0.00 0.00 40.80 3.35
3878 4281 6.500751 AGAACTCAAAATTACTACTCCCTCCA 59.499 38.462 0.00 0.00 0.00 3.86
3881 4284 7.339482 ACTCAAAATTACTACTCCCTCCATTC 58.661 38.462 0.00 0.00 0.00 2.67
3938 4341 8.844441 TGAACTAAATTTGAACTAAAACCACG 57.156 30.769 0.00 0.00 0.00 4.94
3939 4342 8.675504 TGAACTAAATTTGAACTAAAACCACGA 58.324 29.630 0.00 0.00 0.00 4.35
3943 4346 3.929417 TTGAACTAAAACCACGACACG 57.071 42.857 0.00 0.00 0.00 4.49
3972 4375 9.723601 TTTTGTTACGTAGGGAGTATGTTTTAT 57.276 29.630 0.00 0.00 32.74 1.40
4006 4409 5.964751 GGTGCATTGTCATTTTGTTTTTGTC 59.035 36.000 0.00 0.00 0.00 3.18
4007 4410 5.671997 GTGCATTGTCATTTTGTTTTTGTCG 59.328 36.000 0.00 0.00 0.00 4.35
4008 4411 5.196825 GCATTGTCATTTTGTTTTTGTCGG 58.803 37.500 0.00 0.00 0.00 4.79
4036 4439 8.571336 GGCTATTTGCTTGATTTCACATACTAT 58.429 33.333 0.00 0.00 42.39 2.12
4049 4452 5.436175 TCACATACTATCACAAACCCCATG 58.564 41.667 0.00 0.00 0.00 3.66
4067 4470 5.163513 CCCATGAGTTCAGTAATTTGTTGC 58.836 41.667 0.00 0.00 0.00 4.17
4087 4490 6.487668 TGTTGCAGAGTATATCATGATTTGGG 59.512 38.462 14.65 0.00 0.00 4.12
4092 4495 5.789575 AGAGTATATCATGATTTGGGGCTCT 59.210 40.000 14.65 14.14 0.00 4.09
4108 4511 1.220529 CTCTGAACTTCAAGCACGCA 58.779 50.000 0.00 0.00 0.00 5.24
4112 4515 1.804151 TGAACTTCAAGCACGCATACC 59.196 47.619 0.00 0.00 0.00 2.73
4125 4528 3.217242 CATACCTGCACGCCTATCC 57.783 57.895 0.00 0.00 0.00 2.59
4142 4545 5.188434 CCTATCCTGCATATAATGGGTGTG 58.812 45.833 0.00 0.00 0.00 3.82
4152 4555 0.255890 AATGGGTGTGATCGAAGGGG 59.744 55.000 0.00 0.00 0.00 4.79
4193 4596 9.900710 ATCACGACTCATATATGTTAGAACTTC 57.099 33.333 12.42 0.00 0.00 3.01
4225 4628 6.828785 ACTGGTAATGGATATTTTGAGTGTCC 59.171 38.462 0.00 0.00 0.00 4.02
4226 4629 6.726379 TGGTAATGGATATTTTGAGTGTCCA 58.274 36.000 0.00 0.00 40.48 4.02
4229 4632 7.990886 GGTAATGGATATTTTGAGTGTCCACTA 59.009 37.037 0.00 0.00 42.66 2.74
4233 4636 7.047891 TGGATATTTTGAGTGTCCACTATCAC 58.952 38.462 0.00 0.00 42.66 3.06
4262 4665 8.282124 CAGAATATGCATTCAATTAGCTTGTG 57.718 34.615 3.54 0.00 42.66 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.630680 AGCATGAATACTTTGCGTTTTGAAG 59.369 36.000 0.00 0.00 0.00 3.02
1 2 5.401972 CAGCATGAATACTTTGCGTTTTGAA 59.598 36.000 0.00 0.00 39.69 2.69
2 3 4.916831 CAGCATGAATACTTTGCGTTTTGA 59.083 37.500 0.00 0.00 39.69 2.69
3 4 4.433283 GCAGCATGAATACTTTGCGTTTTG 60.433 41.667 0.00 0.00 39.69 2.44
4 5 3.674753 GCAGCATGAATACTTTGCGTTTT 59.325 39.130 0.00 0.00 39.69 2.43
5 6 3.057315 AGCAGCATGAATACTTTGCGTTT 60.057 39.130 0.00 0.00 39.69 3.60
6 7 2.489329 AGCAGCATGAATACTTTGCGTT 59.511 40.909 0.00 0.00 39.69 4.84
7 8 2.086869 AGCAGCATGAATACTTTGCGT 58.913 42.857 0.00 0.00 39.69 5.24
8 9 2.838386 AGCAGCATGAATACTTTGCG 57.162 45.000 0.00 0.00 39.69 4.85
9 10 6.551385 AGTATAGCAGCATGAATACTTTGC 57.449 37.500 0.00 0.00 41.23 3.68
10 11 8.146479 TCAAGTATAGCAGCATGAATACTTTG 57.854 34.615 14.81 11.98 45.96 2.77
11 12 7.989741 ACTCAAGTATAGCAGCATGAATACTTT 59.010 33.333 14.81 4.50 45.96 2.66
13 14 7.060383 ACTCAAGTATAGCAGCATGAATACT 57.940 36.000 0.00 0.00 43.92 2.12
14 15 7.571026 CAACTCAAGTATAGCAGCATGAATAC 58.429 38.462 0.00 0.00 39.69 1.89
15 16 6.203530 GCAACTCAAGTATAGCAGCATGAATA 59.796 38.462 0.00 0.00 39.69 1.75
16 17 5.008415 GCAACTCAAGTATAGCAGCATGAAT 59.992 40.000 0.00 0.00 39.69 2.57
17 18 4.333649 GCAACTCAAGTATAGCAGCATGAA 59.666 41.667 0.00 0.00 39.69 2.57
18 19 3.873361 GCAACTCAAGTATAGCAGCATGA 59.127 43.478 0.00 0.00 39.69 3.07
19 20 3.624410 TGCAACTCAAGTATAGCAGCATG 59.376 43.478 0.00 0.00 40.87 4.06
20 21 3.877559 TGCAACTCAAGTATAGCAGCAT 58.122 40.909 0.00 0.00 0.00 3.79
21 22 3.333029 TGCAACTCAAGTATAGCAGCA 57.667 42.857 0.00 0.00 0.00 4.41
22 23 4.889832 AATGCAACTCAAGTATAGCAGC 57.110 40.909 0.00 0.00 35.19 5.25
72 73 8.655092 CAAATGCAACTCAAGTTTGTCTAAAAA 58.345 29.630 0.00 0.00 35.83 1.94
73 74 7.277539 CCAAATGCAACTCAAGTTTGTCTAAAA 59.722 33.333 0.00 0.00 35.83 1.52
74 75 6.756074 CCAAATGCAACTCAAGTTTGTCTAAA 59.244 34.615 0.00 0.00 35.83 1.85
75 76 6.127479 ACCAAATGCAACTCAAGTTTGTCTAA 60.127 34.615 0.00 0.00 35.83 2.10
76 77 5.359576 ACCAAATGCAACTCAAGTTTGTCTA 59.640 36.000 0.00 0.00 35.83 2.59
77 78 4.160252 ACCAAATGCAACTCAAGTTTGTCT 59.840 37.500 0.00 0.00 35.83 3.41
78 79 4.432712 ACCAAATGCAACTCAAGTTTGTC 58.567 39.130 0.00 0.00 35.83 3.18
79 80 4.470334 ACCAAATGCAACTCAAGTTTGT 57.530 36.364 0.00 0.00 35.83 2.83
80 81 7.867403 AGTAATACCAAATGCAACTCAAGTTTG 59.133 33.333 0.00 0.00 35.83 2.93
81 82 7.867403 CAGTAATACCAAATGCAACTCAAGTTT 59.133 33.333 0.00 0.00 35.83 2.66
82 83 7.370383 CAGTAATACCAAATGCAACTCAAGTT 58.630 34.615 0.00 0.00 39.12 2.66
83 84 6.570378 GCAGTAATACCAAATGCAACTCAAGT 60.570 38.462 0.00 0.00 36.88 3.16
84 85 5.801947 GCAGTAATACCAAATGCAACTCAAG 59.198 40.000 0.00 0.00 36.88 3.02
85 86 5.618863 CGCAGTAATACCAAATGCAACTCAA 60.619 40.000 0.00 0.00 36.70 3.02
86 87 4.142708 CGCAGTAATACCAAATGCAACTCA 60.143 41.667 0.00 0.00 36.70 3.41
87 88 4.094294 TCGCAGTAATACCAAATGCAACTC 59.906 41.667 0.00 0.00 36.70 3.01
88 89 4.006989 TCGCAGTAATACCAAATGCAACT 58.993 39.130 0.00 0.00 36.70 3.16
89 90 4.349663 TCGCAGTAATACCAAATGCAAC 57.650 40.909 0.00 0.00 36.70 4.17
90 91 5.574891 ATTCGCAGTAATACCAAATGCAA 57.425 34.783 0.00 0.00 36.70 4.08
91 92 5.339177 CAATTCGCAGTAATACCAAATGCA 58.661 37.500 0.00 0.00 36.70 3.96
92 93 4.739716 CCAATTCGCAGTAATACCAAATGC 59.260 41.667 0.00 0.00 0.00 3.56
93 94 6.130298 TCCAATTCGCAGTAATACCAAATG 57.870 37.500 0.00 0.00 0.00 2.32
94 95 6.321181 ACATCCAATTCGCAGTAATACCAAAT 59.679 34.615 0.00 0.00 0.00 2.32
95 96 5.650266 ACATCCAATTCGCAGTAATACCAAA 59.350 36.000 0.00 0.00 0.00 3.28
96 97 5.189928 ACATCCAATTCGCAGTAATACCAA 58.810 37.500 0.00 0.00 0.00 3.67
97 98 4.776349 ACATCCAATTCGCAGTAATACCA 58.224 39.130 0.00 0.00 0.00 3.25
98 99 5.057149 AGACATCCAATTCGCAGTAATACC 58.943 41.667 0.00 0.00 0.00 2.73
99 100 5.986135 AGAGACATCCAATTCGCAGTAATAC 59.014 40.000 0.00 0.00 0.00 1.89
100 101 6.161855 AGAGACATCCAATTCGCAGTAATA 57.838 37.500 0.00 0.00 0.00 0.98
101 102 5.028549 AGAGACATCCAATTCGCAGTAAT 57.971 39.130 0.00 0.00 0.00 1.89
102 103 4.471904 AGAGACATCCAATTCGCAGTAA 57.528 40.909 0.00 0.00 0.00 2.24
103 104 4.471904 AAGAGACATCCAATTCGCAGTA 57.528 40.909 0.00 0.00 0.00 2.74
104 105 3.340814 AAGAGACATCCAATTCGCAGT 57.659 42.857 0.00 0.00 0.00 4.40
105 106 4.691860 AAAAGAGACATCCAATTCGCAG 57.308 40.909 0.00 0.00 0.00 5.18
106 107 6.567687 TTAAAAAGAGACATCCAATTCGCA 57.432 33.333 0.00 0.00 0.00 5.10
107 108 7.475840 AGATTAAAAAGAGACATCCAATTCGC 58.524 34.615 0.00 0.00 0.00 4.70
112 113 9.958180 TGACATAGATTAAAAAGAGACATCCAA 57.042 29.630 0.00 0.00 0.00 3.53
117 118 9.302345 GTCGATGACATAGATTAAAAAGAGACA 57.698 33.333 1.35 0.00 32.09 3.41
118 119 9.522804 AGTCGATGACATAGATTAAAAAGAGAC 57.477 33.333 1.35 0.00 34.60 3.36
119 120 9.521503 CAGTCGATGACATAGATTAAAAAGAGA 57.478 33.333 1.35 0.00 34.60 3.10
120 121 8.272176 GCAGTCGATGACATAGATTAAAAAGAG 58.728 37.037 1.35 0.00 34.60 2.85
121 122 7.224753 GGCAGTCGATGACATAGATTAAAAAGA 59.775 37.037 1.35 0.00 36.67 2.52
122 123 7.225538 AGGCAGTCGATGACATAGATTAAAAAG 59.774 37.037 1.35 0.00 40.68 2.27
123 124 7.047891 AGGCAGTCGATGACATAGATTAAAAA 58.952 34.615 1.35 0.00 40.68 1.94
124 125 6.582636 AGGCAGTCGATGACATAGATTAAAA 58.417 36.000 1.35 0.00 40.68 1.52
125 126 6.161855 AGGCAGTCGATGACATAGATTAAA 57.838 37.500 1.35 0.00 40.68 1.52
126 127 5.791336 AGGCAGTCGATGACATAGATTAA 57.209 39.130 1.35 0.00 40.68 1.40
127 128 6.294564 GGTTAGGCAGTCGATGACATAGATTA 60.295 42.308 1.35 0.00 40.68 1.75
128 129 5.509840 GGTTAGGCAGTCGATGACATAGATT 60.510 44.000 1.35 0.00 40.68 2.40
129 130 4.021894 GGTTAGGCAGTCGATGACATAGAT 60.022 45.833 1.35 0.00 40.68 1.98
130 131 3.318275 GGTTAGGCAGTCGATGACATAGA 59.682 47.826 0.00 0.00 40.68 1.98
131 132 3.068165 TGGTTAGGCAGTCGATGACATAG 59.932 47.826 0.00 0.00 40.68 2.23
142 143 2.912956 TGGAAAGAGATGGTTAGGCAGT 59.087 45.455 0.00 0.00 0.00 4.40
144 145 2.356125 GCTGGAAAGAGATGGTTAGGCA 60.356 50.000 0.00 0.00 0.00 4.75
164 165 2.921754 ACGAATGTAGTAGCAACGAAGC 59.078 45.455 0.00 0.00 0.00 3.86
195 196 5.126384 TGAAAGGTTACCTGAAAACACCTTG 59.874 40.000 3.99 0.00 45.33 3.61
199 200 7.262048 TGAATTGAAAGGTTACCTGAAAACAC 58.738 34.615 3.99 0.00 32.13 3.32
233 234 4.343814 GTCCCCCAAGAAAAACATTCTCAA 59.656 41.667 0.00 0.00 0.00 3.02
235 236 4.152647 AGTCCCCCAAGAAAAACATTCTC 58.847 43.478 0.00 0.00 0.00 2.87
236 237 4.199002 AGTCCCCCAAGAAAAACATTCT 57.801 40.909 0.00 0.00 0.00 2.40
237 238 4.503123 CCAAGTCCCCCAAGAAAAACATTC 60.503 45.833 0.00 0.00 0.00 2.67
238 239 3.390967 CCAAGTCCCCCAAGAAAAACATT 59.609 43.478 0.00 0.00 0.00 2.71
239 240 2.972021 CCAAGTCCCCCAAGAAAAACAT 59.028 45.455 0.00 0.00 0.00 2.71
240 241 2.023888 TCCAAGTCCCCCAAGAAAAACA 60.024 45.455 0.00 0.00 0.00 2.83
241 242 2.628178 CTCCAAGTCCCCCAAGAAAAAC 59.372 50.000 0.00 0.00 0.00 2.43
242 243 2.516277 TCTCCAAGTCCCCCAAGAAAAA 59.484 45.455 0.00 0.00 0.00 1.94
243 244 2.140224 TCTCCAAGTCCCCCAAGAAAA 58.860 47.619 0.00 0.00 0.00 2.29
244 245 1.827792 TCTCCAAGTCCCCCAAGAAA 58.172 50.000 0.00 0.00 0.00 2.52
245 246 1.827792 TTCTCCAAGTCCCCCAAGAA 58.172 50.000 0.00 0.00 0.00 2.52
246 247 1.827792 TTTCTCCAAGTCCCCCAAGA 58.172 50.000 0.00 0.00 0.00 3.02
247 248 2.225117 ACATTTCTCCAAGTCCCCCAAG 60.225 50.000 0.00 0.00 0.00 3.61
248 249 1.786441 ACATTTCTCCAAGTCCCCCAA 59.214 47.619 0.00 0.00 0.00 4.12
249 250 1.455822 ACATTTCTCCAAGTCCCCCA 58.544 50.000 0.00 0.00 0.00 4.96
250 251 2.604912 AACATTTCTCCAAGTCCCCC 57.395 50.000 0.00 0.00 0.00 5.40
251 252 3.496331 TGAAACATTTCTCCAAGTCCCC 58.504 45.455 5.97 0.00 38.02 4.81
252 253 5.728637 ATTGAAACATTTCTCCAAGTCCC 57.271 39.130 5.97 0.00 38.02 4.46
253 254 6.748132 TGAATTGAAACATTTCTCCAAGTCC 58.252 36.000 5.97 0.00 38.02 3.85
254 255 7.651808 TCTGAATTGAAACATTTCTCCAAGTC 58.348 34.615 5.97 0.00 38.02 3.01
255 256 7.587037 TCTGAATTGAAACATTTCTCCAAGT 57.413 32.000 5.97 0.00 38.02 3.16
256 257 8.301720 TCATCTGAATTGAAACATTTCTCCAAG 58.698 33.333 5.97 0.00 38.02 3.61
257 258 8.180706 TCATCTGAATTGAAACATTTCTCCAA 57.819 30.769 5.97 0.00 38.02 3.53
258 259 7.764141 TCATCTGAATTGAAACATTTCTCCA 57.236 32.000 5.97 0.00 38.02 3.86
259 260 8.684520 AGATCATCTGAATTGAAACATTTCTCC 58.315 33.333 5.97 0.00 38.02 3.71
273 274 6.821616 AGACCAGGTTTAGATCATCTGAAT 57.178 37.500 0.00 0.00 0.00 2.57
280 281 4.141482 GCCCATAAGACCAGGTTTAGATCA 60.141 45.833 0.00 0.00 0.00 2.92
296 297 3.244078 CGAACTGCAGTATAGGCCCATAA 60.244 47.826 22.01 0.00 0.00 1.90
338 339 3.690475 ACTGTTCTCTGCACATGATGA 57.310 42.857 0.00 0.00 0.00 2.92
339 340 4.502016 ACTACTGTTCTCTGCACATGATG 58.498 43.478 0.00 0.00 0.00 3.07
340 341 4.815533 ACTACTGTTCTCTGCACATGAT 57.184 40.909 0.00 0.00 0.00 2.45
348 349 5.122396 GGCCATGTTTTACTACTGTTCTCTG 59.878 44.000 0.00 0.00 0.00 3.35
351 352 4.332828 GGGCCATGTTTTACTACTGTTCT 58.667 43.478 4.39 0.00 0.00 3.01
355 356 2.014128 CCGGGCCATGTTTTACTACTG 58.986 52.381 4.39 0.00 0.00 2.74
356 357 1.680860 GCCGGGCCATGTTTTACTACT 60.681 52.381 8.12 0.00 0.00 2.57
371 372 3.069729 AGCTATTAACAGAGTAAGCCGGG 59.930 47.826 2.18 0.00 0.00 5.73
372 373 4.323553 AGCTATTAACAGAGTAAGCCGG 57.676 45.455 0.00 0.00 0.00 6.13
373 374 5.348986 TGAAGCTATTAACAGAGTAAGCCG 58.651 41.667 0.00 0.00 0.00 5.52
374 375 9.145865 GATATGAAGCTATTAACAGAGTAAGCC 57.854 37.037 0.00 0.00 0.00 4.35
375 376 9.921637 AGATATGAAGCTATTAACAGAGTAAGC 57.078 33.333 0.00 0.00 0.00 3.09
458 460 1.805945 CGTTGGTCTAGCGCTGGTC 60.806 63.158 22.90 15.48 0.00 4.02
535 537 0.401738 CCCGACTGCCCCATCATAAT 59.598 55.000 0.00 0.00 0.00 1.28
577 579 5.652891 AGAGTCGACGCTCCCATAAATATAT 59.347 40.000 16.64 0.00 36.20 0.86
581 583 2.032620 AGAGTCGACGCTCCCATAAAT 58.967 47.619 16.64 0.00 36.20 1.40
639 641 0.905357 GCTTCTCTGTTGGCTAGGGA 59.095 55.000 0.00 0.00 0.00 4.20
649 651 1.079543 AATGCGAGCGCTTCTCTGT 60.080 52.632 13.26 0.00 42.51 3.41
704 706 1.440938 CCACCGTTTTGCAGTCCGAA 61.441 55.000 2.99 0.00 0.00 4.30
742 744 2.223900 GCTCCATAGCTTGCCAAATTCC 60.224 50.000 0.00 0.00 45.85 3.01
871 875 2.187946 GGCCACCACCGAGAGATG 59.812 66.667 0.00 0.00 0.00 2.90
914 918 6.490721 TGTTTACAAGGACGGATGGTAAATTT 59.509 34.615 0.00 0.00 36.62 1.82
1008 1012 1.370810 CAAGCCGGGCCATGTTTTT 59.629 52.632 17.02 0.00 0.00 1.94
1009 1013 2.582493 CCAAGCCGGGCCATGTTTT 61.582 57.895 17.02 0.00 0.00 2.43
1010 1014 2.803593 ATCCAAGCCGGGCCATGTTT 62.804 55.000 17.02 0.00 34.36 2.83
1011 1015 2.803593 AATCCAAGCCGGGCCATGTT 62.804 55.000 17.02 0.00 34.36 2.71
1012 1016 2.803593 AAATCCAAGCCGGGCCATGT 62.804 55.000 17.02 0.00 34.36 3.21
1013 1017 2.059786 AAATCCAAGCCGGGCCATG 61.060 57.895 17.02 15.15 34.36 3.66
1014 1018 2.059786 CAAATCCAAGCCGGGCCAT 61.060 57.895 17.02 1.48 34.36 4.40
1015 1019 2.679642 CAAATCCAAGCCGGGCCA 60.680 61.111 17.02 0.00 34.36 5.36
1016 1020 3.460868 CCAAATCCAAGCCGGGCC 61.461 66.667 17.02 0.00 34.36 5.80
1017 1021 2.362375 TCCAAATCCAAGCCGGGC 60.362 61.111 12.11 12.11 34.36 6.13
1018 1022 2.418083 GCTCCAAATCCAAGCCGGG 61.418 63.158 2.18 0.00 34.36 5.73
1109 1113 1.551452 CGAAGAACCAGAGAGGAGGT 58.449 55.000 0.00 0.00 41.22 3.85
1111 1115 0.174617 GGCGAAGAACCAGAGAGGAG 59.825 60.000 0.00 0.00 41.22 3.69
1114 1118 1.219393 GGGGCGAAGAACCAGAGAG 59.781 63.158 0.00 0.00 0.00 3.20
1161 1169 2.187946 GATGGAGGACACCGCCTG 59.812 66.667 11.40 0.00 44.04 4.85
1164 1172 2.105128 CTCGATGGAGGACACCGC 59.895 66.667 0.00 0.00 36.61 5.68
1174 1182 1.144936 GAGGGAAGCACCTCGATGG 59.855 63.158 6.40 0.00 46.81 3.51
1183 1191 0.341258 AGAGAGGATGGAGGGAAGCA 59.659 55.000 0.00 0.00 0.00 3.91
1184 1192 1.047801 GAGAGAGGATGGAGGGAAGC 58.952 60.000 0.00 0.00 0.00 3.86
1185 1193 1.062581 TGGAGAGAGGATGGAGGGAAG 60.063 57.143 0.00 0.00 0.00 3.46
1186 1194 1.018840 TGGAGAGAGGATGGAGGGAA 58.981 55.000 0.00 0.00 0.00 3.97
1187 1195 1.249195 ATGGAGAGAGGATGGAGGGA 58.751 55.000 0.00 0.00 0.00 4.20
1188 1196 2.115337 AATGGAGAGAGGATGGAGGG 57.885 55.000 0.00 0.00 0.00 4.30
1189 1197 3.715834 AGAAAATGGAGAGAGGATGGAGG 59.284 47.826 0.00 0.00 0.00 4.30
1190 1198 4.202346 GGAGAAAATGGAGAGAGGATGGAG 60.202 50.000 0.00 0.00 0.00 3.86
1191 1199 3.713764 GGAGAAAATGGAGAGAGGATGGA 59.286 47.826 0.00 0.00 0.00 3.41
1192 1200 3.715834 AGGAGAAAATGGAGAGAGGATGG 59.284 47.826 0.00 0.00 0.00 3.51
1193 1201 4.163839 ACAGGAGAAAATGGAGAGAGGATG 59.836 45.833 0.00 0.00 0.00 3.51
1194 1202 4.369872 ACAGGAGAAAATGGAGAGAGGAT 58.630 43.478 0.00 0.00 0.00 3.24
1195 1203 3.772025 GACAGGAGAAAATGGAGAGAGGA 59.228 47.826 0.00 0.00 0.00 3.71
1196 1204 3.118445 GGACAGGAGAAAATGGAGAGAGG 60.118 52.174 0.00 0.00 0.00 3.69
1197 1205 3.118445 GGGACAGGAGAAAATGGAGAGAG 60.118 52.174 0.00 0.00 0.00 3.20
1198 1206 2.840651 GGGACAGGAGAAAATGGAGAGA 59.159 50.000 0.00 0.00 0.00 3.10
1199 1207 2.092699 GGGGACAGGAGAAAATGGAGAG 60.093 54.545 0.00 0.00 0.00 3.20
1200 1208 1.916181 GGGGACAGGAGAAAATGGAGA 59.084 52.381 0.00 0.00 0.00 3.71
1201 1209 1.918957 AGGGGACAGGAGAAAATGGAG 59.081 52.381 0.00 0.00 0.00 3.86
1202 1210 1.916181 GAGGGGACAGGAGAAAATGGA 59.084 52.381 0.00 0.00 0.00 3.41
1203 1211 1.918957 AGAGGGGACAGGAGAAAATGG 59.081 52.381 0.00 0.00 0.00 3.16
1204 1212 2.843113 AGAGAGGGGACAGGAGAAAATG 59.157 50.000 0.00 0.00 0.00 2.32
1205 1213 2.843113 CAGAGAGGGGACAGGAGAAAAT 59.157 50.000 0.00 0.00 0.00 1.82
1206 1214 2.260822 CAGAGAGGGGACAGGAGAAAA 58.739 52.381 0.00 0.00 0.00 2.29
1207 1215 1.150135 ACAGAGAGGGGACAGGAGAAA 59.850 52.381 0.00 0.00 0.00 2.52
1208 1216 0.787084 ACAGAGAGGGGACAGGAGAA 59.213 55.000 0.00 0.00 0.00 2.87
1209 1217 1.682478 TACAGAGAGGGGACAGGAGA 58.318 55.000 0.00 0.00 0.00 3.71
1210 1218 2.315176 CATACAGAGAGGGGACAGGAG 58.685 57.143 0.00 0.00 0.00 3.69
1211 1219 1.689575 GCATACAGAGAGGGGACAGGA 60.690 57.143 0.00 0.00 0.00 3.86
1212 1220 0.755686 GCATACAGAGAGGGGACAGG 59.244 60.000 0.00 0.00 0.00 4.00
1213 1221 1.411977 CAGCATACAGAGAGGGGACAG 59.588 57.143 0.00 0.00 0.00 3.51
1214 1222 1.489481 CAGCATACAGAGAGGGGACA 58.511 55.000 0.00 0.00 0.00 4.02
1428 1436 6.920569 ATACTATTGGGAATCAACACGAAC 57.079 37.500 0.00 0.00 38.31 3.95
1506 1802 3.067106 GACGCAGAATTTCCAGAGAACA 58.933 45.455 0.00 0.00 0.00 3.18
1507 1803 3.124297 CAGACGCAGAATTTCCAGAGAAC 59.876 47.826 0.00 0.00 0.00 3.01
1662 1961 1.765904 TCAACCAACACCTAGTGCTCA 59.234 47.619 0.00 0.00 36.98 4.26
1668 1967 2.231235 GGGCATTTCAACCAACACCTAG 59.769 50.000 0.00 0.00 0.00 3.02
1677 1976 0.608035 TCGTCTGGGGCATTTCAACC 60.608 55.000 0.00 0.00 0.00 3.77
1679 1978 0.400213 ACTCGTCTGGGGCATTTCAA 59.600 50.000 0.00 0.00 0.00 2.69
1725 2024 2.930826 ACCTATACGGCCCAGAAATG 57.069 50.000 0.00 0.00 35.61 2.32
1735 2034 6.813649 CCATGATCACAGATTTACCTATACGG 59.186 42.308 0.00 0.00 39.35 4.02
1736 2035 7.378966 ACCATGATCACAGATTTACCTATACG 58.621 38.462 0.00 0.00 0.00 3.06
1739 2038 7.577303 ACAACCATGATCACAGATTTACCTAT 58.423 34.615 0.00 0.00 0.00 2.57
1849 2149 7.609918 CGGGGGAATATCATTATGTTATTGACA 59.390 37.037 11.79 0.00 43.71 3.58
1865 2165 1.132817 AGGCTACACTCGGGGGAATAT 60.133 52.381 0.00 0.00 0.00 1.28
1870 2170 2.683933 ACAGGCTACACTCGGGGG 60.684 66.667 0.00 0.00 0.00 5.40
2048 2349 0.323725 ATTGCATCACCAGACACCCC 60.324 55.000 0.00 0.00 0.00 4.95
2072 2376 7.039993 TGCTACTGCTTCTACATCGGAAATATA 60.040 37.037 0.00 0.00 40.48 0.86
2080 2474 5.098893 GGATATGCTACTGCTTCTACATCG 58.901 45.833 0.00 0.00 40.48 3.84
2483 2878 6.630071 AGAACGGCAAACATAATTAGCAAAT 58.370 32.000 0.00 0.00 0.00 2.32
2501 2896 3.045601 ACTCATCTGGACAAAGAACGG 57.954 47.619 0.00 0.00 0.00 4.44
2561 2956 9.846248 ACTTAATCTTTTGCTTATCATCACAAC 57.154 29.630 0.00 0.00 0.00 3.32
2622 3017 4.035324 GTCATGTCAAGCATCTCATCAAGG 59.965 45.833 0.00 0.00 35.19 3.61
2691 3086 5.049818 CGATGAATTCAAGGGAGATAACTGC 60.050 44.000 13.09 0.00 0.00 4.40
2765 3161 1.798813 CGAAAAGTCCAGCACACCTAC 59.201 52.381 0.00 0.00 0.00 3.18
2817 3214 1.875576 GCCCATCTAACCTGATCTGCG 60.876 57.143 0.00 0.00 0.00 5.18
2868 3265 1.004277 TGTAATCTGGACCTTGTGCCC 59.996 52.381 0.00 0.00 0.00 5.36
2870 3267 4.702131 AGAAATGTAATCTGGACCTTGTGC 59.298 41.667 0.00 0.00 0.00 4.57
2888 3285 7.595819 TCAATCCCAGTGTTTTACAAGAAAT 57.404 32.000 0.00 0.00 0.00 2.17
2924 3321 2.835764 AGGGTAGTTGCGATAAAGTGGA 59.164 45.455 0.00 0.00 0.00 4.02
2925 3322 3.261981 AGGGTAGTTGCGATAAAGTGG 57.738 47.619 0.00 0.00 0.00 4.00
2926 3323 4.201685 CGAAAGGGTAGTTGCGATAAAGTG 60.202 45.833 0.00 0.00 0.00 3.16
2927 3324 3.930848 CGAAAGGGTAGTTGCGATAAAGT 59.069 43.478 0.00 0.00 0.00 2.66
2928 3325 3.930848 ACGAAAGGGTAGTTGCGATAAAG 59.069 43.478 0.00 0.00 0.00 1.85
2929 3326 3.929094 ACGAAAGGGTAGTTGCGATAAA 58.071 40.909 0.00 0.00 0.00 1.40
2930 3327 3.598019 ACGAAAGGGTAGTTGCGATAA 57.402 42.857 0.00 0.00 0.00 1.75
2931 3328 4.924305 ATACGAAAGGGTAGTTGCGATA 57.076 40.909 0.00 0.00 0.00 2.92
2967 3364 4.571984 CACACACAGAAAACACTCATCAGA 59.428 41.667 0.00 0.00 0.00 3.27
2999 3396 8.133627 GGAATCTGATTTCAATCGAATGAACAT 58.866 33.333 15.35 11.73 38.95 2.71
3005 3402 7.278135 TCTCTGGAATCTGATTTCAATCGAAT 58.722 34.615 12.25 0.00 38.26 3.34
3023 3420 3.248024 ACAACCATACAACCTCTCTGGA 58.752 45.455 0.00 0.00 39.71 3.86
3062 3459 1.831652 AACTGAAGGGCACGAGGAGG 61.832 60.000 0.00 0.00 0.00 4.30
3064 3461 1.207089 CATAACTGAAGGGCACGAGGA 59.793 52.381 0.00 0.00 0.00 3.71
3065 3462 1.066143 ACATAACTGAAGGGCACGAGG 60.066 52.381 0.00 0.00 0.00 4.63
3086 3483 8.072567 GCCTACTACAAATGATTCTAAGCAATG 58.927 37.037 0.00 0.00 0.00 2.82
3087 3484 7.995488 AGCCTACTACAAATGATTCTAAGCAAT 59.005 33.333 0.00 0.00 0.00 3.56
3088 3485 7.338710 AGCCTACTACAAATGATTCTAAGCAA 58.661 34.615 0.00 0.00 0.00 3.91
3089 3486 6.889198 AGCCTACTACAAATGATTCTAAGCA 58.111 36.000 0.00 0.00 0.00 3.91
3090 3487 7.213678 AGAGCCTACTACAAATGATTCTAAGC 58.786 38.462 0.00 0.00 0.00 3.09
3091 3488 9.906660 CTAGAGCCTACTACAAATGATTCTAAG 57.093 37.037 0.00 0.00 0.00 2.18
3092 3489 8.361139 GCTAGAGCCTACTACAAATGATTCTAA 58.639 37.037 0.00 0.00 34.31 2.10
3093 3490 7.726291 AGCTAGAGCCTACTACAAATGATTCTA 59.274 37.037 0.00 0.00 43.38 2.10
3094 3491 6.553100 AGCTAGAGCCTACTACAAATGATTCT 59.447 38.462 0.00 0.00 43.38 2.40
3095 3492 6.754193 AGCTAGAGCCTACTACAAATGATTC 58.246 40.000 0.00 0.00 43.38 2.52
3096 3493 6.739331 AGCTAGAGCCTACTACAAATGATT 57.261 37.500 0.00 0.00 43.38 2.57
3097 3494 6.739331 AAGCTAGAGCCTACTACAAATGAT 57.261 37.500 0.00 0.00 43.38 2.45
3098 3495 6.546428 AAAGCTAGAGCCTACTACAAATGA 57.454 37.500 0.00 0.00 43.38 2.57
3099 3496 6.818644 TCAAAAGCTAGAGCCTACTACAAATG 59.181 38.462 0.00 0.00 43.38 2.32
3100 3497 6.947464 TCAAAAGCTAGAGCCTACTACAAAT 58.053 36.000 0.00 0.00 43.38 2.32
3101 3498 6.354794 TCAAAAGCTAGAGCCTACTACAAA 57.645 37.500 0.00 0.00 43.38 2.83
3102 3499 5.995565 TCAAAAGCTAGAGCCTACTACAA 57.004 39.130 0.00 0.00 43.38 2.41
3103 3500 5.995565 TTCAAAAGCTAGAGCCTACTACA 57.004 39.130 0.00 0.00 43.38 2.74
3104 3501 6.574350 TGATTCAAAAGCTAGAGCCTACTAC 58.426 40.000 0.00 0.00 43.38 2.73
3105 3502 6.791867 TGATTCAAAAGCTAGAGCCTACTA 57.208 37.500 0.00 0.00 43.38 1.82
3106 3503 5.683876 TGATTCAAAAGCTAGAGCCTACT 57.316 39.130 0.00 0.00 43.38 2.57
3107 3504 6.051717 TGATGATTCAAAAGCTAGAGCCTAC 58.948 40.000 0.00 0.00 43.38 3.18
3108 3505 6.239217 TGATGATTCAAAAGCTAGAGCCTA 57.761 37.500 0.00 0.00 43.38 3.93
3109 3506 5.108187 TGATGATTCAAAAGCTAGAGCCT 57.892 39.130 0.00 0.00 43.38 4.58
3110 3507 7.684937 ATATGATGATTCAAAAGCTAGAGCC 57.315 36.000 0.00 0.00 37.28 4.70
3116 3513 9.525409 GCTTGTAAATATGATGATTCAAAAGCT 57.475 29.630 0.00 0.00 34.96 3.74
3117 3514 8.758715 GGCTTGTAAATATGATGATTCAAAAGC 58.241 33.333 0.00 0.00 34.96 3.51
3121 3518 9.851686 AGTAGGCTTGTAAATATGATGATTCAA 57.148 29.630 0.00 0.00 34.96 2.69
3122 3519 9.276590 CAGTAGGCTTGTAAATATGATGATTCA 57.723 33.333 0.00 0.00 36.00 2.57
3123 3520 8.233190 GCAGTAGGCTTGTAAATATGATGATTC 58.767 37.037 0.00 0.00 40.25 2.52
3124 3521 7.720957 TGCAGTAGGCTTGTAAATATGATGATT 59.279 33.333 0.00 0.00 45.15 2.57
3125 3522 7.226441 TGCAGTAGGCTTGTAAATATGATGAT 58.774 34.615 0.00 0.00 45.15 2.45
3126 3523 6.591001 TGCAGTAGGCTTGTAAATATGATGA 58.409 36.000 0.00 0.00 45.15 2.92
3145 3542 2.095919 GGAAATACTTCGCGTTTGCAGT 60.096 45.455 5.77 4.53 42.97 4.40
3151 3548 6.046593 TCTGAATATGGAAATACTTCGCGTT 58.953 36.000 5.77 0.00 31.77 4.84
3153 3550 6.525121 TTCTGAATATGGAAATACTTCGCG 57.475 37.500 0.00 0.00 31.77 5.87
3193 3590 1.398390 CGATAAGCAGGTTTCACAGGC 59.602 52.381 0.00 0.00 0.00 4.85
3203 3600 0.394192 TGCATCCCTCGATAAGCAGG 59.606 55.000 0.00 0.00 0.00 4.85
3244 3641 4.404073 AGAACAACAAAACCAACTGCCATA 59.596 37.500 0.00 0.00 0.00 2.74
3320 3717 7.706179 GCCAAACACAGTAATTTATGCATGTAT 59.294 33.333 10.16 0.82 0.00 2.29
3336 3733 7.292292 CAAATTTTACATGATGCCAAACACAG 58.708 34.615 0.00 0.00 0.00 3.66
3364 3761 5.818136 TGTATCCTCTAACAGCAAAATGC 57.182 39.130 0.00 0.00 45.46 3.56
3365 3762 7.144722 TGTTGTATCCTCTAACAGCAAAATG 57.855 36.000 0.00 0.00 34.47 2.32
3366 3763 7.759489 TTGTTGTATCCTCTAACAGCAAAAT 57.241 32.000 2.83 0.00 41.74 1.82
3367 3764 7.575414 TTTGTTGTATCCTCTAACAGCAAAA 57.425 32.000 12.87 1.08 46.67 2.44
3369 3766 7.094377 GGATTTTGTTGTATCCTCTAACAGCAA 60.094 37.037 1.37 1.37 42.58 3.91
3376 3773 5.943349 TCCGGATTTTGTTGTATCCTCTA 57.057 39.130 0.00 0.00 38.53 2.43
3440 3837 6.098124 AGAGAAATCTCACTTATGCAGCTAGT 59.902 38.462 12.65 0.00 45.21 2.57
3441 3838 6.514947 AGAGAAATCTCACTTATGCAGCTAG 58.485 40.000 12.65 0.00 45.21 3.42
3442 3839 6.477053 AGAGAAATCTCACTTATGCAGCTA 57.523 37.500 12.65 0.00 45.21 3.32
3443 3840 5.356291 AGAGAAATCTCACTTATGCAGCT 57.644 39.130 12.65 0.00 45.21 4.24
3444 3841 6.511416 TCTAGAGAAATCTCACTTATGCAGC 58.489 40.000 12.65 0.00 45.21 5.25
3445 3842 7.939782 TCTCTAGAGAAATCTCACTTATGCAG 58.060 38.462 20.31 0.00 45.21 4.41
3446 3843 7.888250 TCTCTAGAGAAATCTCACTTATGCA 57.112 36.000 20.31 0.00 45.21 3.96
3472 3869 9.520515 ACAAAGATCCAAAGTATGTGAACTAAT 57.479 29.630 0.00 0.00 0.00 1.73
3473 3870 8.918202 ACAAAGATCCAAAGTATGTGAACTAA 57.082 30.769 0.00 0.00 0.00 2.24
3474 3871 8.783093 CAACAAAGATCCAAAGTATGTGAACTA 58.217 33.333 0.00 0.00 0.00 2.24
3475 3872 7.502226 TCAACAAAGATCCAAAGTATGTGAACT 59.498 33.333 0.00 0.00 0.00 3.01
3476 3873 7.648142 TCAACAAAGATCCAAAGTATGTGAAC 58.352 34.615 0.00 0.00 0.00 3.18
3563 3963 2.057137 AGCAGAAAGGCAGAACACAA 57.943 45.000 0.00 0.00 35.83 3.33
3575 3975 7.669722 AGAAGGTAAATGTGGAATTAGCAGAAA 59.330 33.333 0.00 0.00 33.18 2.52
3615 4015 3.370527 GGCTTCATTTCAGGCCTAGTACA 60.371 47.826 3.98 0.00 41.20 2.90
3623 4023 1.844687 AAGGAGGCTTCATTTCAGGC 58.155 50.000 0.00 0.00 37.08 4.85
3647 4047 8.800031 GCTGAACGAAGTACAATAAAACAAAAA 58.200 29.630 0.00 0.00 45.00 1.94
3648 4048 8.185505 AGCTGAACGAAGTACAATAAAACAAAA 58.814 29.630 0.00 0.00 45.00 2.44
3649 4049 7.699566 AGCTGAACGAAGTACAATAAAACAAA 58.300 30.769 0.00 0.00 45.00 2.83
3650 4050 7.254227 AGCTGAACGAAGTACAATAAAACAA 57.746 32.000 0.00 0.00 45.00 2.83
3651 4051 6.854496 AGCTGAACGAAGTACAATAAAACA 57.146 33.333 0.00 0.00 45.00 2.83
3652 4052 7.349711 TCAAGCTGAACGAAGTACAATAAAAC 58.650 34.615 0.00 0.00 45.00 2.43
3728 4130 7.277174 ACTTGTTACCAATCAGAGGAAAAAG 57.723 36.000 0.00 0.00 0.00 2.27
3734 4137 5.939883 TCATGAACTTGTTACCAATCAGAGG 59.060 40.000 0.00 0.00 0.00 3.69
3799 4202 3.304057 GCACACAGAAGCTAACCAGAAAC 60.304 47.826 0.00 0.00 0.00 2.78
3820 4223 4.159506 AGGAATGTCTGAGAGAACAGTAGC 59.840 45.833 0.00 0.00 38.79 3.58
3835 4238 3.281727 TCTTGGCCATACAGGAATGTC 57.718 47.619 6.09 0.00 41.22 3.06
3878 4281 6.399639 AAACCACGACACTTATTTTGGAAT 57.600 33.333 0.00 0.00 0.00 3.01
3881 4284 6.731164 ACTAAAACCACGACACTTATTTTGG 58.269 36.000 0.00 0.00 0.00 3.28
3922 4325 3.683822 ACGTGTCGTGGTTTTAGTTCAAA 59.316 39.130 0.00 0.00 39.18 2.69
3923 4326 3.260740 ACGTGTCGTGGTTTTAGTTCAA 58.739 40.909 0.00 0.00 39.18 2.69
3924 4327 2.891112 ACGTGTCGTGGTTTTAGTTCA 58.109 42.857 0.00 0.00 39.18 3.18
3936 4339 2.699628 CGTAACAAAACACGTGTCGT 57.300 45.000 23.61 16.43 42.36 4.34
3943 4346 5.928264 ACATACTCCCTACGTAACAAAACAC 59.072 40.000 0.00 0.00 0.00 3.32
3945 4348 7.425577 AAACATACTCCCTACGTAACAAAAC 57.574 36.000 0.00 0.00 0.00 2.43
3986 4389 6.184015 CACCGACAAAAACAAAATGACAATG 58.816 36.000 0.00 0.00 0.00 2.82
4036 4439 2.174639 ACTGAACTCATGGGGTTTGTGA 59.825 45.455 0.00 0.00 0.00 3.58
4049 4452 6.305693 ACTCTGCAACAAATTACTGAACTC 57.694 37.500 0.00 0.00 0.00 3.01
4067 4470 5.813383 AGCCCCAAATCATGATATACTCTG 58.187 41.667 9.04 0.45 0.00 3.35
4087 4490 0.514691 CGTGCTTGAAGTTCAGAGCC 59.485 55.000 24.57 18.33 33.02 4.70
4092 4495 1.804151 GGTATGCGTGCTTGAAGTTCA 59.196 47.619 0.08 0.08 0.00 3.18
4108 4511 0.681733 CAGGATAGGCGTGCAGGTAT 59.318 55.000 8.40 0.00 0.00 2.73
4118 4521 4.202441 CACCCATTATATGCAGGATAGGC 58.798 47.826 0.00 0.00 0.00 3.93
4125 4528 4.568956 TCGATCACACCCATTATATGCAG 58.431 43.478 0.00 0.00 0.00 4.41
4142 4545 3.543680 TTGAATCACTCCCCTTCGATC 57.456 47.619 0.00 0.00 0.00 3.69
4198 4601 8.964476 ACACTCAAAATATCCATTACCAGTAG 57.036 34.615 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.