Multiple sequence alignment - TraesCS6D01G230400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G230400 chr6D 100.000 9597 0 0 1 9597 323691982 323701578 0.000000e+00 17723.0
1 TraesCS6D01G230400 chr6D 92.982 171 12 0 5001 5171 319689584 319689414 5.750000e-62 250.0
2 TraesCS6D01G230400 chr6D 91.908 173 14 0 5001 5173 463869908 463869736 9.630000e-60 243.0
3 TraesCS6D01G230400 chr6D 90.857 175 15 1 5001 5174 95293860 95293686 5.800000e-57 233.0
4 TraesCS6D01G230400 chr6D 90.909 165 14 1 5001 5164 128903074 128903238 4.510000e-53 220.0
5 TraesCS6D01G230400 chr6D 90.909 165 14 1 5001 5164 317477377 317477213 4.510000e-53 220.0
6 TraesCS6D01G230400 chr6B 95.009 2685 84 13 4855 7507 500227345 500224679 0.000000e+00 4170.0
7 TraesCS6D01G230400 chr6B 95.948 1604 43 16 2405 3997 500229856 500228264 0.000000e+00 2582.0
8 TraesCS6D01G230400 chr6B 94.323 1550 59 19 746 2282 500231387 500229854 0.000000e+00 2348.0
9 TraesCS6D01G230400 chr6B 90.088 1483 73 31 7580 9033 500224656 500223219 0.000000e+00 1857.0
10 TraesCS6D01G230400 chr6B 91.655 719 18 8 4166 4857 500228163 500227460 0.000000e+00 957.0
11 TraesCS6D01G230400 chr6B 93.605 172 10 1 5001 5172 720714620 720714450 1.240000e-63 255.0
12 TraesCS6D01G230400 chr6B 81.793 357 15 13 9281 9597 500222579 500222233 4.450000e-63 254.0
13 TraesCS6D01G230400 chr6B 97.403 77 2 0 9048 9124 500223167 500223091 2.170000e-26 132.0
14 TraesCS6D01G230400 chr6B 84.106 151 6 5 9321 9453 500222940 500222790 7.820000e-26 130.0
15 TraesCS6D01G230400 chr6B 95.312 64 3 0 5423 5486 500224949 500224886 1.710000e-17 102.0
16 TraesCS6D01G230400 chr6B 98.182 55 1 0 9229 9283 500222669 500222615 7.930000e-16 97.1
17 TraesCS6D01G230400 chr6B 92.727 55 1 1 9140 9194 500223098 500223047 1.030000e-09 76.8
18 TraesCS6D01G230400 chr6B 97.059 34 1 0 9282 9315 500223003 500222970 3.740000e-04 58.4
19 TraesCS6D01G230400 chr6A 88.644 2492 138 50 6185 8624 461135115 461137513 0.000000e+00 2900.0
20 TraesCS6D01G230400 chr6A 95.968 1141 33 9 733 1867 461129599 461130732 0.000000e+00 1840.0
21 TraesCS6D01G230400 chr6A 89.222 1299 80 19 2735 3996 461131807 461133082 0.000000e+00 1568.0
22 TraesCS6D01G230400 chr6A 86.650 779 63 17 5179 5932 461133991 461134753 0.000000e+00 824.0
23 TraesCS6D01G230400 chr6A 86.111 756 41 26 4263 4986 461133279 461134002 0.000000e+00 756.0
24 TraesCS6D01G230400 chr6A 88.748 631 31 17 8621 9225 461137674 461138290 0.000000e+00 736.0
25 TraesCS6D01G230400 chr6A 88.837 215 23 1 2005 2218 461131121 461131335 7.390000e-66 263.0
26 TraesCS6D01G230400 chr6A 92.353 170 13 0 5001 5170 562525376 562525545 9.630000e-60 243.0
27 TraesCS6D01G230400 chr6A 90.608 181 15 2 5001 5179 430337448 430337268 1.250000e-58 239.0
28 TraesCS6D01G230400 chr6A 94.805 154 7 1 9414 9566 461138575 461138728 1.250000e-58 239.0
29 TraesCS6D01G230400 chr6A 93.443 61 4 0 5423 5483 461136134 461136194 3.690000e-14 91.6
30 TraesCS6D01G230400 chr6A 97.619 42 1 0 6127 6168 461135115 461135156 1.340000e-08 73.1
31 TraesCS6D01G230400 chr6A 100.000 31 0 0 9310 9340 461138459 461138489 3.740000e-04 58.4
32 TraesCS6D01G230400 chr2D 91.929 731 55 4 3 731 42736726 42735998 0.000000e+00 1020.0
33 TraesCS6D01G230400 chr2D 89.675 707 69 4 3 707 588223305 588224009 0.000000e+00 898.0
34 TraesCS6D01G230400 chr2D 100.000 129 0 0 2279 2407 588500228 588500356 1.250000e-58 239.0
35 TraesCS6D01G230400 chr7D 90.748 735 63 5 3 734 569207092 569206360 0.000000e+00 976.0
36 TraesCS6D01G230400 chr7D 92.462 199 12 2 3996 4193 50710243 50710439 2.040000e-71 281.0
37 TraesCS6D01G230400 chr5D 90.834 731 61 6 3 731 28320304 28319578 0.000000e+00 974.0
38 TraesCS6D01G230400 chr5D 99.383 162 1 0 3996 4157 92111549 92111710 2.620000e-75 294.0
39 TraesCS6D01G230400 chr5D 92.442 172 13 0 5001 5172 62177110 62177281 7.440000e-61 246.0
40 TraesCS6D01G230400 chr5D 95.683 139 4 2 2281 2418 361647942 361648079 1.250000e-53 222.0
41 TraesCS6D01G230400 chr2A 89.771 743 68 7 3 740 290066710 290065971 0.000000e+00 944.0
42 TraesCS6D01G230400 chr2A 90.289 381 29 7 3 377 437969936 437970314 8.660000e-135 492.0
43 TraesCS6D01G230400 chr5A 89.754 732 48 6 4 731 667102230 667101522 0.000000e+00 911.0
44 TraesCS6D01G230400 chr5A 98.204 167 3 0 3991 4157 382566633 382566799 9.430000e-75 292.0
45 TraesCS6D01G230400 chr7A 89.241 725 71 7 3 725 674809709 674810428 0.000000e+00 900.0
46 TraesCS6D01G230400 chr7A 96.571 175 6 0 3993 4167 320981170 320981344 3.390000e-74 291.0
47 TraesCS6D01G230400 chr7A 93.258 178 12 0 5001 5178 83785003 83784826 7.390000e-66 263.0
48 TraesCS6D01G230400 chr7A 96.350 137 4 1 2280 2416 343843841 343843706 3.490000e-54 224.0
49 TraesCS6D01G230400 chr3D 88.612 641 63 9 83 718 359348405 359349040 0.000000e+00 771.0
50 TraesCS6D01G230400 chr3D 95.506 178 6 2 3995 4172 409922105 409921930 5.670000e-72 283.0
51 TraesCS6D01G230400 chr3D 94.083 169 10 0 5001 5169 422517625 422517793 3.440000e-64 257.0
52 TraesCS6D01G230400 chr1B 88.154 650 66 9 3 650 639940309 639939669 0.000000e+00 763.0
53 TraesCS6D01G230400 chr1B 91.045 201 13 5 3959 4157 336774613 336774416 5.710000e-67 267.0
54 TraesCS6D01G230400 chr5B 96.000 175 6 1 3993 4167 577516217 577516044 5.670000e-72 283.0
55 TraesCS6D01G230400 chr5B 94.545 165 9 0 5006 5170 574956609 574956445 1.240000e-63 255.0
56 TraesCS6D01G230400 chr5B 89.418 189 18 2 5001 5189 147439644 147439830 4.480000e-58 237.0
57 TraesCS6D01G230400 chr5B 98.485 132 2 0 2279 2410 640272869 640272738 5.800000e-57 233.0
58 TraesCS6D01G230400 chr4B 94.972 179 9 0 3989 4167 512755241 512755419 2.040000e-71 281.0
59 TraesCS6D01G230400 chr4B 92.398 171 12 1 5006 5176 143309626 143309795 9.630000e-60 243.0
60 TraesCS6D01G230400 chr4B 90.055 181 17 1 5001 5181 588430830 588431009 5.800000e-57 233.0
61 TraesCS6D01G230400 chr4B 98.473 131 2 0 2279 2409 180671161 180671291 2.080000e-56 231.0
62 TraesCS6D01G230400 chr2B 94.086 186 9 2 3973 4157 404425728 404425912 2.040000e-71 281.0
63 TraesCS6D01G230400 chr4D 93.642 173 11 0 5001 5173 482703456 482703628 9.560000e-65 259.0
64 TraesCS6D01G230400 chr4D 91.716 169 14 0 5001 5169 23322889 23322721 1.610000e-57 235.0
65 TraesCS6D01G230400 chr4D 90.110 182 16 2 5001 5180 478512356 478512175 1.610000e-57 235.0
66 TraesCS6D01G230400 chr4D 89.385 179 19 0 5001 5179 428723785 428723963 9.700000e-55 226.0
67 TraesCS6D01G230400 chr4D 89.385 179 18 1 5001 5178 421896351 421896529 3.490000e-54 224.0
68 TraesCS6D01G230400 chr4D 95.035 141 7 0 2268 2408 439129940 439129800 1.250000e-53 222.0
69 TraesCS6D01G230400 chr3A 93.642 173 11 0 5001 5173 353624427 353624599 9.560000e-65 259.0
70 TraesCS6D01G230400 chrUn 91.111 180 15 1 5001 5180 277314218 277314040 9.630000e-60 243.0
71 TraesCS6D01G230400 chrUn 90.116 172 16 1 5001 5171 395339950 395339779 1.250000e-53 222.0
72 TraesCS6D01G230400 chrUn 89.595 173 17 1 5001 5172 12801790 12801962 1.620000e-52 219.0
73 TraesCS6D01G230400 chrUn 89.349 169 18 0 5001 5169 310882936 310883104 7.550000e-51 213.0
74 TraesCS6D01G230400 chrUn 92.308 143 10 1 5001 5143 186910999 186910858 1.630000e-47 202.0
75 TraesCS6D01G230400 chrUn 92.308 143 10 1 5001 5143 267270751 267270610 1.630000e-47 202.0
76 TraesCS6D01G230400 chrUn 87.283 173 22 0 5001 5173 17536862 17536690 2.110000e-46 198.0
77 TraesCS6D01G230400 chrUn 86.145 166 22 1 5006 5171 43588817 43588653 2.750000e-40 178.0
78 TraesCS6D01G230400 chrUn 86.145 166 22 1 5006 5171 327178687 327178523 2.750000e-40 178.0
79 TraesCS6D01G230400 chr1D 99.259 135 0 1 2281 2415 7692240 7692107 9.630000e-60 243.0
80 TraesCS6D01G230400 chr1D 90.698 172 16 0 5001 5172 317429462 317429633 7.500000e-56 230.0
81 TraesCS6D01G230400 chr1D 95.714 140 4 2 2281 2419 38256843 38256705 3.490000e-54 224.0
82 TraesCS6D01G230400 chr1A 90.960 177 16 0 5001 5177 515551308 515551484 1.250000e-58 239.0
83 TraesCS6D01G230400 chr1A 90.909 176 15 1 5001 5175 82525896 82526071 1.610000e-57 235.0
84 TraesCS6D01G230400 chr3B 90.566 159 12 3 2266 2423 723626468 723626624 3.510000e-49 207.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G230400 chr6D 323691982 323701578 9596 False 17723.000000 17723 100.000000 1 9597 1 chr6D.!!$F2 9596
1 TraesCS6D01G230400 chr6B 500222233 500231387 9154 True 1063.691667 4170 92.800417 746 9597 12 chr6B.!!$R2 8851
2 TraesCS6D01G230400 chr6A 461129599 461138728 9129 False 849.918182 2900 91.822455 733 9566 11 chr6A.!!$F2 8833
3 TraesCS6D01G230400 chr2D 42735998 42736726 728 True 1020.000000 1020 91.929000 3 731 1 chr2D.!!$R1 728
4 TraesCS6D01G230400 chr2D 588223305 588224009 704 False 898.000000 898 89.675000 3 707 1 chr2D.!!$F1 704
5 TraesCS6D01G230400 chr7D 569206360 569207092 732 True 976.000000 976 90.748000 3 734 1 chr7D.!!$R1 731
6 TraesCS6D01G230400 chr5D 28319578 28320304 726 True 974.000000 974 90.834000 3 731 1 chr5D.!!$R1 728
7 TraesCS6D01G230400 chr2A 290065971 290066710 739 True 944.000000 944 89.771000 3 740 1 chr2A.!!$R1 737
8 TraesCS6D01G230400 chr5A 667101522 667102230 708 True 911.000000 911 89.754000 4 731 1 chr5A.!!$R1 727
9 TraesCS6D01G230400 chr7A 674809709 674810428 719 False 900.000000 900 89.241000 3 725 1 chr7A.!!$F2 722
10 TraesCS6D01G230400 chr3D 359348405 359349040 635 False 771.000000 771 88.612000 83 718 1 chr3D.!!$F1 635
11 TraesCS6D01G230400 chr1B 639939669 639940309 640 True 763.000000 763 88.154000 3 650 1 chr1B.!!$R2 647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
922 970 0.032416 CGTCCTTTCCTCCTCCCCTA 60.032 60.000 0.00 0.00 0.00 3.53 F
1988 2121 1.065600 TGCAAGGAAAACGCTGTGC 59.934 52.632 0.00 0.00 0.00 4.57 F
2291 2652 0.038166 TTACCGTGTACTCCCTCCGT 59.962 55.000 0.00 0.00 0.00 4.69 F
2297 2658 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28 F
2298 2659 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44 F
4161 4631 0.115745 TTAGGAACGGAGGGACCAGT 59.884 55.000 0.00 0.00 38.90 4.00 F
4164 4634 0.248565 GGAACGGAGGGACCAGTTAC 59.751 60.000 0.00 0.00 36.27 2.50 F
5093 5811 0.394352 AATGTAGGGAAAGGCTGCGG 60.394 55.000 0.00 0.00 0.00 5.69 F
5845 6594 2.346847 GCAGCACTAGTCAAATCAGACG 59.653 50.000 0.00 0.00 43.24 4.18 F
7292 8210 0.883833 CATCTGCCAAGTTGGACCAC 59.116 55.000 26.52 8.18 40.96 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2281 2642 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.0 0.00 3.85 R
3553 3999 1.982395 GCCAAACCCTTGCTACCCC 60.982 63.158 0.00 0.0 0.00 4.95 R
4144 4614 0.115745 TAACTGGTCCCTCCGTTCCT 59.884 55.000 0.00 0.0 39.52 3.36 R
4145 4615 0.248565 GTAACTGGTCCCTCCGTTCC 59.751 60.000 0.00 0.0 39.52 3.62 R
4277 4848 4.322049 GCTGCACCTAGTCTAGTTTCTTCA 60.322 45.833 6.15 0.0 0.00 3.02 R
5258 5978 0.111061 TGCAGAACTGTGAGGGCAAT 59.889 50.000 3.77 0.0 0.00 3.56 R
5845 6594 0.310854 GCAAGTAACACTGGCACCAC 59.689 55.000 0.71 0.0 44.56 4.16 R
6817 7735 2.228822 CACCGAAGAGGAAAACAATGGG 59.771 50.000 0.00 0.0 45.00 4.00 R
7522 8452 0.039165 GCCAGCCAGCAAACAAGTAC 60.039 55.000 0.00 0.0 0.00 2.73 R
9195 10741 0.249398 AGAACATACCGGCTTTCGCT 59.751 50.000 0.00 0.0 37.59 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 1.679032 GGCGAACTAGTTTCTGCCCAT 60.679 52.381 25.43 0.00 42.93 4.00
91 92 4.876107 CGAACTAGTTTCTGCCCATACAAT 59.124 41.667 10.02 0.00 31.20 2.71
168 169 0.039256 CGTTGTTGGATGGCAACTGG 60.039 55.000 0.00 0.00 41.80 4.00
193 215 1.556564 CGCGTACATGACAACTAGGG 58.443 55.000 0.00 0.00 0.00 3.53
275 297 5.356751 GTGGCAATCAGGTAAACATACATGA 59.643 40.000 0.00 5.90 43.51 3.07
284 306 5.705441 AGGTAAACATACATGACAACTGTGG 59.295 40.000 0.00 0.00 0.00 4.17
359 382 7.229306 CCATATGTGGCAAGTAGTTAATCACAT 59.771 37.037 19.77 19.77 43.73 3.21
390 413 2.418692 TGGTTTGATTACACGCGACAT 58.581 42.857 15.93 0.00 0.00 3.06
436 459 8.718734 GTCAACTATAGTTAACCAAAACAGAGG 58.281 37.037 17.62 1.21 36.32 3.69
443 466 3.662759 AACCAAAACAGAGGGAGTTGA 57.337 42.857 0.00 0.00 0.00 3.18
457 480 5.079643 AGGGAGTTGACATGCTTTTACAAT 58.920 37.500 0.00 0.00 0.00 2.71
462 485 7.698130 GGAGTTGACATGCTTTTACAATCATAC 59.302 37.037 0.00 0.00 0.00 2.39
513 538 1.952296 CCCGCGAGTACCTAATGTAGT 59.048 52.381 8.23 0.00 35.75 2.73
519 544 3.488721 CGAGTACCTAATGTAGTTGCGCT 60.489 47.826 9.73 0.00 33.12 5.92
574 600 1.890894 CGGGATAGGGATGCGTAGG 59.109 63.158 0.00 0.00 0.00 3.18
631 660 2.151202 CACGTGTGGGCAATTCTACTT 58.849 47.619 7.58 0.00 0.00 2.24
678 708 2.277737 CCCCTGCTCATGCCACAT 59.722 61.111 0.00 0.00 38.71 3.21
680 710 0.111832 CCCCTGCTCATGCCACATAT 59.888 55.000 0.00 0.00 38.71 1.78
731 761 2.289195 ACGTGTGGTGGATATTGACGTT 60.289 45.455 0.00 0.00 35.16 3.99
831 864 1.836383 GTCTGACGAGAAACACACGT 58.164 50.000 0.00 0.00 46.99 4.49
835 868 1.828331 GACGAGAAACACACGTGCCC 61.828 60.000 17.22 0.11 44.71 5.36
917 965 0.615261 ACCTCCGTCCTTTCCTCCTC 60.615 60.000 0.00 0.00 0.00 3.71
922 970 0.032416 CGTCCTTTCCTCCTCCCCTA 60.032 60.000 0.00 0.00 0.00 3.53
970 1018 2.622962 CGGAAACTCCCAAACGGCC 61.623 63.158 0.00 0.00 31.13 6.13
1506 1554 2.583441 CGCCCAGGAGGTCTTCACA 61.583 63.158 0.00 0.00 38.26 3.58
1691 1739 4.082523 CTCCATGCACGACCCGGT 62.083 66.667 0.00 0.00 0.00 5.28
1877 2006 7.983484 ACAACGTTAATATGTAGGAAGGGTTAG 59.017 37.037 0.00 0.00 0.00 2.34
1924 2054 4.937620 TCTGTATGTTTGGCTGTGATTCTC 59.062 41.667 0.00 0.00 0.00 2.87
1925 2055 4.910195 TGTATGTTTGGCTGTGATTCTCT 58.090 39.130 0.00 0.00 0.00 3.10
1935 2065 6.061441 TGGCTGTGATTCTCTTCTTTGTAAA 58.939 36.000 0.00 0.00 0.00 2.01
1943 2076 8.299570 TGATTCTCTTCTTTGTAAAGGAAATGC 58.700 33.333 4.67 0.00 41.59 3.56
1988 2121 1.065600 TGCAAGGAAAACGCTGTGC 59.934 52.632 0.00 0.00 0.00 4.57
1994 2127 1.199624 GGAAAACGCTGTGCAAAGTG 58.800 50.000 16.08 16.08 0.00 3.16
2014 2315 4.067896 GTGTGGAATGTCTTGTGACTGAT 58.932 43.478 0.00 0.00 43.29 2.90
2026 2327 4.811555 TGTGACTGATGTTGTTTACTGC 57.188 40.909 0.00 0.00 0.00 4.40
2043 2344 3.012518 ACTGCATTGCATTAGGAGTGTC 58.987 45.455 12.53 0.00 38.13 3.67
2048 2349 4.787563 GCATTGCATTAGGAGTGTCAATCG 60.788 45.833 3.15 0.00 0.00 3.34
2051 2352 2.866762 GCATTAGGAGTGTCAATCGTCC 59.133 50.000 0.00 0.00 0.00 4.79
2151 2452 7.755591 TCATGAACAATGAAGAAGTAATCTGC 58.244 34.615 0.00 0.00 42.49 4.26
2188 2489 9.950680 TCATCTTCTTTTGATGTTTAGTTGAAC 57.049 29.630 0.00 0.00 41.30 3.18
2240 2601 1.734163 AACAGTGCCGGTACTATTGC 58.266 50.000 25.55 0.00 0.00 3.56
2262 2623 2.847959 TGTTCACATTGTGTGCACAG 57.152 45.000 22.40 11.29 46.41 3.66
2280 2641 4.250464 CACAGGTATCATTGTTACCGTGT 58.750 43.478 23.31 19.73 43.25 4.49
2281 2642 5.412640 CACAGGTATCATTGTTACCGTGTA 58.587 41.667 23.31 0.00 43.25 2.90
2282 2643 5.290158 CACAGGTATCATTGTTACCGTGTAC 59.710 44.000 23.31 0.00 43.25 2.90
2283 2644 5.186409 ACAGGTATCATTGTTACCGTGTACT 59.814 40.000 17.89 3.05 43.25 2.73
2284 2645 5.747197 CAGGTATCATTGTTACCGTGTACTC 59.253 44.000 15.15 0.00 43.25 2.59
2285 2646 5.045872 GGTATCATTGTTACCGTGTACTCC 58.954 45.833 7.92 0.00 30.46 3.85
2286 2647 3.598019 TCATTGTTACCGTGTACTCCC 57.402 47.619 0.00 0.00 0.00 4.30
2287 2648 3.167485 TCATTGTTACCGTGTACTCCCT 58.833 45.455 0.00 0.00 0.00 4.20
2288 2649 3.194116 TCATTGTTACCGTGTACTCCCTC 59.806 47.826 0.00 0.00 0.00 4.30
2289 2650 1.549203 TGTTACCGTGTACTCCCTCC 58.451 55.000 0.00 0.00 0.00 4.30
2290 2651 0.453390 GTTACCGTGTACTCCCTCCG 59.547 60.000 0.00 0.00 0.00 4.63
2291 2652 0.038166 TTACCGTGTACTCCCTCCGT 59.962 55.000 0.00 0.00 0.00 4.69
2292 2653 0.392998 TACCGTGTACTCCCTCCGTC 60.393 60.000 0.00 0.00 0.00 4.79
2293 2654 2.413142 CCGTGTACTCCCTCCGTCC 61.413 68.421 0.00 0.00 0.00 4.79
2294 2655 2.413142 CGTGTACTCCCTCCGTCCC 61.413 68.421 0.00 0.00 0.00 4.46
2295 2656 1.304713 GTGTACTCCCTCCGTCCCA 60.305 63.158 0.00 0.00 0.00 4.37
2296 2657 0.901580 GTGTACTCCCTCCGTCCCAA 60.902 60.000 0.00 0.00 0.00 4.12
2297 2658 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
2298 2659 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2299 2660 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2300 2661 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2301 2662 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2302 2663 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
2303 2664 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
2304 2665 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
2305 2666 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
2306 2667 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
2307 2668 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
2308 2669 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
2309 2670 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
2310 2671 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
2311 2672 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
2312 2673 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
2313 2674 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
2314 2675 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
2315 2676 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
2316 2677 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
2317 2678 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
2318 2679 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
2326 2687 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
2327 2688 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
2328 2689 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
2329 2690 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
2330 2691 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
2331 2692 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
2332 2693 9.828852 CTTAGATTTGTCTAGATACGGATGTAC 57.171 37.037 0.00 0.00 32.26 2.90
2333 2694 7.216973 AGATTTGTCTAGATACGGATGTACC 57.783 40.000 0.00 0.00 32.26 3.34
2334 2695 7.005296 AGATTTGTCTAGATACGGATGTACCT 58.995 38.462 0.00 0.00 36.31 3.08
2335 2696 8.162085 AGATTTGTCTAGATACGGATGTACCTA 58.838 37.037 0.00 0.00 36.31 3.08
2336 2697 8.701908 ATTTGTCTAGATACGGATGTACCTAA 57.298 34.615 0.00 0.00 36.31 2.69
2337 2698 8.701908 TTTGTCTAGATACGGATGTACCTAAT 57.298 34.615 0.00 0.00 36.31 1.73
2338 2699 9.797642 TTTGTCTAGATACGGATGTACCTAATA 57.202 33.333 0.00 0.00 36.31 0.98
2339 2700 8.783833 TGTCTAGATACGGATGTACCTAATAC 57.216 38.462 0.00 0.00 36.31 1.89
2340 2701 7.547019 TGTCTAGATACGGATGTACCTAATACG 59.453 40.741 0.00 0.00 36.47 3.06
2341 2702 7.761704 GTCTAGATACGGATGTACCTAATACGA 59.238 40.741 3.49 0.00 36.47 3.43
2342 2703 8.314021 TCTAGATACGGATGTACCTAATACGAA 58.686 37.037 3.49 0.00 36.47 3.85
2343 2704 7.750229 AGATACGGATGTACCTAATACGAAA 57.250 36.000 3.49 0.00 36.47 3.46
2344 2705 8.169977 AGATACGGATGTACCTAATACGAAAA 57.830 34.615 3.49 0.00 36.47 2.29
2345 2706 8.078596 AGATACGGATGTACCTAATACGAAAAC 58.921 37.037 3.49 0.00 36.47 2.43
2346 2707 5.036737 ACGGATGTACCTAATACGAAAACG 58.963 41.667 3.49 0.00 36.47 3.60
2347 2708 5.036737 CGGATGTACCTAATACGAAAACGT 58.963 41.667 0.00 0.00 36.47 3.99
2348 2709 5.052172 CGGATGTACCTAATACGAAAACGTG 60.052 44.000 5.54 0.00 36.47 4.49
2349 2710 6.035843 GGATGTACCTAATACGAAAACGTGA 58.964 40.000 5.54 0.00 36.47 4.35
2350 2711 6.020360 GGATGTACCTAATACGAAAACGTGAC 60.020 42.308 5.54 0.00 36.47 3.67
2351 2712 6.012658 TGTACCTAATACGAAAACGTGACT 57.987 37.500 5.54 0.00 36.47 3.41
2352 2713 6.446318 TGTACCTAATACGAAAACGTGACTT 58.554 36.000 5.54 0.31 36.47 3.01
2353 2714 5.834239 ACCTAATACGAAAACGTGACTTG 57.166 39.130 5.54 0.00 0.00 3.16
2354 2715 5.531634 ACCTAATACGAAAACGTGACTTGA 58.468 37.500 5.54 0.00 0.00 3.02
2355 2716 6.161381 ACCTAATACGAAAACGTGACTTGAT 58.839 36.000 5.54 0.00 0.00 2.57
2356 2717 7.315142 ACCTAATACGAAAACGTGACTTGATA 58.685 34.615 5.54 0.00 0.00 2.15
2357 2718 7.274250 ACCTAATACGAAAACGTGACTTGATAC 59.726 37.037 5.54 0.00 0.00 2.24
2358 2719 7.274033 CCTAATACGAAAACGTGACTTGATACA 59.726 37.037 5.54 0.00 0.00 2.29
2359 2720 7.591006 AATACGAAAACGTGACTTGATACAT 57.409 32.000 5.54 0.00 0.00 2.29
2360 2721 5.511088 ACGAAAACGTGACTTGATACATC 57.489 39.130 0.00 0.00 0.00 3.06
2361 2722 4.387862 ACGAAAACGTGACTTGATACATCC 59.612 41.667 0.00 0.00 0.00 3.51
2362 2723 4.490319 CGAAAACGTGACTTGATACATCCG 60.490 45.833 0.00 0.00 0.00 4.18
2363 2724 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
2364 2725 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
2365 2726 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
2366 2727 5.258456 ACGTGACTTGATACATCCGTATT 57.742 39.130 0.00 0.00 38.48 1.89
2367 2728 5.657474 ACGTGACTTGATACATCCGTATTT 58.343 37.500 0.00 0.00 38.48 1.40
2368 2729 6.798482 ACGTGACTTGATACATCCGTATTTA 58.202 36.000 0.00 0.00 38.48 1.40
2369 2730 6.916387 ACGTGACTTGATACATCCGTATTTAG 59.084 38.462 0.00 0.00 38.48 1.85
2370 2731 7.136772 CGTGACTTGATACATCCGTATTTAGA 58.863 38.462 0.00 0.00 38.48 2.10
2371 2732 7.113124 CGTGACTTGATACATCCGTATTTAGAC 59.887 40.741 0.00 0.00 38.48 2.59
2372 2733 7.919091 GTGACTTGATACATCCGTATTTAGACA 59.081 37.037 0.00 0.00 38.48 3.41
2373 2734 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
2374 2735 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
2375 2736 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
2382 2743 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
2383 2744 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
2385 2746 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
2386 2747 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
2394 2755 9.971922 AGACAAATCTAAGACAAGAATTTTTGG 57.028 29.630 12.83 0.00 31.65 3.28
2395 2756 9.965824 GACAAATCTAAGACAAGAATTTTTGGA 57.034 29.630 12.83 1.24 31.65 3.53
2396 2757 9.750125 ACAAATCTAAGACAAGAATTTTTGGAC 57.250 29.630 12.83 6.81 31.65 4.02
2397 2758 8.905702 CAAATCTAAGACAAGAATTTTTGGACG 58.094 33.333 12.83 0.00 32.32 4.79
2398 2759 6.554334 TCTAAGACAAGAATTTTTGGACGG 57.446 37.500 12.83 0.70 32.32 4.79
2399 2760 6.292923 TCTAAGACAAGAATTTTTGGACGGA 58.707 36.000 12.83 2.72 32.32 4.69
2400 2761 5.438761 AAGACAAGAATTTTTGGACGGAG 57.561 39.130 12.83 0.00 32.32 4.63
2401 2762 3.821033 AGACAAGAATTTTTGGACGGAGG 59.179 43.478 12.83 0.00 32.32 4.30
2402 2763 2.890945 ACAAGAATTTTTGGACGGAGGG 59.109 45.455 12.83 0.00 32.32 4.30
2403 2764 3.153919 CAAGAATTTTTGGACGGAGGGA 58.846 45.455 0.76 0.00 0.00 4.20
2404 2765 3.073274 AGAATTTTTGGACGGAGGGAG 57.927 47.619 0.00 0.00 0.00 4.30
2420 2781 4.101741 GGAGGGAGTATATTGCTTGTGTCT 59.898 45.833 0.00 0.00 0.00 3.41
2478 2880 6.768483 TGAACAGACCTTTACATCAGATTGA 58.232 36.000 0.00 0.00 0.00 2.57
2669 3090 3.733224 CGTTATGCTAGTCTCTGTGCATC 59.267 47.826 12.39 0.00 43.86 3.91
2827 3248 5.516339 GCAACGGTCATAAATCTTTGAATGG 59.484 40.000 0.00 0.00 0.00 3.16
2879 3300 7.643569 ACAATCATGCACTAATTATTGGACA 57.356 32.000 5.12 0.00 29.27 4.02
2923 3344 3.434453 CCCTTGCCCCAACTCGATAAATA 60.434 47.826 0.00 0.00 0.00 1.40
3023 3444 1.681793 GTGCCTCTAATAGCCGAGACA 59.318 52.381 0.00 0.00 0.00 3.41
3031 3457 3.802948 AATAGCCGAGACACTAACTGG 57.197 47.619 0.00 0.00 0.00 4.00
3367 3803 1.546029 CTGCCAAAAAGGGTCTAAGGC 59.454 52.381 0.00 0.00 40.93 4.35
3427 3866 9.177304 GCTAGTTTTATTTGGTATATTTTCCGC 57.823 33.333 0.00 0.00 0.00 5.54
3429 3868 8.920509 AGTTTTATTTGGTATATTTTCCGCAC 57.079 30.769 0.00 0.00 0.00 5.34
3430 3869 8.745590 AGTTTTATTTGGTATATTTTCCGCACT 58.254 29.630 0.00 0.00 0.00 4.40
3431 3870 8.803799 GTTTTATTTGGTATATTTTCCGCACTG 58.196 33.333 0.00 0.00 0.00 3.66
3493 3939 6.849588 ACAAATCTTTTGGCATTCTTCAAC 57.150 33.333 5.11 0.00 0.00 3.18
3553 3999 5.064325 GGCGAGTGTACTTGTAAATTTAGGG 59.936 44.000 0.00 0.00 0.00 3.53
3554 4000 5.064325 GCGAGTGTACTTGTAAATTTAGGGG 59.936 44.000 0.00 0.00 0.00 4.79
3616 4071 6.825721 AGGTCAATAAGAAATTGCAGACTAGG 59.174 38.462 0.00 0.00 0.00 3.02
3622 4077 4.327680 AGAAATTGCAGACTAGGTGAACC 58.672 43.478 0.00 0.00 0.00 3.62
3645 4107 4.693566 CGAAACCACTTAATTGCTAGGTCA 59.306 41.667 0.00 0.00 0.00 4.02
3668 4130 5.922544 CACCAAGAAGGCAAGAAAATACTTG 59.077 40.000 0.00 0.00 46.69 3.16
3809 4271 3.907894 TCCCGCACAAACTTTAATCAC 57.092 42.857 0.00 0.00 0.00 3.06
3822 4284 8.915654 CAAACTTTAATCACTCATAACTTTGCC 58.084 33.333 0.00 0.00 0.00 4.52
3863 4325 1.075374 TGTCAATCACCTTCCCTTGGG 59.925 52.381 0.00 0.00 0.00 4.12
3945 4407 7.872163 TTGCATTGTTTCTTTAGTTATGCAG 57.128 32.000 0.00 0.00 45.02 4.41
3948 4410 6.034256 GCATTGTTTCTTTAGTTATGCAGCAG 59.966 38.462 0.00 0.00 37.45 4.24
4010 4480 2.311243 AGTTACTACTCCCTCCGTTCCT 59.689 50.000 0.00 0.00 0.00 3.36
4016 4486 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
4017 4487 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
4020 4490 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
4022 4492 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4023 4493 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4024 4494 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4025 4495 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
4026 4496 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
4027 4497 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
4028 4498 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
4029 4499 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
4042 4512 9.573166 TTTGTCTTTCTAGAGATTTCAAATGGA 57.427 29.630 0.00 0.00 0.00 3.41
4043 4513 8.553459 TGTCTTTCTAGAGATTTCAAATGGAC 57.447 34.615 0.00 0.00 0.00 4.02
4044 4514 8.378565 TGTCTTTCTAGAGATTTCAAATGGACT 58.621 33.333 0.00 0.00 0.00 3.85
4045 4515 9.877178 GTCTTTCTAGAGATTTCAAATGGACTA 57.123 33.333 0.00 0.00 0.00 2.59
4046 4516 9.877178 TCTTTCTAGAGATTTCAAATGGACTAC 57.123 33.333 0.00 0.00 0.00 2.73
4047 4517 9.103861 CTTTCTAGAGATTTCAAATGGACTACC 57.896 37.037 0.00 0.00 0.00 3.18
4060 4530 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
4062 4532 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
4063 4533 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
4064 4534 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
4065 4535 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
4066 4536 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
4067 4537 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
4068 4538 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
4069 4539 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
4071 4541 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
4100 4570 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
4101 4571 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
4102 4572 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
4103 4573 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4104 4574 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4105 4575 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
4106 4576 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4107 4577 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4108 4578 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4109 4579 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
4110 4580 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4111 4581 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4112 4582 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
4113 4583 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
4114 4584 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
4115 4585 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
4116 4586 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
4117 4587 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
4118 4588 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
4119 4589 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
4120 4590 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
4121 4591 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
4122 4592 5.466819 TCCGTATGTAGTCACTTGTTGAAG 58.533 41.667 0.00 0.00 35.39 3.02
4123 4593 5.010314 TCCGTATGTAGTCACTTGTTGAAGT 59.990 40.000 0.00 0.00 43.63 3.01
4124 4594 5.345202 CCGTATGTAGTCACTTGTTGAAGTC 59.655 44.000 0.00 0.00 40.68 3.01
4125 4595 6.150318 CGTATGTAGTCACTTGTTGAAGTCT 58.850 40.000 0.00 0.00 40.68 3.24
4126 4596 6.305877 CGTATGTAGTCACTTGTTGAAGTCTC 59.694 42.308 0.00 0.00 40.68 3.36
4127 4597 5.854010 TGTAGTCACTTGTTGAAGTCTCT 57.146 39.130 0.00 0.00 40.68 3.10
4128 4598 6.954487 TGTAGTCACTTGTTGAAGTCTCTA 57.046 37.500 0.00 0.00 40.68 2.43
4129 4599 6.971602 TGTAGTCACTTGTTGAAGTCTCTAG 58.028 40.000 0.00 0.00 40.68 2.43
4130 4600 6.771267 TGTAGTCACTTGTTGAAGTCTCTAGA 59.229 38.462 0.00 0.00 40.68 2.43
4131 4601 6.716934 AGTCACTTGTTGAAGTCTCTAGAA 57.283 37.500 0.00 0.00 40.68 2.10
4134 4604 7.068839 AGTCACTTGTTGAAGTCTCTAGAAAGA 59.931 37.037 0.00 0.00 40.68 2.52
4137 4607 7.492669 CACTTGTTGAAGTCTCTAGAAAGACAA 59.507 37.037 13.05 7.65 46.65 3.18
4138 4608 8.041323 ACTTGTTGAAGTCTCTAGAAAGACAAA 58.959 33.333 13.05 3.88 46.65 2.83
4157 4627 5.434408 ACAAATATTTAGGAACGGAGGGAC 58.566 41.667 0.00 0.00 0.00 4.46
4158 4628 4.701651 AATATTTAGGAACGGAGGGACC 57.298 45.455 0.00 0.00 0.00 4.46
4161 4631 0.115745 TTAGGAACGGAGGGACCAGT 59.884 55.000 0.00 0.00 38.90 4.00
4163 4633 0.115745 AGGAACGGAGGGACCAGTTA 59.884 55.000 0.00 0.00 36.27 2.24
4164 4634 0.248565 GGAACGGAGGGACCAGTTAC 59.751 60.000 0.00 0.00 36.27 2.50
4165 4635 1.264295 GAACGGAGGGACCAGTTACT 58.736 55.000 0.00 0.00 36.27 2.24
4166 4636 2.450476 GAACGGAGGGACCAGTTACTA 58.550 52.381 0.00 0.00 36.27 1.82
4167 4637 2.140839 ACGGAGGGACCAGTTACTAG 57.859 55.000 0.00 0.00 38.90 2.57
4168 4638 1.637553 ACGGAGGGACCAGTTACTAGA 59.362 52.381 0.00 0.00 38.90 2.43
4169 4639 2.244252 ACGGAGGGACCAGTTACTAGAT 59.756 50.000 0.00 0.00 38.90 1.98
4170 4640 2.623889 CGGAGGGACCAGTTACTAGATG 59.376 54.545 0.00 0.00 38.90 2.90
4171 4641 3.644335 GGAGGGACCAGTTACTAGATGT 58.356 50.000 0.00 0.00 38.79 3.06
4172 4642 4.688045 CGGAGGGACCAGTTACTAGATGTA 60.688 50.000 0.00 0.00 38.90 2.29
4173 4643 5.395611 GGAGGGACCAGTTACTAGATGTAT 58.604 45.833 0.00 0.00 38.79 2.29
4277 4848 8.103305 TCTCTTGCTGTTTGGATAACTATTTCT 58.897 33.333 0.00 0.00 0.00 2.52
4445 5016 8.747538 AAGAACAGTTTATGGTTGTCTAAAGT 57.252 30.769 0.00 0.00 0.00 2.66
4609 5181 3.502595 GCCCTCTAGGTTTCTTGTTGTTC 59.497 47.826 0.00 0.00 38.26 3.18
4611 5183 4.445735 CCCTCTAGGTTTCTTGTTGTTCCA 60.446 45.833 0.00 0.00 0.00 3.53
4816 5392 5.162980 TGTCTATGAGCCCTATGTCTTCCTA 60.163 44.000 0.00 0.00 0.00 2.94
4835 5434 5.787380 TCCTATTCATCCATCAGACATTCG 58.213 41.667 0.00 0.00 0.00 3.34
4840 5439 4.309933 TCATCCATCAGACATTCGCATAC 58.690 43.478 0.00 0.00 0.00 2.39
5002 5720 5.104374 TCTTTTACGTAGCGGTAAAGATGG 58.896 41.667 12.98 0.00 41.76 3.51
5003 5721 3.441496 TTACGTAGCGGTAAAGATGGG 57.559 47.619 0.00 0.00 29.86 4.00
5093 5811 0.394352 AATGTAGGGAAAGGCTGCGG 60.394 55.000 0.00 0.00 0.00 5.69
5170 5888 3.128375 CACCGGGCTGCACTTTTT 58.872 55.556 6.32 0.00 0.00 1.94
5258 5978 5.439721 AGTTAATGACATCTTGCTGCCATA 58.560 37.500 0.00 0.00 0.00 2.74
5364 6084 3.126001 TGGAAGCTTTTGTGATCTCGT 57.874 42.857 0.00 0.00 0.00 4.18
5700 6445 5.310451 TGGTGTTAAGGTAAGTTTGCCTAG 58.690 41.667 1.81 0.00 42.81 3.02
5703 6449 5.993441 GTGTTAAGGTAAGTTTGCCTAGTCA 59.007 40.000 1.81 0.30 42.81 3.41
5845 6594 2.346847 GCAGCACTAGTCAAATCAGACG 59.653 50.000 0.00 0.00 43.24 4.18
6023 6856 9.607988 TTATCTTTCGTATCAATTAGAAAGGCA 57.392 29.630 14.30 3.27 45.55 4.75
6129 6962 7.495934 GCACTTGGTGATACTTACAAGATGTAT 59.504 37.037 9.90 0.00 42.07 2.29
6131 6964 9.959721 ACTTGGTGATACTTACAAGATGTATTT 57.040 29.630 9.90 0.00 42.07 1.40
6154 6987 7.559590 TTTAGAAGCATAGATTCTTCCAAGC 57.440 36.000 2.67 0.00 39.15 4.01
6155 6988 4.459330 AGAAGCATAGATTCTTCCAAGCC 58.541 43.478 0.00 0.00 34.46 4.35
6158 6991 4.459330 AGCATAGATTCTTCCAAGCCTTC 58.541 43.478 0.00 0.00 0.00 3.46
6160 6993 4.886489 GCATAGATTCTTCCAAGCCTTCTT 59.114 41.667 0.00 0.00 0.00 2.52
6182 7015 8.877864 TCTTGGCCAATGTAATATTTATAGGG 57.122 34.615 20.85 0.45 0.00 3.53
6183 7016 8.452868 TCTTGGCCAATGTAATATTTATAGGGT 58.547 33.333 20.85 0.00 0.00 4.34
6219 7079 5.359292 GCATAGATTCTTCCAAGCCTTCTTT 59.641 40.000 0.00 0.00 0.00 2.52
6220 7080 6.543831 GCATAGATTCTTCCAAGCCTTCTTTA 59.456 38.462 0.00 0.00 0.00 1.85
6229 7145 6.773976 TCCAAGCCTTCTTTACCAATATTG 57.226 37.500 8.58 8.58 0.00 1.90
6259 7175 5.766150 TGTATGTGTCCCTTGAACTTTTG 57.234 39.130 0.00 0.00 0.00 2.44
6280 7196 6.875948 TTGAAGTTTGTATTCTTGCTGCTA 57.124 33.333 0.00 0.00 0.00 3.49
6301 7217 7.874940 TGCTAGGCATAAAGTATTTGCATTAG 58.125 34.615 0.00 0.00 33.79 1.73
6751 7669 9.678260 ACTATAACAGATCTTGCAGAAATTCTT 57.322 29.630 0.00 0.00 0.00 2.52
6784 7702 3.260380 TCTCTTCTTCTCTTGCCTCAAGG 59.740 47.826 6.71 0.00 41.33 3.61
6817 7735 7.375280 CGAAGTTGCATTGATGAATTGACTATC 59.625 37.037 0.00 0.00 0.00 2.08
6835 7753 5.186198 ACTATCCCATTGTTTTCCTCTTCG 58.814 41.667 0.00 0.00 0.00 3.79
7217 8135 3.054875 AGCTGTCTCCTGCATGTGATTTA 60.055 43.478 0.00 0.00 37.95 1.40
7292 8210 0.883833 CATCTGCCAAGTTGGACCAC 59.116 55.000 26.52 8.18 40.96 4.16
7307 8232 3.010920 TGGACCACTACAGCCTAAGTCTA 59.989 47.826 0.00 0.00 0.00 2.59
7309 8234 4.278919 GGACCACTACAGCCTAAGTCTATC 59.721 50.000 0.00 0.00 0.00 2.08
7377 8302 4.039730 AGGCTGATGCTGGTATAGTTACAG 59.960 45.833 0.00 0.00 39.59 2.74
7473 8403 1.876497 ATGCGACATGTGGGGTTTGC 61.876 55.000 1.15 0.00 0.00 3.68
7487 8417 4.018870 TGGGGTTTGCTAATGACAGTGATA 60.019 41.667 0.00 0.00 0.00 2.15
7521 8451 9.764363 TTAAGACGATAACAATGATCTATGCTT 57.236 29.630 0.00 0.00 0.00 3.91
7522 8452 7.649370 AGACGATAACAATGATCTATGCTTG 57.351 36.000 0.00 0.00 0.00 4.01
7524 8454 8.360390 AGACGATAACAATGATCTATGCTTGTA 58.640 33.333 0.00 0.00 31.88 2.41
7525 8455 8.299262 ACGATAACAATGATCTATGCTTGTAC 57.701 34.615 0.00 0.00 31.88 2.90
7526 8456 8.144478 ACGATAACAATGATCTATGCTTGTACT 58.856 33.333 0.00 0.00 31.88 2.73
7527 8457 8.982685 CGATAACAATGATCTATGCTTGTACTT 58.017 33.333 0.00 0.00 31.88 2.24
7529 8459 7.928307 AACAATGATCTATGCTTGTACTTGT 57.072 32.000 0.00 0.00 31.88 3.16
7530 8460 7.928307 ACAATGATCTATGCTTGTACTTGTT 57.072 32.000 0.00 0.00 30.43 2.83
7531 8461 8.340618 ACAATGATCTATGCTTGTACTTGTTT 57.659 30.769 0.00 0.00 30.43 2.83
7563 8493 2.159170 TGGCTTGCACTTGTTTAACCAC 60.159 45.455 0.00 0.00 0.00 4.16
7570 8500 4.688879 TGCACTTGTTTAACCACGATCTAG 59.311 41.667 0.00 0.00 0.00 2.43
7575 8505 4.501071 TGTTTAACCACGATCTAGGCTTC 58.499 43.478 0.00 0.00 0.00 3.86
7593 8523 5.047660 AGGCTTCATAGCTATCCTAAACTCG 60.048 44.000 9.43 0.00 46.90 4.18
7696 8626 5.338708 CCAACCAGATCATCAGTAGTCCTTT 60.339 44.000 0.00 0.00 0.00 3.11
7702 8632 6.756074 CAGATCATCAGTAGTCCTTTCTTGAC 59.244 42.308 0.00 0.00 0.00 3.18
7703 8633 6.438741 AGATCATCAGTAGTCCTTTCTTGACA 59.561 38.462 0.00 0.00 35.15 3.58
7712 8642 4.518211 AGTCCTTTCTTGACATGCTCTTTG 59.482 41.667 0.00 0.00 35.15 2.77
7721 8651 4.935702 TGACATGCTCTTTGGAGTTTTTG 58.064 39.130 0.00 0.00 41.38 2.44
7817 8762 1.612676 GTGGTTGGTTGGTCTTACCC 58.387 55.000 0.00 0.00 37.50 3.69
7848 8793 5.407084 CGATGGTTAATGTACACAAGTGACA 59.593 40.000 7.28 7.45 0.00 3.58
7888 8833 0.463295 CTGGGATGCTGCGTGAATCT 60.463 55.000 0.00 0.00 0.00 2.40
7933 8878 6.042093 GGATCCTATTGACTATTGACTGACCA 59.958 42.308 3.84 0.00 0.00 4.02
7969 8914 1.259609 TTGCAGGCATCTTTGGGAAG 58.740 50.000 0.00 0.00 0.00 3.46
8053 8998 1.606994 GGTATGGTCAAGCACACACGA 60.607 52.381 0.00 0.00 0.00 4.35
8111 9056 4.622313 ACATGCAACATTTTGTAATGCTCG 59.378 37.500 0.00 1.16 44.05 5.03
8342 9304 2.667969 GGACGTAATACCACACCGTTTC 59.332 50.000 0.00 0.00 0.00 2.78
8410 9375 6.020201 GCTGCACGTTTTTGTTTATAGTGTTT 60.020 34.615 0.00 0.00 0.00 2.83
8499 9466 6.457392 CGTTGAGCATTGCTGTATTCTATTGT 60.457 38.462 17.51 0.00 39.88 2.71
8502 9469 4.641541 AGCATTGCTGTATTCTATTGTGCA 59.358 37.500 11.09 0.00 37.57 4.57
8503 9470 5.301045 AGCATTGCTGTATTCTATTGTGCAT 59.699 36.000 11.09 0.00 37.57 3.96
8520 9487 3.826236 GCATATGCAGTTATGGAGCAG 57.174 47.619 22.84 0.00 42.14 4.24
8521 9488 3.405831 GCATATGCAGTTATGGAGCAGA 58.594 45.455 22.84 0.00 42.14 4.26
8522 9489 3.817084 GCATATGCAGTTATGGAGCAGAA 59.183 43.478 22.84 0.00 42.14 3.02
8523 9490 4.083431 GCATATGCAGTTATGGAGCAGAAG 60.083 45.833 22.84 0.00 42.14 2.85
8524 9491 3.641434 ATGCAGTTATGGAGCAGAAGT 57.359 42.857 0.00 0.00 42.14 3.01
8525 9492 3.423539 TGCAGTTATGGAGCAGAAGTT 57.576 42.857 0.00 0.00 33.75 2.66
8526 9493 3.754965 TGCAGTTATGGAGCAGAAGTTT 58.245 40.909 0.00 0.00 33.75 2.66
8527 9494 3.753272 TGCAGTTATGGAGCAGAAGTTTC 59.247 43.478 0.00 0.00 33.75 2.78
8528 9495 4.006319 GCAGTTATGGAGCAGAAGTTTCT 58.994 43.478 0.00 0.00 38.25 2.52
8529 9496 4.457257 GCAGTTATGGAGCAGAAGTTTCTT 59.543 41.667 0.00 0.00 34.74 2.52
8544 9511 7.167136 CAGAAGTTTCTTGAGAAAGAAATGTGC 59.833 37.037 14.70 6.55 46.61 4.57
8559 9526 2.357034 TGCGAGGTCCGTTTCAGC 60.357 61.111 0.00 0.00 41.15 4.26
8570 9538 1.284982 CGTTTCAGCCGACTGTCAGG 61.285 60.000 8.73 10.86 44.77 3.86
8593 9561 8.096414 CAGGGTATCAATCAACCAAATCTTTTT 58.904 33.333 0.00 0.00 37.51 1.94
8611 9579 0.901827 TTGCTTGCATCGTCCCTCTA 59.098 50.000 0.00 0.00 0.00 2.43
8612 9580 0.461548 TGCTTGCATCGTCCCTCTAG 59.538 55.000 0.00 0.00 0.00 2.43
8647 9784 3.593096 TGATCATCTCAGCAACTGTGTC 58.407 45.455 0.00 0.00 32.61 3.67
8650 9787 1.463831 CATCTCAGCAACTGTGTCTGC 59.536 52.381 5.10 0.53 38.91 4.26
8651 9788 0.250038 TCTCAGCAACTGTGTCTGCC 60.250 55.000 0.00 0.00 39.47 4.85
8697 9840 9.198837 CGTTGCTATTACTTTAAATTTGGGTTT 57.801 29.630 0.00 0.00 0.00 3.27
8741 9896 1.563111 CGGCGCCGTATTTTTCTCTA 58.437 50.000 39.71 0.00 34.35 2.43
8743 9898 1.260825 GGCGCCGTATTTTTCTCTAGC 59.739 52.381 12.58 0.00 0.00 3.42
8749 9904 4.201822 GCCGTATTTTTCTCTAGCAGTTGG 60.202 45.833 0.00 0.00 0.00 3.77
8752 9907 5.292101 CGTATTTTTCTCTAGCAGTTGGGAG 59.708 44.000 0.00 0.00 0.00 4.30
8753 9908 3.703001 TTTTCTCTAGCAGTTGGGAGG 57.297 47.619 0.00 0.00 0.00 4.30
8754 9909 2.623418 TTCTCTAGCAGTTGGGAGGA 57.377 50.000 0.00 0.00 0.00 3.71
8758 9913 1.359474 TCTAGCAGTTGGGAGGAGAGT 59.641 52.381 0.00 0.00 0.00 3.24
8839 10004 5.530915 TGAGTTGCTAGTTTATTTGCACAGT 59.469 36.000 0.00 0.00 35.01 3.55
8840 10005 6.039270 TGAGTTGCTAGTTTATTTGCACAGTT 59.961 34.615 0.00 0.00 35.01 3.16
8899 10065 3.381136 CCCGCCACCAAACATGGG 61.381 66.667 0.00 0.00 37.73 4.00
8919 10085 2.416162 GGAAACCGCTGTGTTTTTGTCA 60.416 45.455 0.00 0.00 38.51 3.58
8954 10132 5.751243 TCTTCTTCCAAACGAAAAAGGAG 57.249 39.130 0.00 0.00 30.63 3.69
9039 10217 2.281208 TGGCACGGCAACACTACC 60.281 61.111 0.00 0.00 0.00 3.18
9195 10741 2.126071 GCAGACAGCTACGGCGAA 60.126 61.111 16.62 0.00 44.37 4.70
9219 10770 3.187637 CGAAAGCCGGTATGTTCTTTTCA 59.812 43.478 1.90 0.00 33.91 2.69
9225 10776 3.063452 CCGGTATGTTCTTTTCATGTCCG 59.937 47.826 0.00 12.96 40.20 4.79
9433 11108 1.071814 GCCGGGTGTCAGTAAACCA 59.928 57.895 2.18 0.00 38.27 3.67
9477 11155 2.090524 GTGTACCGTGTACCGCAGC 61.091 63.158 10.45 0.00 34.38 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.606401 CTCTCCAACGCCCACACATT 60.606 55.000 0.00 0.00 0.00 2.71
1 2 1.003355 CTCTCCAACGCCCACACAT 60.003 57.895 0.00 0.00 0.00 3.21
86 87 3.181479 GCGTGGACTAGGTGATGATTGTA 60.181 47.826 0.00 0.00 0.00 2.41
91 92 1.807226 CGCGTGGACTAGGTGATGA 59.193 57.895 0.00 0.00 0.00 2.92
168 169 0.787787 TTGTCATGTACGCGCAACTC 59.212 50.000 5.73 0.00 0.00 3.01
193 215 7.688167 CGAATCATAGTTGTCATGTGTGTTTAC 59.312 37.037 0.00 0.00 0.00 2.01
247 269 3.945346 TGTTTACCTGATTGCCACGTAT 58.055 40.909 0.00 0.00 0.00 3.06
359 382 6.308524 CGTGTAATCAAACCATAGTTGTCGTA 59.691 38.462 0.00 0.00 35.97 3.43
436 459 6.012658 TGATTGTAAAAGCATGTCAACTCC 57.987 37.500 0.00 0.00 0.00 3.85
443 466 6.071447 TGGCAAGTATGATTGTAAAAGCATGT 60.071 34.615 6.64 0.00 32.56 3.21
457 480 1.072173 CATCCGGGATGGCAAGTATGA 59.928 52.381 26.20 0.00 36.51 2.15
462 485 1.753848 TTGCATCCGGGATGGCAAG 60.754 57.895 32.28 12.25 40.10 4.01
513 538 2.048597 CCACACGTCCTAGCGCAA 60.049 61.111 11.47 0.00 34.88 4.85
519 544 2.912771 CAAATATGCCCACACGTCCTA 58.087 47.619 0.00 0.00 0.00 2.94
569 595 1.005394 ACGCCCAACAAGTCCTACG 60.005 57.895 0.00 0.00 0.00 3.51
574 600 3.030652 CCACACGCCCAACAAGTC 58.969 61.111 0.00 0.00 0.00 3.01
631 660 0.322098 CGGGCTATGTGTGGGTGAAA 60.322 55.000 0.00 0.00 0.00 2.69
678 708 1.029408 GCATTCGCCCACACACCATA 61.029 55.000 0.00 0.00 0.00 2.74
680 710 2.983030 GCATTCGCCCACACACCA 60.983 61.111 0.00 0.00 0.00 4.17
769 799 6.370166 TCAAAACCCATTTTCTCAACAACAAC 59.630 34.615 0.00 0.00 35.79 3.32
773 803 5.115480 GCTCAAAACCCATTTTCTCAACAA 58.885 37.500 0.00 0.00 35.79 2.83
774 804 4.161189 TGCTCAAAACCCATTTTCTCAACA 59.839 37.500 0.00 0.00 35.79 3.33
776 806 4.648762 TCTGCTCAAAACCCATTTTCTCAA 59.351 37.500 0.00 0.00 35.79 3.02
777 807 4.214310 TCTGCTCAAAACCCATTTTCTCA 58.786 39.130 0.00 0.00 35.79 3.27
778 808 4.853924 TCTGCTCAAAACCCATTTTCTC 57.146 40.909 0.00 0.00 35.79 2.87
779 809 4.834496 TCATCTGCTCAAAACCCATTTTCT 59.166 37.500 0.00 0.00 35.79 2.52
780 810 5.138125 TCATCTGCTCAAAACCCATTTTC 57.862 39.130 0.00 0.00 35.79 2.29
781 811 5.549742 TTCATCTGCTCAAAACCCATTTT 57.450 34.783 0.00 0.00 38.61 1.82
782 812 5.750352 ATTCATCTGCTCAAAACCCATTT 57.250 34.783 0.00 0.00 0.00 2.32
783 813 5.337813 GGAATTCATCTGCTCAAAACCCATT 60.338 40.000 7.93 0.00 0.00 3.16
784 814 4.161001 GGAATTCATCTGCTCAAAACCCAT 59.839 41.667 7.93 0.00 0.00 4.00
785 815 3.511146 GGAATTCATCTGCTCAAAACCCA 59.489 43.478 7.93 0.00 0.00 4.51
786 816 3.118992 GGGAATTCATCTGCTCAAAACCC 60.119 47.826 7.93 0.00 0.00 4.11
831 864 2.288025 GGTCCAGTACTTCGGGGCA 61.288 63.158 4.86 0.00 37.74 5.36
835 868 2.890371 CCCGGTCCAGTACTTCGG 59.110 66.667 0.00 13.59 40.32 4.30
970 1018 1.599797 GTGAGTCCGGTGGGGTTTG 60.600 63.158 0.00 0.00 37.00 2.93
1049 1097 1.167851 CCTCGGCATGCTTCTGAAAA 58.832 50.000 18.92 0.00 0.00 2.29
1050 1098 1.308069 GCCTCGGCATGCTTCTGAAA 61.308 55.000 18.92 0.00 41.49 2.69
1896 2026 5.316167 TCACAGCCAAACATACAGAAGAAT 58.684 37.500 0.00 0.00 0.00 2.40
1924 2054 6.152379 GTCCAGCATTTCCTTTACAAAGAAG 58.848 40.000 3.25 0.00 38.28 2.85
1925 2055 5.010617 GGTCCAGCATTTCCTTTACAAAGAA 59.989 40.000 3.25 0.00 38.28 2.52
1935 2065 1.005215 CTCCAAGGTCCAGCATTTCCT 59.995 52.381 0.00 0.00 0.00 3.36
1943 2076 5.839063 TCTTACCATATACTCCAAGGTCCAG 59.161 44.000 0.00 0.00 33.91 3.86
1988 2121 4.601019 GTCACAAGACATTCCACACTTTG 58.399 43.478 0.00 0.00 44.34 2.77
2014 2315 5.242615 TCCTAATGCAATGCAGTAAACAACA 59.757 36.000 16.22 0.00 43.65 3.33
2026 2327 4.333649 ACGATTGACACTCCTAATGCAATG 59.666 41.667 0.00 0.00 29.71 2.82
2043 2344 5.269505 AGAGATAGTTTGGAGGACGATTG 57.730 43.478 0.00 0.00 0.00 2.67
2048 2349 6.043854 ACTTCAAGAGATAGTTTGGAGGAC 57.956 41.667 0.00 0.00 34.79 3.85
2051 2352 8.260818 TCCATAACTTCAAGAGATAGTTTGGAG 58.739 37.037 0.00 0.00 35.99 3.86
2143 2444 2.095768 TGAAACAAGCAGCGCAGATTAC 60.096 45.455 11.47 0.00 0.00 1.89
2150 2451 1.198637 AGAAGATGAAACAAGCAGCGC 59.801 47.619 0.00 0.00 0.00 5.92
2151 2452 3.549299 AAGAAGATGAAACAAGCAGCG 57.451 42.857 0.00 0.00 0.00 5.18
2183 2484 9.814899 ATCAACTAAATGACAAACAATGTTCAA 57.185 25.926 0.00 0.00 44.12 2.69
2188 2489 9.681692 TCTGAATCAACTAAATGACAAACAATG 57.318 29.630 0.00 0.00 30.82 2.82
2262 2623 5.045872 GGAGTACACGGTAACAATGATACC 58.954 45.833 9.37 9.37 39.57 2.73
2280 2641 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2281 2642 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
2282 2643 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
2283 2644 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
2284 2645 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
2285 2646 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
2286 2647 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
2287 2648 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
2288 2649 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
2289 2650 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
2290 2651 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
2291 2652 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
2292 2653 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
2300 2661 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
2301 2662 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
2302 2663 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
2303 2664 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
2304 2665 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
2305 2666 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
2306 2667 9.828852 GTACATCCGTATCTAGACAAATCTAAG 57.171 37.037 0.00 0.00 36.98 2.18
2307 2668 8.790718 GGTACATCCGTATCTAGACAAATCTAA 58.209 37.037 0.00 0.00 36.98 2.10
2308 2669 8.162085 AGGTACATCCGTATCTAGACAAATCTA 58.838 37.037 0.00 0.00 37.29 1.98
2309 2670 7.005296 AGGTACATCCGTATCTAGACAAATCT 58.995 38.462 0.00 0.00 37.29 2.40
2310 2671 7.216973 AGGTACATCCGTATCTAGACAAATC 57.783 40.000 0.00 0.00 37.29 2.17
2311 2672 8.701908 TTAGGTACATCCGTATCTAGACAAAT 57.298 34.615 0.00 0.00 41.33 2.32
2312 2673 8.701908 ATTAGGTACATCCGTATCTAGACAAA 57.298 34.615 0.00 0.00 41.33 2.83
2313 2674 9.224267 GTATTAGGTACATCCGTATCTAGACAA 57.776 37.037 0.00 0.00 41.33 3.18
2314 2675 7.547019 CGTATTAGGTACATCCGTATCTAGACA 59.453 40.741 0.00 0.00 41.33 3.41
2315 2676 7.761704 TCGTATTAGGTACATCCGTATCTAGAC 59.238 40.741 0.00 0.00 41.33 2.59
2316 2677 7.840931 TCGTATTAGGTACATCCGTATCTAGA 58.159 38.462 0.00 0.00 41.33 2.43
2317 2678 8.484641 TTCGTATTAGGTACATCCGTATCTAG 57.515 38.462 0.00 0.00 41.33 2.43
2318 2679 8.846943 TTTCGTATTAGGTACATCCGTATCTA 57.153 34.615 0.00 0.00 39.80 1.98
2319 2680 7.750229 TTTCGTATTAGGTACATCCGTATCT 57.250 36.000 0.00 0.00 41.99 1.98
2320 2681 7.059945 CGTTTTCGTATTAGGTACATCCGTATC 59.940 40.741 0.00 0.00 38.78 2.24
2321 2682 6.857964 CGTTTTCGTATTAGGTACATCCGTAT 59.142 38.462 0.00 0.00 38.78 3.06
2322 2683 6.198687 CGTTTTCGTATTAGGTACATCCGTA 58.801 40.000 0.00 0.00 38.78 4.02
2323 2684 5.036737 CGTTTTCGTATTAGGTACATCCGT 58.963 41.667 0.00 0.00 38.78 4.69
2324 2685 5.550701 CGTTTTCGTATTAGGTACATCCG 57.449 43.478 0.00 0.00 38.78 4.18
2339 2700 8.825668 ATACGGATGTATCAAGTCACGTTTTCG 61.826 40.741 0.00 0.00 42.29 3.46
2340 2701 4.387862 ACGGATGTATCAAGTCACGTTTTC 59.612 41.667 0.00 0.00 0.00 2.29
2341 2702 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
2342 2703 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
2343 2704 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
2344 2705 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
2345 2706 7.113124 GTCTAAATACGGATGTATCAAGTCACG 59.887 40.741 0.00 0.00 40.42 4.35
2346 2707 7.919091 TGTCTAAATACGGATGTATCAAGTCAC 59.081 37.037 0.00 0.00 40.42 3.67
2347 2708 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
2348 2709 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
2349 2710 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
2356 2717 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
2357 2718 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
2359 2720 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
2360 2721 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
2368 2729 9.971922 CCAAAAATTCTTGTCTTAGATTTGTCT 57.028 29.630 0.00 0.00 0.00 3.41
2369 2730 9.965824 TCCAAAAATTCTTGTCTTAGATTTGTC 57.034 29.630 0.00 0.00 0.00 3.18
2370 2731 9.750125 GTCCAAAAATTCTTGTCTTAGATTTGT 57.250 29.630 0.00 0.00 0.00 2.83
2371 2732 8.905702 CGTCCAAAAATTCTTGTCTTAGATTTG 58.094 33.333 0.00 0.00 0.00 2.32
2372 2733 8.082242 CCGTCCAAAAATTCTTGTCTTAGATTT 58.918 33.333 0.00 0.00 0.00 2.17
2373 2734 7.447238 TCCGTCCAAAAATTCTTGTCTTAGATT 59.553 33.333 0.00 0.00 0.00 2.40
2374 2735 6.940298 TCCGTCCAAAAATTCTTGTCTTAGAT 59.060 34.615 0.00 0.00 0.00 1.98
2375 2736 6.292923 TCCGTCCAAAAATTCTTGTCTTAGA 58.707 36.000 0.00 0.00 0.00 2.10
2376 2737 6.348540 CCTCCGTCCAAAAATTCTTGTCTTAG 60.349 42.308 0.00 0.00 0.00 2.18
2377 2738 5.472137 CCTCCGTCCAAAAATTCTTGTCTTA 59.528 40.000 0.00 0.00 0.00 2.10
2378 2739 4.278419 CCTCCGTCCAAAAATTCTTGTCTT 59.722 41.667 0.00 0.00 0.00 3.01
2379 2740 3.821033 CCTCCGTCCAAAAATTCTTGTCT 59.179 43.478 0.00 0.00 0.00 3.41
2380 2741 3.057526 CCCTCCGTCCAAAAATTCTTGTC 60.058 47.826 0.00 0.00 0.00 3.18
2381 2742 2.890945 CCCTCCGTCCAAAAATTCTTGT 59.109 45.455 0.00 0.00 0.00 3.16
2382 2743 3.153919 TCCCTCCGTCCAAAAATTCTTG 58.846 45.455 0.00 0.00 0.00 3.02
2383 2744 3.181433 ACTCCCTCCGTCCAAAAATTCTT 60.181 43.478 0.00 0.00 0.00 2.52
2384 2745 2.375509 ACTCCCTCCGTCCAAAAATTCT 59.624 45.455 0.00 0.00 0.00 2.40
2385 2746 2.791655 ACTCCCTCCGTCCAAAAATTC 58.208 47.619 0.00 0.00 0.00 2.17
2386 2747 2.971901 ACTCCCTCCGTCCAAAAATT 57.028 45.000 0.00 0.00 0.00 1.82
2387 2748 5.906772 ATATACTCCCTCCGTCCAAAAAT 57.093 39.130 0.00 0.00 0.00 1.82
2388 2749 5.433526 CAATATACTCCCTCCGTCCAAAAA 58.566 41.667 0.00 0.00 0.00 1.94
2389 2750 4.685030 GCAATATACTCCCTCCGTCCAAAA 60.685 45.833 0.00 0.00 0.00 2.44
2390 2751 3.181458 GCAATATACTCCCTCCGTCCAAA 60.181 47.826 0.00 0.00 0.00 3.28
2391 2752 2.367567 GCAATATACTCCCTCCGTCCAA 59.632 50.000 0.00 0.00 0.00 3.53
2392 2753 1.968493 GCAATATACTCCCTCCGTCCA 59.032 52.381 0.00 0.00 0.00 4.02
2393 2754 2.249139 AGCAATATACTCCCTCCGTCC 58.751 52.381 0.00 0.00 0.00 4.79
2394 2755 3.069729 ACAAGCAATATACTCCCTCCGTC 59.930 47.826 0.00 0.00 0.00 4.79
2395 2756 3.039011 ACAAGCAATATACTCCCTCCGT 58.961 45.455 0.00 0.00 0.00 4.69
2396 2757 3.181465 ACACAAGCAATATACTCCCTCCG 60.181 47.826 0.00 0.00 0.00 4.63
2397 2758 4.101741 AGACACAAGCAATATACTCCCTCC 59.898 45.833 0.00 0.00 0.00 4.30
2398 2759 5.283457 AGACACAAGCAATATACTCCCTC 57.717 43.478 0.00 0.00 0.00 4.30
2399 2760 5.700402 AAGACACAAGCAATATACTCCCT 57.300 39.130 0.00 0.00 0.00 4.20
2400 2761 7.445945 AGATAAGACACAAGCAATATACTCCC 58.554 38.462 0.00 0.00 0.00 4.30
2401 2762 8.894768 AAGATAAGACACAAGCAATATACTCC 57.105 34.615 0.00 0.00 0.00 3.85
2478 2880 7.725251 TCTCAGGTAAAAATTTCACAGCAAAT 58.275 30.769 0.00 0.00 0.00 2.32
2552 2971 9.726232 GACTAAACGTTGGAAAAGAAACTAAAT 57.274 29.630 0.00 0.00 0.00 1.40
2718 3139 5.300034 TCATCTCGCTATCATGCCAAAAATT 59.700 36.000 0.00 0.00 0.00 1.82
2721 3142 3.807553 TCATCTCGCTATCATGCCAAAA 58.192 40.909 0.00 0.00 0.00 2.44
2827 3248 3.326747 ACTTCATTACTCGCAGGAACAC 58.673 45.455 0.00 0.00 0.00 3.32
3553 3999 1.982395 GCCAAACCCTTGCTACCCC 60.982 63.158 0.00 0.00 0.00 4.95
3554 4000 1.982395 GGCCAAACCCTTGCTACCC 60.982 63.158 0.00 0.00 0.00 3.69
3616 4071 3.978855 GCAATTAAGTGGTTTCGGTTCAC 59.021 43.478 4.91 0.00 0.00 3.18
3622 4077 4.693566 TGACCTAGCAATTAAGTGGTTTCG 59.306 41.667 13.26 3.92 0.00 3.46
3645 4107 5.011023 CCAAGTATTTTCTTGCCTTCTTGGT 59.989 40.000 11.07 0.00 42.94 3.67
3809 4271 5.490139 CCACAGTATGGCAAAGTTATGAG 57.510 43.478 0.00 0.00 43.24 2.90
3822 4284 7.623630 TGACATGGATATATTCCCACAGTATG 58.376 38.462 0.00 0.00 44.77 2.39
3945 4407 9.595823 TTATACAACCATAAGTTTAGTCTCTGC 57.404 33.333 0.00 0.00 36.18 4.26
4016 4486 9.573166 TCCATTTGAAATCTCTAGAAAGACAAA 57.427 29.630 0.00 4.41 0.00 2.83
4017 4487 9.003658 GTCCATTTGAAATCTCTAGAAAGACAA 57.996 33.333 0.00 0.00 0.00 3.18
4020 4490 9.877178 GTAGTCCATTTGAAATCTCTAGAAAGA 57.123 33.333 0.00 0.00 0.00 2.52
4022 4492 8.602424 TGGTAGTCCATTTGAAATCTCTAGAAA 58.398 33.333 0.00 0.00 39.03 2.52
4023 4493 8.041323 GTGGTAGTCCATTTGAAATCTCTAGAA 58.959 37.037 0.00 0.00 46.20 2.10
4024 4494 7.180229 TGTGGTAGTCCATTTGAAATCTCTAGA 59.820 37.037 0.00 0.00 46.20 2.43
4025 4495 7.331026 TGTGGTAGTCCATTTGAAATCTCTAG 58.669 38.462 0.00 0.00 46.20 2.43
4026 4496 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
4027 4497 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
4028 4498 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
4029 4499 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
4031 4501 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
4032 4502 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
4033 4503 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
4035 4505 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
4037 4507 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
4038 4508 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
4040 4510 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
4042 4512 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
4043 4513 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
4045 4515 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
4078 4548 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
4079 4549 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
4080 4550 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
4081 4551 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4082 4552 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4083 4553 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4084 4554 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4085 4555 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
4086 4556 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4087 4557 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
4088 4558 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
4089 4559 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
4090 4560 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
4091 4561 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
4092 4562 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
4093 4563 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
4094 4564 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
4095 4565 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
4096 4566 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
4097 4567 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
4098 4568 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
4099 4569 5.010314 ACTTCAACAAGTGACTACATACGGA 59.990 40.000 0.00 0.00 41.64 4.69
4100 4570 5.227908 ACTTCAACAAGTGACTACATACGG 58.772 41.667 0.00 0.00 41.64 4.02
4101 4571 6.150318 AGACTTCAACAAGTGACTACATACG 58.850 40.000 0.00 0.00 43.37 3.06
4102 4572 7.371936 AGAGACTTCAACAAGTGACTACATAC 58.628 38.462 0.00 0.00 43.37 2.39
4103 4573 7.526142 AGAGACTTCAACAAGTGACTACATA 57.474 36.000 0.00 0.00 43.37 2.29
4104 4574 6.412362 AGAGACTTCAACAAGTGACTACAT 57.588 37.500 0.00 0.00 43.37 2.29
4105 4575 5.854010 AGAGACTTCAACAAGTGACTACA 57.146 39.130 0.00 0.00 43.37 2.74
4106 4576 7.204496 TCTAGAGACTTCAACAAGTGACTAC 57.796 40.000 0.00 0.00 43.37 2.73
4107 4577 7.818997 TTCTAGAGACTTCAACAAGTGACTA 57.181 36.000 0.00 0.00 43.37 2.59
4108 4578 6.716934 TTCTAGAGACTTCAACAAGTGACT 57.283 37.500 0.00 0.00 43.37 3.41
4109 4579 7.168469 GTCTTTCTAGAGACTTCAACAAGTGAC 59.832 40.741 5.16 0.00 43.37 3.67
4110 4580 7.147897 TGTCTTTCTAGAGACTTCAACAAGTGA 60.148 37.037 12.02 0.00 43.37 3.41
4111 4581 6.980978 TGTCTTTCTAGAGACTTCAACAAGTG 59.019 38.462 12.02 0.00 43.37 3.16
4112 4582 7.113658 TGTCTTTCTAGAGACTTCAACAAGT 57.886 36.000 12.02 0.00 46.21 3.16
4113 4583 8.425577 TTTGTCTTTCTAGAGACTTCAACAAG 57.574 34.615 12.02 2.14 44.99 3.16
4114 4584 8.964476 ATTTGTCTTTCTAGAGACTTCAACAA 57.036 30.769 12.02 6.35 44.99 2.83
4125 4595 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
4126 4596 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
4127 4597 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
4128 4598 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
4129 4599 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
4130 4600 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4131 4601 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4134 4604 5.434408 GTCCCTCCGTTCCTAAATATTTGT 58.566 41.667 11.05 0.00 0.00 2.83
4137 4607 4.042174 TGGTCCCTCCGTTCCTAAATATT 58.958 43.478 0.00 0.00 39.52 1.28
4138 4608 3.646637 CTGGTCCCTCCGTTCCTAAATAT 59.353 47.826 0.00 0.00 39.52 1.28
4144 4614 0.115745 TAACTGGTCCCTCCGTTCCT 59.884 55.000 0.00 0.00 39.52 3.36
4145 4615 0.248565 GTAACTGGTCCCTCCGTTCC 59.751 60.000 0.00 0.00 39.52 3.62
4173 4643 9.357652 GCTTTGAAGAATCTATGCATGTAAAAA 57.642 29.630 10.16 0.00 33.66 1.94
4277 4848 4.322049 GCTGCACCTAGTCTAGTTTCTTCA 60.322 45.833 6.15 0.00 0.00 3.02
4611 5183 4.130118 CAAGAAGTACAACTGCCAGACTT 58.870 43.478 0.00 0.00 33.14 3.01
4718 5293 1.448985 AACAACGTGCACTCACTGTT 58.551 45.000 16.19 14.58 40.99 3.16
4816 5392 3.812262 TGCGAATGTCTGATGGATGAAT 58.188 40.909 0.00 0.00 0.00 2.57
4835 5434 8.860088 AGGTGATAAAGGGAAATAAATGTATGC 58.140 33.333 0.00 0.00 0.00 3.14
4959 5677 4.319177 AGATGGAAGACTGAGGAAAAACG 58.681 43.478 0.00 0.00 0.00 3.60
5093 5811 3.058224 CCGACCACTTTGGATCTTTTGTC 60.058 47.826 0.00 0.00 40.96 3.18
5134 5852 1.585521 CACGTAGCTCCCGCTTACG 60.586 63.158 5.69 3.66 46.47 3.18
5136 5854 2.344981 TGCACGTAGCTCCCGCTTA 61.345 57.895 10.54 0.00 46.47 3.09
5170 5888 9.863845 AAAGACGTAAAAGATGGAAAAAGAAAA 57.136 25.926 0.00 0.00 0.00 2.29
5175 5893 7.548967 ACCAAAAGACGTAAAAGATGGAAAAA 58.451 30.769 10.43 0.00 0.00 1.94
5176 5894 7.067737 AGACCAAAAGACGTAAAAGATGGAAAA 59.932 33.333 10.43 0.00 0.00 2.29
5177 5895 6.544564 AGACCAAAAGACGTAAAAGATGGAAA 59.455 34.615 10.43 0.00 0.00 3.13
5178 5896 6.059484 AGACCAAAAGACGTAAAAGATGGAA 58.941 36.000 10.43 0.00 0.00 3.53
5179 5897 5.617252 AGACCAAAAGACGTAAAAGATGGA 58.383 37.500 10.43 0.00 0.00 3.41
5258 5978 0.111061 TGCAGAACTGTGAGGGCAAT 59.889 50.000 3.77 0.00 0.00 3.56
5364 6084 1.689984 TTTGATGCACTTCTGCCACA 58.310 45.000 0.00 0.00 43.51 4.17
5455 6178 3.719268 TGGTACAACTTGGCAGATGAT 57.281 42.857 0.00 0.00 31.92 2.45
5648 6393 3.260632 AGCCCAAACTTTGTTCACAAACT 59.739 39.130 0.79 0.00 40.55 2.66
5700 6445 1.209127 CGGGCGAAAACCACATGAC 59.791 57.895 0.00 0.00 0.00 3.06
5703 6449 1.520600 GAACCGGGCGAAAACCACAT 61.521 55.000 6.32 0.00 0.00 3.21
5845 6594 0.310854 GCAAGTAACACTGGCACCAC 59.689 55.000 0.71 0.00 44.56 4.16
6023 6856 5.435686 TGCTGAATAGTATCCAGTGGTTT 57.564 39.130 9.54 0.58 0.00 3.27
6129 6962 7.067494 GGCTTGGAAGAATCTATGCTTCTAAAA 59.933 37.037 9.87 3.68 39.84 1.52
6131 6964 6.058183 GGCTTGGAAGAATCTATGCTTCTAA 58.942 40.000 9.96 9.28 40.20 2.10
6132 6965 5.367937 AGGCTTGGAAGAATCTATGCTTCTA 59.632 40.000 9.96 2.13 40.20 2.10
6133 6966 4.165758 AGGCTTGGAAGAATCTATGCTTCT 59.834 41.667 9.96 0.00 40.20 2.85
6134 6967 4.459330 AGGCTTGGAAGAATCTATGCTTC 58.541 43.478 2.46 2.46 37.37 3.86
6135 6968 4.516652 AGGCTTGGAAGAATCTATGCTT 57.483 40.909 0.00 0.00 37.37 3.91
6136 6969 4.165758 AGAAGGCTTGGAAGAATCTATGCT 59.834 41.667 3.46 0.00 37.37 3.79
6138 6971 6.374565 CAAGAAGGCTTGGAAGAATCTATG 57.625 41.667 3.46 0.00 46.13 2.23
6158 6991 8.522830 CACCCTATAAATATTACATTGGCCAAG 58.477 37.037 24.94 17.48 0.00 3.61
6160 6993 7.531317 ACACCCTATAAATATTACATTGGCCA 58.469 34.615 0.00 0.00 0.00 5.36
6161 6994 9.695155 ATACACCCTATAAATATTACATTGGCC 57.305 33.333 0.00 0.00 0.00 5.36
6178 7011 9.944376 GAATCTATGCATCTAAAATACACCCTA 57.056 33.333 0.19 0.00 0.00 3.53
6180 7013 8.854614 AGAATCTATGCATCTAAAATACACCC 57.145 34.615 0.19 0.00 0.00 4.61
6219 7079 9.727859 ACACATACAAGTACAACAATATTGGTA 57.272 29.630 19.37 9.89 0.00 3.25
6220 7080 8.630054 ACACATACAAGTACAACAATATTGGT 57.370 30.769 19.37 10.56 0.00 3.67
6229 7145 5.302360 TCAAGGGACACATACAAGTACAAC 58.698 41.667 0.00 0.00 0.00 3.32
6259 7175 5.674820 GCCTAGCAGCAAGAATACAAACTTC 60.675 44.000 0.00 0.00 0.00 3.01
6280 7196 6.547141 TGCTCTAATGCAAATACTTTATGCCT 59.453 34.615 0.00 0.00 40.29 4.75
6301 7217 7.807977 TCTTGGGAAATAGTTATCAATGCTC 57.192 36.000 0.00 0.00 0.00 4.26
6751 7669 7.335422 GCAAGAGAAGAAGAGAACAATATGGAA 59.665 37.037 0.00 0.00 0.00 3.53
6784 7702 4.975502 TCATCAATGCAACTTCGTGTTTTC 59.024 37.500 0.00 0.00 36.63 2.29
6817 7735 2.228822 CACCGAAGAGGAAAACAATGGG 59.771 50.000 0.00 0.00 45.00 4.00
6835 7753 4.984785 GCCAGAAGAATGAAAAGAAACACC 59.015 41.667 0.00 0.00 0.00 4.16
6935 7853 6.667007 AACTGACCGGGTAAAATAATTACG 57.333 37.500 6.32 0.00 0.00 3.18
7010 7928 4.690184 CAAACAGTGCTGCAAGATATCA 57.310 40.909 2.77 0.00 34.07 2.15
7172 8090 5.935945 TGTCCTTCATGGTCTTGAAAAGTA 58.064 37.500 0.00 0.00 38.91 2.24
7189 8107 1.123861 TGCAGGAGACAGCTGTCCTT 61.124 55.000 37.09 23.74 45.85 3.36
7265 8183 4.037923 TCCAACTTGGCAGATGAGAAAAAC 59.962 41.667 2.52 0.00 37.47 2.43
7307 8232 6.265422 GGGAAGGTTATGATTCCAAAATCGAT 59.735 38.462 6.33 0.00 45.70 3.59
7309 8234 5.594317 AGGGAAGGTTATGATTCCAAAATCG 59.406 40.000 6.33 0.00 45.70 3.34
7377 8302 2.100749 ACAAACAAACAAGGCTACAGGC 59.899 45.455 0.00 0.00 41.43 4.85
7507 8437 7.219535 GCAAACAAGTACAAGCATAGATCATTG 59.780 37.037 0.00 0.00 0.00 2.82
7509 8439 6.600822 AGCAAACAAGTACAAGCATAGATCAT 59.399 34.615 0.00 0.00 0.00 2.45
7510 8440 5.939883 AGCAAACAAGTACAAGCATAGATCA 59.060 36.000 0.00 0.00 0.00 2.92
7511 8441 6.253746 CAGCAAACAAGTACAAGCATAGATC 58.746 40.000 0.00 0.00 0.00 2.75
7513 8443 4.455533 CCAGCAAACAAGTACAAGCATAGA 59.544 41.667 0.00 0.00 0.00 1.98
7515 8445 3.057596 GCCAGCAAACAAGTACAAGCATA 60.058 43.478 0.00 0.00 0.00 3.14
7516 8446 2.288395 GCCAGCAAACAAGTACAAGCAT 60.288 45.455 0.00 0.00 0.00 3.79
7517 8447 1.066908 GCCAGCAAACAAGTACAAGCA 59.933 47.619 0.00 0.00 0.00 3.91
7518 8448 1.338020 AGCCAGCAAACAAGTACAAGC 59.662 47.619 0.00 0.00 0.00 4.01
7519 8449 2.287788 CCAGCCAGCAAACAAGTACAAG 60.288 50.000 0.00 0.00 0.00 3.16
7521 8451 1.317613 CCAGCCAGCAAACAAGTACA 58.682 50.000 0.00 0.00 0.00 2.90
7522 8452 0.039165 GCCAGCCAGCAAACAAGTAC 60.039 55.000 0.00 0.00 0.00 2.73
7524 8454 1.456331 AGCCAGCCAGCAAACAAGT 60.456 52.632 0.00 0.00 34.23 3.16
7525 8455 1.006571 CAGCCAGCCAGCAAACAAG 60.007 57.895 0.00 0.00 34.23 3.16
7526 8456 2.500714 CCAGCCAGCCAGCAAACAA 61.501 57.895 0.00 0.00 34.23 2.83
7527 8457 2.913578 CCAGCCAGCCAGCAAACA 60.914 61.111 0.00 0.00 34.23 2.83
7528 8458 4.368543 GCCAGCCAGCCAGCAAAC 62.369 66.667 0.00 0.00 34.23 2.93
7529 8459 4.608774 AGCCAGCCAGCCAGCAAA 62.609 61.111 4.54 0.00 34.23 3.68
7530 8460 4.608774 AAGCCAGCCAGCCAGCAA 62.609 61.111 4.54 0.00 34.23 3.91
7593 8523 3.388024 TGTGCACCCCTCAGATCTATTAC 59.612 47.826 15.69 0.00 0.00 1.89
7696 8626 3.777106 ACTCCAAAGAGCATGTCAAGA 57.223 42.857 0.00 0.00 44.65 3.02
7702 8632 5.050567 GCTTTCAAAAACTCCAAAGAGCATG 60.051 40.000 0.00 0.00 44.65 4.06
7703 8633 5.052481 GCTTTCAAAAACTCCAAAGAGCAT 58.948 37.500 0.00 0.00 44.65 3.79
7712 8642 4.743493 TCACAAGTGCTTTCAAAAACTCC 58.257 39.130 0.00 0.00 0.00 3.85
7721 8651 8.759641 CATCATATACTACTCACAAGTGCTTTC 58.240 37.037 0.00 0.00 36.92 2.62
7817 8762 4.145928 GTGTACATTAACCATCGATCGACG 59.854 45.833 22.06 13.01 44.09 5.12
7848 8793 0.820482 TGTGCTGATGCTGCAGTGTT 60.820 50.000 16.64 0.00 38.86 3.32
8053 8998 1.476488 GGCACCCGATGTAGCAAAATT 59.524 47.619 0.00 0.00 0.00 1.82
8111 9056 2.338785 GGCAAGCCAAGAGGAGCAC 61.339 63.158 6.14 0.00 36.89 4.40
8256 9218 3.360758 GTGATGCGTTTTTGGAAATCGAC 59.639 43.478 7.76 1.72 0.00 4.20
8321 9283 2.368655 AACGGTGTGGTATTACGTCC 57.631 50.000 0.00 0.00 36.69 4.79
8342 9304 3.651803 TTCAATGCCCCAACTAAAACG 57.348 42.857 0.00 0.00 0.00 3.60
8482 9449 7.310664 GCATATGCACAATAGAATACAGCAAT 58.689 34.615 22.84 0.00 41.59 3.56
8502 9469 5.301835 ACTTCTGCTCCATAACTGCATAT 57.698 39.130 0.00 0.00 36.07 1.78
8503 9470 4.760530 ACTTCTGCTCCATAACTGCATA 57.239 40.909 0.00 0.00 36.07 3.14
8515 9482 6.610741 TTCTTTCTCAAGAAACTTCTGCTC 57.389 37.500 1.06 0.00 44.56 4.26
8525 9492 4.214119 CCTCGCACATTTCTTTCTCAAGAA 59.786 41.667 0.00 0.00 45.63 2.52
8526 9493 3.748048 CCTCGCACATTTCTTTCTCAAGA 59.252 43.478 0.00 0.00 37.24 3.02
8527 9494 3.499918 ACCTCGCACATTTCTTTCTCAAG 59.500 43.478 0.00 0.00 0.00 3.02
8528 9495 3.476552 ACCTCGCACATTTCTTTCTCAA 58.523 40.909 0.00 0.00 0.00 3.02
8529 9496 3.067106 GACCTCGCACATTTCTTTCTCA 58.933 45.455 0.00 0.00 0.00 3.27
8544 9511 2.809601 CGGCTGAAACGGACCTCG 60.810 66.667 0.00 0.00 45.88 4.63
8559 9526 2.430694 TGATTGATACCCTGACAGTCGG 59.569 50.000 1.86 1.86 0.00 4.79
8570 9538 7.742151 GCAAAAAGATTTGGTTGATTGATACC 58.258 34.615 3.75 0.00 44.93 2.73
8593 9561 0.461548 CTAGAGGGACGATGCAAGCA 59.538 55.000 0.00 0.00 0.00 3.91
8668 9805 7.009174 CCCAAATTTAAAGTAATAGCAACGCTG 59.991 37.037 0.00 0.00 40.10 5.18
8669 9806 7.033185 CCCAAATTTAAAGTAATAGCAACGCT 58.967 34.615 0.00 0.00 43.41 5.07
8730 9885 5.487488 TCCTCCCAACTGCTAGAGAAAAATA 59.513 40.000 0.00 0.00 0.00 1.40
8741 9896 1.359474 TCTACTCTCCTCCCAACTGCT 59.641 52.381 0.00 0.00 0.00 4.24
8743 9898 2.024846 TCCTCTACTCTCCTCCCAACTG 60.025 54.545 0.00 0.00 0.00 3.16
8749 9904 2.108250 AGCATCTCCTCTACTCTCCTCC 59.892 54.545 0.00 0.00 0.00 4.30
8752 9907 2.514803 GGAGCATCTCCTCTACTCTCC 58.485 57.143 5.65 0.00 46.41 3.71
8772 9927 7.442062 TGTTGACATGCATAATACTCCTACATG 59.558 37.037 0.00 0.00 39.38 3.21
8775 9930 7.148738 CGATGTTGACATGCATAATACTCCTAC 60.149 40.741 0.00 0.00 36.57 3.18
8776 9931 6.868339 CGATGTTGACATGCATAATACTCCTA 59.132 38.462 0.00 0.00 36.57 2.94
8777 9932 5.698089 CGATGTTGACATGCATAATACTCCT 59.302 40.000 0.00 0.00 36.57 3.69
8839 10004 2.270352 AACAAATGACGGAGCCAGAA 57.730 45.000 0.00 0.00 0.00 3.02
8840 10005 2.270352 AAACAAATGACGGAGCCAGA 57.730 45.000 0.00 0.00 0.00 3.86
8899 10065 2.851824 CTGACAAAAACACAGCGGTTTC 59.148 45.455 4.98 0.00 39.93 2.78
8919 10085 2.224646 GGAAGAAGAAACAGGGCTGACT 60.225 50.000 0.00 0.00 0.00 3.41
8954 10132 3.762288 AGGGCCTAATTTCGTTTTCTTCC 59.238 43.478 2.82 0.00 0.00 3.46
9039 10217 4.096003 ACATGTCCTTCGCCGGGG 62.096 66.667 13.31 13.31 0.00 5.73
9163 10381 2.022129 CTGCACGTTCTCGACCACC 61.022 63.158 0.00 0.00 40.62 4.61
9164 10382 1.007734 TCTGCACGTTCTCGACCAC 60.008 57.895 0.00 0.00 40.62 4.16
9165 10383 1.007734 GTCTGCACGTTCTCGACCA 60.008 57.895 0.00 0.00 40.62 4.02
9195 10741 0.249398 AGAACATACCGGCTTTCGCT 59.751 50.000 0.00 0.00 37.59 4.93
9204 10750 3.485216 GCGGACATGAAAAGAACATACCG 60.485 47.826 0.00 2.48 42.88 4.02
9205 10751 3.181500 GGCGGACATGAAAAGAACATACC 60.181 47.826 0.00 0.00 0.00 2.73
9219 10770 2.125673 GTACAGTGCGGCGGACAT 60.126 61.111 32.28 21.89 0.00 3.06
9381 11026 2.849007 GACGACGACGACGACAGA 59.151 61.111 25.15 0.00 42.66 3.41
9477 11155 2.293399 GCAAGGAAACAACCTACCACTG 59.707 50.000 0.00 0.00 39.62 3.66
9534 11219 1.590147 CACTCACTACCCCGTCACC 59.410 63.158 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.