Multiple sequence alignment - TraesCS6D01G233200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G233200 chr6D 100.000 5201 0 0 1 5201 327210733 327205533 0.000000e+00 9605.0
1 TraesCS6D01G233200 chr6A 95.272 4928 145 20 351 5201 465938471 465933555 0.000000e+00 7729.0
2 TraesCS6D01G233200 chr6B 93.339 4939 209 47 351 5201 494423525 494428431 0.000000e+00 7188.0
3 TraesCS6D01G233200 chr5A 95.238 168 8 0 1 168 285661619 285661786 3.090000e-67 267.0
4 TraesCS6D01G233200 chr5A 74.194 310 52 16 447 735 10213206 10212904 2.560000e-18 104.0
5 TraesCS6D01G233200 chr4D 95.210 167 8 0 1 167 324134208 324134374 1.110000e-66 265.0
6 TraesCS6D01G233200 chr4B 92.857 182 13 0 1 182 376497444 376497263 1.110000e-66 265.0
7 TraesCS6D01G233200 chr5D 94.186 172 10 0 1 172 531966153 531966324 3.990000e-66 263.0
8 TraesCS6D01G233200 chr5D 94.643 168 9 0 1 168 426511236 426511403 1.440000e-65 261.0
9 TraesCS6D01G233200 chr5D 93.220 177 11 1 3 179 228283756 228283931 5.170000e-65 259.0
10 TraesCS6D01G233200 chr5D 94.578 166 9 0 1 166 201181912 201182077 1.860000e-64 257.0
11 TraesCS6D01G233200 chr5D 91.005 189 16 1 1 189 478935406 478935593 2.400000e-63 254.0
12 TraesCS6D01G233200 chr1D 94.675 169 9 0 1 169 104071418 104071586 3.990000e-66 263.0
13 TraesCS6D01G233200 chr1D 73.317 401 64 23 407 775 355729271 355729660 1.980000e-19 108.0
14 TraesCS6D01G233200 chr2D 80.000 90 8 4 407 486 388477717 388477806 2.020000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G233200 chr6D 327205533 327210733 5200 True 9605 9605 100.000 1 5201 1 chr6D.!!$R1 5200
1 TraesCS6D01G233200 chr6A 465933555 465938471 4916 True 7729 7729 95.272 351 5201 1 chr6A.!!$R1 4850
2 TraesCS6D01G233200 chr6B 494423525 494428431 4906 False 7188 7188 93.339 351 5201 1 chr6B.!!$F1 4850

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
229 230 0.031616 TTTGGGTTTGGAGGCAACCT 60.032 50.000 4.68 0.00 43.05 3.50 F
246 247 0.036294 CCTTCGAGGTTTGAGGGGTC 60.036 60.000 0.00 0.00 0.00 4.46 F
255 256 0.251742 TTTGAGGGGTCCAATGCTGG 60.252 55.000 0.00 0.00 45.08 4.85 F
270 271 0.734253 GCTGGCGCGGTGATAGATAG 60.734 60.000 8.83 0.00 0.00 2.08 F
1537 1594 0.815734 ACGCGCTCTACATGGTAAGT 59.184 50.000 5.73 0.00 0.00 2.24 F
2276 2359 2.556189 TGTTTGCCAAATACGCATGAGT 59.444 40.909 7.41 7.41 35.83 3.41 F
2356 2439 0.537188 ATTGCCTACGACCCACTGAG 59.463 55.000 0.00 0.00 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1835 1899 1.145738 AGGACCACAGAGCACCAAAAT 59.854 47.619 0.00 0.00 0.00 1.82 R
1983 2047 2.990066 ATAAGAAACCAGAGGCTCCG 57.010 50.000 11.71 0.00 0.00 4.63 R
2191 2255 3.066291 ACGGAAGAACCATTGTGCATA 57.934 42.857 0.00 0.00 38.90 3.14 R
2255 2338 2.556189 ACTCATGCGTATTTGGCAAACA 59.444 40.909 16.00 9.12 44.66 2.83 R
2344 2427 1.056660 ATGGAAACTCAGTGGGTCGT 58.943 50.000 0.00 0.00 0.00 4.34 R
3858 3944 2.093973 ACGCCGATCTCAAGATTTCACT 60.094 45.455 0.00 0.00 34.37 3.41 R
4218 4326 3.165071 CCAAGTTCCCCAAGCAAATAGT 58.835 45.455 0.00 0.00 0.00 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.246908 TCTTATCACACAACTATTTGTTACCG 57.753 34.615 0.00 0.00 43.89 4.02
38 39 8.089597 TCTTATCACACAACTATTTGTTACCGA 58.910 33.333 0.00 0.00 43.89 4.69
39 40 8.780846 TTATCACACAACTATTTGTTACCGAT 57.219 30.769 0.00 0.08 43.89 4.18
40 41 9.872721 TTATCACACAACTATTTGTTACCGATA 57.127 29.630 0.00 0.00 43.89 2.92
41 42 8.780846 ATCACACAACTATTTGTTACCGATAA 57.219 30.769 0.00 0.00 43.89 1.75
42 43 8.780846 TCACACAACTATTTGTTACCGATAAT 57.219 30.769 0.00 0.00 43.89 1.28
43 44 9.221933 TCACACAACTATTTGTTACCGATAATT 57.778 29.630 0.00 0.00 43.89 1.40
44 45 9.834628 CACACAACTATTTGTTACCGATAATTT 57.165 29.630 0.00 0.00 43.89 1.82
50 51 9.661563 ACTATTTGTTACCGATAATTTCAGTGA 57.338 29.630 0.00 0.00 0.00 3.41
53 54 9.787532 ATTTGTTACCGATAATTTCAGTGATTG 57.212 29.630 0.00 0.00 0.00 2.67
54 55 6.781138 TGTTACCGATAATTTCAGTGATTGC 58.219 36.000 0.00 0.00 0.00 3.56
55 56 6.372937 TGTTACCGATAATTTCAGTGATTGCA 59.627 34.615 0.00 0.00 0.00 4.08
56 57 5.490139 ACCGATAATTTCAGTGATTGCAG 57.510 39.130 0.00 0.00 0.00 4.41
57 58 5.185454 ACCGATAATTTCAGTGATTGCAGA 58.815 37.500 0.00 0.00 0.00 4.26
58 59 5.295292 ACCGATAATTTCAGTGATTGCAGAG 59.705 40.000 0.00 0.00 0.00 3.35
59 60 5.525012 CCGATAATTTCAGTGATTGCAGAGA 59.475 40.000 0.00 0.00 0.00 3.10
60 61 6.037500 CCGATAATTTCAGTGATTGCAGAGAA 59.962 38.462 0.00 0.00 0.00 2.87
61 62 7.255035 CCGATAATTTCAGTGATTGCAGAGAAT 60.255 37.037 0.00 0.00 0.00 2.40
62 63 8.768019 CGATAATTTCAGTGATTGCAGAGAATA 58.232 33.333 0.00 0.00 0.00 1.75
63 64 9.875675 GATAATTTCAGTGATTGCAGAGAATAC 57.124 33.333 0.00 0.00 0.00 1.89
64 65 7.934855 AATTTCAGTGATTGCAGAGAATACT 57.065 32.000 0.00 0.00 0.00 2.12
65 66 7.934855 ATTTCAGTGATTGCAGAGAATACTT 57.065 32.000 0.00 0.00 0.00 2.24
66 67 7.750229 TTTCAGTGATTGCAGAGAATACTTT 57.250 32.000 0.00 0.00 0.00 2.66
67 68 6.732531 TCAGTGATTGCAGAGAATACTTTG 57.267 37.500 0.00 0.00 0.00 2.77
76 77 5.157067 GCAGAGAATACTTTGCTGAAAACC 58.843 41.667 0.00 0.00 46.35 3.27
77 78 5.385617 CAGAGAATACTTTGCTGAAAACCG 58.614 41.667 0.00 0.00 0.00 4.44
78 79 4.083271 AGAGAATACTTTGCTGAAAACCGC 60.083 41.667 0.00 0.00 0.00 5.68
79 80 3.821033 AGAATACTTTGCTGAAAACCGCT 59.179 39.130 0.00 0.00 0.00 5.52
80 81 4.278419 AGAATACTTTGCTGAAAACCGCTT 59.722 37.500 0.00 0.00 0.00 4.68
81 82 2.208326 ACTTTGCTGAAAACCGCTTG 57.792 45.000 0.00 0.00 0.00 4.01
82 83 1.476488 ACTTTGCTGAAAACCGCTTGT 59.524 42.857 0.00 0.00 0.00 3.16
83 84 2.119457 CTTTGCTGAAAACCGCTTGTC 58.881 47.619 0.00 0.00 0.00 3.18
84 85 1.098869 TTGCTGAAAACCGCTTGTCA 58.901 45.000 0.00 0.00 0.00 3.58
85 86 1.317613 TGCTGAAAACCGCTTGTCAT 58.682 45.000 0.00 0.00 0.00 3.06
86 87 1.680735 TGCTGAAAACCGCTTGTCATT 59.319 42.857 0.00 0.00 0.00 2.57
87 88 2.100584 TGCTGAAAACCGCTTGTCATTT 59.899 40.909 0.00 0.00 0.00 2.32
88 89 2.726241 GCTGAAAACCGCTTGTCATTTC 59.274 45.455 0.00 0.00 0.00 2.17
89 90 3.550842 GCTGAAAACCGCTTGTCATTTCT 60.551 43.478 0.00 0.00 32.60 2.52
90 91 4.610945 CTGAAAACCGCTTGTCATTTCTT 58.389 39.130 0.00 0.00 32.60 2.52
91 92 5.004922 TGAAAACCGCTTGTCATTTCTTT 57.995 34.783 0.00 0.00 32.60 2.52
92 93 5.040635 TGAAAACCGCTTGTCATTTCTTTC 58.959 37.500 0.00 0.00 32.60 2.62
93 94 4.918810 AAACCGCTTGTCATTTCTTTCT 57.081 36.364 0.00 0.00 0.00 2.52
94 95 3.904136 ACCGCTTGTCATTTCTTTCTG 57.096 42.857 0.00 0.00 0.00 3.02
95 96 2.030805 ACCGCTTGTCATTTCTTTCTGC 60.031 45.455 0.00 0.00 0.00 4.26
96 97 2.227388 CCGCTTGTCATTTCTTTCTGCT 59.773 45.455 0.00 0.00 0.00 4.24
97 98 3.486584 CGCTTGTCATTTCTTTCTGCTC 58.513 45.455 0.00 0.00 0.00 4.26
98 99 3.669023 CGCTTGTCATTTCTTTCTGCTCC 60.669 47.826 0.00 0.00 0.00 4.70
99 100 3.505293 GCTTGTCATTTCTTTCTGCTCCT 59.495 43.478 0.00 0.00 0.00 3.69
100 101 4.379290 GCTTGTCATTTCTTTCTGCTCCTC 60.379 45.833 0.00 0.00 0.00 3.71
101 102 3.329386 TGTCATTTCTTTCTGCTCCTCG 58.671 45.455 0.00 0.00 0.00 4.63
102 103 2.095053 GTCATTTCTTTCTGCTCCTCGC 59.905 50.000 0.00 0.00 39.77 5.03
103 104 2.027745 TCATTTCTTTCTGCTCCTCGCT 60.028 45.455 0.00 0.00 40.11 4.93
104 105 1.800805 TTTCTTTCTGCTCCTCGCTG 58.199 50.000 0.00 0.00 40.11 5.18
105 106 0.036952 TTCTTTCTGCTCCTCGCTGG 60.037 55.000 0.00 0.00 40.11 4.85
106 107 1.449246 CTTTCTGCTCCTCGCTGGG 60.449 63.158 0.00 0.00 40.11 4.45
107 108 2.177594 CTTTCTGCTCCTCGCTGGGT 62.178 60.000 0.00 0.00 40.11 4.51
108 109 1.768684 TTTCTGCTCCTCGCTGGGTT 61.769 55.000 0.00 0.00 40.11 4.11
109 110 2.125350 CTGCTCCTCGCTGGGTTC 60.125 66.667 0.00 0.00 40.11 3.62
110 111 2.922503 TGCTCCTCGCTGGGTTCA 60.923 61.111 0.00 0.00 40.11 3.18
111 112 2.347490 GCTCCTCGCTGGGTTCAA 59.653 61.111 0.00 0.00 36.20 2.69
112 113 2.035442 GCTCCTCGCTGGGTTCAAC 61.035 63.158 0.00 0.00 36.20 3.18
113 114 1.371183 CTCCTCGCTGGGTTCAACA 59.629 57.895 0.00 0.00 36.20 3.33
114 115 0.951040 CTCCTCGCTGGGTTCAACAC 60.951 60.000 0.00 0.00 36.20 3.32
115 116 1.071471 CCTCGCTGGGTTCAACACT 59.929 57.895 0.00 0.00 0.00 3.55
116 117 0.951040 CCTCGCTGGGTTCAACACTC 60.951 60.000 0.00 0.00 0.00 3.51
117 118 0.034059 CTCGCTGGGTTCAACACTCT 59.966 55.000 0.00 0.00 0.00 3.24
118 119 0.468226 TCGCTGGGTTCAACACTCTT 59.532 50.000 0.00 0.00 0.00 2.85
119 120 1.689813 TCGCTGGGTTCAACACTCTTA 59.310 47.619 0.00 0.00 0.00 2.10
120 121 1.798813 CGCTGGGTTCAACACTCTTAC 59.201 52.381 0.00 0.00 0.00 2.34
121 122 2.548067 CGCTGGGTTCAACACTCTTACT 60.548 50.000 0.00 0.00 0.00 2.24
122 123 3.477530 GCTGGGTTCAACACTCTTACTT 58.522 45.455 0.00 0.00 0.00 2.24
123 124 4.638304 GCTGGGTTCAACACTCTTACTTA 58.362 43.478 0.00 0.00 0.00 2.24
124 125 5.246307 GCTGGGTTCAACACTCTTACTTAT 58.754 41.667 0.00 0.00 0.00 1.73
125 126 5.351740 GCTGGGTTCAACACTCTTACTTATC 59.648 44.000 0.00 0.00 0.00 1.75
126 127 5.475719 TGGGTTCAACACTCTTACTTATCG 58.524 41.667 0.00 0.00 0.00 2.92
127 128 5.244402 TGGGTTCAACACTCTTACTTATCGA 59.756 40.000 0.00 0.00 0.00 3.59
128 129 6.161381 GGGTTCAACACTCTTACTTATCGAA 58.839 40.000 0.00 0.00 0.00 3.71
129 130 6.647895 GGGTTCAACACTCTTACTTATCGAAA 59.352 38.462 0.00 0.00 0.00 3.46
130 131 7.148623 GGGTTCAACACTCTTACTTATCGAAAG 60.149 40.741 0.00 0.00 0.00 2.62
131 132 7.148623 GGTTCAACACTCTTACTTATCGAAAGG 60.149 40.741 10.65 0.00 0.00 3.11
132 133 7.223260 TCAACACTCTTACTTATCGAAAGGA 57.777 36.000 10.65 1.49 0.00 3.36
133 134 7.088905 TCAACACTCTTACTTATCGAAAGGAC 58.911 38.462 10.65 0.00 0.00 3.85
134 135 6.837471 ACACTCTTACTTATCGAAAGGACT 57.163 37.500 10.65 0.00 0.00 3.85
135 136 7.934855 ACACTCTTACTTATCGAAAGGACTA 57.065 36.000 10.65 0.00 0.00 2.59
136 137 7.760437 ACACTCTTACTTATCGAAAGGACTAC 58.240 38.462 10.65 0.00 0.00 2.73
137 138 6.906143 CACTCTTACTTATCGAAAGGACTACG 59.094 42.308 10.65 0.00 0.00 3.51
138 139 6.820656 ACTCTTACTTATCGAAAGGACTACGA 59.179 38.462 10.65 0.00 40.18 3.43
139 140 7.498570 ACTCTTACTTATCGAAAGGACTACGAT 59.501 37.037 14.84 14.84 46.07 3.73
140 141 8.893219 TCTTACTTATCGAAAGGACTACGATA 57.107 34.615 13.42 13.42 44.33 2.92
141 142 8.986847 TCTTACTTATCGAAAGGACTACGATAG 58.013 37.037 15.42 13.25 45.19 2.08
142 143 8.893219 TTACTTATCGAAAGGACTACGATAGA 57.107 34.615 15.42 9.84 45.19 1.98
143 144 7.982761 ACTTATCGAAAGGACTACGATAGAT 57.017 36.000 15.42 9.33 45.19 1.98
144 145 8.031848 ACTTATCGAAAGGACTACGATAGATC 57.968 38.462 15.42 0.00 45.19 2.75
145 146 5.883503 ATCGAAAGGACTACGATAGATCC 57.116 43.478 10.82 0.00 43.32 3.36
146 147 4.070716 TCGAAAGGACTACGATAGATCCC 58.929 47.826 0.00 0.00 41.38 3.85
147 148 3.819337 CGAAAGGACTACGATAGATCCCA 59.181 47.826 0.00 0.00 41.38 4.37
148 149 4.459685 CGAAAGGACTACGATAGATCCCAT 59.540 45.833 0.00 0.00 41.38 4.00
149 150 5.646793 CGAAAGGACTACGATAGATCCCATA 59.353 44.000 0.00 0.00 41.38 2.74
150 151 6.319152 CGAAAGGACTACGATAGATCCCATAT 59.681 42.308 0.00 0.00 41.38 1.78
151 152 7.498239 CGAAAGGACTACGATAGATCCCATATA 59.502 40.741 0.00 0.00 41.38 0.86
152 153 8.522542 AAAGGACTACGATAGATCCCATATAC 57.477 38.462 0.00 0.00 41.38 1.47
153 154 7.454553 AGGACTACGATAGATCCCATATACT 57.545 40.000 0.00 0.00 41.38 2.12
154 155 7.874252 AGGACTACGATAGATCCCATATACTT 58.126 38.462 0.00 0.00 41.38 2.24
155 156 7.776030 AGGACTACGATAGATCCCATATACTTG 59.224 40.741 0.00 0.00 41.38 3.16
156 157 7.556996 GGACTACGATAGATCCCATATACTTGT 59.443 40.741 0.00 0.00 41.38 3.16
157 158 8.282455 ACTACGATAGATCCCATATACTTGTG 57.718 38.462 0.00 0.00 41.38 3.33
158 159 6.531503 ACGATAGATCCCATATACTTGTGG 57.468 41.667 0.00 0.00 41.38 4.17
159 160 5.422331 ACGATAGATCCCATATACTTGTGGG 59.578 44.000 4.03 4.03 46.85 4.61
160 161 5.422331 CGATAGATCCCATATACTTGTGGGT 59.578 44.000 10.03 0.00 46.46 4.51
161 162 6.405953 CGATAGATCCCATATACTTGTGGGTC 60.406 46.154 10.03 7.40 46.46 4.46
162 163 8.718426 CGATAGATCCCATATACTTGTGGGTCA 61.718 44.444 10.03 0.00 46.46 4.02
165 166 4.705110 CCCATATACTTGTGGGTCATCA 57.295 45.455 2.25 0.00 46.53 3.07
166 167 4.645535 CCCATATACTTGTGGGTCATCAG 58.354 47.826 2.25 0.00 46.53 2.90
167 168 4.103153 CCCATATACTTGTGGGTCATCAGT 59.897 45.833 2.25 0.00 46.53 3.41
168 169 5.397899 CCCATATACTTGTGGGTCATCAGTT 60.398 44.000 2.25 0.00 46.53 3.16
169 170 6.183361 CCCATATACTTGTGGGTCATCAGTTA 60.183 42.308 2.25 0.00 46.53 2.24
170 171 7.279615 CCATATACTTGTGGGTCATCAGTTAA 58.720 38.462 0.00 0.00 30.76 2.01
171 172 7.226720 CCATATACTTGTGGGTCATCAGTTAAC 59.773 40.741 0.00 0.00 30.76 2.01
172 173 3.751518 ACTTGTGGGTCATCAGTTAACC 58.248 45.455 0.88 0.00 0.00 2.85
176 177 2.891191 GGGTCATCAGTTAACCCCAA 57.109 50.000 9.71 0.00 45.87 4.12
177 178 2.723273 GGGTCATCAGTTAACCCCAAG 58.277 52.381 9.71 0.00 45.87 3.61
178 179 2.041216 GGGTCATCAGTTAACCCCAAGT 59.959 50.000 9.71 0.00 45.87 3.16
179 180 3.499745 GGGTCATCAGTTAACCCCAAGTT 60.500 47.826 9.71 0.00 45.87 2.66
180 181 4.149598 GGTCATCAGTTAACCCCAAGTTT 58.850 43.478 0.88 0.00 40.05 2.66
181 182 5.318630 GGTCATCAGTTAACCCCAAGTTTA 58.681 41.667 0.88 0.00 40.05 2.01
182 183 5.949952 GGTCATCAGTTAACCCCAAGTTTAT 59.050 40.000 0.88 0.00 40.05 1.40
183 184 6.127730 GGTCATCAGTTAACCCCAAGTTTATG 60.128 42.308 0.88 0.00 40.05 1.90
184 185 5.417580 TCATCAGTTAACCCCAAGTTTATGC 59.582 40.000 0.88 0.00 40.05 3.14
185 186 4.730966 TCAGTTAACCCCAAGTTTATGCA 58.269 39.130 0.88 0.00 40.05 3.96
186 187 5.141182 TCAGTTAACCCCAAGTTTATGCAA 58.859 37.500 0.88 0.00 40.05 4.08
187 188 5.598830 TCAGTTAACCCCAAGTTTATGCAAA 59.401 36.000 0.88 0.00 40.05 3.68
188 189 6.268847 TCAGTTAACCCCAAGTTTATGCAAAT 59.731 34.615 0.88 0.00 40.05 2.32
189 190 7.451877 TCAGTTAACCCCAAGTTTATGCAAATA 59.548 33.333 0.88 0.00 40.05 1.40
190 191 7.544217 CAGTTAACCCCAAGTTTATGCAAATAC 59.456 37.037 0.88 0.00 40.05 1.89
191 192 5.414789 AACCCCAAGTTTATGCAAATACC 57.585 39.130 0.00 0.00 33.89 2.73
192 193 4.421131 ACCCCAAGTTTATGCAAATACCA 58.579 39.130 0.00 0.00 0.00 3.25
193 194 4.841246 ACCCCAAGTTTATGCAAATACCAA 59.159 37.500 0.00 0.00 0.00 3.67
194 195 5.487131 ACCCCAAGTTTATGCAAATACCAAT 59.513 36.000 0.00 0.00 0.00 3.16
195 196 5.816777 CCCCAAGTTTATGCAAATACCAATG 59.183 40.000 0.00 0.00 0.00 2.82
196 197 6.351711 CCCCAAGTTTATGCAAATACCAATGA 60.352 38.462 0.00 0.00 0.00 2.57
197 198 6.534793 CCCAAGTTTATGCAAATACCAATGAC 59.465 38.462 0.00 0.00 0.00 3.06
198 199 7.322664 CCAAGTTTATGCAAATACCAATGACT 58.677 34.615 0.00 0.00 0.00 3.41
199 200 7.818930 CCAAGTTTATGCAAATACCAATGACTT 59.181 33.333 0.00 0.00 0.00 3.01
200 201 8.649841 CAAGTTTATGCAAATACCAATGACTTG 58.350 33.333 0.00 0.00 35.00 3.16
215 216 7.136289 CAATGACTTGGAATCAAATTTTGGG 57.864 36.000 9.18 0.00 31.77 4.12
216 217 5.885449 TGACTTGGAATCAAATTTTGGGT 57.115 34.783 9.18 0.00 31.77 4.51
217 218 6.245890 TGACTTGGAATCAAATTTTGGGTT 57.754 33.333 9.18 5.11 31.77 4.11
218 219 6.657875 TGACTTGGAATCAAATTTTGGGTTT 58.342 32.000 9.18 1.81 31.77 3.27
219 220 6.541641 TGACTTGGAATCAAATTTTGGGTTTG 59.458 34.615 9.18 0.00 37.79 2.93
220 221 5.827267 ACTTGGAATCAAATTTTGGGTTTGG 59.173 36.000 9.18 0.00 37.22 3.28
221 222 5.636903 TGGAATCAAATTTTGGGTTTGGA 57.363 34.783 9.18 0.00 37.22 3.53
222 223 5.619220 TGGAATCAAATTTTGGGTTTGGAG 58.381 37.500 9.18 0.00 37.22 3.86
223 224 5.003160 GGAATCAAATTTTGGGTTTGGAGG 58.997 41.667 9.18 0.00 37.22 4.30
224 225 3.483808 TCAAATTTTGGGTTTGGAGGC 57.516 42.857 9.18 0.00 37.22 4.70
225 226 2.774234 TCAAATTTTGGGTTTGGAGGCA 59.226 40.909 9.18 0.00 37.22 4.75
226 227 3.200825 TCAAATTTTGGGTTTGGAGGCAA 59.799 39.130 9.18 0.00 37.22 4.52
227 228 2.928801 ATTTTGGGTTTGGAGGCAAC 57.071 45.000 0.00 0.00 0.00 4.17
228 229 0.833949 TTTTGGGTTTGGAGGCAACC 59.166 50.000 0.00 0.00 42.80 3.77
229 230 0.031616 TTTGGGTTTGGAGGCAACCT 60.032 50.000 4.68 0.00 43.05 3.50
230 231 0.031616 TTGGGTTTGGAGGCAACCTT 60.032 50.000 4.68 0.00 43.05 3.50
231 232 0.469144 TGGGTTTGGAGGCAACCTTC 60.469 55.000 4.68 0.00 43.05 3.46
232 233 1.524008 GGGTTTGGAGGCAACCTTCG 61.524 60.000 4.68 0.00 43.05 3.79
233 234 0.536460 GGTTTGGAGGCAACCTTCGA 60.536 55.000 0.00 0.00 40.66 3.71
234 235 0.875059 GTTTGGAGGCAACCTTCGAG 59.125 55.000 2.74 0.00 29.90 4.04
235 236 0.250727 TTTGGAGGCAACCTTCGAGG 60.251 55.000 2.74 0.03 42.49 4.63
245 246 2.067197 CCTTCGAGGTTTGAGGGGT 58.933 57.895 0.00 0.00 0.00 4.95
246 247 0.036294 CCTTCGAGGTTTGAGGGGTC 60.036 60.000 0.00 0.00 0.00 4.46
247 248 0.036294 CTTCGAGGTTTGAGGGGTCC 60.036 60.000 0.00 0.00 0.00 4.46
248 249 0.765135 TTCGAGGTTTGAGGGGTCCA 60.765 55.000 0.00 0.00 0.00 4.02
249 250 0.765135 TCGAGGTTTGAGGGGTCCAA 60.765 55.000 0.00 0.00 0.00 3.53
250 251 0.328258 CGAGGTTTGAGGGGTCCAAT 59.672 55.000 0.00 0.00 0.00 3.16
251 252 1.839424 GAGGTTTGAGGGGTCCAATG 58.161 55.000 0.00 0.00 0.00 2.82
252 253 0.251787 AGGTTTGAGGGGTCCAATGC 60.252 55.000 0.00 0.00 0.00 3.56
253 254 0.251787 GGTTTGAGGGGTCCAATGCT 60.252 55.000 0.00 0.00 0.00 3.79
254 255 0.890683 GTTTGAGGGGTCCAATGCTG 59.109 55.000 0.00 0.00 0.00 4.41
255 256 0.251742 TTTGAGGGGTCCAATGCTGG 60.252 55.000 0.00 0.00 45.08 4.85
256 257 2.440980 GAGGGGTCCAATGCTGGC 60.441 66.667 0.00 0.00 43.17 4.85
257 258 4.431131 AGGGGTCCAATGCTGGCG 62.431 66.667 0.00 0.00 43.17 5.69
264 265 3.511595 CAATGCTGGCGCGGTGAT 61.512 61.111 8.83 0.00 39.65 3.06
265 266 2.179547 CAATGCTGGCGCGGTGATA 61.180 57.895 8.83 0.00 39.65 2.15
266 267 1.889105 AATGCTGGCGCGGTGATAG 60.889 57.895 8.83 0.00 39.65 2.08
267 268 2.310327 AATGCTGGCGCGGTGATAGA 62.310 55.000 8.83 0.00 39.65 1.98
268 269 2.029666 GCTGGCGCGGTGATAGAT 59.970 61.111 8.83 0.00 0.00 1.98
269 270 1.289066 GCTGGCGCGGTGATAGATA 59.711 57.895 8.83 0.00 0.00 1.98
270 271 0.734253 GCTGGCGCGGTGATAGATAG 60.734 60.000 8.83 0.00 0.00 2.08
271 272 0.881796 CTGGCGCGGTGATAGATAGA 59.118 55.000 8.83 0.00 0.00 1.98
272 273 0.881796 TGGCGCGGTGATAGATAGAG 59.118 55.000 8.83 0.00 0.00 2.43
273 274 0.882474 GGCGCGGTGATAGATAGAGT 59.118 55.000 8.83 0.00 0.00 3.24
274 275 2.082231 GGCGCGGTGATAGATAGAGTA 58.918 52.381 8.83 0.00 0.00 2.59
275 276 2.096174 GGCGCGGTGATAGATAGAGTAG 59.904 54.545 8.83 0.00 0.00 2.57
276 277 2.743126 GCGCGGTGATAGATAGAGTAGT 59.257 50.000 8.83 0.00 0.00 2.73
277 278 3.425094 GCGCGGTGATAGATAGAGTAGTG 60.425 52.174 8.83 0.00 0.00 2.74
278 279 3.125487 CGCGGTGATAGATAGAGTAGTGG 59.875 52.174 0.00 0.00 0.00 4.00
279 280 3.440872 GCGGTGATAGATAGAGTAGTGGG 59.559 52.174 0.00 0.00 0.00 4.61
280 281 3.440872 CGGTGATAGATAGAGTAGTGGGC 59.559 52.174 0.00 0.00 0.00 5.36
281 282 4.408276 GGTGATAGATAGAGTAGTGGGCA 58.592 47.826 0.00 0.00 0.00 5.36
282 283 4.833380 GGTGATAGATAGAGTAGTGGGCAA 59.167 45.833 0.00 0.00 0.00 4.52
283 284 5.279056 GGTGATAGATAGAGTAGTGGGCAAC 60.279 48.000 0.00 0.00 0.00 4.17
284 285 5.302059 GTGATAGATAGAGTAGTGGGCAACA 59.698 44.000 0.00 0.00 39.74 3.33
285 286 6.015010 GTGATAGATAGAGTAGTGGGCAACAT 60.015 42.308 0.00 0.00 39.74 2.71
286 287 4.679373 AGATAGAGTAGTGGGCAACATG 57.321 45.455 0.00 0.00 39.74 3.21
287 288 4.033709 AGATAGAGTAGTGGGCAACATGT 58.966 43.478 0.00 0.00 39.74 3.21
288 289 5.208890 AGATAGAGTAGTGGGCAACATGTA 58.791 41.667 0.00 0.00 39.74 2.29
289 290 5.661312 AGATAGAGTAGTGGGCAACATGTAA 59.339 40.000 0.00 0.00 39.74 2.41
290 291 4.634012 AGAGTAGTGGGCAACATGTAAA 57.366 40.909 0.00 0.00 39.74 2.01
291 292 5.179452 AGAGTAGTGGGCAACATGTAAAT 57.821 39.130 0.00 0.00 39.74 1.40
292 293 6.308015 AGAGTAGTGGGCAACATGTAAATA 57.692 37.500 0.00 0.00 39.74 1.40
293 294 6.900194 AGAGTAGTGGGCAACATGTAAATAT 58.100 36.000 0.00 0.00 39.74 1.28
294 295 7.346471 AGAGTAGTGGGCAACATGTAAATATT 58.654 34.615 0.00 0.00 39.74 1.28
295 296 7.834181 AGAGTAGTGGGCAACATGTAAATATTT 59.166 33.333 5.89 5.89 39.74 1.40
296 297 7.996385 AGTAGTGGGCAACATGTAAATATTTC 58.004 34.615 3.39 0.00 39.74 2.17
297 298 5.890334 AGTGGGCAACATGTAAATATTTCG 58.110 37.500 3.39 0.00 39.74 3.46
298 299 5.650266 AGTGGGCAACATGTAAATATTTCGA 59.350 36.000 3.39 0.00 39.74 3.71
299 300 6.151985 AGTGGGCAACATGTAAATATTTCGAA 59.848 34.615 3.39 0.00 39.74 3.71
300 301 6.472163 GTGGGCAACATGTAAATATTTCGAAG 59.528 38.462 3.39 0.00 39.74 3.79
301 302 5.458779 GGGCAACATGTAAATATTTCGAAGC 59.541 40.000 3.39 1.80 39.74 3.86
302 303 6.265577 GGCAACATGTAAATATTTCGAAGCT 58.734 36.000 3.39 0.00 0.00 3.74
303 304 6.414987 GGCAACATGTAAATATTTCGAAGCTC 59.585 38.462 3.39 0.00 0.00 4.09
304 305 6.966632 GCAACATGTAAATATTTCGAAGCTCA 59.033 34.615 3.39 0.00 0.00 4.26
305 306 7.044706 GCAACATGTAAATATTTCGAAGCTCAC 60.045 37.037 3.39 0.00 0.00 3.51
306 307 7.609760 ACATGTAAATATTTCGAAGCTCACA 57.390 32.000 3.39 1.43 0.00 3.58
307 308 8.213518 ACATGTAAATATTTCGAAGCTCACAT 57.786 30.769 3.39 3.79 0.00 3.21
308 309 8.677300 ACATGTAAATATTTCGAAGCTCACATT 58.323 29.630 3.39 0.00 0.00 2.71
315 316 9.817809 AATATTTCGAAGCTCACATTAAGTAGA 57.182 29.630 0.00 0.00 0.00 2.59
316 317 6.946229 TTTCGAAGCTCACATTAAGTAGAC 57.054 37.500 0.00 0.00 0.00 2.59
317 318 5.638596 TCGAAGCTCACATTAAGTAGACA 57.361 39.130 0.00 0.00 0.00 3.41
318 319 6.208988 TCGAAGCTCACATTAAGTAGACAT 57.791 37.500 0.00 0.00 0.00 3.06
319 320 7.329588 TCGAAGCTCACATTAAGTAGACATA 57.670 36.000 0.00 0.00 0.00 2.29
320 321 7.941919 TCGAAGCTCACATTAAGTAGACATAT 58.058 34.615 0.00 0.00 0.00 1.78
321 322 8.076781 TCGAAGCTCACATTAAGTAGACATATC 58.923 37.037 0.00 0.00 0.00 1.63
322 323 7.862873 CGAAGCTCACATTAAGTAGACATATCA 59.137 37.037 0.00 0.00 0.00 2.15
323 324 9.190858 GAAGCTCACATTAAGTAGACATATCAG 57.809 37.037 0.00 0.00 0.00 2.90
324 325 8.243961 AGCTCACATTAAGTAGACATATCAGT 57.756 34.615 0.00 0.00 0.00 3.41
325 326 8.356657 AGCTCACATTAAGTAGACATATCAGTC 58.643 37.037 0.00 0.00 38.81 3.51
342 343 4.574527 CAGTCTGAACTGCTCAAATACG 57.425 45.455 0.00 0.00 46.01 3.06
343 344 4.237724 CAGTCTGAACTGCTCAAATACGA 58.762 43.478 0.00 0.00 46.01 3.43
344 345 4.325741 CAGTCTGAACTGCTCAAATACGAG 59.674 45.833 0.00 0.00 46.01 4.18
345 346 4.021894 AGTCTGAACTGCTCAAATACGAGT 60.022 41.667 0.00 0.00 35.33 4.18
346 347 5.183331 AGTCTGAACTGCTCAAATACGAGTA 59.817 40.000 0.00 0.00 35.33 2.59
347 348 8.565202 CAGTCTGAACTGCTCAAATACGAGTAG 61.565 44.444 0.00 4.74 46.01 2.57
365 366 5.347620 AGTAGTGGGCATCATTTAACGTA 57.652 39.130 0.00 0.00 0.00 3.57
542 553 6.100134 TCCTTATGGTGTCATGAGATGAATGA 59.900 38.462 0.00 0.00 38.75 2.57
567 579 2.928116 GGCCATAGTTGTAGTTGTCGAC 59.072 50.000 9.11 9.11 0.00 4.20
617 629 1.946984 TTCTTTCCCCCTCGCTTAGA 58.053 50.000 0.00 0.00 0.00 2.10
654 666 9.570468 TCTTATATGACTTTACTATCTGTCGGT 57.430 33.333 0.00 0.00 32.64 4.69
657 669 5.717078 TGACTTTACTATCTGTCGGTGTT 57.283 39.130 0.00 0.00 32.64 3.32
705 723 3.056035 CCTATTTATGTAGAGGCCGGGTC 60.056 52.174 2.18 0.00 0.00 4.46
934 989 2.394708 CTCTCTCGTCGCAGTTTCAAA 58.605 47.619 0.00 0.00 0.00 2.69
984 1040 2.770589 CCAAATTAGCCACCCCGCG 61.771 63.158 0.00 0.00 0.00 6.46
1537 1594 0.815734 ACGCGCTCTACATGGTAAGT 59.184 50.000 5.73 0.00 0.00 2.24
1546 1603 5.859114 GCTCTACATGGTAAGTCATGATACG 59.141 44.000 11.20 0.00 45.30 3.06
1547 1604 6.327279 TCTACATGGTAAGTCATGATACGG 57.673 41.667 11.20 0.00 45.30 4.02
1548 1605 4.336889 ACATGGTAAGTCATGATACGGG 57.663 45.455 11.20 0.00 45.30 5.28
1549 1606 3.709653 ACATGGTAAGTCATGATACGGGT 59.290 43.478 11.20 0.00 45.30 5.28
1550 1607 4.897076 ACATGGTAAGTCATGATACGGGTA 59.103 41.667 11.20 0.00 45.30 3.69
1551 1608 5.010719 ACATGGTAAGTCATGATACGGGTAG 59.989 44.000 11.20 0.00 45.30 3.18
1552 1609 3.319972 TGGTAAGTCATGATACGGGTAGC 59.680 47.826 0.00 0.00 0.00 3.58
1662 1726 4.161876 TGGTACAGTAAAGGTCAGGCTTA 58.838 43.478 0.00 0.00 0.00 3.09
1812 1876 7.636150 AAGTCAATAACTGGAATCCTCAATG 57.364 36.000 0.00 0.00 38.58 2.82
1835 1899 7.459795 TGTTTGCTGTTATTGATGGTGAATA 57.540 32.000 0.00 0.00 0.00 1.75
1877 1941 6.763135 TCCTTTGTGCATAGTCTGATCATTAC 59.237 38.462 0.00 0.00 0.00 1.89
1931 1995 6.361433 AGAAGAGATGCTAGCAGTAGACTAA 58.639 40.000 23.89 0.00 0.00 2.24
1983 2047 8.382875 GTTTAATGAAGCTGGAATAAATTGTGC 58.617 33.333 0.00 0.00 0.00 4.57
2021 2085 7.156876 TCTTATTTTTGCCTCGTTGATGAAT 57.843 32.000 0.00 0.00 0.00 2.57
2213 2296 3.066291 TGCACAATGGTTCTTCCGTAT 57.934 42.857 0.00 0.00 39.52 3.06
2276 2359 2.556189 TGTTTGCCAAATACGCATGAGT 59.444 40.909 7.41 7.41 35.83 3.41
2344 2427 7.386848 GTGTCAGTGTTTTAGTAAGATTGCCTA 59.613 37.037 0.00 0.00 0.00 3.93
2349 2432 5.870978 TGTTTTAGTAAGATTGCCTACGACC 59.129 40.000 0.00 0.00 0.00 4.79
2356 2439 0.537188 ATTGCCTACGACCCACTGAG 59.463 55.000 0.00 0.00 0.00 3.35
2443 2527 2.357569 CCCCTCTTTTCTTGCAGCCTAT 60.358 50.000 0.00 0.00 0.00 2.57
2449 2533 5.079643 TCTTTTCTTGCAGCCTATTTTCCT 58.920 37.500 0.00 0.00 0.00 3.36
2718 2802 3.308866 GCATTGTTCTACGCGATAAAGGT 59.691 43.478 15.93 0.00 0.00 3.50
2731 2815 4.315803 CGATAAAGGTTGTGAAGGTCTGT 58.684 43.478 0.00 0.00 0.00 3.41
3012 3096 1.144936 GAGGGACCTGGATGAAGCG 59.855 63.158 0.00 0.00 0.00 4.68
3806 3890 4.522789 CACTGGCCCAGTAAGTTATTTGTT 59.477 41.667 17.77 0.00 43.43 2.83
3850 3936 8.931385 TTGAAAAGAAAAACAGATGAAAGGAG 57.069 30.769 0.00 0.00 0.00 3.69
3858 3944 9.965824 GAAAAACAGATGAAAGGAGACAAAATA 57.034 29.630 0.00 0.00 0.00 1.40
3888 3974 7.179872 AATCTTGAGATCGGCGTTAGCAAATA 61.180 38.462 6.85 0.55 38.39 1.40
3967 4053 2.194201 TAGGTTGCACCCACTTTAGC 57.806 50.000 2.00 0.00 39.75 3.09
4134 4242 7.174946 CAGGAAAAGGAGACTGCAAAAAGTATA 59.825 37.037 0.00 0.00 42.68 1.47
4164 4272 2.069273 CTAAAACGAGCACAGTCTGGG 58.931 52.381 4.53 0.02 0.00 4.45
4218 4326 7.574217 GCGTTGTAAATTTGACCTCCAGATAAA 60.574 37.037 0.00 0.00 0.00 1.40
4273 4381 2.706555 TGCACAAGAGAGTAGTGTCG 57.293 50.000 0.00 0.00 35.75 4.35
4558 4667 1.246056 ACCTTGTGCGCATGATGCTT 61.246 50.000 15.91 0.00 42.25 3.91
4745 4864 1.152567 CTTTGTGTTGCCTCCCCCA 60.153 57.895 0.00 0.00 0.00 4.96
4746 4865 0.758685 CTTTGTGTTGCCTCCCCCAA 60.759 55.000 0.00 0.00 0.00 4.12
4755 4874 1.304464 CCTCCCCCAAAGTTGCCTC 60.304 63.158 0.00 0.00 0.00 4.70
4756 4875 1.460255 CTCCCCCAAAGTTGCCTCA 59.540 57.895 0.00 0.00 0.00 3.86
4757 4876 0.040204 CTCCCCCAAAGTTGCCTCAT 59.960 55.000 0.00 0.00 0.00 2.90
4758 4877 1.284785 CTCCCCCAAAGTTGCCTCATA 59.715 52.381 0.00 0.00 0.00 2.15
4759 4878 1.929494 TCCCCCAAAGTTGCCTCATAT 59.071 47.619 0.00 0.00 0.00 1.78
4760 4879 3.127250 TCCCCCAAAGTTGCCTCATATA 58.873 45.455 0.00 0.00 0.00 0.86
4767 4888 5.105392 CCAAAGTTGCCTCATATAAAGCCAA 60.105 40.000 0.00 0.00 0.00 4.52
4780 4901 2.592102 AAGCCAAGCATCTCTGGAAA 57.408 45.000 0.00 0.00 0.00 3.13
5033 5157 3.805823 AGTACTAATGCGTGCAAAAACG 58.194 40.909 0.00 0.00 46.30 3.60
5039 5163 0.665835 TGCGTGCAAAAACGAATCCT 59.334 45.000 0.17 0.00 46.49 3.24
5044 5168 3.453424 GTGCAAAAACGAATCCTTTGGT 58.547 40.909 0.00 0.00 31.98 3.67
5078 5202 7.948034 TTCTGTCATTTCCCGGTTTAATTAT 57.052 32.000 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 9.661563 TCACTGAAATTATCGGTAACAAATAGT 57.338 29.630 0.00 0.00 46.15 2.12
27 28 9.787532 CAATCACTGAAATTATCGGTAACAAAT 57.212 29.630 0.00 0.00 46.15 2.32
28 29 7.753132 GCAATCACTGAAATTATCGGTAACAAA 59.247 33.333 0.00 0.00 46.15 2.83
29 30 7.094592 TGCAATCACTGAAATTATCGGTAACAA 60.095 33.333 0.00 0.00 46.15 2.83
30 31 6.372937 TGCAATCACTGAAATTATCGGTAACA 59.627 34.615 0.00 0.00 46.15 2.41
31 32 6.781138 TGCAATCACTGAAATTATCGGTAAC 58.219 36.000 0.00 0.00 46.15 2.50
32 33 6.821160 TCTGCAATCACTGAAATTATCGGTAA 59.179 34.615 0.00 0.00 46.15 2.85
33 34 6.345298 TCTGCAATCACTGAAATTATCGGTA 58.655 36.000 0.00 0.00 46.15 4.02
35 36 5.525012 TCTCTGCAATCACTGAAATTATCGG 59.475 40.000 0.00 0.00 40.53 4.18
36 37 6.594284 TCTCTGCAATCACTGAAATTATCG 57.406 37.500 0.00 0.00 0.00 2.92
37 38 9.875675 GTATTCTCTGCAATCACTGAAATTATC 57.124 33.333 0.00 0.00 0.00 1.75
38 39 9.624373 AGTATTCTCTGCAATCACTGAAATTAT 57.376 29.630 0.00 0.00 0.00 1.28
39 40 9.453572 AAGTATTCTCTGCAATCACTGAAATTA 57.546 29.630 0.00 0.00 0.00 1.40
40 41 7.934855 AGTATTCTCTGCAATCACTGAAATT 57.065 32.000 0.00 0.00 0.00 1.82
41 42 7.934855 AAGTATTCTCTGCAATCACTGAAAT 57.065 32.000 0.00 0.00 0.00 2.17
42 43 7.587629 CAAAGTATTCTCTGCAATCACTGAAA 58.412 34.615 0.00 0.00 0.00 2.69
43 44 6.348786 GCAAAGTATTCTCTGCAATCACTGAA 60.349 38.462 0.00 0.00 37.56 3.02
44 45 5.122869 GCAAAGTATTCTCTGCAATCACTGA 59.877 40.000 0.00 0.00 37.56 3.41
45 46 5.123502 AGCAAAGTATTCTCTGCAATCACTG 59.876 40.000 0.23 0.00 39.83 3.66
46 47 5.123502 CAGCAAAGTATTCTCTGCAATCACT 59.876 40.000 0.23 0.00 39.83 3.41
47 48 5.122869 TCAGCAAAGTATTCTCTGCAATCAC 59.877 40.000 0.23 0.00 39.83 3.06
48 49 5.247862 TCAGCAAAGTATTCTCTGCAATCA 58.752 37.500 0.23 0.00 39.83 2.57
49 50 5.808042 TCAGCAAAGTATTCTCTGCAATC 57.192 39.130 0.23 0.00 39.83 2.67
50 51 6.579666 TTTCAGCAAAGTATTCTCTGCAAT 57.420 33.333 0.23 0.00 39.83 3.56
51 52 6.208644 GTTTTCAGCAAAGTATTCTCTGCAA 58.791 36.000 0.23 0.00 39.83 4.08
52 53 5.278463 GGTTTTCAGCAAAGTATTCTCTGCA 60.278 40.000 0.23 0.00 39.83 4.41
53 54 5.157067 GGTTTTCAGCAAAGTATTCTCTGC 58.843 41.667 0.00 0.00 37.87 4.26
54 55 5.385617 CGGTTTTCAGCAAAGTATTCTCTG 58.614 41.667 0.00 0.00 0.00 3.35
55 56 4.083271 GCGGTTTTCAGCAAAGTATTCTCT 60.083 41.667 0.00 0.00 40.56 3.10
56 57 4.083271 AGCGGTTTTCAGCAAAGTATTCTC 60.083 41.667 0.00 0.00 43.16 2.87
57 58 3.821033 AGCGGTTTTCAGCAAAGTATTCT 59.179 39.130 0.00 0.00 43.16 2.40
58 59 4.160736 AGCGGTTTTCAGCAAAGTATTC 57.839 40.909 0.00 0.00 43.16 1.75
59 60 4.202111 ACAAGCGGTTTTCAGCAAAGTATT 60.202 37.500 0.00 0.00 43.16 1.89
60 61 3.317993 ACAAGCGGTTTTCAGCAAAGTAT 59.682 39.130 0.00 0.00 43.16 2.12
61 62 2.685897 ACAAGCGGTTTTCAGCAAAGTA 59.314 40.909 0.00 0.00 43.16 2.24
62 63 1.476488 ACAAGCGGTTTTCAGCAAAGT 59.524 42.857 0.00 0.00 43.16 2.66
63 64 2.119457 GACAAGCGGTTTTCAGCAAAG 58.881 47.619 8.55 0.00 43.16 2.77
64 65 1.474478 TGACAAGCGGTTTTCAGCAAA 59.526 42.857 11.88 0.00 43.16 3.68
65 66 1.098869 TGACAAGCGGTTTTCAGCAA 58.901 45.000 11.88 0.00 43.16 3.91
66 67 1.317613 ATGACAAGCGGTTTTCAGCA 58.682 45.000 19.55 4.91 43.16 4.41
67 68 2.422276 AATGACAAGCGGTTTTCAGC 57.578 45.000 19.55 0.00 41.13 4.26
68 69 4.228912 AGAAATGACAAGCGGTTTTCAG 57.771 40.909 19.55 1.85 31.52 3.02
69 70 4.647424 AAGAAATGACAAGCGGTTTTCA 57.353 36.364 17.51 17.51 31.52 2.69
70 71 5.173854 CAGAAAGAAATGACAAGCGGTTTTC 59.826 40.000 6.56 6.56 0.00 2.29
71 72 5.043248 CAGAAAGAAATGACAAGCGGTTTT 58.957 37.500 0.00 0.00 0.00 2.43
72 73 4.610945 CAGAAAGAAATGACAAGCGGTTT 58.389 39.130 0.00 0.00 0.00 3.27
73 74 3.550842 GCAGAAAGAAATGACAAGCGGTT 60.551 43.478 0.00 0.00 0.00 4.44
74 75 2.030805 GCAGAAAGAAATGACAAGCGGT 60.031 45.455 0.00 0.00 0.00 5.68
75 76 2.227388 AGCAGAAAGAAATGACAAGCGG 59.773 45.455 0.00 0.00 0.00 5.52
76 77 3.486584 GAGCAGAAAGAAATGACAAGCG 58.513 45.455 0.00 0.00 0.00 4.68
77 78 3.505293 AGGAGCAGAAAGAAATGACAAGC 59.495 43.478 0.00 0.00 0.00 4.01
78 79 4.142945 CGAGGAGCAGAAAGAAATGACAAG 60.143 45.833 0.00 0.00 0.00 3.16
79 80 3.748048 CGAGGAGCAGAAAGAAATGACAA 59.252 43.478 0.00 0.00 0.00 3.18
80 81 3.329386 CGAGGAGCAGAAAGAAATGACA 58.671 45.455 0.00 0.00 0.00 3.58
95 96 0.951040 GTGTTGAACCCAGCGAGGAG 60.951 60.000 1.68 0.00 41.22 3.69
96 97 1.070786 GTGTTGAACCCAGCGAGGA 59.929 57.895 1.68 0.00 41.22 3.71
97 98 0.951040 GAGTGTTGAACCCAGCGAGG 60.951 60.000 0.00 0.00 37.03 4.63
98 99 0.034059 AGAGTGTTGAACCCAGCGAG 59.966 55.000 0.00 0.00 0.00 5.03
99 100 0.468226 AAGAGTGTTGAACCCAGCGA 59.532 50.000 0.00 0.00 0.00 4.93
100 101 1.798813 GTAAGAGTGTTGAACCCAGCG 59.201 52.381 0.00 0.00 0.00 5.18
101 102 3.127425 AGTAAGAGTGTTGAACCCAGC 57.873 47.619 0.00 0.00 0.00 4.85
102 103 5.577164 CGATAAGTAAGAGTGTTGAACCCAG 59.423 44.000 0.00 0.00 0.00 4.45
103 104 5.244402 TCGATAAGTAAGAGTGTTGAACCCA 59.756 40.000 0.00 0.00 0.00 4.51
104 105 5.717119 TCGATAAGTAAGAGTGTTGAACCC 58.283 41.667 0.00 0.00 0.00 4.11
105 106 7.148623 CCTTTCGATAAGTAAGAGTGTTGAACC 60.149 40.741 0.00 0.00 29.89 3.62
106 107 7.597743 TCCTTTCGATAAGTAAGAGTGTTGAAC 59.402 37.037 0.00 0.00 29.89 3.18
107 108 7.597743 GTCCTTTCGATAAGTAAGAGTGTTGAA 59.402 37.037 0.00 0.00 29.89 2.69
108 109 7.039923 AGTCCTTTCGATAAGTAAGAGTGTTGA 60.040 37.037 0.00 0.00 29.89 3.18
109 110 7.091443 AGTCCTTTCGATAAGTAAGAGTGTTG 58.909 38.462 0.00 0.00 29.89 3.33
110 111 7.229581 AGTCCTTTCGATAAGTAAGAGTGTT 57.770 36.000 0.00 0.00 29.89 3.32
111 112 6.837471 AGTCCTTTCGATAAGTAAGAGTGT 57.163 37.500 0.00 0.00 29.89 3.55
112 113 6.906143 CGTAGTCCTTTCGATAAGTAAGAGTG 59.094 42.308 0.00 0.00 29.89 3.51
113 114 6.820656 TCGTAGTCCTTTCGATAAGTAAGAGT 59.179 38.462 0.00 0.00 29.89 3.24
114 115 7.244166 TCGTAGTCCTTTCGATAAGTAAGAG 57.756 40.000 0.00 0.00 29.89 2.85
115 116 7.798596 ATCGTAGTCCTTTCGATAAGTAAGA 57.201 36.000 0.00 0.00 41.46 2.10
116 117 8.986847 TCTATCGTAGTCCTTTCGATAAGTAAG 58.013 37.037 7.65 0.00 42.90 2.34
117 118 8.893219 TCTATCGTAGTCCTTTCGATAAGTAA 57.107 34.615 7.65 0.00 42.90 2.24
118 119 9.149225 GATCTATCGTAGTCCTTTCGATAAGTA 57.851 37.037 7.65 0.00 42.90 2.24
119 120 7.119553 GGATCTATCGTAGTCCTTTCGATAAGT 59.880 40.741 7.65 1.07 42.90 2.24
120 121 7.414319 GGGATCTATCGTAGTCCTTTCGATAAG 60.414 44.444 7.65 0.00 42.90 1.73
121 122 6.373774 GGGATCTATCGTAGTCCTTTCGATAA 59.626 42.308 7.65 1.63 42.90 1.75
122 123 5.879223 GGGATCTATCGTAGTCCTTTCGATA 59.121 44.000 0.00 0.00 42.78 2.92
123 124 4.701171 GGGATCTATCGTAGTCCTTTCGAT 59.299 45.833 0.00 0.00 44.53 3.59
124 125 4.070716 GGGATCTATCGTAGTCCTTTCGA 58.929 47.826 0.00 0.00 37.96 3.71
125 126 3.819337 TGGGATCTATCGTAGTCCTTTCG 59.181 47.826 0.00 0.00 0.00 3.46
126 127 5.986501 ATGGGATCTATCGTAGTCCTTTC 57.013 43.478 0.00 0.00 0.00 2.62
127 128 8.337739 AGTATATGGGATCTATCGTAGTCCTTT 58.662 37.037 0.00 0.00 0.00 3.11
128 129 7.874252 AGTATATGGGATCTATCGTAGTCCTT 58.126 38.462 0.00 0.00 0.00 3.36
129 130 7.454553 AGTATATGGGATCTATCGTAGTCCT 57.545 40.000 0.00 0.00 0.00 3.85
130 131 7.556996 ACAAGTATATGGGATCTATCGTAGTCC 59.443 40.741 0.00 0.00 0.00 3.85
131 132 8.399425 CACAAGTATATGGGATCTATCGTAGTC 58.601 40.741 0.00 0.00 0.00 2.59
132 133 7.339721 CCACAAGTATATGGGATCTATCGTAGT 59.660 40.741 0.00 0.00 31.83 2.73
133 134 7.708051 CCACAAGTATATGGGATCTATCGTAG 58.292 42.308 0.00 0.00 31.83 3.51
134 135 7.640597 CCACAAGTATATGGGATCTATCGTA 57.359 40.000 0.00 0.00 31.83 3.43
135 136 6.531503 CCACAAGTATATGGGATCTATCGT 57.468 41.667 0.00 0.00 31.83 3.73
145 146 5.296151 ACTGATGACCCACAAGTATATGG 57.704 43.478 0.00 0.00 35.59 2.74
146 147 7.226720 GGTTAACTGATGACCCACAAGTATATG 59.773 40.741 5.42 0.00 0.00 1.78
147 148 7.280356 GGTTAACTGATGACCCACAAGTATAT 58.720 38.462 5.42 0.00 0.00 0.86
148 149 6.646267 GGTTAACTGATGACCCACAAGTATA 58.354 40.000 5.42 0.00 0.00 1.47
149 150 5.497474 GGTTAACTGATGACCCACAAGTAT 58.503 41.667 5.42 0.00 0.00 2.12
150 151 4.901868 GGTTAACTGATGACCCACAAGTA 58.098 43.478 5.42 0.00 0.00 2.24
151 152 3.751518 GGTTAACTGATGACCCACAAGT 58.248 45.455 5.42 0.00 0.00 3.16
158 159 3.434940 ACTTGGGGTTAACTGATGACC 57.565 47.619 5.42 0.00 0.00 4.02
159 160 6.625081 GCATAAACTTGGGGTTAACTGATGAC 60.625 42.308 5.42 0.00 37.12 3.06
160 161 5.417580 GCATAAACTTGGGGTTAACTGATGA 59.582 40.000 5.42 0.00 37.12 2.92
161 162 5.184864 TGCATAAACTTGGGGTTAACTGATG 59.815 40.000 5.42 0.00 37.12 3.07
162 163 5.329399 TGCATAAACTTGGGGTTAACTGAT 58.671 37.500 5.42 0.00 37.12 2.90
163 164 4.730966 TGCATAAACTTGGGGTTAACTGA 58.269 39.130 5.42 0.00 37.12 3.41
164 165 5.461032 TTGCATAAACTTGGGGTTAACTG 57.539 39.130 5.42 0.00 37.12 3.16
165 166 6.680148 ATTTGCATAAACTTGGGGTTAACT 57.320 33.333 5.42 0.00 37.12 2.24
166 167 6.814644 GGTATTTGCATAAACTTGGGGTTAAC 59.185 38.462 0.00 0.00 37.12 2.01
167 168 6.497259 TGGTATTTGCATAAACTTGGGGTTAA 59.503 34.615 0.00 0.00 37.12 2.01
168 169 6.017192 TGGTATTTGCATAAACTTGGGGTTA 58.983 36.000 0.00 0.00 37.12 2.85
169 170 4.841246 TGGTATTTGCATAAACTTGGGGTT 59.159 37.500 0.00 0.00 40.28 4.11
170 171 4.421131 TGGTATTTGCATAAACTTGGGGT 58.579 39.130 0.00 0.00 0.00 4.95
171 172 5.413309 TTGGTATTTGCATAAACTTGGGG 57.587 39.130 0.00 0.00 0.00 4.96
172 173 6.534793 GTCATTGGTATTTGCATAAACTTGGG 59.465 38.462 0.00 0.00 0.00 4.12
173 174 7.322664 AGTCATTGGTATTTGCATAAACTTGG 58.677 34.615 0.00 0.00 0.00 3.61
174 175 8.649841 CAAGTCATTGGTATTTGCATAAACTTG 58.350 33.333 0.00 0.00 32.43 3.16
175 176 8.761575 CAAGTCATTGGTATTTGCATAAACTT 57.238 30.769 0.00 0.00 32.43 2.66
191 192 6.711645 ACCCAAAATTTGATTCCAAGTCATTG 59.288 34.615 7.37 0.00 33.23 2.82
192 193 6.840527 ACCCAAAATTTGATTCCAAGTCATT 58.159 32.000 7.37 0.00 33.23 2.57
193 194 6.438186 ACCCAAAATTTGATTCCAAGTCAT 57.562 33.333 7.37 0.00 33.23 3.06
194 195 5.885449 ACCCAAAATTTGATTCCAAGTCA 57.115 34.783 7.37 0.00 33.23 3.41
195 196 6.017192 CCAAACCCAAAATTTGATTCCAAGTC 60.017 38.462 7.37 0.00 39.01 3.01
196 197 5.827267 CCAAACCCAAAATTTGATTCCAAGT 59.173 36.000 7.37 0.00 39.01 3.16
197 198 6.060788 TCCAAACCCAAAATTTGATTCCAAG 58.939 36.000 7.37 0.00 39.01 3.61
198 199 6.006275 TCCAAACCCAAAATTTGATTCCAA 57.994 33.333 7.37 0.00 39.01 3.53
199 200 5.455899 CCTCCAAACCCAAAATTTGATTCCA 60.456 40.000 7.37 0.00 39.01 3.53
200 201 5.003160 CCTCCAAACCCAAAATTTGATTCC 58.997 41.667 7.37 0.00 39.01 3.01
201 202 4.455533 GCCTCCAAACCCAAAATTTGATTC 59.544 41.667 7.37 0.00 39.01 2.52
202 203 4.141298 TGCCTCCAAACCCAAAATTTGATT 60.141 37.500 7.37 0.00 39.01 2.57
203 204 3.393941 TGCCTCCAAACCCAAAATTTGAT 59.606 39.130 7.37 0.00 39.01 2.57
204 205 2.774234 TGCCTCCAAACCCAAAATTTGA 59.226 40.909 7.37 0.00 39.01 2.69
205 206 3.205784 TGCCTCCAAACCCAAAATTTG 57.794 42.857 0.00 0.00 36.90 2.32
206 207 3.550820 GTTGCCTCCAAACCCAAAATTT 58.449 40.909 0.00 0.00 31.68 1.82
207 208 2.158682 GGTTGCCTCCAAACCCAAAATT 60.159 45.455 0.00 0.00 32.39 1.82
208 209 1.419762 GGTTGCCTCCAAACCCAAAAT 59.580 47.619 0.00 0.00 32.39 1.82
209 210 0.833949 GGTTGCCTCCAAACCCAAAA 59.166 50.000 0.00 0.00 32.39 2.44
210 211 0.031616 AGGTTGCCTCCAAACCCAAA 60.032 50.000 1.78 0.00 39.53 3.28
211 212 0.031616 AAGGTTGCCTCCAAACCCAA 60.032 50.000 1.78 0.00 39.53 4.12
212 213 0.469144 GAAGGTTGCCTCCAAACCCA 60.469 55.000 1.78 0.00 39.53 4.51
213 214 1.524008 CGAAGGTTGCCTCCAAACCC 61.524 60.000 1.78 0.00 39.53 4.11
214 215 0.536460 TCGAAGGTTGCCTCCAAACC 60.536 55.000 0.00 0.00 39.53 3.27
215 216 0.875059 CTCGAAGGTTGCCTCCAAAC 59.125 55.000 0.00 0.00 38.98 2.93
216 217 0.250727 CCTCGAAGGTTGCCTCCAAA 60.251 55.000 0.00 0.00 30.89 3.28
217 218 1.374947 CCTCGAAGGTTGCCTCCAA 59.625 57.895 0.00 0.00 30.89 3.53
218 219 3.068881 CCTCGAAGGTTGCCTCCA 58.931 61.111 0.00 0.00 30.89 3.86
227 228 0.036294 GACCCCTCAAACCTCGAAGG 60.036 60.000 0.00 0.00 42.49 3.46
228 229 0.036294 GGACCCCTCAAACCTCGAAG 60.036 60.000 0.00 0.00 0.00 3.79
229 230 0.765135 TGGACCCCTCAAACCTCGAA 60.765 55.000 0.00 0.00 0.00 3.71
230 231 0.765135 TTGGACCCCTCAAACCTCGA 60.765 55.000 0.00 0.00 0.00 4.04
231 232 0.328258 ATTGGACCCCTCAAACCTCG 59.672 55.000 0.00 0.00 0.00 4.63
232 233 1.839424 CATTGGACCCCTCAAACCTC 58.161 55.000 0.00 0.00 0.00 3.85
233 234 0.251787 GCATTGGACCCCTCAAACCT 60.252 55.000 0.00 0.00 0.00 3.50
234 235 0.251787 AGCATTGGACCCCTCAAACC 60.252 55.000 0.00 0.00 0.00 3.27
235 236 0.890683 CAGCATTGGACCCCTCAAAC 59.109 55.000 0.00 0.00 0.00 2.93
236 237 3.362040 CAGCATTGGACCCCTCAAA 57.638 52.632 0.00 0.00 0.00 2.69
247 248 2.109538 CTATCACCGCGCCAGCATTG 62.110 60.000 0.00 0.00 45.49 2.82
248 249 1.889105 CTATCACCGCGCCAGCATT 60.889 57.895 0.00 0.00 45.49 3.56
249 250 2.104572 ATCTATCACCGCGCCAGCAT 62.105 55.000 0.00 0.00 45.49 3.79
250 251 1.460273 TATCTATCACCGCGCCAGCA 61.460 55.000 0.00 0.00 45.49 4.41
251 252 0.734253 CTATCTATCACCGCGCCAGC 60.734 60.000 0.00 0.00 40.74 4.85
252 253 0.881796 TCTATCTATCACCGCGCCAG 59.118 55.000 0.00 0.00 0.00 4.85
253 254 0.881796 CTCTATCTATCACCGCGCCA 59.118 55.000 0.00 0.00 0.00 5.69
254 255 0.882474 ACTCTATCTATCACCGCGCC 59.118 55.000 0.00 0.00 0.00 6.53
255 256 2.743126 ACTACTCTATCTATCACCGCGC 59.257 50.000 0.00 0.00 0.00 6.86
256 257 3.125487 CCACTACTCTATCTATCACCGCG 59.875 52.174 0.00 0.00 0.00 6.46
257 258 3.440872 CCCACTACTCTATCTATCACCGC 59.559 52.174 0.00 0.00 0.00 5.68
258 259 3.440872 GCCCACTACTCTATCTATCACCG 59.559 52.174 0.00 0.00 0.00 4.94
259 260 4.408276 TGCCCACTACTCTATCTATCACC 58.592 47.826 0.00 0.00 0.00 4.02
260 261 5.302059 TGTTGCCCACTACTCTATCTATCAC 59.698 44.000 0.00 0.00 0.00 3.06
261 262 5.454966 TGTTGCCCACTACTCTATCTATCA 58.545 41.667 0.00 0.00 0.00 2.15
262 263 6.015010 ACATGTTGCCCACTACTCTATCTATC 60.015 42.308 0.00 0.00 0.00 2.08
263 264 5.841237 ACATGTTGCCCACTACTCTATCTAT 59.159 40.000 0.00 0.00 0.00 1.98
264 265 5.208890 ACATGTTGCCCACTACTCTATCTA 58.791 41.667 0.00 0.00 0.00 1.98
265 266 4.033709 ACATGTTGCCCACTACTCTATCT 58.966 43.478 0.00 0.00 0.00 1.98
266 267 4.408182 ACATGTTGCCCACTACTCTATC 57.592 45.455 0.00 0.00 0.00 2.08
267 268 5.950544 TTACATGTTGCCCACTACTCTAT 57.049 39.130 2.30 0.00 0.00 1.98
268 269 5.748670 TTTACATGTTGCCCACTACTCTA 57.251 39.130 2.30 0.00 0.00 2.43
269 270 4.634012 TTTACATGTTGCCCACTACTCT 57.366 40.909 2.30 0.00 0.00 3.24
270 271 7.568199 AATATTTACATGTTGCCCACTACTC 57.432 36.000 2.30 0.00 0.00 2.59
271 272 7.201696 CGAAATATTTACATGTTGCCCACTACT 60.202 37.037 2.30 0.00 0.00 2.57
272 273 6.910433 CGAAATATTTACATGTTGCCCACTAC 59.090 38.462 2.30 0.00 0.00 2.73
273 274 6.824196 TCGAAATATTTACATGTTGCCCACTA 59.176 34.615 2.30 0.00 0.00 2.74
274 275 5.650266 TCGAAATATTTACATGTTGCCCACT 59.350 36.000 2.30 0.00 0.00 4.00
275 276 5.885881 TCGAAATATTTACATGTTGCCCAC 58.114 37.500 2.30 0.00 0.00 4.61
276 277 6.516739 TTCGAAATATTTACATGTTGCCCA 57.483 33.333 2.30 0.00 0.00 5.36
277 278 5.458779 GCTTCGAAATATTTACATGTTGCCC 59.541 40.000 2.30 0.00 0.00 5.36
278 279 6.265577 AGCTTCGAAATATTTACATGTTGCC 58.734 36.000 2.30 0.00 0.00 4.52
279 280 6.966632 TGAGCTTCGAAATATTTACATGTTGC 59.033 34.615 2.30 0.67 0.00 4.17
280 281 7.962373 TGTGAGCTTCGAAATATTTACATGTTG 59.038 33.333 2.30 0.00 0.00 3.33
281 282 8.039603 TGTGAGCTTCGAAATATTTACATGTT 57.960 30.769 2.30 0.00 0.00 2.71
282 283 7.609760 TGTGAGCTTCGAAATATTTACATGT 57.390 32.000 2.69 2.69 0.00 3.21
289 290 9.817809 TCTACTTAATGTGAGCTTCGAAATATT 57.182 29.630 0.00 0.00 0.00 1.28
290 291 9.250624 GTCTACTTAATGTGAGCTTCGAAATAT 57.749 33.333 0.00 0.00 0.00 1.28
291 292 8.248253 TGTCTACTTAATGTGAGCTTCGAAATA 58.752 33.333 0.00 0.00 0.00 1.40
292 293 7.097192 TGTCTACTTAATGTGAGCTTCGAAAT 58.903 34.615 0.00 0.00 0.00 2.17
293 294 6.452242 TGTCTACTTAATGTGAGCTTCGAAA 58.548 36.000 0.00 0.00 0.00 3.46
294 295 6.020971 TGTCTACTTAATGTGAGCTTCGAA 57.979 37.500 0.00 0.00 0.00 3.71
295 296 5.638596 TGTCTACTTAATGTGAGCTTCGA 57.361 39.130 0.00 0.00 0.00 3.71
296 297 7.862873 TGATATGTCTACTTAATGTGAGCTTCG 59.137 37.037 0.00 0.00 0.00 3.79
297 298 9.190858 CTGATATGTCTACTTAATGTGAGCTTC 57.809 37.037 0.00 0.00 0.00 3.86
298 299 8.700051 ACTGATATGTCTACTTAATGTGAGCTT 58.300 33.333 0.00 0.00 0.00 3.74
299 300 8.243961 ACTGATATGTCTACTTAATGTGAGCT 57.756 34.615 0.00 0.00 0.00 4.09
300 301 8.356657 AGACTGATATGTCTACTTAATGTGAGC 58.643 37.037 0.00 0.00 44.53 4.26
301 302 9.676195 CAGACTGATATGTCTACTTAATGTGAG 57.324 37.037 0.00 0.00 44.56 3.51
302 303 9.408648 TCAGACTGATATGTCTACTTAATGTGA 57.591 33.333 0.00 0.00 44.56 3.58
322 323 4.021894 ACTCGTATTTGAGCAGTTCAGACT 60.022 41.667 0.00 0.00 39.68 3.24
323 324 4.238514 ACTCGTATTTGAGCAGTTCAGAC 58.761 43.478 0.00 0.00 39.68 3.51
324 325 4.521130 ACTCGTATTTGAGCAGTTCAGA 57.479 40.909 0.00 0.00 39.68 3.27
325 326 5.287274 CACTACTCGTATTTGAGCAGTTCAG 59.713 44.000 0.00 0.00 39.08 3.02
326 327 5.161358 CACTACTCGTATTTGAGCAGTTCA 58.839 41.667 0.00 0.00 39.08 3.18
327 328 4.563184 CCACTACTCGTATTTGAGCAGTTC 59.437 45.833 0.00 0.00 39.08 3.01
328 329 4.495422 CCACTACTCGTATTTGAGCAGTT 58.505 43.478 0.00 0.00 39.08 3.16
329 330 3.119101 CCCACTACTCGTATTTGAGCAGT 60.119 47.826 0.00 0.00 42.09 4.40
330 331 3.448686 CCCACTACTCGTATTTGAGCAG 58.551 50.000 0.00 0.00 39.68 4.24
331 332 2.418197 GCCCACTACTCGTATTTGAGCA 60.418 50.000 0.00 0.00 39.68 4.26
332 333 2.202566 GCCCACTACTCGTATTTGAGC 58.797 52.381 0.00 0.00 39.68 4.26
333 334 3.520290 TGCCCACTACTCGTATTTGAG 57.480 47.619 0.00 0.00 41.86 3.02
334 335 3.449377 TGATGCCCACTACTCGTATTTGA 59.551 43.478 0.00 0.00 0.00 2.69
335 336 3.792401 TGATGCCCACTACTCGTATTTG 58.208 45.455 0.00 0.00 0.00 2.32
336 337 4.689612 ATGATGCCCACTACTCGTATTT 57.310 40.909 0.00 0.00 0.00 1.40
337 338 4.689612 AATGATGCCCACTACTCGTATT 57.310 40.909 0.00 0.00 0.00 1.89
338 339 4.689612 AAATGATGCCCACTACTCGTAT 57.310 40.909 0.00 0.00 0.00 3.06
339 340 5.353938 GTTAAATGATGCCCACTACTCGTA 58.646 41.667 0.00 0.00 0.00 3.43
340 341 4.189231 GTTAAATGATGCCCACTACTCGT 58.811 43.478 0.00 0.00 0.00 4.18
341 342 3.245284 CGTTAAATGATGCCCACTACTCG 59.755 47.826 0.00 0.00 0.00 4.18
342 343 4.189231 ACGTTAAATGATGCCCACTACTC 58.811 43.478 0.00 0.00 0.00 2.59
343 344 4.216411 ACGTTAAATGATGCCCACTACT 57.784 40.909 0.00 0.00 0.00 2.57
344 345 5.114081 ACTACGTTAAATGATGCCCACTAC 58.886 41.667 0.00 0.00 0.00 2.73
345 346 5.347620 ACTACGTTAAATGATGCCCACTA 57.652 39.130 0.00 0.00 0.00 2.74
346 347 4.216411 ACTACGTTAAATGATGCCCACT 57.784 40.909 0.00 0.00 0.00 4.00
347 348 4.957759 AACTACGTTAAATGATGCCCAC 57.042 40.909 0.00 0.00 0.00 4.61
348 349 6.092944 CACTAAACTACGTTAAATGATGCCCA 59.907 38.462 0.00 0.00 0.00 5.36
349 350 6.314400 TCACTAAACTACGTTAAATGATGCCC 59.686 38.462 0.00 0.00 0.00 5.36
365 366 8.732746 ACATCGGCTTTATTAATCACTAAACT 57.267 30.769 0.00 0.00 0.00 2.66
542 553 4.261801 GACAACTACAACTATGGCCACAT 58.738 43.478 8.16 0.00 41.13 3.21
595 607 4.040584 GTCTAAGCGAGGGGGAAAGAATAT 59.959 45.833 0.00 0.00 0.00 1.28
667 679 3.735237 ATAGGATAGCCAACACTGACG 57.265 47.619 0.00 0.00 36.29 4.35
671 683 8.492415 TCTACATAAATAGGATAGCCAACACT 57.508 34.615 0.00 0.00 36.29 3.55
784 839 7.683704 GCATGTCAGATCATCTTTAGCCATTTT 60.684 37.037 0.00 0.00 0.00 1.82
934 989 1.268743 GCAGTGAGAGCGCAAACTTTT 60.269 47.619 11.47 0.00 0.00 2.27
1546 1603 3.538634 AGAATAAACAGGACGCTACCC 57.461 47.619 0.00 0.00 0.00 3.69
1547 1604 4.032558 CGAAAGAATAAACAGGACGCTACC 59.967 45.833 0.00 0.00 0.00 3.18
1548 1605 4.860907 TCGAAAGAATAAACAGGACGCTAC 59.139 41.667 0.00 0.00 37.03 3.58
1549 1606 5.063180 TCGAAAGAATAAACAGGACGCTA 57.937 39.130 0.00 0.00 37.03 4.26
1550 1607 3.921677 TCGAAAGAATAAACAGGACGCT 58.078 40.909 0.00 0.00 37.03 5.07
1551 1608 3.483738 GCTCGAAAGAATAAACAGGACGC 60.484 47.826 0.00 0.00 41.32 5.19
1552 1609 3.241678 CGCTCGAAAGAATAAACAGGACG 60.242 47.826 0.00 0.00 41.32 4.79
1593 1657 2.038269 ACACGCCCTACCGCAAATG 61.038 57.895 0.00 0.00 0.00 2.32
1599 1663 3.876589 AACAGCACACGCCCTACCG 62.877 63.158 0.00 0.00 39.83 4.02
1662 1726 8.463930 TCAATTGGAAACTCAGAACAATAACT 57.536 30.769 5.42 0.00 32.03 2.24
1812 1876 8.931385 AATATTCACCATCAATAACAGCAAAC 57.069 30.769 0.00 0.00 0.00 2.93
1835 1899 1.145738 AGGACCACAGAGCACCAAAAT 59.854 47.619 0.00 0.00 0.00 1.82
1931 1995 4.887071 TGACAAAACAACTGAAGCACCTAT 59.113 37.500 0.00 0.00 0.00 2.57
1983 2047 2.990066 ATAAGAAACCAGAGGCTCCG 57.010 50.000 11.71 0.00 0.00 4.63
2021 2085 3.327464 TGTCTGGTCATCCAATCTGAACA 59.673 43.478 0.00 0.00 43.81 3.18
2191 2255 3.066291 ACGGAAGAACCATTGTGCATA 57.934 42.857 0.00 0.00 38.90 3.14
2213 2296 5.012239 ACATAAGCAATTTCTGAGCTTCCA 58.988 37.500 5.30 0.00 44.67 3.53
2255 2338 2.556189 ACTCATGCGTATTTGGCAAACA 59.444 40.909 16.00 9.12 44.66 2.83
2276 2359 8.149647 AGCACATTTCTCATTACAATTTGGAAA 58.850 29.630 0.00 0.00 0.00 3.13
2344 2427 1.056660 ATGGAAACTCAGTGGGTCGT 58.943 50.000 0.00 0.00 0.00 4.34
2349 2432 4.321230 GCCAAAAGTATGGAAACTCAGTGG 60.321 45.833 0.00 0.00 43.54 4.00
2356 2439 4.953579 TCCATAGGCCAAAAGTATGGAAAC 59.046 41.667 22.30 0.00 46.01 2.78
2443 2527 6.959639 ATAGACAGTTTCTGCAAAGGAAAA 57.040 33.333 1.55 0.00 35.55 2.29
2509 2593 6.587226 GCAGAGCAAATAACAATGTTCATCAA 59.413 34.615 0.22 0.00 30.19 2.57
2544 2628 1.202582 TCCTCTTTTCGCTTCTCTCCG 59.797 52.381 0.00 0.00 0.00 4.63
2731 2815 6.948886 ACAGATTCTACCAGAACTGTTCTAGA 59.051 38.462 21.65 17.62 40.36 2.43
3012 3096 6.207417 TGAGGAGTTCTTCAAAAATCATGTCC 59.793 38.462 0.00 0.00 0.00 4.02
3806 3890 4.397420 TCAATTAGGCTGAAGCAAAGTGA 58.603 39.130 12.73 12.73 44.36 3.41
3850 3936 8.119226 CCGATCTCAAGATTTCACTATTTTGTC 58.881 37.037 0.00 0.00 34.37 3.18
3858 3944 2.093973 ACGCCGATCTCAAGATTTCACT 60.094 45.455 0.00 0.00 34.37 3.41
3888 3974 7.117812 CACACTAACATGATCCTTCGTTAACTT 59.882 37.037 0.00 0.00 0.00 2.66
4049 4142 4.846779 TCAATAGGAAAACACAGCAACC 57.153 40.909 0.00 0.00 0.00 3.77
4050 4143 6.583806 CAGAATCAATAGGAAAACACAGCAAC 59.416 38.462 0.00 0.00 0.00 4.17
4095 4203 5.708948 TCCTTTTCCTGCAAATATTGAACG 58.291 37.500 0.00 0.00 0.00 3.95
4134 4242 3.439129 GTGCTCGTTTTAGCCCTTGTAAT 59.561 43.478 0.00 0.00 42.05 1.89
4218 4326 3.165071 CCAAGTTCCCCAAGCAAATAGT 58.835 45.455 0.00 0.00 0.00 2.12
4273 4381 8.164058 AGATGGAGATAAATAAAGAAGCAAGC 57.836 34.615 0.00 0.00 0.00 4.01
4369 4478 0.923358 TGGAGTGGGGTGAACAACTT 59.077 50.000 0.00 0.00 0.00 2.66
4488 4597 0.461961 GAGGCTGCAGACGATAACCT 59.538 55.000 20.43 12.49 0.00 3.50
4558 4667 2.350134 CTCCAGCAGCTGAAGGCA 59.650 61.111 24.90 7.27 44.79 4.75
4755 4874 5.311265 TCCAGAGATGCTTGGCTTTATATG 58.689 41.667 0.00 0.00 0.00 1.78
4756 4875 5.573380 TCCAGAGATGCTTGGCTTTATAT 57.427 39.130 0.00 0.00 0.00 0.86
4757 4876 5.372343 TTCCAGAGATGCTTGGCTTTATA 57.628 39.130 0.00 0.00 0.00 0.98
4758 4877 3.939740 TCCAGAGATGCTTGGCTTTAT 57.060 42.857 0.00 0.00 0.00 1.40
4759 4878 3.719268 TTCCAGAGATGCTTGGCTTTA 57.281 42.857 0.00 0.00 0.00 1.85
4760 4879 2.592102 TTCCAGAGATGCTTGGCTTT 57.408 45.000 0.00 0.00 0.00 3.51
4767 4888 3.151912 AGCAAGTTTTCCAGAGATGCT 57.848 42.857 0.00 0.00 37.80 3.79
4780 4901 2.554032 CGGAATCCAGACAAAGCAAGTT 59.446 45.455 0.00 0.00 0.00 2.66
5039 5163 4.206375 TGACAGAATCTTTGCAGACCAAA 58.794 39.130 0.00 0.00 40.97 3.28
5044 5168 4.460382 GGGAAATGACAGAATCTTTGCAGA 59.540 41.667 0.00 0.00 0.00 4.26
5078 5202 2.826428 GAGCGCCACTCAGATGATAAA 58.174 47.619 2.29 0.00 45.49 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.