Multiple sequence alignment - TraesCS6D01G232200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G232200 chr6D 100.000 3350 0 0 1 3350 325772676 325776025 0 6187
1 TraesCS6D01G232200 chr6A 92.731 3013 125 35 364 3350 464619176 464622120 0 4265
2 TraesCS6D01G232200 chr6B 93.489 2104 112 17 549 2648 497021356 497019274 0 3103


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G232200 chr6D 325772676 325776025 3349 False 6187 6187 100.000 1 3350 1 chr6D.!!$F1 3349
1 TraesCS6D01G232200 chr6A 464619176 464622120 2944 False 4265 4265 92.731 364 3350 1 chr6A.!!$F1 2986
2 TraesCS6D01G232200 chr6B 497019274 497021356 2082 True 3103 3103 93.489 549 2648 1 chr6B.!!$R1 2099

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
116 117 0.026674 CATCGCGCCATTGTGTAGTG 59.973 55.0 0.00 0.00 0.00 2.74 F
120 121 0.109781 GCGCCATTGTGTAGTGGTTG 60.110 55.0 0.00 0.00 37.81 3.77 F
696 712 0.178955 TCTCCTACAACACCGTCCCA 60.179 55.0 0.00 0.00 0.00 4.37 F
991 1007 0.308376 GCTAGCGAACGGTAGGAGAG 59.692 60.0 26.46 10.86 43.90 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1743 1763 0.237235 CAGTATGGCGTGCGTGTTTT 59.763 50.000 0.00 0.0 0.00 2.43 R
1774 1794 4.375117 CGTAACTCGCAATCTCATACGTAC 59.625 45.833 0.00 0.0 32.39 3.67 R
2319 2339 0.170561 TAAGCCTGAGCGACTCGAAC 59.829 55.000 1.63 0.0 46.67 3.95 R
2804 2837 0.904649 TCGATCAGGTGCCAAGTCAT 59.095 50.000 0.00 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.896744 AGCGTAGTATTGTAATAGTACTTGACA 58.103 33.333 19.58 0.05 42.00 3.58
32 33 9.507280 GCGTAGTATTGTAATAGTACTTGACAA 57.493 33.333 19.58 15.24 42.00 3.18
40 41 8.896320 TGTAATAGTACTTGACAATTGTGTGT 57.104 30.769 17.58 13.40 38.41 3.72
41 42 8.769891 TGTAATAGTACTTGACAATTGTGTGTG 58.230 33.333 17.58 5.92 38.41 3.82
42 43 7.801716 AATAGTACTTGACAATTGTGTGTGT 57.198 32.000 17.58 11.36 38.41 3.72
43 44 5.734855 AGTACTTGACAATTGTGTGTGTC 57.265 39.130 17.58 0.26 43.66 3.67
44 45 4.574828 AGTACTTGACAATTGTGTGTGTCC 59.425 41.667 17.58 0.00 42.89 4.02
45 46 3.351740 ACTTGACAATTGTGTGTGTCCA 58.648 40.909 17.58 2.56 42.89 4.02
46 47 3.953612 ACTTGACAATTGTGTGTGTCCAT 59.046 39.130 17.58 0.00 42.89 3.41
47 48 4.402155 ACTTGACAATTGTGTGTGTCCATT 59.598 37.500 17.58 0.00 42.89 3.16
48 49 4.998671 TGACAATTGTGTGTGTCCATTT 57.001 36.364 17.58 0.00 42.89 2.32
49 50 4.680702 TGACAATTGTGTGTGTCCATTTG 58.319 39.130 17.58 0.00 42.89 2.32
50 51 4.400567 TGACAATTGTGTGTGTCCATTTGA 59.599 37.500 17.58 0.00 42.89 2.69
51 52 5.105595 TGACAATTGTGTGTGTCCATTTGAA 60.106 36.000 17.58 0.00 42.89 2.69
52 53 5.916318 ACAATTGTGTGTGTCCATTTGAAT 58.084 33.333 11.07 0.00 36.31 2.57
53 54 7.048629 ACAATTGTGTGTGTCCATTTGAATA 57.951 32.000 11.07 0.00 36.31 1.75
54 55 7.495901 ACAATTGTGTGTGTCCATTTGAATAA 58.504 30.769 11.07 0.00 36.31 1.40
55 56 7.652909 ACAATTGTGTGTGTCCATTTGAATAAG 59.347 33.333 11.07 0.00 36.31 1.73
56 57 6.707440 TTGTGTGTGTCCATTTGAATAAGT 57.293 33.333 0.00 0.00 0.00 2.24
57 58 6.070897 TGTGTGTGTCCATTTGAATAAGTG 57.929 37.500 0.00 0.00 0.00 3.16
58 59 5.592282 TGTGTGTGTCCATTTGAATAAGTGT 59.408 36.000 0.00 0.00 0.00 3.55
59 60 5.914635 GTGTGTGTCCATTTGAATAAGTGTG 59.085 40.000 0.00 0.00 0.00 3.82
60 61 5.592282 TGTGTGTCCATTTGAATAAGTGTGT 59.408 36.000 0.00 0.00 0.00 3.72
61 62 5.914635 GTGTGTCCATTTGAATAAGTGTGTG 59.085 40.000 0.00 0.00 0.00 3.82
62 63 5.009510 TGTGTCCATTTGAATAAGTGTGTGG 59.990 40.000 0.00 0.00 0.00 4.17
63 64 5.009610 GTGTCCATTTGAATAAGTGTGTGGT 59.990 40.000 0.00 0.00 0.00 4.16
64 65 6.205853 GTGTCCATTTGAATAAGTGTGTGGTA 59.794 38.462 0.00 0.00 0.00 3.25
65 66 6.429692 TGTCCATTTGAATAAGTGTGTGGTAG 59.570 38.462 0.00 0.00 0.00 3.18
66 67 6.430000 GTCCATTTGAATAAGTGTGTGGTAGT 59.570 38.462 0.00 0.00 0.00 2.73
67 68 7.604927 GTCCATTTGAATAAGTGTGTGGTAGTA 59.395 37.037 0.00 0.00 0.00 1.82
68 69 7.822334 TCCATTTGAATAAGTGTGTGGTAGTAG 59.178 37.037 0.00 0.00 0.00 2.57
69 70 7.822334 CCATTTGAATAAGTGTGTGGTAGTAGA 59.178 37.037 0.00 0.00 0.00 2.59
70 71 9.214957 CATTTGAATAAGTGTGTGGTAGTAGAA 57.785 33.333 0.00 0.00 0.00 2.10
71 72 8.827177 TTTGAATAAGTGTGTGGTAGTAGAAG 57.173 34.615 0.00 0.00 0.00 2.85
72 73 7.534723 TGAATAAGTGTGTGGTAGTAGAAGT 57.465 36.000 0.00 0.00 0.00 3.01
73 74 7.959175 TGAATAAGTGTGTGGTAGTAGAAGTT 58.041 34.615 0.00 0.00 0.00 2.66
74 75 7.870954 TGAATAAGTGTGTGGTAGTAGAAGTTG 59.129 37.037 0.00 0.00 0.00 3.16
75 76 4.602340 AGTGTGTGGTAGTAGAAGTTGG 57.398 45.455 0.00 0.00 0.00 3.77
76 77 3.323979 AGTGTGTGGTAGTAGAAGTTGGG 59.676 47.826 0.00 0.00 0.00 4.12
77 78 2.038033 TGTGTGGTAGTAGAAGTTGGGC 59.962 50.000 0.00 0.00 0.00 5.36
78 79 2.302157 GTGTGGTAGTAGAAGTTGGGCT 59.698 50.000 0.00 0.00 0.00 5.19
79 80 2.565834 TGTGGTAGTAGAAGTTGGGCTC 59.434 50.000 0.00 0.00 0.00 4.70
80 81 2.565834 GTGGTAGTAGAAGTTGGGCTCA 59.434 50.000 0.00 0.00 0.00 4.26
81 82 2.565834 TGGTAGTAGAAGTTGGGCTCAC 59.434 50.000 0.00 0.00 0.00 3.51
82 83 2.565834 GGTAGTAGAAGTTGGGCTCACA 59.434 50.000 0.00 0.00 0.00 3.58
83 84 3.197983 GGTAGTAGAAGTTGGGCTCACAT 59.802 47.826 0.00 0.00 0.00 3.21
84 85 3.340814 AGTAGAAGTTGGGCTCACATG 57.659 47.619 0.00 0.00 0.00 3.21
85 86 2.026822 AGTAGAAGTTGGGCTCACATGG 60.027 50.000 0.00 0.00 0.00 3.66
86 87 0.610232 AGAAGTTGGGCTCACATGGC 60.610 55.000 0.00 0.00 0.00 4.40
87 88 0.895100 GAAGTTGGGCTCACATGGCA 60.895 55.000 0.00 0.00 0.00 4.92
88 89 0.469705 AAGTTGGGCTCACATGGCAA 60.470 50.000 0.00 0.00 0.00 4.52
89 90 1.181098 AGTTGGGCTCACATGGCAAC 61.181 55.000 0.00 0.00 0.00 4.17
90 91 1.153524 TTGGGCTCACATGGCAACT 59.846 52.632 0.00 0.00 37.61 3.16
91 92 0.469705 TTGGGCTCACATGGCAACTT 60.470 50.000 0.00 0.00 37.61 2.66
92 93 0.469705 TGGGCTCACATGGCAACTTT 60.470 50.000 0.00 0.00 37.61 2.66
93 94 0.244721 GGGCTCACATGGCAACTTTC 59.755 55.000 0.00 0.00 37.61 2.62
94 95 0.109597 GGCTCACATGGCAACTTTCG 60.110 55.000 0.00 0.00 37.61 3.46
95 96 0.730494 GCTCACATGGCAACTTTCGC 60.730 55.000 0.00 0.00 37.61 4.70
96 97 0.877071 CTCACATGGCAACTTTCGCT 59.123 50.000 0.00 0.00 37.61 4.93
97 98 0.874390 TCACATGGCAACTTTCGCTC 59.126 50.000 0.00 0.00 37.61 5.03
98 99 0.592637 CACATGGCAACTTTCGCTCA 59.407 50.000 0.00 0.00 37.61 4.26
99 100 1.200716 CACATGGCAACTTTCGCTCAT 59.799 47.619 0.00 0.00 37.61 2.90
100 101 1.470098 ACATGGCAACTTTCGCTCATC 59.530 47.619 0.00 0.00 37.61 2.92
101 102 0.729116 ATGGCAACTTTCGCTCATCG 59.271 50.000 0.00 0.00 37.14 3.84
102 103 1.226128 GGCAACTTTCGCTCATCGC 60.226 57.895 0.00 0.00 38.27 4.58
111 112 2.023741 GCTCATCGCGCCATTGTG 59.976 61.111 0.00 0.00 0.00 3.33
112 113 2.753966 GCTCATCGCGCCATTGTGT 61.754 57.895 0.00 0.00 0.00 3.72
113 114 1.428370 GCTCATCGCGCCATTGTGTA 61.428 55.000 0.00 0.00 0.00 2.90
114 115 0.578683 CTCATCGCGCCATTGTGTAG 59.421 55.000 0.00 0.00 0.00 2.74
115 116 0.108377 TCATCGCGCCATTGTGTAGT 60.108 50.000 0.00 0.00 0.00 2.73
116 117 0.026674 CATCGCGCCATTGTGTAGTG 59.973 55.000 0.00 0.00 0.00 2.74
117 118 1.089481 ATCGCGCCATTGTGTAGTGG 61.089 55.000 0.00 0.00 38.55 4.00
118 119 2.032634 CGCGCCATTGTGTAGTGGT 61.033 57.895 0.00 0.00 37.81 4.16
119 120 1.573829 CGCGCCATTGTGTAGTGGTT 61.574 55.000 0.00 0.00 37.81 3.67
120 121 0.109781 GCGCCATTGTGTAGTGGTTG 60.110 55.000 0.00 0.00 37.81 3.77
121 122 0.521291 CGCCATTGTGTAGTGGTTGG 59.479 55.000 0.00 0.00 37.81 3.77
122 123 0.887933 GCCATTGTGTAGTGGTTGGG 59.112 55.000 0.00 0.00 37.81 4.12
123 124 0.887933 CCATTGTGTAGTGGTTGGGC 59.112 55.000 0.00 0.00 0.00 5.36
124 125 1.547675 CCATTGTGTAGTGGTTGGGCT 60.548 52.381 0.00 0.00 0.00 5.19
125 126 2.290641 CCATTGTGTAGTGGTTGGGCTA 60.291 50.000 0.00 0.00 0.00 3.93
126 127 2.554370 TTGTGTAGTGGTTGGGCTAC 57.446 50.000 0.00 0.00 38.35 3.58
127 128 1.425694 TGTGTAGTGGTTGGGCTACA 58.574 50.000 0.00 0.00 43.42 2.74
128 129 1.769465 TGTGTAGTGGTTGGGCTACAA 59.231 47.619 6.06 0.00 45.94 2.41
129 130 2.172930 TGTGTAGTGGTTGGGCTACAAA 59.827 45.455 6.06 0.00 45.94 2.83
130 131 2.812011 GTGTAGTGGTTGGGCTACAAAG 59.188 50.000 6.06 0.00 45.94 2.77
131 132 4.910200 GTGTAGTGGTTGGGCTACAAAGC 61.910 52.174 6.06 0.00 45.94 3.51
147 148 7.687005 CTACAAAGCAAACATAAAACGGAAA 57.313 32.000 0.00 0.00 0.00 3.13
148 149 6.339194 ACAAAGCAAACATAAAACGGAAAC 57.661 33.333 0.00 0.00 0.00 2.78
149 150 5.869888 ACAAAGCAAACATAAAACGGAAACA 59.130 32.000 0.00 0.00 0.00 2.83
150 151 6.536941 ACAAAGCAAACATAAAACGGAAACAT 59.463 30.769 0.00 0.00 0.00 2.71
151 152 7.707035 ACAAAGCAAACATAAAACGGAAACATA 59.293 29.630 0.00 0.00 0.00 2.29
152 153 8.707839 CAAAGCAAACATAAAACGGAAACATAT 58.292 29.630 0.00 0.00 0.00 1.78
153 154 8.825667 AAGCAAACATAAAACGGAAACATATT 57.174 26.923 0.00 0.00 0.00 1.28
154 155 8.460831 AGCAAACATAAAACGGAAACATATTC 57.539 30.769 0.00 0.00 0.00 1.75
155 156 7.272515 AGCAAACATAAAACGGAAACATATTCG 59.727 33.333 0.00 0.00 0.00 3.34
156 157 7.380320 CAAACATAAAACGGAAACATATTCGC 58.620 34.615 0.00 0.00 0.00 4.70
157 158 5.260140 ACATAAAACGGAAACATATTCGCG 58.740 37.500 0.00 0.00 0.00 5.87
158 159 2.817538 AAACGGAAACATATTCGCGG 57.182 45.000 6.13 0.00 0.00 6.46
159 160 2.012937 AACGGAAACATATTCGCGGA 57.987 45.000 6.13 0.00 0.00 5.54
160 161 2.012937 ACGGAAACATATTCGCGGAA 57.987 45.000 6.13 0.00 0.00 4.30
161 162 2.348660 ACGGAAACATATTCGCGGAAA 58.651 42.857 6.13 0.00 0.00 3.13
162 163 2.094734 ACGGAAACATATTCGCGGAAAC 59.905 45.455 6.13 0.00 0.00 2.78
182 183 5.479716 AACGAGAAGTTTCATTTTCGTGT 57.520 34.783 5.91 0.00 40.88 4.49
183 184 5.079397 ACGAGAAGTTTCATTTTCGTGTC 57.921 39.130 4.52 0.00 39.49 3.67
184 185 4.809426 ACGAGAAGTTTCATTTTCGTGTCT 59.191 37.500 4.52 0.00 39.49 3.41
185 186 5.133264 CGAGAAGTTTCATTTTCGTGTCTG 58.867 41.667 0.00 0.00 0.00 3.51
186 187 5.276868 CGAGAAGTTTCATTTTCGTGTCTGT 60.277 40.000 0.00 0.00 0.00 3.41
187 188 6.436843 AGAAGTTTCATTTTCGTGTCTGTT 57.563 33.333 0.00 0.00 0.00 3.16
188 189 6.852664 AGAAGTTTCATTTTCGTGTCTGTTT 58.147 32.000 0.00 0.00 0.00 2.83
189 190 6.967199 AGAAGTTTCATTTTCGTGTCTGTTTC 59.033 34.615 0.00 0.00 0.00 2.78
190 191 6.189677 AGTTTCATTTTCGTGTCTGTTTCA 57.810 33.333 0.00 0.00 0.00 2.69
191 192 6.795399 AGTTTCATTTTCGTGTCTGTTTCAT 58.205 32.000 0.00 0.00 0.00 2.57
192 193 6.912591 AGTTTCATTTTCGTGTCTGTTTCATC 59.087 34.615 0.00 0.00 0.00 2.92
193 194 5.356882 TCATTTTCGTGTCTGTTTCATCC 57.643 39.130 0.00 0.00 0.00 3.51
194 195 3.870723 TTTTCGTGTCTGTTTCATCCG 57.129 42.857 0.00 0.00 0.00 4.18
195 196 2.804697 TTCGTGTCTGTTTCATCCGA 57.195 45.000 0.00 0.00 0.00 4.55
196 197 2.804697 TCGTGTCTGTTTCATCCGAA 57.195 45.000 0.00 0.00 0.00 4.30
197 198 3.100658 TCGTGTCTGTTTCATCCGAAA 57.899 42.857 0.00 0.00 38.83 3.46
198 199 3.459145 TCGTGTCTGTTTCATCCGAAAA 58.541 40.909 0.00 0.00 42.66 2.29
199 200 4.062293 TCGTGTCTGTTTCATCCGAAAAT 58.938 39.130 0.00 0.00 42.66 1.82
200 201 5.231702 TCGTGTCTGTTTCATCCGAAAATA 58.768 37.500 0.00 0.00 42.66 1.40
201 202 5.119588 TCGTGTCTGTTTCATCCGAAAATAC 59.880 40.000 0.00 0.00 42.66 1.89
202 203 5.628134 GTGTCTGTTTCATCCGAAAATACC 58.372 41.667 0.00 0.00 42.66 2.73
203 204 4.390603 TGTCTGTTTCATCCGAAAATACCG 59.609 41.667 0.00 0.00 42.66 4.02
204 205 4.390909 GTCTGTTTCATCCGAAAATACCGT 59.609 41.667 0.00 0.00 42.66 4.83
205 206 4.998672 TCTGTTTCATCCGAAAATACCGTT 59.001 37.500 0.00 0.00 42.66 4.44
206 207 5.121142 TCTGTTTCATCCGAAAATACCGTTC 59.879 40.000 0.00 0.00 42.66 3.95
207 208 4.154556 TGTTTCATCCGAAAATACCGTTCC 59.845 41.667 0.00 0.00 42.66 3.62
208 209 3.613494 TCATCCGAAAATACCGTTCCA 57.387 42.857 0.00 0.00 0.00 3.53
209 210 4.145365 TCATCCGAAAATACCGTTCCAT 57.855 40.909 0.00 0.00 0.00 3.41
210 211 4.519213 TCATCCGAAAATACCGTTCCATT 58.481 39.130 0.00 0.00 0.00 3.16
211 212 4.944930 TCATCCGAAAATACCGTTCCATTT 59.055 37.500 0.00 0.00 0.00 2.32
212 213 5.416326 TCATCCGAAAATACCGTTCCATTTT 59.584 36.000 0.00 0.00 37.12 1.82
213 214 5.708877 TCCGAAAATACCGTTCCATTTTT 57.291 34.783 0.00 0.00 35.14 1.94
257 258 9.949174 AAAGTTCAATTTACATTTCCATTTTGC 57.051 25.926 0.00 0.00 0.00 3.68
258 259 8.674263 AGTTCAATTTACATTTCCATTTTGCA 57.326 26.923 0.00 0.00 0.00 4.08
259 260 9.118300 AGTTCAATTTACATTTCCATTTTGCAA 57.882 25.926 0.00 0.00 0.00 4.08
260 261 9.727627 GTTCAATTTACATTTCCATTTTGCAAA 57.272 25.926 8.05 8.05 0.00 3.68
264 265 9.911138 AATTTACATTTCCATTTTGCAAATTCC 57.089 25.926 13.65 0.00 25.85 3.01
265 266 8.688747 TTTACATTTCCATTTTGCAAATTCCT 57.311 26.923 13.65 0.00 0.00 3.36
266 267 8.688747 TTACATTTCCATTTTGCAAATTCCTT 57.311 26.923 13.65 0.00 0.00 3.36
267 268 7.585579 ACATTTCCATTTTGCAAATTCCTTT 57.414 28.000 13.65 0.00 0.00 3.11
268 269 8.009622 ACATTTCCATTTTGCAAATTCCTTTT 57.990 26.923 13.65 0.00 0.00 2.27
269 270 8.476447 ACATTTCCATTTTGCAAATTCCTTTTT 58.524 25.926 13.65 0.00 0.00 1.94
328 329 4.373771 GGAAAGTTTCCGCTCCGT 57.626 55.556 18.70 0.00 40.59 4.69
329 330 2.625375 GGAAAGTTTCCGCTCCGTT 58.375 52.632 18.70 0.00 40.59 4.44
330 331 0.949397 GGAAAGTTTCCGCTCCGTTT 59.051 50.000 18.70 0.00 40.59 3.60
331 332 1.069432 GGAAAGTTTCCGCTCCGTTTC 60.069 52.381 18.70 0.00 40.59 2.78
332 333 0.584876 AAAGTTTCCGCTCCGTTTCG 59.415 50.000 0.00 0.00 0.00 3.46
348 349 4.446719 CCGTTTCGGTCCTATATTTACTGC 59.553 45.833 0.00 0.00 42.73 4.40
349 350 5.045215 CGTTTCGGTCCTATATTTACTGCA 58.955 41.667 0.00 0.00 0.00 4.41
350 351 5.694910 CGTTTCGGTCCTATATTTACTGCAT 59.305 40.000 0.00 0.00 0.00 3.96
351 352 6.864685 CGTTTCGGTCCTATATTTACTGCATA 59.135 38.462 0.00 0.00 0.00 3.14
352 353 7.383029 CGTTTCGGTCCTATATTTACTGCATAA 59.617 37.037 0.00 0.00 0.00 1.90
353 354 9.048446 GTTTCGGTCCTATATTTACTGCATAAA 57.952 33.333 0.00 0.00 37.18 1.40
354 355 8.827177 TTCGGTCCTATATTTACTGCATAAAG 57.173 34.615 0.00 0.00 36.20 1.85
355 356 8.185506 TCGGTCCTATATTTACTGCATAAAGA 57.814 34.615 0.00 0.00 36.20 2.52
356 357 8.812972 TCGGTCCTATATTTACTGCATAAAGAT 58.187 33.333 11.08 11.08 38.12 2.40
357 358 9.088512 CGGTCCTATATTTACTGCATAAAGATC 57.911 37.037 10.16 0.00 36.38 2.75
358 359 9.944376 GGTCCTATATTTACTGCATAAAGATCA 57.056 33.333 10.16 1.94 36.38 2.92
370 371 9.618890 ACTGCATAAAGATCATACTGTATTGTT 57.381 29.630 0.00 0.00 0.00 2.83
379 380 9.035607 AGATCATACTGTATTGTTTTCGCTTAG 57.964 33.333 0.00 0.00 0.00 2.18
380 381 8.718102 ATCATACTGTATTGTTTTCGCTTAGT 57.282 30.769 0.00 0.00 0.00 2.24
381 382 7.959733 TCATACTGTATTGTTTTCGCTTAGTG 58.040 34.615 0.00 0.00 0.00 2.74
382 383 7.815549 TCATACTGTATTGTTTTCGCTTAGTGA 59.184 33.333 0.00 0.00 0.00 3.41
384 385 7.061752 ACTGTATTGTTTTCGCTTAGTGATC 57.938 36.000 0.00 0.00 0.00 2.92
385 386 6.089920 TGTATTGTTTTCGCTTAGTGATCG 57.910 37.500 0.00 0.00 0.00 3.69
386 387 3.449322 TTGTTTTCGCTTAGTGATCGC 57.551 42.857 0.00 0.00 0.00 4.58
387 388 2.409012 TGTTTTCGCTTAGTGATCGCA 58.591 42.857 9.33 0.00 0.00 5.10
394 395 1.828832 CTTAGTGATCGCAGACGTCC 58.171 55.000 13.01 0.00 42.51 4.79
401 402 0.320771 ATCGCAGACGTCCTTTTGCT 60.321 50.000 20.85 5.05 42.51 3.91
404 405 0.796927 GCAGACGTCCTTTTGCTACC 59.203 55.000 17.47 0.00 33.88 3.18
410 411 6.046593 CAGACGTCCTTTTGCTACCATAATA 58.953 40.000 13.01 0.00 0.00 0.98
418 419 6.348213 CCTTTTGCTACCATAATATACGTGGC 60.348 42.308 0.00 2.45 36.47 5.01
419 420 3.840468 TGCTACCATAATATACGTGGCG 58.160 45.455 0.00 0.00 35.68 5.69
485 486 4.754667 GGAGCCCGTCCCACGTTC 62.755 72.222 0.00 0.00 40.58 3.95
512 513 0.179067 TGTCCGTTTGCTCCGACTTT 60.179 50.000 0.00 0.00 0.00 2.66
516 517 2.232941 TCCGTTTGCTCCGACTTTAGAT 59.767 45.455 0.00 0.00 0.00 1.98
518 519 4.082081 TCCGTTTGCTCCGACTTTAGATTA 60.082 41.667 0.00 0.00 0.00 1.75
591 595 2.912956 AGGAAAGAATGTAGGACTGGCA 59.087 45.455 0.00 0.00 0.00 4.92
614 618 2.379972 CTCACGATTCCTAGGTGTCCT 58.620 52.381 9.08 0.00 37.71 3.85
644 650 6.392354 TCGTTCAACTTTTATACTCCACGAT 58.608 36.000 0.00 0.00 0.00 3.73
654 660 2.839486 ACTCCACGATGCAAGAGAAA 57.161 45.000 0.00 0.00 0.00 2.52
691 707 0.389948 GCCTGTCTCCTACAACACCG 60.390 60.000 0.00 0.00 37.74 4.94
692 708 0.966920 CCTGTCTCCTACAACACCGT 59.033 55.000 0.00 0.00 37.74 4.83
693 709 1.067776 CCTGTCTCCTACAACACCGTC 60.068 57.143 0.00 0.00 37.74 4.79
694 710 0.963962 TGTCTCCTACAACACCGTCC 59.036 55.000 0.00 0.00 34.29 4.79
695 711 0.245813 GTCTCCTACAACACCGTCCC 59.754 60.000 0.00 0.00 0.00 4.46
696 712 0.178955 TCTCCTACAACACCGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
697 713 0.902531 CTCCTACAACACCGTCCCAT 59.097 55.000 0.00 0.00 0.00 4.00
698 714 0.899720 TCCTACAACACCGTCCCATC 59.100 55.000 0.00 0.00 0.00 3.51
699 715 0.902531 CCTACAACACCGTCCCATCT 59.097 55.000 0.00 0.00 0.00 2.90
700 716 1.134788 CCTACAACACCGTCCCATCTC 60.135 57.143 0.00 0.00 0.00 2.75
863 879 2.042831 CCCAAGCAGCCTCTTTCCG 61.043 63.158 0.00 0.00 0.00 4.30
991 1007 0.308376 GCTAGCGAACGGTAGGAGAG 59.692 60.000 26.46 10.86 43.90 3.20
992 1008 1.950828 CTAGCGAACGGTAGGAGAGA 58.049 55.000 20.73 0.00 41.10 3.10
1057 1073 2.104859 CACCTGCTGCTCATGGACG 61.105 63.158 0.00 0.00 0.00 4.79
1284 1300 4.466828 CCAAAAAGCGTGTAAGATCACAG 58.533 43.478 0.00 0.00 38.12 3.66
1312 1328 1.404717 CCAAGTGCTCTGCTCACGTAT 60.405 52.381 0.00 0.00 39.31 3.06
1330 1350 3.612860 CGTATTGTCCAGTAGAGTTGTGC 59.387 47.826 0.00 0.00 0.00 4.57
1347 1367 3.577667 TGTGCAAAATAAGCTGACATGC 58.422 40.909 0.00 0.00 0.00 4.06
1743 1763 2.031012 CCGCTGCAACAGGTGAGA 59.969 61.111 0.00 0.00 31.21 3.27
1757 1777 1.815840 TGAGAAAACACGCACGCCA 60.816 52.632 0.00 0.00 0.00 5.69
1768 1788 0.458543 CGCACGCCATACTGTCTCTT 60.459 55.000 0.00 0.00 0.00 2.85
1769 1789 1.202256 CGCACGCCATACTGTCTCTTA 60.202 52.381 0.00 0.00 0.00 2.10
1770 1790 2.194271 GCACGCCATACTGTCTCTTAC 58.806 52.381 0.00 0.00 0.00 2.34
1771 1791 2.416836 GCACGCCATACTGTCTCTTACA 60.417 50.000 0.00 0.00 36.42 2.41
1772 1792 3.738281 GCACGCCATACTGTCTCTTACAT 60.738 47.826 0.00 0.00 37.50 2.29
1773 1793 4.499188 GCACGCCATACTGTCTCTTACATA 60.499 45.833 0.00 0.00 37.50 2.29
1774 1794 5.215903 CACGCCATACTGTCTCTTACATAG 58.784 45.833 0.00 0.00 37.50 2.23
1775 1795 4.888239 ACGCCATACTGTCTCTTACATAGT 59.112 41.667 0.00 0.00 37.50 2.12
1789 1809 8.504815 TCTCTTACATAGTACGTATGAGATTGC 58.495 37.037 14.54 0.00 41.50 3.56
1790 1810 7.295930 TCTTACATAGTACGTATGAGATTGCG 58.704 38.462 15.10 0.00 41.17 4.85
1791 1811 5.684550 ACATAGTACGTATGAGATTGCGA 57.315 39.130 15.10 0.00 41.17 5.10
2166 2186 3.381983 ATGCCGGACTCTGCGACA 61.382 61.111 5.05 0.00 30.86 4.35
2359 2380 1.403972 CGCGTCGTAAGTCTGAAGGC 61.404 60.000 0.00 0.00 39.48 4.35
2370 2395 3.604582 AGTCTGAAGGCTGTTTCTATGC 58.395 45.455 0.00 0.00 0.00 3.14
2466 2491 5.106555 CGTGGAAGAATAAAATGTGCAGACT 60.107 40.000 0.00 0.00 0.00 3.24
2522 2554 5.408356 ACAATAATCGGTACATAGATCGCC 58.592 41.667 0.00 0.00 0.00 5.54
2526 2558 0.386858 CGGTACATAGATCGCCGTGG 60.387 60.000 0.00 0.00 37.87 4.94
2559 2591 3.689161 TGTTAACAGTACCATGCAGATGC 59.311 43.478 3.59 0.00 42.50 3.91
2582 2614 4.930963 TGATGTACAAAAAGTTGCTGTGG 58.069 39.130 0.00 0.00 38.39 4.17
2669 2702 6.903883 TTTGTAAGACTTATCCTTGCGATC 57.096 37.500 0.00 0.00 31.92 3.69
2718 2751 1.408702 GATCTCCAAAGCTCTCTCGCT 59.591 52.381 0.00 0.00 43.31 4.93
2730 2763 1.618343 TCTCTCGCTCCATTGTGAACA 59.382 47.619 0.00 0.00 0.00 3.18
2761 2794 6.433716 TCAATCATCCACATTAGCTTGTTCAA 59.566 34.615 0.00 0.00 0.00 2.69
2766 2799 4.832266 TCCACATTAGCTTGTTCAACCAAT 59.168 37.500 0.00 0.00 0.00 3.16
2767 2800 5.304101 TCCACATTAGCTTGTTCAACCAATT 59.696 36.000 0.00 0.00 0.00 2.32
2768 2801 5.990996 CCACATTAGCTTGTTCAACCAATTT 59.009 36.000 0.00 0.00 0.00 1.82
2797 2830 1.004918 CTCCTTTCTTGCCGTCCGT 60.005 57.895 0.00 0.00 0.00 4.69
2804 2837 4.893601 TTGCCGTCCGTCGCACAA 62.894 61.111 0.00 0.00 38.35 3.33
2821 2854 2.163010 CACAATGACTTGGCACCTGATC 59.837 50.000 0.00 0.00 36.64 2.92
2856 2892 8.488764 GTTTAGAGTGTCTAACAAAGTGACATC 58.511 37.037 0.00 0.00 38.56 3.06
2857 2893 6.161855 AGAGTGTCTAACAAAGTGACATCA 57.838 37.500 0.00 0.00 41.78 3.07
2890 2926 4.740205 GTCAGAATTCTAATGATCGCGTCA 59.260 41.667 7.86 10.02 42.06 4.35
2932 2971 0.466007 TGATTCATGCCCACGGATGG 60.466 55.000 0.00 0.00 46.81 3.51
2953 2992 1.407618 CATGGATCTTGGTGCACATGG 59.592 52.381 20.43 7.49 33.84 3.66
2954 2993 0.405198 TGGATCTTGGTGCACATGGT 59.595 50.000 20.43 3.63 0.00 3.55
3051 3090 3.491581 ACGAAGTTGTCTGCGGTAG 57.508 52.632 0.00 0.00 46.20 3.18
3070 3109 1.843206 AGGGGGCAAACACACAAAAAT 59.157 42.857 0.00 0.00 0.00 1.82
3074 3113 4.824537 GGGGGCAAACACACAAAAATTTAT 59.175 37.500 0.00 0.00 0.00 1.40
3109 3148 1.141645 CACACATGTGCCATTTGTGC 58.858 50.000 25.68 0.00 43.51 4.57
3117 3156 1.065600 GCCATTTGTGCGTGTGTGT 59.934 52.632 0.00 0.00 0.00 3.72
3119 3158 0.100325 CCATTTGTGCGTGTGTGTGT 59.900 50.000 0.00 0.00 0.00 3.72
3124 3163 4.102815 TGCGTGTGTGTGTGGGGT 62.103 61.111 0.00 0.00 0.00 4.95
3128 3167 3.814906 TGTGTGTGTGGGGTGGGG 61.815 66.667 0.00 0.00 0.00 4.96
3129 3168 4.596585 GTGTGTGTGGGGTGGGGG 62.597 72.222 0.00 0.00 0.00 5.40
3174 3213 2.231478 CTCCACCGTTGAGTATGAGTGT 59.769 50.000 0.00 0.00 0.00 3.55
3175 3214 2.029380 TCCACCGTTGAGTATGAGTGTG 60.029 50.000 0.00 0.00 0.00 3.82
3197 3236 6.262273 TGTGAGTAACTGGAATTTTTCTCACC 59.738 38.462 17.57 7.07 45.29 4.02
3234 3273 8.319057 AGTCCTATGGTGTTTGATGTAGATTA 57.681 34.615 0.00 0.00 0.00 1.75
3243 3282 7.744715 GGTGTTTGATGTAGATTAAACAACGAG 59.255 37.037 20.08 0.00 44.89 4.18
3263 3302 1.869767 GATTCATCCTCCACGATGCAC 59.130 52.381 0.00 0.00 39.64 4.57
3318 3357 0.948623 CGTTGATGTGGTCTTGCGGA 60.949 55.000 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.896744 TGTCAAGTACTATTACAATACTACGCT 58.103 33.333 0.00 0.00 0.00 5.07
6 7 9.507280 TTGTCAAGTACTATTACAATACTACGC 57.493 33.333 11.51 0.00 0.00 4.42
14 15 9.332502 ACACACAATTGTCAAGTACTATTACAA 57.667 29.630 8.48 15.75 32.69 2.41
15 16 8.769891 CACACACAATTGTCAAGTACTATTACA 58.230 33.333 8.48 0.00 32.69 2.41
16 17 8.770828 ACACACACAATTGTCAAGTACTATTAC 58.229 33.333 8.48 0.00 32.69 1.89
17 18 8.896320 ACACACACAATTGTCAAGTACTATTA 57.104 30.769 8.48 0.00 32.69 0.98
18 19 7.041372 GGACACACACAATTGTCAAGTACTATT 60.041 37.037 8.48 0.00 43.40 1.73
19 20 6.426937 GGACACACACAATTGTCAAGTACTAT 59.573 38.462 8.48 0.00 43.40 2.12
20 21 5.756347 GGACACACACAATTGTCAAGTACTA 59.244 40.000 8.48 0.00 43.40 1.82
21 22 4.574828 GGACACACACAATTGTCAAGTACT 59.425 41.667 8.48 0.00 43.40 2.73
22 23 4.334203 TGGACACACACAATTGTCAAGTAC 59.666 41.667 8.48 6.68 43.40 2.73
23 24 4.518249 TGGACACACACAATTGTCAAGTA 58.482 39.130 8.48 0.00 43.40 2.24
24 25 3.351740 TGGACACACACAATTGTCAAGT 58.648 40.909 8.48 5.19 43.40 3.16
25 26 4.572985 ATGGACACACACAATTGTCAAG 57.427 40.909 8.48 4.04 43.40 3.02
26 27 4.998671 AATGGACACACACAATTGTCAA 57.001 36.364 8.48 0.00 43.40 3.18
27 28 4.400567 TCAAATGGACACACACAATTGTCA 59.599 37.500 8.48 2.03 43.40 3.58
28 29 4.930963 TCAAATGGACACACACAATTGTC 58.069 39.130 8.48 0.00 41.28 3.18
29 30 4.998671 TCAAATGGACACACACAATTGT 57.001 36.364 4.92 4.92 35.84 2.71
30 31 7.652909 ACTTATTCAAATGGACACACACAATTG 59.347 33.333 3.24 3.24 0.00 2.32
31 32 7.652909 CACTTATTCAAATGGACACACACAATT 59.347 33.333 0.00 0.00 0.00 2.32
32 33 7.147312 CACTTATTCAAATGGACACACACAAT 58.853 34.615 0.00 0.00 0.00 2.71
33 34 6.096141 ACACTTATTCAAATGGACACACACAA 59.904 34.615 0.00 0.00 0.00 3.33
34 35 5.592282 ACACTTATTCAAATGGACACACACA 59.408 36.000 0.00 0.00 0.00 3.72
35 36 5.914635 CACACTTATTCAAATGGACACACAC 59.085 40.000 0.00 0.00 0.00 3.82
36 37 5.592282 ACACACTTATTCAAATGGACACACA 59.408 36.000 0.00 0.00 0.00 3.72
37 38 5.914635 CACACACTTATTCAAATGGACACAC 59.085 40.000 0.00 0.00 0.00 3.82
38 39 5.009510 CCACACACTTATTCAAATGGACACA 59.990 40.000 0.00 0.00 0.00 3.72
39 40 5.009610 ACCACACACTTATTCAAATGGACAC 59.990 40.000 0.00 0.00 0.00 3.67
40 41 5.136828 ACCACACACTTATTCAAATGGACA 58.863 37.500 0.00 0.00 0.00 4.02
41 42 5.705609 ACCACACACTTATTCAAATGGAC 57.294 39.130 0.00 0.00 0.00 4.02
42 43 6.539173 ACTACCACACACTTATTCAAATGGA 58.461 36.000 0.00 0.00 0.00 3.41
43 44 6.817765 ACTACCACACACTTATTCAAATGG 57.182 37.500 0.00 0.00 0.00 3.16
44 45 8.771920 TCTACTACCACACACTTATTCAAATG 57.228 34.615 0.00 0.00 0.00 2.32
45 46 9.436957 CTTCTACTACCACACACTTATTCAAAT 57.563 33.333 0.00 0.00 0.00 2.32
46 47 8.426489 ACTTCTACTACCACACACTTATTCAAA 58.574 33.333 0.00 0.00 0.00 2.69
47 48 7.959175 ACTTCTACTACCACACACTTATTCAA 58.041 34.615 0.00 0.00 0.00 2.69
48 49 7.534723 ACTTCTACTACCACACACTTATTCA 57.465 36.000 0.00 0.00 0.00 2.57
49 50 7.331193 CCAACTTCTACTACCACACACTTATTC 59.669 40.741 0.00 0.00 0.00 1.75
50 51 7.159372 CCAACTTCTACTACCACACACTTATT 58.841 38.462 0.00 0.00 0.00 1.40
51 52 6.295688 CCCAACTTCTACTACCACACACTTAT 60.296 42.308 0.00 0.00 0.00 1.73
52 53 5.011329 CCCAACTTCTACTACCACACACTTA 59.989 44.000 0.00 0.00 0.00 2.24
53 54 4.202326 CCCAACTTCTACTACCACACACTT 60.202 45.833 0.00 0.00 0.00 3.16
54 55 3.323979 CCCAACTTCTACTACCACACACT 59.676 47.826 0.00 0.00 0.00 3.55
55 56 3.660865 CCCAACTTCTACTACCACACAC 58.339 50.000 0.00 0.00 0.00 3.82
56 57 2.038033 GCCCAACTTCTACTACCACACA 59.962 50.000 0.00 0.00 0.00 3.72
57 58 2.302157 AGCCCAACTTCTACTACCACAC 59.698 50.000 0.00 0.00 0.00 3.82
58 59 2.565834 GAGCCCAACTTCTACTACCACA 59.434 50.000 0.00 0.00 0.00 4.17
59 60 2.565834 TGAGCCCAACTTCTACTACCAC 59.434 50.000 0.00 0.00 0.00 4.16
60 61 2.565834 GTGAGCCCAACTTCTACTACCA 59.434 50.000 0.00 0.00 0.00 3.25
61 62 2.565834 TGTGAGCCCAACTTCTACTACC 59.434 50.000 0.00 0.00 0.00 3.18
62 63 3.955650 TGTGAGCCCAACTTCTACTAC 57.044 47.619 0.00 0.00 0.00 2.73
63 64 3.197766 CCATGTGAGCCCAACTTCTACTA 59.802 47.826 0.00 0.00 0.00 1.82
64 65 2.026822 CCATGTGAGCCCAACTTCTACT 60.027 50.000 0.00 0.00 0.00 2.57
65 66 2.359900 CCATGTGAGCCCAACTTCTAC 58.640 52.381 0.00 0.00 0.00 2.59
66 67 1.340017 GCCATGTGAGCCCAACTTCTA 60.340 52.381 0.00 0.00 0.00 2.10
67 68 0.610232 GCCATGTGAGCCCAACTTCT 60.610 55.000 0.00 0.00 0.00 2.85
68 69 0.895100 TGCCATGTGAGCCCAACTTC 60.895 55.000 0.00 0.00 0.00 3.01
69 70 0.469705 TTGCCATGTGAGCCCAACTT 60.470 50.000 0.00 0.00 0.00 2.66
70 71 1.153524 TTGCCATGTGAGCCCAACT 59.846 52.632 0.00 0.00 0.00 3.16
71 72 1.181098 AGTTGCCATGTGAGCCCAAC 61.181 55.000 0.00 0.00 36.83 3.77
72 73 0.469705 AAGTTGCCATGTGAGCCCAA 60.470 50.000 0.00 0.00 0.00 4.12
73 74 0.469705 AAAGTTGCCATGTGAGCCCA 60.470 50.000 0.00 0.00 0.00 5.36
74 75 0.244721 GAAAGTTGCCATGTGAGCCC 59.755 55.000 0.00 0.00 0.00 5.19
75 76 0.109597 CGAAAGTTGCCATGTGAGCC 60.110 55.000 0.00 0.00 0.00 4.70
76 77 0.730494 GCGAAAGTTGCCATGTGAGC 60.730 55.000 0.00 0.00 0.00 4.26
77 78 0.877071 AGCGAAAGTTGCCATGTGAG 59.123 50.000 0.00 0.00 0.00 3.51
78 79 0.874390 GAGCGAAAGTTGCCATGTGA 59.126 50.000 0.00 0.00 0.00 3.58
79 80 0.592637 TGAGCGAAAGTTGCCATGTG 59.407 50.000 0.00 0.00 0.00 3.21
80 81 1.470098 GATGAGCGAAAGTTGCCATGT 59.530 47.619 0.00 0.00 0.00 3.21
81 82 1.530441 CGATGAGCGAAAGTTGCCATG 60.530 52.381 0.00 0.00 44.57 3.66
82 83 0.729116 CGATGAGCGAAAGTTGCCAT 59.271 50.000 0.00 0.00 44.57 4.40
83 84 1.911293 GCGATGAGCGAAAGTTGCCA 61.911 55.000 0.00 0.00 44.57 4.92
84 85 1.226128 GCGATGAGCGAAAGTTGCC 60.226 57.895 0.00 0.00 44.57 4.52
85 86 4.349791 GCGATGAGCGAAAGTTGC 57.650 55.556 0.00 0.00 44.57 4.17
94 95 1.428370 TACACAATGGCGCGATGAGC 61.428 55.000 12.10 0.00 43.95 4.26
95 96 0.578683 CTACACAATGGCGCGATGAG 59.421 55.000 12.10 4.57 0.00 2.90
96 97 0.108377 ACTACACAATGGCGCGATGA 60.108 50.000 12.10 0.00 0.00 2.92
97 98 0.026674 CACTACACAATGGCGCGATG 59.973 55.000 12.10 4.83 0.00 3.84
98 99 1.089481 CCACTACACAATGGCGCGAT 61.089 55.000 12.10 0.00 0.00 4.58
99 100 1.739929 CCACTACACAATGGCGCGA 60.740 57.895 12.10 0.00 0.00 5.87
100 101 1.573829 AACCACTACACAATGGCGCG 61.574 55.000 0.00 0.00 39.84 6.86
101 102 0.109781 CAACCACTACACAATGGCGC 60.110 55.000 0.00 0.00 39.84 6.53
102 103 0.521291 CCAACCACTACACAATGGCG 59.479 55.000 0.00 0.00 39.84 5.69
103 104 0.887933 CCCAACCACTACACAATGGC 59.112 55.000 0.00 0.00 39.84 4.40
104 105 0.887933 GCCCAACCACTACACAATGG 59.112 55.000 0.00 0.00 42.13 3.16
105 106 1.909700 AGCCCAACCACTACACAATG 58.090 50.000 0.00 0.00 0.00 2.82
106 107 2.373836 TGTAGCCCAACCACTACACAAT 59.626 45.455 0.00 0.00 42.82 2.71
107 108 1.769465 TGTAGCCCAACCACTACACAA 59.231 47.619 0.00 0.00 42.82 3.33
108 109 1.425694 TGTAGCCCAACCACTACACA 58.574 50.000 0.00 0.00 42.82 3.72
109 110 2.554370 TTGTAGCCCAACCACTACAC 57.446 50.000 2.51 0.00 46.25 2.90
110 111 2.812613 GCTTTGTAGCCCAACCACTACA 60.813 50.000 0.00 0.00 45.25 2.74
111 112 1.810755 GCTTTGTAGCCCAACCACTAC 59.189 52.381 0.00 0.00 41.74 2.73
112 113 2.194201 GCTTTGTAGCCCAACCACTA 57.806 50.000 0.00 0.00 41.74 2.74
113 114 3.036431 GCTTTGTAGCCCAACCACT 57.964 52.632 0.00 0.00 41.74 4.00
123 124 7.221067 TGTTTCCGTTTTATGTTTGCTTTGTAG 59.779 33.333 0.00 0.00 0.00 2.74
124 125 7.033791 TGTTTCCGTTTTATGTTTGCTTTGTA 58.966 30.769 0.00 0.00 0.00 2.41
125 126 5.869888 TGTTTCCGTTTTATGTTTGCTTTGT 59.130 32.000 0.00 0.00 0.00 2.83
126 127 6.337853 TGTTTCCGTTTTATGTTTGCTTTG 57.662 33.333 0.00 0.00 0.00 2.77
127 128 8.825667 ATATGTTTCCGTTTTATGTTTGCTTT 57.174 26.923 0.00 0.00 0.00 3.51
128 129 8.825667 AATATGTTTCCGTTTTATGTTTGCTT 57.174 26.923 0.00 0.00 0.00 3.91
129 130 7.272515 CGAATATGTTTCCGTTTTATGTTTGCT 59.727 33.333 0.00 0.00 0.00 3.91
130 131 7.380320 CGAATATGTTTCCGTTTTATGTTTGC 58.620 34.615 0.00 0.00 0.00 3.68
131 132 7.380320 GCGAATATGTTTCCGTTTTATGTTTG 58.620 34.615 0.00 0.00 0.00 2.93
132 133 6.249682 CGCGAATATGTTTCCGTTTTATGTTT 59.750 34.615 0.00 0.00 0.00 2.83
133 134 5.735427 CGCGAATATGTTTCCGTTTTATGTT 59.265 36.000 0.00 0.00 0.00 2.71
134 135 5.260140 CGCGAATATGTTTCCGTTTTATGT 58.740 37.500 0.00 0.00 0.00 2.29
135 136 4.668837 CCGCGAATATGTTTCCGTTTTATG 59.331 41.667 8.23 0.00 0.00 1.90
136 137 4.571580 TCCGCGAATATGTTTCCGTTTTAT 59.428 37.500 8.23 0.00 0.00 1.40
137 138 3.931468 TCCGCGAATATGTTTCCGTTTTA 59.069 39.130 8.23 0.00 0.00 1.52
138 139 2.743126 TCCGCGAATATGTTTCCGTTTT 59.257 40.909 8.23 0.00 0.00 2.43
139 140 2.348660 TCCGCGAATATGTTTCCGTTT 58.651 42.857 8.23 0.00 0.00 3.60
140 141 2.012937 TCCGCGAATATGTTTCCGTT 57.987 45.000 8.23 0.00 0.00 4.44
141 142 2.012937 TTCCGCGAATATGTTTCCGT 57.987 45.000 8.23 0.00 0.00 4.69
142 143 2.700694 GTTTCCGCGAATATGTTTCCG 58.299 47.619 8.23 0.00 0.00 4.30
143 144 2.349275 TCGTTTCCGCGAATATGTTTCC 59.651 45.455 8.23 0.00 37.99 3.13
144 145 3.305094 TCTCGTTTCCGCGAATATGTTTC 59.695 43.478 8.23 0.00 40.57 2.78
145 146 3.255725 TCTCGTTTCCGCGAATATGTTT 58.744 40.909 8.23 0.00 40.57 2.83
146 147 2.883574 TCTCGTTTCCGCGAATATGTT 58.116 42.857 8.23 0.00 40.57 2.71
147 148 2.572191 TCTCGTTTCCGCGAATATGT 57.428 45.000 8.23 0.00 40.57 2.29
148 149 2.858344 ACTTCTCGTTTCCGCGAATATG 59.142 45.455 8.23 0.00 37.20 1.78
149 150 3.160777 ACTTCTCGTTTCCGCGAATAT 57.839 42.857 8.23 0.00 37.20 1.28
150 151 2.642139 ACTTCTCGTTTCCGCGAATA 57.358 45.000 8.23 0.00 37.20 1.75
151 152 1.792006 AACTTCTCGTTTCCGCGAAT 58.208 45.000 8.23 0.00 37.20 3.34
152 153 1.574134 AAACTTCTCGTTTCCGCGAA 58.426 45.000 8.23 0.00 41.93 4.70
153 154 3.277652 AAACTTCTCGTTTCCGCGA 57.722 47.368 8.23 0.00 41.93 5.87
160 161 5.293569 AGACACGAAAATGAAACTTCTCGTT 59.706 36.000 0.00 0.00 33.83 3.85
161 162 4.809426 AGACACGAAAATGAAACTTCTCGT 59.191 37.500 0.00 0.00 35.61 4.18
162 163 5.133264 CAGACACGAAAATGAAACTTCTCG 58.867 41.667 0.00 0.00 0.00 4.04
163 164 6.049263 ACAGACACGAAAATGAAACTTCTC 57.951 37.500 0.00 0.00 0.00 2.87
164 165 6.436843 AACAGACACGAAAATGAAACTTCT 57.563 33.333 0.00 0.00 0.00 2.85
165 166 6.745450 TGAAACAGACACGAAAATGAAACTTC 59.255 34.615 0.00 0.00 0.00 3.01
166 167 6.616947 TGAAACAGACACGAAAATGAAACTT 58.383 32.000 0.00 0.00 0.00 2.66
167 168 6.189677 TGAAACAGACACGAAAATGAAACT 57.810 33.333 0.00 0.00 0.00 2.66
168 169 6.142320 GGATGAAACAGACACGAAAATGAAAC 59.858 38.462 0.00 0.00 0.00 2.78
169 170 6.205784 GGATGAAACAGACACGAAAATGAAA 58.794 36.000 0.00 0.00 0.00 2.69
170 171 5.559991 CGGATGAAACAGACACGAAAATGAA 60.560 40.000 0.00 0.00 0.00 2.57
171 172 4.084066 CGGATGAAACAGACACGAAAATGA 60.084 41.667 0.00 0.00 0.00 2.57
172 173 4.084066 TCGGATGAAACAGACACGAAAATG 60.084 41.667 0.00 0.00 0.00 2.32
173 174 4.062293 TCGGATGAAACAGACACGAAAAT 58.938 39.130 0.00 0.00 0.00 1.82
174 175 3.459145 TCGGATGAAACAGACACGAAAA 58.541 40.909 0.00 0.00 0.00 2.29
175 176 3.100658 TCGGATGAAACAGACACGAAA 57.899 42.857 0.00 0.00 0.00 3.46
176 177 2.804697 TCGGATGAAACAGACACGAA 57.195 45.000 0.00 0.00 0.00 3.85
177 178 2.804697 TTCGGATGAAACAGACACGA 57.195 45.000 0.00 0.00 0.00 4.35
178 179 3.870723 TTTTCGGATGAAACAGACACG 57.129 42.857 0.00 0.00 43.54 4.49
179 180 5.628134 GGTATTTTCGGATGAAACAGACAC 58.372 41.667 0.00 0.00 43.54 3.67
180 181 4.390603 CGGTATTTTCGGATGAAACAGACA 59.609 41.667 0.00 0.00 43.54 3.41
181 182 4.390909 ACGGTATTTTCGGATGAAACAGAC 59.609 41.667 0.00 0.00 43.54 3.51
182 183 4.571919 ACGGTATTTTCGGATGAAACAGA 58.428 39.130 0.00 0.00 43.54 3.41
183 184 4.939509 ACGGTATTTTCGGATGAAACAG 57.060 40.909 0.00 0.00 43.54 3.16
184 185 4.154556 GGAACGGTATTTTCGGATGAAACA 59.845 41.667 0.00 0.00 43.54 2.83
185 186 4.154556 TGGAACGGTATTTTCGGATGAAAC 59.845 41.667 0.00 0.00 43.54 2.78
186 187 4.325119 TGGAACGGTATTTTCGGATGAAA 58.675 39.130 0.00 0.00 42.21 2.69
187 188 3.940319 TGGAACGGTATTTTCGGATGAA 58.060 40.909 0.00 0.00 0.00 2.57
188 189 3.613494 TGGAACGGTATTTTCGGATGA 57.387 42.857 0.00 0.00 0.00 2.92
189 190 4.893424 AATGGAACGGTATTTTCGGATG 57.107 40.909 0.00 0.00 0.00 3.51
190 191 5.907866 AAAATGGAACGGTATTTTCGGAT 57.092 34.783 0.00 0.00 32.63 4.18
191 192 5.708877 AAAAATGGAACGGTATTTTCGGA 57.291 34.783 0.00 0.00 35.94 4.55
231 232 9.949174 GCAAAATGGAAATGTAAATTGAACTTT 57.051 25.926 0.00 0.00 0.00 2.66
232 233 9.118300 TGCAAAATGGAAATGTAAATTGAACTT 57.882 25.926 0.00 0.00 0.00 2.66
233 234 8.674263 TGCAAAATGGAAATGTAAATTGAACT 57.326 26.923 0.00 0.00 0.00 3.01
234 235 9.727627 TTTGCAAAATGGAAATGTAAATTGAAC 57.272 25.926 10.02 0.00 32.73 3.18
238 239 9.911138 GGAATTTGCAAAATGGAAATGTAAATT 57.089 25.926 17.19 11.66 45.56 1.82
239 240 9.299465 AGGAATTTGCAAAATGGAAATGTAAAT 57.701 25.926 17.19 0.00 45.56 1.40
240 241 8.688747 AGGAATTTGCAAAATGGAAATGTAAA 57.311 26.923 17.19 0.00 45.56 2.01
241 242 8.688747 AAGGAATTTGCAAAATGGAAATGTAA 57.311 26.923 17.19 0.00 45.56 2.41
242 243 8.688747 AAAGGAATTTGCAAAATGGAAATGTA 57.311 26.923 17.19 0.00 45.56 2.29
243 244 7.585579 AAAGGAATTTGCAAAATGGAAATGT 57.414 28.000 17.19 0.00 45.56 2.71
244 245 8.874744 AAAAAGGAATTTGCAAAATGGAAATG 57.125 26.923 17.19 0.00 45.56 2.32
311 312 0.949397 AAACGGAGCGGAAACTTTCC 59.051 50.000 10.22 10.22 46.62 3.13
312 313 1.398071 CGAAACGGAGCGGAAACTTTC 60.398 52.381 0.00 0.00 0.00 2.62
313 314 0.584876 CGAAACGGAGCGGAAACTTT 59.415 50.000 0.00 0.00 0.00 2.66
314 315 2.231820 CGAAACGGAGCGGAAACTT 58.768 52.632 0.00 0.00 0.00 2.66
315 316 3.946907 CGAAACGGAGCGGAAACT 58.053 55.556 0.00 0.00 0.00 2.66
326 327 5.045215 TGCAGTAAATATAGGACCGAAACG 58.955 41.667 0.00 0.00 0.00 3.60
327 328 8.597662 TTATGCAGTAAATATAGGACCGAAAC 57.402 34.615 0.00 0.00 0.00 2.78
328 329 9.268268 CTTTATGCAGTAAATATAGGACCGAAA 57.732 33.333 0.00 0.00 32.12 3.46
329 330 8.644216 TCTTTATGCAGTAAATATAGGACCGAA 58.356 33.333 0.00 0.00 32.12 4.30
330 331 8.185506 TCTTTATGCAGTAAATATAGGACCGA 57.814 34.615 0.00 0.00 32.12 4.69
331 332 9.088512 GATCTTTATGCAGTAAATATAGGACCG 57.911 37.037 0.00 0.00 32.12 4.79
332 333 9.944376 TGATCTTTATGCAGTAAATATAGGACC 57.056 33.333 0.00 0.00 32.12 4.46
344 345 9.618890 AACAATACAGTATGATCTTTATGCAGT 57.381 29.630 0.00 0.00 39.69 4.40
350 351 9.378551 AGCGAAAACAATACAGTATGATCTTTA 57.621 29.630 0.00 0.00 39.69 1.85
351 352 8.268850 AGCGAAAACAATACAGTATGATCTTT 57.731 30.769 0.00 0.00 39.69 2.52
352 353 7.849804 AGCGAAAACAATACAGTATGATCTT 57.150 32.000 0.00 0.00 39.69 2.40
353 354 7.849804 AAGCGAAAACAATACAGTATGATCT 57.150 32.000 0.00 0.00 39.69 2.75
354 355 8.818057 ACTAAGCGAAAACAATACAGTATGATC 58.182 33.333 0.00 0.00 39.69 2.92
355 356 8.604035 CACTAAGCGAAAACAATACAGTATGAT 58.396 33.333 0.00 0.00 39.69 2.45
356 357 7.815549 TCACTAAGCGAAAACAATACAGTATGA 59.184 33.333 0.00 0.00 39.69 2.15
357 358 7.959733 TCACTAAGCGAAAACAATACAGTATG 58.040 34.615 0.00 0.00 46.00 2.39
358 359 8.718102 ATCACTAAGCGAAAACAATACAGTAT 57.282 30.769 0.00 0.00 0.00 2.12
359 360 7.008901 CGATCACTAAGCGAAAACAATACAGTA 59.991 37.037 0.00 0.00 0.00 2.74
360 361 6.183360 CGATCACTAAGCGAAAACAATACAGT 60.183 38.462 0.00 0.00 0.00 3.55
361 362 6.178507 CGATCACTAAGCGAAAACAATACAG 58.821 40.000 0.00 0.00 0.00 2.74
362 363 5.445407 GCGATCACTAAGCGAAAACAATACA 60.445 40.000 0.00 0.00 0.00 2.29
370 371 2.259618 GTCTGCGATCACTAAGCGAAA 58.740 47.619 0.00 0.00 0.00 3.46
379 380 1.126846 CAAAAGGACGTCTGCGATCAC 59.873 52.381 16.46 0.00 42.00 3.06
380 381 1.428448 CAAAAGGACGTCTGCGATCA 58.572 50.000 16.46 0.00 42.00 2.92
381 382 0.095417 GCAAAAGGACGTCTGCGATC 59.905 55.000 16.46 0.00 42.00 3.69
382 383 0.320771 AGCAAAAGGACGTCTGCGAT 60.321 50.000 16.46 0.00 42.00 4.58
384 385 0.438830 GTAGCAAAAGGACGTCTGCG 59.561 55.000 16.46 1.26 44.93 5.18
385 386 0.796927 GGTAGCAAAAGGACGTCTGC 59.203 55.000 16.46 16.85 34.96 4.26
386 387 2.163818 TGGTAGCAAAAGGACGTCTG 57.836 50.000 16.46 6.85 0.00 3.51
387 388 4.546829 TTATGGTAGCAAAAGGACGTCT 57.453 40.909 16.46 0.00 0.00 4.18
394 395 6.599437 GCCACGTATATTATGGTAGCAAAAG 58.401 40.000 0.00 0.00 35.79 2.27
401 402 4.761227 TCTGACGCCACGTATATTATGGTA 59.239 41.667 0.00 0.00 41.37 3.25
404 405 5.633601 ACAATCTGACGCCACGTATATTATG 59.366 40.000 0.00 0.00 41.37 1.90
410 411 1.640428 CACAATCTGACGCCACGTAT 58.360 50.000 0.00 0.00 41.37 3.06
418 419 2.669924 CACATGTCTCCACAATCTGACG 59.330 50.000 0.00 0.00 35.64 4.35
419 420 3.005554 CCACATGTCTCCACAATCTGAC 58.994 50.000 0.00 0.00 35.64 3.51
485 486 1.728971 GAGCAAACGGACATGAGTCAG 59.271 52.381 0.00 0.00 46.80 3.51
512 513 2.639839 GGCCAGCCCAGAGATTAATCTA 59.360 50.000 17.94 0.00 37.25 1.98
516 517 1.526887 CGGCCAGCCCAGAGATTAA 59.473 57.895 2.24 0.00 0.00 1.40
518 519 3.801997 CCGGCCAGCCCAGAGATT 61.802 66.667 2.24 0.00 0.00 2.40
536 537 7.547019 TCATTCAGTTTTGTAGTGCTATCTGAG 59.453 37.037 0.00 0.00 33.36 3.35
537 538 7.386059 TCATTCAGTTTTGTAGTGCTATCTGA 58.614 34.615 0.00 0.00 0.00 3.27
572 576 3.274288 CCTGCCAGTCCTACATTCTTTC 58.726 50.000 0.00 0.00 0.00 2.62
591 595 1.115467 CACCTAGGAATCGTGAGCCT 58.885 55.000 17.98 0.00 35.82 4.58
614 618 7.224362 TGGAGTATAAAAGTTGAACGAACGAAA 59.776 33.333 0.14 0.00 39.80 3.46
644 650 4.157656 CGGGATTTGGTTATTTCTCTTGCA 59.842 41.667 0.00 0.00 0.00 4.08
654 660 1.474498 GGCTCGTCGGGATTTGGTTAT 60.474 52.381 0.00 0.00 0.00 1.89
691 707 2.303549 CTGCACCGGAGAGATGGGAC 62.304 65.000 9.46 0.00 0.00 4.46
692 708 2.038813 TGCACCGGAGAGATGGGA 59.961 61.111 9.46 0.00 0.00 4.37
693 709 2.503061 CTGCACCGGAGAGATGGG 59.497 66.667 9.46 0.00 0.00 4.00
694 710 2.202987 GCTGCACCGGAGAGATGG 60.203 66.667 9.46 0.00 0.00 3.51
695 711 2.004808 TACGCTGCACCGGAGAGATG 62.005 60.000 9.46 0.00 0.00 2.90
696 712 1.753078 TACGCTGCACCGGAGAGAT 60.753 57.895 9.46 0.00 0.00 2.75
697 713 2.360726 TACGCTGCACCGGAGAGA 60.361 61.111 9.46 0.00 0.00 3.10
698 714 2.202623 GTACGCTGCACCGGAGAG 60.203 66.667 9.46 0.00 0.00 3.20
699 715 2.986979 TGTACGCTGCACCGGAGA 60.987 61.111 9.46 0.00 0.00 3.71
700 716 2.809601 GTGTACGCTGCACCGGAG 60.810 66.667 9.46 0.00 0.00 4.63
816 832 0.252197 ACACCAAGGCTTCGGTATCC 59.748 55.000 17.22 0.00 32.98 2.59
819 835 0.034337 GACACACCAAGGCTTCGGTA 59.966 55.000 17.22 0.00 32.98 4.02
827 843 2.669569 CGGCAGGACACACCAAGG 60.670 66.667 0.00 0.00 42.04 3.61
991 1007 2.170817 GGTACCCTTCCATCCTCACTTC 59.829 54.545 0.00 0.00 0.00 3.01
992 1008 2.197465 GGTACCCTTCCATCCTCACTT 58.803 52.381 0.00 0.00 0.00 3.16
1312 1328 3.552132 TTGCACAACTCTACTGGACAA 57.448 42.857 0.00 0.00 0.00 3.18
1330 1350 5.404096 TGTGATGCATGTCAGCTTATTTTG 58.596 37.500 2.46 0.00 34.99 2.44
1388 1408 4.451150 TGGTGGTGCGCGGAGATC 62.451 66.667 8.83 0.00 0.00 2.75
1403 1423 2.815211 CACCTGCCGATCGTGTGG 60.815 66.667 15.09 14.17 0.00 4.17
1601 1621 2.345244 CAGTGCGAGGCCAGAAGT 59.655 61.111 5.01 0.00 0.00 3.01
1733 1753 1.400494 GTGCGTGTTTTCTCACCTGTT 59.600 47.619 0.00 0.00 35.18 3.16
1743 1763 0.237235 CAGTATGGCGTGCGTGTTTT 59.763 50.000 0.00 0.00 0.00 2.43
1757 1777 9.993454 TCATACGTACTATGTAAGAGACAGTAT 57.007 33.333 0.00 0.00 42.79 2.12
1768 1788 6.426025 ACTCGCAATCTCATACGTACTATGTA 59.574 38.462 0.00 0.00 34.74 2.29
1769 1789 5.238868 ACTCGCAATCTCATACGTACTATGT 59.761 40.000 0.00 0.00 34.74 2.29
1770 1790 5.690816 ACTCGCAATCTCATACGTACTATG 58.309 41.667 0.00 0.00 34.47 2.23
1771 1791 5.943706 ACTCGCAATCTCATACGTACTAT 57.056 39.130 0.00 0.00 0.00 2.12
1772 1792 5.746307 AACTCGCAATCTCATACGTACTA 57.254 39.130 0.00 0.00 0.00 1.82
1773 1793 4.634184 AACTCGCAATCTCATACGTACT 57.366 40.909 0.00 0.00 0.00 2.73
1774 1794 4.375117 CGTAACTCGCAATCTCATACGTAC 59.625 45.833 0.00 0.00 32.39 3.67
1775 1795 4.521010 CGTAACTCGCAATCTCATACGTA 58.479 43.478 0.00 0.00 32.39 3.57
2244 2264 1.002868 CTCCACCCACTCCTGCTTG 60.003 63.158 0.00 0.00 0.00 4.01
2319 2339 0.170561 TAAGCCTGAGCGACTCGAAC 59.829 55.000 1.63 0.00 46.67 3.95
2343 2363 2.726832 ACAGCCTTCAGACTTACGAC 57.273 50.000 0.00 0.00 0.00 4.34
2359 2380 3.755378 AGGCAAGACAAGCATAGAAACAG 59.245 43.478 0.00 0.00 0.00 3.16
2370 2395 1.579932 CAGCTGCAGGCAAGACAAG 59.420 57.895 17.12 0.00 44.79 3.16
2466 2491 9.872721 TTATATTTACACATGGAACTCGTACAA 57.127 29.630 0.00 0.00 0.00 2.41
2522 2554 6.721321 ACTGTTAACAAAACATCTTACCACG 58.279 36.000 10.03 0.00 0.00 4.94
2526 2558 9.607285 CATGGTACTGTTAACAAAACATCTTAC 57.393 33.333 15.03 5.49 0.00 2.34
2559 2591 4.977963 CCACAGCAACTTTTTGTACATCAG 59.022 41.667 0.00 0.00 34.90 2.90
2649 2682 7.649973 TCTAAGATCGCAAGGATAAGTCTTAC 58.350 38.462 0.00 0.00 34.82 2.34
2662 2695 4.115516 GCTCAACTGATCTAAGATCGCAA 58.884 43.478 0.00 0.00 0.00 4.85
2669 2702 5.083533 ACTCAAGGCTCAACTGATCTAAG 57.916 43.478 0.00 0.00 0.00 2.18
2718 2751 5.769162 TGATTGACATTCTGTTCACAATGGA 59.231 36.000 0.00 0.00 34.77 3.41
2730 2763 6.363065 AGCTAATGTGGATGATTGACATTCT 58.637 36.000 0.00 0.00 40.12 2.40
2745 2778 8.761575 ATAAATTGGTTGAACAAGCTAATGTG 57.238 30.769 15.77 0.00 39.38 3.21
2761 2794 9.981460 AGAAAGGAGAAAGACATATAAATTGGT 57.019 29.630 0.00 0.00 0.00 3.67
2766 2799 7.065803 CGGCAAGAAAGGAGAAAGACATATAAA 59.934 37.037 0.00 0.00 0.00 1.40
2767 2800 6.538742 CGGCAAGAAAGGAGAAAGACATATAA 59.461 38.462 0.00 0.00 0.00 0.98
2768 2801 6.049149 CGGCAAGAAAGGAGAAAGACATATA 58.951 40.000 0.00 0.00 0.00 0.86
2779 2812 1.004918 ACGGACGGCAAGAAAGGAG 60.005 57.895 0.00 0.00 0.00 3.69
2790 2823 2.431771 TCATTGTGCGACGGACGG 60.432 61.111 14.94 7.11 42.83 4.79
2797 2830 1.514678 GGTGCCAAGTCATTGTGCGA 61.515 55.000 0.00 0.00 36.17 5.10
2804 2837 0.904649 TCGATCAGGTGCCAAGTCAT 59.095 50.000 0.00 0.00 0.00 3.06
2821 2854 6.422701 TGTTAGACACTCTAAACCAAATGTCG 59.577 38.462 0.00 0.00 40.30 4.35
2890 2926 1.002134 CCAACTCCGGCATCACCTT 60.002 57.895 0.00 0.00 35.61 3.50
2932 2971 1.108776 ATGTGCACCAAGATCCATGC 58.891 50.000 15.69 0.00 38.59 4.06
2954 2993 3.735720 TGGGTTGGATGTCATCATTGA 57.264 42.857 14.72 0.00 34.06 2.57
3043 3082 2.750237 GTTTGCCCCCTACCGCAG 60.750 66.667 0.00 0.00 36.14 5.18
3046 3085 1.969589 GTGTGTTTGCCCCCTACCG 60.970 63.158 0.00 0.00 0.00 4.02
3047 3086 0.468400 TTGTGTGTTTGCCCCCTACC 60.468 55.000 0.00 0.00 0.00 3.18
3049 3088 2.160721 TTTTGTGTGTTTGCCCCCTA 57.839 45.000 0.00 0.00 0.00 3.53
3051 3090 2.340210 ATTTTTGTGTGTTTGCCCCC 57.660 45.000 0.00 0.00 0.00 5.40
3109 3148 2.899838 CCACCCCACACACACACG 60.900 66.667 0.00 0.00 0.00 4.49
3133 3172 2.488771 CTTGGTGCATCTCAGGGGCA 62.489 60.000 0.00 0.00 34.70 5.36
3134 3173 1.751927 CTTGGTGCATCTCAGGGGC 60.752 63.158 0.00 0.00 0.00 5.80
3135 3174 1.751927 GCTTGGTGCATCTCAGGGG 60.752 63.158 0.00 0.00 42.31 4.79
3136 3175 0.747283 GAGCTTGGTGCATCTCAGGG 60.747 60.000 0.00 0.00 45.94 4.45
3137 3176 0.747283 GGAGCTTGGTGCATCTCAGG 60.747 60.000 0.00 0.00 45.94 3.86
3174 3213 5.468746 CGGTGAGAAAAATTCCAGTTACTCA 59.531 40.000 0.00 0.00 0.00 3.41
3175 3214 5.699458 TCGGTGAGAAAAATTCCAGTTACTC 59.301 40.000 0.00 0.00 0.00 2.59
3197 3236 3.256879 ACCATAGGACTACATCATGCTCG 59.743 47.826 0.00 0.00 0.00 5.03
3234 3273 4.003648 GTGGAGGATGAATCTCGTTGTTT 58.996 43.478 0.00 0.00 32.34 2.83
3243 3282 1.869767 GTGCATCGTGGAGGATGAATC 59.130 52.381 12.41 0.00 45.27 2.52
3263 3302 3.370366 CAGATGAAGAAGAGCTCAAACCG 59.630 47.826 17.77 0.00 0.00 4.44
3265 3304 5.873712 TGATCAGATGAAGAAGAGCTCAAAC 59.126 40.000 17.77 6.60 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.