Multiple sequence alignment - TraesCS6D01G230300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G230300 chr6D 100.000 1988 0 0 1 1988 323687214 323689201 0.000000e+00 3672.0
1 TraesCS6D01G230300 chr6D 88.319 565 50 10 1 552 320652521 320653082 0.000000e+00 664.0
2 TraesCS6D01G230300 chr6D 87.792 557 50 11 1 543 175801359 175801911 1.120000e-178 636.0
3 TraesCS6D01G230300 chr6D 100.000 344 0 0 2535 2878 323689748 323690091 1.120000e-178 636.0
4 TraesCS6D01G230300 chr6D 83.993 556 77 9 8 552 129696816 129696262 9.140000e-145 523.0
5 TraesCS6D01G230300 chr6D 95.495 111 5 0 2768 2878 57442392 57442502 8.190000e-41 178.0
6 TraesCS6D01G230300 chr6D 96.330 109 3 1 2771 2878 71885817 71885709 8.190000e-41 178.0
7 TraesCS6D01G230300 chr6D 95.495 111 5 0 2768 2878 399078253 399078363 8.190000e-41 178.0
8 TraesCS6D01G230300 chr6D 96.296 108 4 0 2771 2878 429517592 429517485 8.190000e-41 178.0
9 TraesCS6D01G230300 chr6A 96.312 1166 39 2 777 1939 461111973 461113137 0.000000e+00 1912.0
10 TraesCS6D01G230300 chr6B 94.936 1165 51 4 787 1946 500239970 500238809 0.000000e+00 1818.0
11 TraesCS6D01G230300 chr6B 82.209 163 25 4 572 732 633411587 633411427 1.390000e-28 137.0
12 TraesCS6D01G230300 chr2D 87.057 564 61 7 1 552 228810728 228811291 6.770000e-176 627.0
13 TraesCS6D01G230300 chr2D 82.231 242 33 8 555 787 484937044 484937284 1.750000e-47 200.0
14 TraesCS6D01G230300 chr3D 86.195 565 60 14 1 552 489523016 489523575 1.910000e-166 595.0
15 TraesCS6D01G230300 chr3D 85.943 562 64 11 2 552 106223972 106223415 1.150000e-163 586.0
16 TraesCS6D01G230300 chr3D 84.298 242 29 7 555 788 179464486 179464246 8.020000e-56 228.0
17 TraesCS6D01G230300 chr3D 83.682 239 32 2 555 786 305597683 305597445 4.830000e-53 219.0
18 TraesCS6D01G230300 chr3B 84.656 567 66 14 1 552 668469333 668469893 1.950000e-151 545.0
19 TraesCS6D01G230300 chr3B 96.396 111 4 0 2768 2878 681611069 681611179 1.760000e-42 183.0
20 TraesCS6D01G230300 chr3B 100.000 29 0 0 570 598 618671885 618671857 1.000000e-03 54.7
21 TraesCS6D01G230300 chr2A 84.588 558 74 8 4 552 544550088 544549534 7.010000e-151 544.0
22 TraesCS6D01G230300 chr2A 79.583 240 35 5 555 786 524723895 524724128 2.970000e-35 159.0
23 TraesCS6D01G230300 chr4D 83.569 566 75 13 1 552 229217082 229216521 5.500000e-142 514.0
24 TraesCS6D01G230300 chr4D 95.495 111 5 0 2768 2878 65601898 65602008 8.190000e-41 178.0
25 TraesCS6D01G230300 chrUn 83.817 241 32 2 555 788 101060492 101060732 3.730000e-54 222.0
26 TraesCS6D01G230300 chr1D 83.402 241 30 5 552 785 483702908 483703145 6.250000e-52 215.0
27 TraesCS6D01G230300 chr1D 96.364 110 2 2 2771 2878 232979537 232979428 2.280000e-41 180.0
28 TraesCS6D01G230300 chr3A 81.176 255 37 9 553 798 222458720 222458468 8.140000e-46 195.0
29 TraesCS6D01G230300 chr4A 96.396 111 4 0 2768 2878 118425425 118425535 1.760000e-42 183.0
30 TraesCS6D01G230300 chr1B 96.396 111 4 0 2768 2878 460243062 460243172 1.760000e-42 183.0
31 TraesCS6D01G230300 chr5B 82.353 119 14 4 675 787 577334411 577334528 2.360000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G230300 chr6D 323687214 323690091 2877 False 2154 3672 100.000 1 2878 2 chr6D.!!$F5 2877
1 TraesCS6D01G230300 chr6D 320652521 320653082 561 False 664 664 88.319 1 552 1 chr6D.!!$F3 551
2 TraesCS6D01G230300 chr6D 175801359 175801911 552 False 636 636 87.792 1 543 1 chr6D.!!$F2 542
3 TraesCS6D01G230300 chr6D 129696262 129696816 554 True 523 523 83.993 8 552 1 chr6D.!!$R2 544
4 TraesCS6D01G230300 chr6A 461111973 461113137 1164 False 1912 1912 96.312 777 1939 1 chr6A.!!$F1 1162
5 TraesCS6D01G230300 chr6B 500238809 500239970 1161 True 1818 1818 94.936 787 1946 1 chr6B.!!$R1 1159
6 TraesCS6D01G230300 chr2D 228810728 228811291 563 False 627 627 87.057 1 552 1 chr2D.!!$F1 551
7 TraesCS6D01G230300 chr3D 489523016 489523575 559 False 595 595 86.195 1 552 1 chr3D.!!$F1 551
8 TraesCS6D01G230300 chr3D 106223415 106223972 557 True 586 586 85.943 2 552 1 chr3D.!!$R1 550
9 TraesCS6D01G230300 chr3B 668469333 668469893 560 False 545 545 84.656 1 552 1 chr3B.!!$F1 551
10 TraesCS6D01G230300 chr2A 544549534 544550088 554 True 544 544 84.588 4 552 1 chr2A.!!$R1 548
11 TraesCS6D01G230300 chr4D 229216521 229217082 561 True 514 514 83.569 1 552 1 chr4D.!!$R1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
782 808 0.030101 AATGCGACCAACCAAACACG 59.97 50.0 0.0 0.0 0.0 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2748 2782 0.107312 ACATGTGAGCTGCCTGGATC 60.107 55.0 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.920912 ACGCTCTCCCCGACCAAA 60.921 61.111 0.00 0.00 0.00 3.28
105 106 2.164624 GCCTGTCTGTCAAGTACGAGAT 59.835 50.000 0.00 0.00 0.00 2.75
201 202 1.153168 CCTACACCCGGCCAGATTG 60.153 63.158 2.24 0.00 0.00 2.67
262 266 2.712057 CACCCATGCAAAGAGTTCAC 57.288 50.000 0.00 0.00 0.00 3.18
283 296 3.711704 ACCCCCATAGAGATTACACACAG 59.288 47.826 0.00 0.00 0.00 3.66
404 425 4.463879 CCCCGCAGAGCAGGACTG 62.464 72.222 0.00 0.00 38.27 3.51
408 429 3.325753 GCAGAGCAGGACTGGGGT 61.326 66.667 1.01 0.00 36.09 4.95
409 430 2.667418 CAGAGCAGGACTGGGGTG 59.333 66.667 1.01 0.00 0.00 4.61
410 431 2.205462 AGAGCAGGACTGGGGTGT 59.795 61.111 1.01 0.00 0.00 4.16
412 433 0.178903 AGAGCAGGACTGGGGTGTTA 60.179 55.000 1.01 0.00 0.00 2.41
414 435 1.073284 GAGCAGGACTGGGGTGTTAAA 59.927 52.381 1.01 0.00 0.00 1.52
416 437 2.091555 AGCAGGACTGGGGTGTTAAAAA 60.092 45.455 1.01 0.00 0.00 1.94
433 459 0.836400 AAAGAGAGCCCCGAACCTGA 60.836 55.000 0.00 0.00 0.00 3.86
505 531 0.669077 CGATGTCTTACTCTCCCCCG 59.331 60.000 0.00 0.00 0.00 5.73
516 542 0.399949 TCTCCCCCGCCATGATAAGT 60.400 55.000 0.00 0.00 0.00 2.24
532 558 7.830697 CCATGATAAGTCATCCTTTGGCATATA 59.169 37.037 0.00 0.00 43.14 0.86
543 569 2.741759 TGGCATATATCGCACGACAT 57.258 45.000 0.00 0.00 0.00 3.06
552 578 2.509336 GCACGACATCCCCGACAG 60.509 66.667 0.00 0.00 0.00 3.51
553 579 3.001902 GCACGACATCCCCGACAGA 62.002 63.158 0.00 0.00 0.00 3.41
554 580 1.589630 CACGACATCCCCGACAGAA 59.410 57.895 0.00 0.00 0.00 3.02
555 581 0.458543 CACGACATCCCCGACAGAAG 60.459 60.000 0.00 0.00 0.00 2.85
556 582 0.898789 ACGACATCCCCGACAGAAGT 60.899 55.000 0.00 0.00 0.00 3.01
557 583 0.246635 CGACATCCCCGACAGAAGTT 59.753 55.000 0.00 0.00 0.00 2.66
558 584 1.475280 CGACATCCCCGACAGAAGTTA 59.525 52.381 0.00 0.00 0.00 2.24
559 585 2.100916 CGACATCCCCGACAGAAGTTAT 59.899 50.000 0.00 0.00 0.00 1.89
560 586 3.458189 GACATCCCCGACAGAAGTTATG 58.542 50.000 0.00 0.00 0.00 1.90
561 587 3.104512 ACATCCCCGACAGAAGTTATGA 58.895 45.455 4.13 0.00 0.00 2.15
562 588 3.133003 ACATCCCCGACAGAAGTTATGAG 59.867 47.826 4.13 0.00 0.00 2.90
563 589 1.480954 TCCCCGACAGAAGTTATGAGC 59.519 52.381 4.13 0.00 0.00 4.26
564 590 1.207089 CCCCGACAGAAGTTATGAGCA 59.793 52.381 4.13 0.00 0.00 4.26
565 591 2.544685 CCCGACAGAAGTTATGAGCAG 58.455 52.381 4.13 0.00 0.00 4.24
566 592 2.093973 CCCGACAGAAGTTATGAGCAGT 60.094 50.000 4.13 0.00 0.00 4.40
567 593 3.182967 CCGACAGAAGTTATGAGCAGTC 58.817 50.000 4.13 0.00 0.00 3.51
568 594 2.848887 CGACAGAAGTTATGAGCAGTCG 59.151 50.000 4.13 0.00 41.00 4.18
569 595 2.600867 GACAGAAGTTATGAGCAGTCGC 59.399 50.000 4.13 0.00 38.99 5.19
570 596 1.585668 CAGAAGTTATGAGCAGTCGCG 59.414 52.381 0.00 0.00 45.49 5.87
571 597 1.202582 AGAAGTTATGAGCAGTCGCGT 59.797 47.619 5.77 0.00 45.49 6.01
572 598 1.584308 GAAGTTATGAGCAGTCGCGTC 59.416 52.381 5.77 0.00 45.49 5.19
573 599 0.523546 AGTTATGAGCAGTCGCGTCG 60.524 55.000 5.77 0.00 45.49 5.12
574 600 0.797249 GTTATGAGCAGTCGCGTCGT 60.797 55.000 5.77 0.00 45.49 4.34
575 601 0.522705 TTATGAGCAGTCGCGTCGTC 60.523 55.000 5.77 1.15 45.49 4.20
576 602 1.366854 TATGAGCAGTCGCGTCGTCT 61.367 55.000 5.77 2.83 45.49 4.18
577 603 2.574736 GAGCAGTCGCGTCGTCTC 60.575 66.667 5.77 8.94 45.49 3.36
578 604 4.104417 AGCAGTCGCGTCGTCTCC 62.104 66.667 5.77 0.00 45.49 3.71
580 606 4.813526 CAGTCGCGTCGTCTCCCG 62.814 72.222 5.77 0.00 38.13 5.14
590 616 4.388499 GTCTCCCGCGCTTCCCAA 62.388 66.667 5.56 0.00 0.00 4.12
591 617 4.082523 TCTCCCGCGCTTCCCAAG 62.083 66.667 5.56 0.00 0.00 3.61
599 625 3.741476 GCTTCCCAAGGCGTGCAG 61.741 66.667 0.00 0.00 0.00 4.41
600 626 2.032528 CTTCCCAAGGCGTGCAGA 59.967 61.111 0.00 0.00 0.00 4.26
601 627 2.281484 TTCCCAAGGCGTGCAGAC 60.281 61.111 0.00 0.00 0.00 3.51
628 654 4.560856 GCGTGGATCGAGCGAGCT 62.561 66.667 8.09 0.00 42.86 4.09
629 655 2.103143 CGTGGATCGAGCGAGCTT 59.897 61.111 8.09 0.00 42.86 3.74
630 656 2.226896 CGTGGATCGAGCGAGCTTG 61.227 63.158 8.09 5.99 42.86 4.01
631 657 1.139734 GTGGATCGAGCGAGCTTGA 59.860 57.895 16.45 16.45 40.39 3.02
632 658 1.139734 TGGATCGAGCGAGCTTGAC 59.860 57.895 16.45 10.63 39.08 3.18
633 659 1.315981 TGGATCGAGCGAGCTTGACT 61.316 55.000 16.45 0.94 39.08 3.41
634 660 0.593773 GGATCGAGCGAGCTTGACTC 60.594 60.000 16.45 13.95 39.08 3.36
664 690 2.099141 CTGATTCAGCCGTTCCTTCA 57.901 50.000 0.00 0.00 0.00 3.02
665 691 2.005451 CTGATTCAGCCGTTCCTTCAG 58.995 52.381 0.00 0.00 0.00 3.02
666 692 1.623311 TGATTCAGCCGTTCCTTCAGA 59.377 47.619 0.00 0.00 0.00 3.27
667 693 2.275318 GATTCAGCCGTTCCTTCAGAG 58.725 52.381 0.00 0.00 0.00 3.35
668 694 0.320771 TTCAGCCGTTCCTTCAGAGC 60.321 55.000 0.00 0.00 0.00 4.09
669 695 1.743252 CAGCCGTTCCTTCAGAGCC 60.743 63.158 0.00 0.00 0.00 4.70
670 696 2.217038 AGCCGTTCCTTCAGAGCCA 61.217 57.895 0.00 0.00 0.00 4.75
671 697 1.743252 GCCGTTCCTTCAGAGCCAG 60.743 63.158 0.00 0.00 0.00 4.85
672 698 1.078848 CCGTTCCTTCAGAGCCAGG 60.079 63.158 0.00 0.00 0.00 4.45
673 699 1.743252 CGTTCCTTCAGAGCCAGGC 60.743 63.158 1.84 1.84 0.00 4.85
674 700 1.377856 GTTCCTTCAGAGCCAGGCC 60.378 63.158 8.22 0.00 0.00 5.19
675 701 2.606587 TTCCTTCAGAGCCAGGCCC 61.607 63.158 8.22 0.00 0.00 5.80
676 702 3.333219 CCTTCAGAGCCAGGCCCA 61.333 66.667 8.22 0.00 0.00 5.36
677 703 2.271497 CTTCAGAGCCAGGCCCAG 59.729 66.667 8.22 0.00 0.00 4.45
678 704 2.203983 TTCAGAGCCAGGCCCAGA 60.204 61.111 8.22 0.00 0.00 3.86
679 705 2.533974 CTTCAGAGCCAGGCCCAGAC 62.534 65.000 8.22 0.00 0.00 3.51
680 706 4.106925 CAGAGCCAGGCCCAGACC 62.107 72.222 8.22 0.00 0.00 3.85
681 707 4.345286 AGAGCCAGGCCCAGACCT 62.345 66.667 8.22 0.00 42.30 3.85
687 713 4.250699 AGGCCCAGACCTGCTTTA 57.749 55.556 0.00 0.00 39.13 1.85
688 714 2.474924 AGGCCCAGACCTGCTTTAA 58.525 52.632 0.00 0.00 39.13 1.52
689 715 0.329596 AGGCCCAGACCTGCTTTAAG 59.670 55.000 0.00 0.00 39.13 1.85
690 716 0.681243 GGCCCAGACCTGCTTTAAGG 60.681 60.000 0.00 0.00 43.57 2.69
698 724 1.234821 CCTGCTTTAAGGTTCGTGCA 58.765 50.000 0.00 0.00 32.17 4.57
699 725 1.197721 CCTGCTTTAAGGTTCGTGCAG 59.802 52.381 0.00 0.00 44.97 4.41
700 726 1.197721 CTGCTTTAAGGTTCGTGCAGG 59.802 52.381 0.00 0.00 42.64 4.85
701 727 1.235724 GCTTTAAGGTTCGTGCAGGT 58.764 50.000 6.26 0.00 0.00 4.00
702 728 1.197036 GCTTTAAGGTTCGTGCAGGTC 59.803 52.381 6.26 1.44 0.00 3.85
703 729 2.489971 CTTTAAGGTTCGTGCAGGTCA 58.510 47.619 6.26 0.00 0.00 4.02
704 730 1.873698 TTAAGGTTCGTGCAGGTCAC 58.126 50.000 6.26 4.78 42.23 3.67
712 738 2.927004 GTGCAGGTCACGAATTGGA 58.073 52.632 0.00 0.00 35.76 3.53
713 739 1.453155 GTGCAGGTCACGAATTGGAT 58.547 50.000 0.00 0.00 35.76 3.41
714 740 1.131126 GTGCAGGTCACGAATTGGATG 59.869 52.381 0.00 0.00 35.76 3.51
715 741 0.099436 GCAGGTCACGAATTGGATGC 59.901 55.000 0.00 0.00 0.00 3.91
716 742 0.374758 CAGGTCACGAATTGGATGCG 59.625 55.000 0.00 0.00 0.00 4.73
717 743 0.249120 AGGTCACGAATTGGATGCGA 59.751 50.000 0.00 0.00 0.00 5.10
718 744 1.134401 AGGTCACGAATTGGATGCGAT 60.134 47.619 0.00 0.00 0.00 4.58
719 745 1.261619 GGTCACGAATTGGATGCGATC 59.738 52.381 0.00 0.00 0.00 3.69
729 755 3.458872 GATGCGATCCAGACAACCA 57.541 52.632 0.00 0.00 0.00 3.67
730 756 1.737838 GATGCGATCCAGACAACCAA 58.262 50.000 0.00 0.00 0.00 3.67
731 757 2.083774 GATGCGATCCAGACAACCAAA 58.916 47.619 0.00 0.00 0.00 3.28
732 758 1.234821 TGCGATCCAGACAACCAAAC 58.765 50.000 0.00 0.00 0.00 2.93
733 759 0.165944 GCGATCCAGACAACCAAACG 59.834 55.000 0.00 0.00 0.00 3.60
734 760 0.796312 CGATCCAGACAACCAAACGG 59.204 55.000 0.00 0.00 0.00 4.44
735 761 1.606994 CGATCCAGACAACCAAACGGA 60.607 52.381 0.00 0.00 0.00 4.69
736 762 1.804748 GATCCAGACAACCAAACGGAC 59.195 52.381 0.00 0.00 0.00 4.79
737 763 0.834612 TCCAGACAACCAAACGGACT 59.165 50.000 0.00 0.00 0.00 3.85
738 764 2.040939 TCCAGACAACCAAACGGACTA 58.959 47.619 0.00 0.00 0.00 2.59
739 765 2.036733 TCCAGACAACCAAACGGACTAG 59.963 50.000 0.00 0.00 0.00 2.57
740 766 2.036733 CCAGACAACCAAACGGACTAGA 59.963 50.000 0.00 0.00 0.00 2.43
741 767 3.306780 CCAGACAACCAAACGGACTAGAT 60.307 47.826 0.00 0.00 0.00 1.98
742 768 4.315803 CAGACAACCAAACGGACTAGATT 58.684 43.478 0.00 0.00 0.00 2.40
743 769 4.389077 CAGACAACCAAACGGACTAGATTC 59.611 45.833 0.00 0.00 0.00 2.52
744 770 4.283722 AGACAACCAAACGGACTAGATTCT 59.716 41.667 0.00 0.00 0.00 2.40
745 771 4.969484 ACAACCAAACGGACTAGATTCTT 58.031 39.130 0.00 0.00 0.00 2.52
746 772 4.995487 ACAACCAAACGGACTAGATTCTTC 59.005 41.667 0.00 0.00 0.00 2.87
747 773 4.203654 ACCAAACGGACTAGATTCTTCC 57.796 45.455 0.00 0.00 0.00 3.46
748 774 3.055312 ACCAAACGGACTAGATTCTTCCC 60.055 47.826 0.00 0.00 0.00 3.97
749 775 3.187700 CAAACGGACTAGATTCTTCCCG 58.812 50.000 15.11 15.11 42.30 5.14
750 776 0.745468 ACGGACTAGATTCTTCCCGC 59.255 55.000 16.07 0.00 40.48 6.13
751 777 0.317938 CGGACTAGATTCTTCCCGCG 60.318 60.000 0.00 0.00 0.00 6.46
752 778 0.745468 GGACTAGATTCTTCCCGCGT 59.255 55.000 4.92 0.00 0.00 6.01
753 779 1.536284 GGACTAGATTCTTCCCGCGTG 60.536 57.143 4.92 0.00 0.00 5.34
754 780 0.460311 ACTAGATTCTTCCCGCGTGG 59.540 55.000 8.42 8.42 0.00 4.94
755 781 0.876342 CTAGATTCTTCCCGCGTGGC 60.876 60.000 10.27 0.00 0.00 5.01
756 782 2.306255 TAGATTCTTCCCGCGTGGCC 62.306 60.000 10.27 0.00 0.00 5.36
757 783 4.796495 ATTCTTCCCGCGTGGCCC 62.796 66.667 10.27 0.00 0.00 5.80
765 791 4.524318 CGCGTGGCCCGACCTAAT 62.524 66.667 16.53 0.00 40.22 1.73
766 792 2.895372 GCGTGGCCCGACCTAATG 60.895 66.667 16.53 0.00 40.22 1.90
767 793 2.895372 CGTGGCCCGACCTAATGC 60.895 66.667 0.00 0.00 40.22 3.56
768 794 2.895372 GTGGCCCGACCTAATGCG 60.895 66.667 0.00 0.00 40.22 4.73
769 795 3.078196 TGGCCCGACCTAATGCGA 61.078 61.111 0.00 0.00 40.22 5.10
770 796 2.588034 GGCCCGACCTAATGCGAC 60.588 66.667 0.00 0.00 34.51 5.19
771 797 2.588034 GCCCGACCTAATGCGACC 60.588 66.667 0.00 0.00 0.00 4.79
772 798 2.897207 CCCGACCTAATGCGACCA 59.103 61.111 0.00 0.00 0.00 4.02
773 799 1.219664 CCCGACCTAATGCGACCAA 59.780 57.895 0.00 0.00 0.00 3.67
774 800 1.087771 CCCGACCTAATGCGACCAAC 61.088 60.000 0.00 0.00 0.00 3.77
775 801 1.087771 CCGACCTAATGCGACCAACC 61.088 60.000 0.00 0.00 0.00 3.77
776 802 0.390603 CGACCTAATGCGACCAACCA 60.391 55.000 0.00 0.00 0.00 3.67
777 803 1.816074 GACCTAATGCGACCAACCAA 58.184 50.000 0.00 0.00 0.00 3.67
778 804 2.156098 GACCTAATGCGACCAACCAAA 58.844 47.619 0.00 0.00 0.00 3.28
779 805 1.883926 ACCTAATGCGACCAACCAAAC 59.116 47.619 0.00 0.00 0.00 2.93
780 806 1.883275 CCTAATGCGACCAACCAAACA 59.117 47.619 0.00 0.00 0.00 2.83
781 807 2.351350 CCTAATGCGACCAACCAAACAC 60.351 50.000 0.00 0.00 0.00 3.32
782 808 0.030101 AATGCGACCAACCAAACACG 59.970 50.000 0.00 0.00 0.00 4.49
783 809 1.098712 ATGCGACCAACCAAACACGT 61.099 50.000 0.00 0.00 0.00 4.49
784 810 1.010462 GCGACCAACCAAACACGTC 60.010 57.895 0.00 0.00 0.00 4.34
785 811 1.644913 CGACCAACCAAACACGTCC 59.355 57.895 0.00 0.00 0.00 4.79
1192 1221 1.549170 ACAACGTCCTCCAGGTACATC 59.451 52.381 0.00 0.00 36.34 3.06
1198 1227 1.680522 CCTCCAGGTACATCTGCGCT 61.681 60.000 9.73 0.00 33.64 5.92
1244 1273 3.113386 CTCGCCGTGCTCTGATCGA 62.113 63.158 0.00 0.00 0.00 3.59
1324 1353 2.870161 CGCGTCGACGACCTGAAG 60.870 66.667 39.74 16.88 43.02 3.02
1339 1368 0.179086 TGAAGCTGTTCGACTGCACA 60.179 50.000 15.27 12.39 44.20 4.57
1369 1398 0.885150 TACGCACACCAAAATCGCCA 60.885 50.000 0.00 0.00 0.00 5.69
1394 1423 0.107831 AGGCGTGGCTGTTCTGTTTA 59.892 50.000 0.00 0.00 0.00 2.01
1600 1629 1.340658 CATGTCGTCGTCTGGAAGTG 58.659 55.000 0.00 0.00 33.76 3.16
1604 1633 2.365068 CGTCGTCTGGAAGTGTGCG 61.365 63.158 0.00 0.00 33.76 5.34
1781 1813 4.697756 CAGAACGGGAAGCGGCCA 62.698 66.667 2.24 0.00 0.00 5.36
1797 1829 4.394078 CAAGGGCGTCGTCGTCGA 62.394 66.667 15.85 0.00 43.10 4.20
1919 1951 0.033090 CCTTAGACGTATTCCCGGGC 59.967 60.000 18.49 0.00 0.00 6.13
1931 1965 1.001393 CCCGGGCCATTGTAGTTGT 60.001 57.895 8.08 0.00 0.00 3.32
1939 1973 2.293122 GCCATTGTAGTTGTGCTGTTGA 59.707 45.455 0.00 0.00 0.00 3.18
1940 1974 3.243367 GCCATTGTAGTTGTGCTGTTGAA 60.243 43.478 0.00 0.00 0.00 2.69
1941 1975 4.559300 GCCATTGTAGTTGTGCTGTTGAAT 60.559 41.667 0.00 0.00 0.00 2.57
1942 1976 4.919168 CCATTGTAGTTGTGCTGTTGAATG 59.081 41.667 0.00 0.00 0.00 2.67
1943 1977 5.507817 CCATTGTAGTTGTGCTGTTGAATGT 60.508 40.000 0.00 0.00 0.00 2.71
1944 1978 4.811555 TGTAGTTGTGCTGTTGAATGTC 57.188 40.909 0.00 0.00 0.00 3.06
1945 1979 4.195416 TGTAGTTGTGCTGTTGAATGTCA 58.805 39.130 0.00 0.00 0.00 3.58
1946 1980 4.637977 TGTAGTTGTGCTGTTGAATGTCAA 59.362 37.500 0.00 0.00 33.32 3.18
1947 1981 4.717233 AGTTGTGCTGTTGAATGTCAAA 57.283 36.364 0.00 0.00 38.22 2.69
1948 1982 5.070770 AGTTGTGCTGTTGAATGTCAAAA 57.929 34.783 0.00 0.00 38.22 2.44
1949 1983 5.477510 AGTTGTGCTGTTGAATGTCAAAAA 58.522 33.333 0.00 0.00 38.22 1.94
1971 2005 5.914898 AAAAAGAAGTTAGGCTGTTGTGT 57.085 34.783 0.00 0.00 0.00 3.72
1972 2006 5.914898 AAAAGAAGTTAGGCTGTTGTGTT 57.085 34.783 0.00 0.00 0.00 3.32
1973 2007 5.500645 AAAGAAGTTAGGCTGTTGTGTTC 57.499 39.130 0.00 0.00 0.00 3.18
1974 2008 4.423625 AGAAGTTAGGCTGTTGTGTTCT 57.576 40.909 0.00 0.00 0.00 3.01
1975 2009 4.781934 AGAAGTTAGGCTGTTGTGTTCTT 58.218 39.130 0.00 0.00 0.00 2.52
1976 2010 4.816925 AGAAGTTAGGCTGTTGTGTTCTTC 59.183 41.667 0.00 0.00 0.00 2.87
1977 2011 3.131396 AGTTAGGCTGTTGTGTTCTTCG 58.869 45.455 0.00 0.00 0.00 3.79
1978 2012 2.870411 GTTAGGCTGTTGTGTTCTTCGT 59.130 45.455 0.00 0.00 0.00 3.85
1979 2013 2.038387 AGGCTGTTGTGTTCTTCGTT 57.962 45.000 0.00 0.00 0.00 3.85
1980 2014 3.188159 AGGCTGTTGTGTTCTTCGTTA 57.812 42.857 0.00 0.00 0.00 3.18
1981 2015 3.740115 AGGCTGTTGTGTTCTTCGTTAT 58.260 40.909 0.00 0.00 0.00 1.89
1982 2016 4.890088 AGGCTGTTGTGTTCTTCGTTATA 58.110 39.130 0.00 0.00 0.00 0.98
1983 2017 4.689345 AGGCTGTTGTGTTCTTCGTTATAC 59.311 41.667 0.00 0.00 0.00 1.47
1984 2018 4.689345 GGCTGTTGTGTTCTTCGTTATACT 59.311 41.667 0.00 0.00 0.00 2.12
1985 2019 5.178809 GGCTGTTGTGTTCTTCGTTATACTT 59.821 40.000 0.00 0.00 0.00 2.24
1986 2020 6.293244 GGCTGTTGTGTTCTTCGTTATACTTT 60.293 38.462 0.00 0.00 0.00 2.66
1987 2021 7.130269 GCTGTTGTGTTCTTCGTTATACTTTT 58.870 34.615 0.00 0.00 0.00 2.27
2552 2586 3.808984 CACTCCCTTGCTAATCCCC 57.191 57.895 0.00 0.00 0.00 4.81
2553 2587 0.918983 CACTCCCTTGCTAATCCCCA 59.081 55.000 0.00 0.00 0.00 4.96
2554 2588 1.496429 CACTCCCTTGCTAATCCCCAT 59.504 52.381 0.00 0.00 0.00 4.00
2555 2589 1.777272 ACTCCCTTGCTAATCCCCATC 59.223 52.381 0.00 0.00 0.00 3.51
2556 2590 1.776667 CTCCCTTGCTAATCCCCATCA 59.223 52.381 0.00 0.00 0.00 3.07
2557 2591 1.494721 TCCCTTGCTAATCCCCATCAC 59.505 52.381 0.00 0.00 0.00 3.06
2558 2592 1.496429 CCCTTGCTAATCCCCATCACT 59.504 52.381 0.00 0.00 0.00 3.41
2559 2593 2.579873 CCTTGCTAATCCCCATCACTG 58.420 52.381 0.00 0.00 0.00 3.66
2560 2594 1.952296 CTTGCTAATCCCCATCACTGC 59.048 52.381 0.00 0.00 0.00 4.40
2561 2595 0.918258 TGCTAATCCCCATCACTGCA 59.082 50.000 0.00 0.00 0.00 4.41
2562 2596 1.496001 TGCTAATCCCCATCACTGCAT 59.504 47.619 0.00 0.00 0.00 3.96
2563 2597 2.157738 GCTAATCCCCATCACTGCATC 58.842 52.381 0.00 0.00 0.00 3.91
2564 2598 2.224719 GCTAATCCCCATCACTGCATCT 60.225 50.000 0.00 0.00 0.00 2.90
2565 2599 3.749954 GCTAATCCCCATCACTGCATCTT 60.750 47.826 0.00 0.00 0.00 2.40
2566 2600 3.393426 AATCCCCATCACTGCATCTTT 57.607 42.857 0.00 0.00 0.00 2.52
2567 2601 2.133281 TCCCCATCACTGCATCTTTG 57.867 50.000 0.00 0.00 0.00 2.77
2568 2602 1.355381 TCCCCATCACTGCATCTTTGT 59.645 47.619 0.00 0.00 0.00 2.83
2569 2603 1.747355 CCCCATCACTGCATCTTTGTC 59.253 52.381 0.00 0.00 0.00 3.18
2570 2604 1.747355 CCCATCACTGCATCTTTGTCC 59.253 52.381 0.00 0.00 0.00 4.02
2571 2605 2.619849 CCCATCACTGCATCTTTGTCCT 60.620 50.000 0.00 0.00 0.00 3.85
2572 2606 3.087031 CCATCACTGCATCTTTGTCCTT 58.913 45.455 0.00 0.00 0.00 3.36
2573 2607 3.128242 CCATCACTGCATCTTTGTCCTTC 59.872 47.826 0.00 0.00 0.00 3.46
2574 2608 2.783135 TCACTGCATCTTTGTCCTTCC 58.217 47.619 0.00 0.00 0.00 3.46
2575 2609 2.106338 TCACTGCATCTTTGTCCTTCCA 59.894 45.455 0.00 0.00 0.00 3.53
2576 2610 2.227388 CACTGCATCTTTGTCCTTCCAC 59.773 50.000 0.00 0.00 0.00 4.02
2577 2611 1.466167 CTGCATCTTTGTCCTTCCACG 59.534 52.381 0.00 0.00 0.00 4.94
2578 2612 1.071542 TGCATCTTTGTCCTTCCACGA 59.928 47.619 0.00 0.00 0.00 4.35
2579 2613 2.290260 TGCATCTTTGTCCTTCCACGAT 60.290 45.455 0.00 0.00 0.00 3.73
2580 2614 2.352960 GCATCTTTGTCCTTCCACGATC 59.647 50.000 0.00 0.00 0.00 3.69
2581 2615 3.866651 CATCTTTGTCCTTCCACGATCT 58.133 45.455 0.00 0.00 0.00 2.75
2582 2616 3.594603 TCTTTGTCCTTCCACGATCTC 57.405 47.619 0.00 0.00 0.00 2.75
2583 2617 2.233922 TCTTTGTCCTTCCACGATCTCC 59.766 50.000 0.00 0.00 0.00 3.71
2584 2618 1.938585 TTGTCCTTCCACGATCTCCT 58.061 50.000 0.00 0.00 0.00 3.69
2585 2619 1.475403 TGTCCTTCCACGATCTCCTC 58.525 55.000 0.00 0.00 0.00 3.71
2586 2620 1.272480 TGTCCTTCCACGATCTCCTCA 60.272 52.381 0.00 0.00 0.00 3.86
2587 2621 2.035632 GTCCTTCCACGATCTCCTCAT 58.964 52.381 0.00 0.00 0.00 2.90
2588 2622 2.035321 GTCCTTCCACGATCTCCTCATC 59.965 54.545 0.00 0.00 0.00 2.92
2589 2623 2.091610 TCCTTCCACGATCTCCTCATCT 60.092 50.000 0.00 0.00 0.00 2.90
2590 2624 2.295909 CCTTCCACGATCTCCTCATCTC 59.704 54.545 0.00 0.00 0.00 2.75
2591 2625 3.221771 CTTCCACGATCTCCTCATCTCT 58.778 50.000 0.00 0.00 0.00 3.10
2592 2626 3.304911 TCCACGATCTCCTCATCTCTT 57.695 47.619 0.00 0.00 0.00 2.85
2593 2627 3.218453 TCCACGATCTCCTCATCTCTTC 58.782 50.000 0.00 0.00 0.00 2.87
2594 2628 2.295909 CCACGATCTCCTCATCTCTTCC 59.704 54.545 0.00 0.00 0.00 3.46
2595 2629 3.221771 CACGATCTCCTCATCTCTTCCT 58.778 50.000 0.00 0.00 0.00 3.36
2596 2630 3.636300 CACGATCTCCTCATCTCTTCCTT 59.364 47.826 0.00 0.00 0.00 3.36
2597 2631 3.888930 ACGATCTCCTCATCTCTTCCTTC 59.111 47.826 0.00 0.00 0.00 3.46
2598 2632 4.144297 CGATCTCCTCATCTCTTCCTTCT 58.856 47.826 0.00 0.00 0.00 2.85
2599 2633 4.584325 CGATCTCCTCATCTCTTCCTTCTT 59.416 45.833 0.00 0.00 0.00 2.52
2600 2634 5.068987 CGATCTCCTCATCTCTTCCTTCTTT 59.931 44.000 0.00 0.00 0.00 2.52
2601 2635 5.930837 TCTCCTCATCTCTTCCTTCTTTC 57.069 43.478 0.00 0.00 0.00 2.62
2602 2636 5.588845 TCTCCTCATCTCTTCCTTCTTTCT 58.411 41.667 0.00 0.00 0.00 2.52
2603 2637 6.736581 TCTCCTCATCTCTTCCTTCTTTCTA 58.263 40.000 0.00 0.00 0.00 2.10
2604 2638 6.833416 TCTCCTCATCTCTTCCTTCTTTCTAG 59.167 42.308 0.00 0.00 0.00 2.43
2605 2639 6.498538 TCCTCATCTCTTCCTTCTTTCTAGT 58.501 40.000 0.00 0.00 0.00 2.57
2606 2640 6.379703 TCCTCATCTCTTCCTTCTTTCTAGTG 59.620 42.308 0.00 0.00 0.00 2.74
2607 2641 6.406849 CCTCATCTCTTCCTTCTTTCTAGTGG 60.407 46.154 0.00 0.00 0.00 4.00
2608 2642 5.423610 TCATCTCTTCCTTCTTTCTAGTGGG 59.576 44.000 0.00 0.00 0.00 4.61
2609 2643 5.011982 TCTCTTCCTTCTTTCTAGTGGGA 57.988 43.478 0.00 0.00 0.00 4.37
2610 2644 5.594777 TCTCTTCCTTCTTTCTAGTGGGAT 58.405 41.667 0.00 0.00 0.00 3.85
2611 2645 6.026186 TCTCTTCCTTCTTTCTAGTGGGATT 58.974 40.000 0.00 0.00 0.00 3.01
2612 2646 6.155393 TCTCTTCCTTCTTTCTAGTGGGATTC 59.845 42.308 0.00 0.00 0.00 2.52
2613 2647 6.026186 TCTTCCTTCTTTCTAGTGGGATTCT 58.974 40.000 0.00 0.00 0.00 2.40
2614 2648 5.941555 TCCTTCTTTCTAGTGGGATTCTC 57.058 43.478 0.00 0.00 0.00 2.87
2615 2649 4.717280 TCCTTCTTTCTAGTGGGATTCTCC 59.283 45.833 0.00 0.00 35.23 3.71
2616 2650 4.471386 CCTTCTTTCTAGTGGGATTCTCCA 59.529 45.833 0.00 0.00 38.64 3.86
2625 2659 3.851458 TGGGATTCTCCACATCTCATG 57.149 47.619 0.00 0.00 38.64 3.07
2626 2660 2.158711 TGGGATTCTCCACATCTCATGC 60.159 50.000 0.00 0.00 38.64 4.06
2627 2661 2.106166 GGGATTCTCCACATCTCATGCT 59.894 50.000 0.00 0.00 38.64 3.79
2628 2662 3.434739 GGGATTCTCCACATCTCATGCTT 60.435 47.826 0.00 0.00 38.64 3.91
2629 2663 3.814283 GGATTCTCCACATCTCATGCTTC 59.186 47.826 0.00 0.00 36.28 3.86
2630 2664 4.444591 GGATTCTCCACATCTCATGCTTCT 60.445 45.833 0.00 0.00 36.28 2.85
2631 2665 4.564782 TTCTCCACATCTCATGCTTCTT 57.435 40.909 0.00 0.00 0.00 2.52
2632 2666 4.134379 TCTCCACATCTCATGCTTCTTC 57.866 45.455 0.00 0.00 0.00 2.87
2633 2667 3.773667 TCTCCACATCTCATGCTTCTTCT 59.226 43.478 0.00 0.00 0.00 2.85
2634 2668 4.121317 CTCCACATCTCATGCTTCTTCTC 58.879 47.826 0.00 0.00 0.00 2.87
2635 2669 3.118482 TCCACATCTCATGCTTCTTCTCC 60.118 47.826 0.00 0.00 0.00 3.71
2636 2670 3.118334 CCACATCTCATGCTTCTTCTCCT 60.118 47.826 0.00 0.00 0.00 3.69
2637 2671 4.100653 CCACATCTCATGCTTCTTCTCCTA 59.899 45.833 0.00 0.00 0.00 2.94
2638 2672 5.049167 CACATCTCATGCTTCTTCTCCTAC 58.951 45.833 0.00 0.00 0.00 3.18
2639 2673 4.961730 ACATCTCATGCTTCTTCTCCTACT 59.038 41.667 0.00 0.00 0.00 2.57
2640 2674 5.068987 ACATCTCATGCTTCTTCTCCTACTC 59.931 44.000 0.00 0.00 0.00 2.59
2641 2675 3.957497 TCTCATGCTTCTTCTCCTACTCC 59.043 47.826 0.00 0.00 0.00 3.85
2642 2676 3.703556 CTCATGCTTCTTCTCCTACTCCA 59.296 47.826 0.00 0.00 0.00 3.86
2643 2677 3.449018 TCATGCTTCTTCTCCTACTCCAC 59.551 47.826 0.00 0.00 0.00 4.02
2644 2678 2.180276 TGCTTCTTCTCCTACTCCACC 58.820 52.381 0.00 0.00 0.00 4.61
2645 2679 2.225394 TGCTTCTTCTCCTACTCCACCT 60.225 50.000 0.00 0.00 0.00 4.00
2646 2680 3.011369 TGCTTCTTCTCCTACTCCACCTA 59.989 47.826 0.00 0.00 0.00 3.08
2647 2681 3.634910 GCTTCTTCTCCTACTCCACCTAG 59.365 52.174 0.00 0.00 0.00 3.02
2648 2682 4.629204 GCTTCTTCTCCTACTCCACCTAGA 60.629 50.000 0.00 0.00 0.00 2.43
2649 2683 5.701224 CTTCTTCTCCTACTCCACCTAGAT 58.299 45.833 0.00 0.00 0.00 1.98
2650 2684 5.055265 TCTTCTCCTACTCCACCTAGATG 57.945 47.826 0.00 0.00 0.00 2.90
2651 2685 4.727332 TCTTCTCCTACTCCACCTAGATGA 59.273 45.833 0.00 0.00 0.00 2.92
2652 2686 5.193930 TCTTCTCCTACTCCACCTAGATGAA 59.806 44.000 0.00 0.00 0.00 2.57
2653 2687 5.467668 TCTCCTACTCCACCTAGATGAAA 57.532 43.478 0.00 0.00 0.00 2.69
2654 2688 5.450453 TCTCCTACTCCACCTAGATGAAAG 58.550 45.833 0.00 0.00 0.00 2.62
2655 2689 5.044030 TCTCCTACTCCACCTAGATGAAAGT 60.044 44.000 0.00 0.00 0.00 2.66
2656 2690 4.956700 TCCTACTCCACCTAGATGAAAGTG 59.043 45.833 3.10 0.00 0.00 3.16
2657 2691 3.618690 ACTCCACCTAGATGAAAGTGC 57.381 47.619 0.00 0.00 0.00 4.40
2658 2692 2.906389 ACTCCACCTAGATGAAAGTGCA 59.094 45.455 0.00 0.00 0.00 4.57
2659 2693 3.055530 ACTCCACCTAGATGAAAGTGCAG 60.056 47.826 0.00 0.00 0.00 4.41
2660 2694 2.237143 TCCACCTAGATGAAAGTGCAGG 59.763 50.000 0.00 0.00 0.00 4.85
2661 2695 2.237143 CCACCTAGATGAAAGTGCAGGA 59.763 50.000 0.00 0.00 0.00 3.86
2662 2696 3.307691 CCACCTAGATGAAAGTGCAGGAA 60.308 47.826 0.00 0.00 0.00 3.36
2663 2697 3.937706 CACCTAGATGAAAGTGCAGGAAG 59.062 47.826 0.00 0.00 0.00 3.46
2664 2698 3.840666 ACCTAGATGAAAGTGCAGGAAGA 59.159 43.478 0.00 0.00 0.00 2.87
2665 2699 4.472833 ACCTAGATGAAAGTGCAGGAAGAT 59.527 41.667 0.00 0.00 0.00 2.40
2666 2700 5.055812 CCTAGATGAAAGTGCAGGAAGATC 58.944 45.833 0.00 0.00 0.00 2.75
2667 2701 4.840716 AGATGAAAGTGCAGGAAGATCT 57.159 40.909 0.00 0.00 0.00 2.75
2668 2702 4.768583 AGATGAAAGTGCAGGAAGATCTC 58.231 43.478 0.00 0.00 0.00 2.75
2669 2703 4.224594 AGATGAAAGTGCAGGAAGATCTCA 59.775 41.667 0.00 0.00 0.00 3.27
2670 2704 4.564782 TGAAAGTGCAGGAAGATCTCAT 57.435 40.909 0.00 0.00 0.00 2.90
2671 2705 4.259356 TGAAAGTGCAGGAAGATCTCATG 58.741 43.478 0.00 0.00 38.91 3.07
2672 2706 4.019950 TGAAAGTGCAGGAAGATCTCATGA 60.020 41.667 0.00 0.00 38.11 3.07
2673 2707 3.540314 AGTGCAGGAAGATCTCATGAC 57.460 47.619 0.00 0.00 38.11 3.06
2674 2708 3.106054 AGTGCAGGAAGATCTCATGACT 58.894 45.455 0.00 1.96 38.11 3.41
2675 2709 3.132646 AGTGCAGGAAGATCTCATGACTC 59.867 47.826 0.00 0.00 38.11 3.36
2676 2710 3.102204 TGCAGGAAGATCTCATGACTCA 58.898 45.455 0.00 0.00 38.11 3.41
2677 2711 3.710165 TGCAGGAAGATCTCATGACTCAT 59.290 43.478 0.00 0.00 38.11 2.90
2678 2712 4.059511 GCAGGAAGATCTCATGACTCATG 58.940 47.826 12.25 12.25 42.60 3.07
2679 2713 4.633175 CAGGAAGATCTCATGACTCATGG 58.367 47.826 17.33 9.42 41.66 3.66
2680 2714 4.344390 CAGGAAGATCTCATGACTCATGGA 59.656 45.833 17.33 13.66 41.66 3.41
2681 2715 5.012251 CAGGAAGATCTCATGACTCATGGAT 59.988 44.000 17.33 16.96 41.66 3.41
2682 2716 5.246656 AGGAAGATCTCATGACTCATGGATC 59.753 44.000 25.24 25.24 42.23 3.36
2683 2717 5.011840 GGAAGATCTCATGACTCATGGATCA 59.988 44.000 29.26 12.36 43.12 2.92
2684 2718 6.295973 GGAAGATCTCATGACTCATGGATCAT 60.296 42.308 29.26 24.15 43.12 2.45
2685 2719 6.288941 AGATCTCATGACTCATGGATCATC 57.711 41.667 29.26 20.42 43.12 2.92
2686 2720 6.020389 AGATCTCATGACTCATGGATCATCT 58.980 40.000 29.26 21.53 43.12 2.90
2687 2721 6.499000 AGATCTCATGACTCATGGATCATCTT 59.501 38.462 29.26 18.03 43.12 2.40
2688 2722 5.855045 TCTCATGACTCATGGATCATCTTG 58.145 41.667 17.33 2.57 41.66 3.02
2689 2723 5.601313 TCTCATGACTCATGGATCATCTTGA 59.399 40.000 17.33 5.95 41.66 3.02
2690 2724 6.099269 TCTCATGACTCATGGATCATCTTGAA 59.901 38.462 17.33 0.00 41.66 2.69
2691 2725 6.289064 TCATGACTCATGGATCATCTTGAAG 58.711 40.000 17.33 0.00 41.66 3.02
2692 2726 4.449131 TGACTCATGGATCATCTTGAAGC 58.551 43.478 0.00 0.00 0.00 3.86
2693 2727 4.163649 TGACTCATGGATCATCTTGAAGCT 59.836 41.667 0.00 0.00 0.00 3.74
2694 2728 4.706035 ACTCATGGATCATCTTGAAGCTC 58.294 43.478 0.00 0.00 0.00 4.09
2695 2729 3.725490 TCATGGATCATCTTGAAGCTCG 58.275 45.455 0.00 0.00 0.00 5.03
2696 2730 3.385755 TCATGGATCATCTTGAAGCTCGA 59.614 43.478 0.00 0.00 0.00 4.04
2697 2731 3.449528 TGGATCATCTTGAAGCTCGAG 57.550 47.619 8.45 8.45 0.00 4.04
2698 2732 2.102084 TGGATCATCTTGAAGCTCGAGG 59.898 50.000 15.58 0.00 0.00 4.63
2699 2733 2.102252 GGATCATCTTGAAGCTCGAGGT 59.898 50.000 12.24 12.24 0.00 3.85
2700 2734 2.662006 TCATCTTGAAGCTCGAGGTG 57.338 50.000 19.39 5.57 39.78 4.00
2701 2735 1.205655 TCATCTTGAAGCTCGAGGTGG 59.794 52.381 19.39 9.09 39.09 4.61
2702 2736 1.066573 CATCTTGAAGCTCGAGGTGGT 60.067 52.381 19.39 2.61 35.75 4.16
2703 2737 0.603569 TCTTGAAGCTCGAGGTGGTC 59.396 55.000 19.39 13.44 0.00 4.02
2704 2738 0.390472 CTTGAAGCTCGAGGTGGTCC 60.390 60.000 19.39 8.57 0.00 4.46
2705 2739 1.827399 TTGAAGCTCGAGGTGGTCCC 61.827 60.000 19.39 6.14 0.00 4.46
2706 2740 2.203788 AAGCTCGAGGTGGTCCCA 60.204 61.111 19.39 0.00 34.66 4.37
2707 2741 2.508586 GAAGCTCGAGGTGGTCCCAC 62.509 65.000 19.39 7.98 45.49 4.61
2715 2749 3.118454 GTGGTCCCACATGCGTCG 61.118 66.667 11.57 0.00 45.53 5.12
2716 2750 3.307108 TGGTCCCACATGCGTCGA 61.307 61.111 0.00 0.00 0.00 4.20
2717 2751 2.509336 GGTCCCACATGCGTCGAG 60.509 66.667 0.00 0.00 0.00 4.04
2727 2761 2.358247 GCGTCGAGCTTGGGGAAA 60.358 61.111 0.00 0.00 44.04 3.13
2728 2762 1.964373 GCGTCGAGCTTGGGGAAAA 60.964 57.895 0.00 0.00 44.04 2.29
2729 2763 1.305930 GCGTCGAGCTTGGGGAAAAT 61.306 55.000 0.00 0.00 44.04 1.82
2730 2764 0.447801 CGTCGAGCTTGGGGAAAATG 59.552 55.000 0.00 0.00 0.00 2.32
2731 2765 1.821216 GTCGAGCTTGGGGAAAATGA 58.179 50.000 0.00 0.00 0.00 2.57
2732 2766 1.468914 GTCGAGCTTGGGGAAAATGAC 59.531 52.381 0.00 0.00 0.00 3.06
2733 2767 0.447801 CGAGCTTGGGGAAAATGACG 59.552 55.000 0.00 0.00 0.00 4.35
2734 2768 0.171231 GAGCTTGGGGAAAATGACGC 59.829 55.000 0.00 0.00 0.00 5.19
2735 2769 1.215382 GCTTGGGGAAAATGACGCC 59.785 57.895 0.00 0.00 40.13 5.68
2736 2770 1.890174 CTTGGGGAAAATGACGCCC 59.110 57.895 0.00 0.00 41.28 6.13
2737 2771 0.897863 CTTGGGGAAAATGACGCCCA 60.898 55.000 0.00 0.00 43.89 5.36
2738 2772 0.470080 TTGGGGAAAATGACGCCCAA 60.470 50.000 0.00 0.00 43.89 4.12
2739 2773 0.897863 TGGGGAAAATGACGCCCAAG 60.898 55.000 0.00 0.00 43.89 3.61
2740 2774 1.604147 GGGGAAAATGACGCCCAAGG 61.604 60.000 0.00 0.00 43.89 3.61
2741 2775 1.604147 GGGAAAATGACGCCCAAGGG 61.604 60.000 0.00 0.00 41.64 3.95
2742 2776 0.898326 GGAAAATGACGCCCAAGGGT 60.898 55.000 7.05 0.00 42.82 4.34
2760 2794 3.248764 GGATGGATCCAGGCAGCT 58.751 61.111 21.33 1.01 46.38 4.24
2761 2795 1.072852 GGATGGATCCAGGCAGCTC 59.927 63.158 21.33 11.29 46.38 4.09
2762 2796 1.703014 GGATGGATCCAGGCAGCTCA 61.703 60.000 21.33 0.00 46.38 4.26
2763 2797 0.534652 GATGGATCCAGGCAGCTCAC 60.535 60.000 21.33 0.00 0.00 3.51
2764 2798 1.276859 ATGGATCCAGGCAGCTCACA 61.277 55.000 21.33 0.00 0.00 3.58
2765 2799 1.276859 TGGATCCAGGCAGCTCACAT 61.277 55.000 11.44 0.00 0.00 3.21
2766 2800 0.818445 GGATCCAGGCAGCTCACATG 60.818 60.000 6.95 0.00 0.00 3.21
2767 2801 0.107312 GATCCAGGCAGCTCACATGT 60.107 55.000 0.00 0.00 0.00 3.21
2768 2802 0.330604 ATCCAGGCAGCTCACATGTT 59.669 50.000 0.00 0.00 0.00 2.71
2769 2803 0.607217 TCCAGGCAGCTCACATGTTG 60.607 55.000 0.00 0.00 0.00 3.33
2770 2804 0.607217 CCAGGCAGCTCACATGTTGA 60.607 55.000 0.00 0.00 0.00 3.18
2771 2805 1.460504 CAGGCAGCTCACATGTTGAT 58.539 50.000 0.00 0.00 32.17 2.57
2772 2806 2.635714 CAGGCAGCTCACATGTTGATA 58.364 47.619 0.00 0.00 32.17 2.15
2773 2807 2.612672 CAGGCAGCTCACATGTTGATAG 59.387 50.000 0.00 0.00 32.17 2.08
2774 2808 2.238144 AGGCAGCTCACATGTTGATAGT 59.762 45.455 0.00 0.00 32.17 2.12
2775 2809 3.012518 GGCAGCTCACATGTTGATAGTT 58.987 45.455 0.00 0.00 32.17 2.24
2776 2810 3.441572 GGCAGCTCACATGTTGATAGTTT 59.558 43.478 0.00 0.00 32.17 2.66
2777 2811 4.082571 GGCAGCTCACATGTTGATAGTTTT 60.083 41.667 0.00 0.00 32.17 2.43
2778 2812 5.464168 GCAGCTCACATGTTGATAGTTTTT 58.536 37.500 0.00 0.00 32.17 1.94
2808 2842 9.297037 ACACCATCTTATATTAATTAACCAGCC 57.703 33.333 0.00 0.00 0.00 4.85
2809 2843 9.295825 CACCATCTTATATTAATTAACCAGCCA 57.704 33.333 0.00 0.00 0.00 4.75
2810 2844 9.297037 ACCATCTTATATTAATTAACCAGCCAC 57.703 33.333 0.00 0.00 0.00 5.01
2811 2845 9.295825 CCATCTTATATTAATTAACCAGCCACA 57.704 33.333 0.00 0.00 0.00 4.17
2813 2847 8.685838 TCTTATATTAATTAACCAGCCACACC 57.314 34.615 0.00 0.00 0.00 4.16
2814 2848 8.275758 TCTTATATTAATTAACCAGCCACACCA 58.724 33.333 0.00 0.00 0.00 4.17
2815 2849 6.959639 ATATTAATTAACCAGCCACACCAG 57.040 37.500 0.00 0.00 0.00 4.00
2816 2850 2.675658 AATTAACCAGCCACACCAGT 57.324 45.000 0.00 0.00 0.00 4.00
2817 2851 3.799432 AATTAACCAGCCACACCAGTA 57.201 42.857 0.00 0.00 0.00 2.74
2818 2852 2.554370 TTAACCAGCCACACCAGTAC 57.446 50.000 0.00 0.00 0.00 2.73
2819 2853 1.425694 TAACCAGCCACACCAGTACA 58.574 50.000 0.00 0.00 0.00 2.90
2820 2854 0.179029 AACCAGCCACACCAGTACAC 60.179 55.000 0.00 0.00 0.00 2.90
2821 2855 1.054406 ACCAGCCACACCAGTACACT 61.054 55.000 0.00 0.00 0.00 3.55
2822 2856 0.320771 CCAGCCACACCAGTACACTC 60.321 60.000 0.00 0.00 0.00 3.51
2823 2857 0.392706 CAGCCACACCAGTACACTCA 59.607 55.000 0.00 0.00 0.00 3.41
2824 2858 1.002430 CAGCCACACCAGTACACTCAT 59.998 52.381 0.00 0.00 0.00 2.90
2825 2859 1.699634 AGCCACACCAGTACACTCATT 59.300 47.619 0.00 0.00 0.00 2.57
2826 2860 2.076863 GCCACACCAGTACACTCATTC 58.923 52.381 0.00 0.00 0.00 2.67
2827 2861 2.337583 CCACACCAGTACACTCATTCG 58.662 52.381 0.00 0.00 0.00 3.34
2828 2862 2.029380 CCACACCAGTACACTCATTCGA 60.029 50.000 0.00 0.00 0.00 3.71
2829 2863 3.368427 CCACACCAGTACACTCATTCGAT 60.368 47.826 0.00 0.00 0.00 3.59
2830 2864 4.142249 CCACACCAGTACACTCATTCGATA 60.142 45.833 0.00 0.00 0.00 2.92
2831 2865 4.798907 CACACCAGTACACTCATTCGATAC 59.201 45.833 0.00 0.00 0.00 2.24
2832 2866 4.461431 ACACCAGTACACTCATTCGATACA 59.539 41.667 0.00 0.00 0.00 2.29
2833 2867 5.047590 ACACCAGTACACTCATTCGATACAA 60.048 40.000 0.00 0.00 0.00 2.41
2834 2868 6.042777 CACCAGTACACTCATTCGATACAAT 58.957 40.000 0.00 0.00 0.00 2.71
2835 2869 7.147966 ACACCAGTACACTCATTCGATACAATA 60.148 37.037 0.00 0.00 0.00 1.90
2836 2870 7.867909 CACCAGTACACTCATTCGATACAATAT 59.132 37.037 0.00 0.00 0.00 1.28
2837 2871 8.421784 ACCAGTACACTCATTCGATACAATATT 58.578 33.333 0.00 0.00 0.00 1.28
2838 2872 8.916654 CCAGTACACTCATTCGATACAATATTC 58.083 37.037 0.00 0.00 0.00 1.75
2839 2873 9.463443 CAGTACACTCATTCGATACAATATTCA 57.537 33.333 0.00 0.00 0.00 2.57
2840 2874 9.464714 AGTACACTCATTCGATACAATATTCAC 57.535 33.333 0.00 0.00 0.00 3.18
2841 2875 7.715265 ACACTCATTCGATACAATATTCACC 57.285 36.000 0.00 0.00 0.00 4.02
2842 2876 7.272244 ACACTCATTCGATACAATATTCACCA 58.728 34.615 0.00 0.00 0.00 4.17
2843 2877 7.224753 ACACTCATTCGATACAATATTCACCAC 59.775 37.037 0.00 0.00 0.00 4.16
2844 2878 7.224557 CACTCATTCGATACAATATTCACCACA 59.775 37.037 0.00 0.00 0.00 4.17
2845 2879 7.224753 ACTCATTCGATACAATATTCACCACAC 59.775 37.037 0.00 0.00 0.00 3.82
2846 2880 7.044798 TCATTCGATACAATATTCACCACACA 58.955 34.615 0.00 0.00 0.00 3.72
2847 2881 6.902224 TTCGATACAATATTCACCACACAG 57.098 37.500 0.00 0.00 0.00 3.66
2848 2882 5.356426 TCGATACAATATTCACCACACAGG 58.644 41.667 0.00 0.00 45.67 4.00
2849 2883 4.511454 CGATACAATATTCACCACACAGGG 59.489 45.833 0.00 0.00 43.89 4.45
2850 2884 2.446435 ACAATATTCACCACACAGGGC 58.554 47.619 0.00 0.00 43.89 5.19
2851 2885 1.401552 CAATATTCACCACACAGGGCG 59.598 52.381 0.00 0.00 43.89 6.13
2852 2886 0.107214 ATATTCACCACACAGGGCGG 60.107 55.000 0.00 0.00 43.89 6.13
2853 2887 1.485294 TATTCACCACACAGGGCGGT 61.485 55.000 0.00 0.00 43.89 5.68
2854 2888 1.485294 ATTCACCACACAGGGCGGTA 61.485 55.000 0.00 0.00 43.89 4.02
2855 2889 2.358247 CACCACACAGGGCGGTAC 60.358 66.667 0.00 0.00 43.89 3.34
2856 2890 2.845317 ACCACACAGGGCGGTACA 60.845 61.111 0.00 0.00 43.89 2.90
2857 2891 2.221299 ACCACACAGGGCGGTACAT 61.221 57.895 0.00 0.00 43.89 2.29
2858 2892 1.449601 CCACACAGGGCGGTACATC 60.450 63.158 0.00 0.00 0.00 3.06
2859 2893 1.295101 CACACAGGGCGGTACATCA 59.705 57.895 0.00 0.00 0.00 3.07
2860 2894 0.107703 CACACAGGGCGGTACATCAT 60.108 55.000 0.00 0.00 0.00 2.45
2861 2895 0.618458 ACACAGGGCGGTACATCATT 59.382 50.000 0.00 0.00 0.00 2.57
2862 2896 1.004277 ACACAGGGCGGTACATCATTT 59.996 47.619 0.00 0.00 0.00 2.32
2863 2897 2.237643 ACACAGGGCGGTACATCATTTA 59.762 45.455 0.00 0.00 0.00 1.40
2864 2898 2.612212 CACAGGGCGGTACATCATTTAC 59.388 50.000 0.00 0.00 0.00 2.01
2865 2899 2.237643 ACAGGGCGGTACATCATTTACA 59.762 45.455 0.00 0.00 0.00 2.41
2866 2900 3.275143 CAGGGCGGTACATCATTTACAA 58.725 45.455 0.00 0.00 0.00 2.41
2867 2901 3.312421 CAGGGCGGTACATCATTTACAAG 59.688 47.826 0.00 0.00 0.00 3.16
2868 2902 3.199071 AGGGCGGTACATCATTTACAAGA 59.801 43.478 0.00 0.00 0.00 3.02
2869 2903 3.942748 GGGCGGTACATCATTTACAAGAA 59.057 43.478 0.00 0.00 0.00 2.52
2870 2904 4.578928 GGGCGGTACATCATTTACAAGAAT 59.421 41.667 0.00 0.00 0.00 2.40
2871 2905 5.761234 GGGCGGTACATCATTTACAAGAATA 59.239 40.000 0.00 0.00 0.00 1.75
2872 2906 6.293244 GGGCGGTACATCATTTACAAGAATAC 60.293 42.308 0.00 0.00 0.00 1.89
2873 2907 6.293244 GGCGGTACATCATTTACAAGAATACC 60.293 42.308 0.00 0.00 0.00 2.73
2874 2908 6.259167 GCGGTACATCATTTACAAGAATACCA 59.741 38.462 0.00 0.00 32.89 3.25
2875 2909 7.041372 GCGGTACATCATTTACAAGAATACCAT 60.041 37.037 0.00 0.00 32.89 3.55
2876 2910 8.495949 CGGTACATCATTTACAAGAATACCATC 58.504 37.037 0.00 0.00 32.89 3.51
2877 2911 9.561069 GGTACATCATTTACAAGAATACCATCT 57.439 33.333 0.00 0.00 33.25 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 0.110688 CCACTGATGACGCACGTTTG 60.111 55.000 0.00 0.00 0.00 2.93
18 19 2.738521 GCCACTGATGACGCACGT 60.739 61.111 0.00 0.00 0.00 4.49
82 83 0.317160 CGTACTTGACAGACAGGCCA 59.683 55.000 5.01 0.00 0.00 5.36
91 92 1.674441 CCGGCTATCTCGTACTTGACA 59.326 52.381 0.00 0.00 0.00 3.58
201 202 2.278738 CCCCAGGGGTACAATGGC 59.721 66.667 18.09 0.00 38.25 4.40
256 260 4.409247 GTGTAATCTCTATGGGGGTGAACT 59.591 45.833 0.00 0.00 0.00 3.01
262 266 3.967326 TCTGTGTGTAATCTCTATGGGGG 59.033 47.826 0.00 0.00 0.00 5.40
283 296 3.557264 GGCTAGCTCTACTCCTCTCTCTC 60.557 56.522 15.72 0.00 0.00 3.20
404 425 2.168496 GGGCTCTCTTTTTAACACCCC 58.832 52.381 0.00 0.00 0.00 4.95
408 429 3.143728 GTTCGGGGCTCTCTTTTTAACA 58.856 45.455 0.00 0.00 0.00 2.41
409 430 2.486982 GGTTCGGGGCTCTCTTTTTAAC 59.513 50.000 0.00 0.00 0.00 2.01
410 431 2.374170 AGGTTCGGGGCTCTCTTTTTAA 59.626 45.455 0.00 0.00 0.00 1.52
412 433 0.771755 AGGTTCGGGGCTCTCTTTTT 59.228 50.000 0.00 0.00 0.00 1.94
414 435 0.836400 TCAGGTTCGGGGCTCTCTTT 60.836 55.000 0.00 0.00 0.00 2.52
416 437 1.684049 CTCAGGTTCGGGGCTCTCT 60.684 63.158 0.00 0.00 0.00 3.10
433 459 0.248377 GTACGCCGACGCATCTTACT 60.248 55.000 0.00 0.00 45.53 2.24
505 531 3.005155 GCCAAAGGATGACTTATCATGGC 59.995 47.826 11.89 11.89 46.01 4.40
516 542 4.002982 GTGCGATATATGCCAAAGGATGA 58.997 43.478 0.00 0.00 0.00 2.92
532 558 3.144871 TCGGGGATGTCGTGCGAT 61.145 61.111 0.00 0.00 0.00 4.58
543 569 1.480954 GCTCATAACTTCTGTCGGGGA 59.519 52.381 0.00 0.00 0.00 4.81
552 578 1.584308 GACGCGACTGCTCATAACTTC 59.416 52.381 15.93 0.00 39.65 3.01
553 579 1.630148 GACGCGACTGCTCATAACTT 58.370 50.000 15.93 0.00 39.65 2.66
554 580 0.523546 CGACGCGACTGCTCATAACT 60.524 55.000 15.93 0.00 39.65 2.24
555 581 0.797249 ACGACGCGACTGCTCATAAC 60.797 55.000 15.93 0.00 39.65 1.89
556 582 0.522705 GACGACGCGACTGCTCATAA 60.523 55.000 15.93 0.00 39.65 1.90
557 583 1.062047 GACGACGCGACTGCTCATA 59.938 57.895 15.93 0.00 39.65 2.15
558 584 2.202492 GACGACGCGACTGCTCAT 60.202 61.111 15.93 0.00 39.65 2.90
559 585 3.310253 GAGACGACGCGACTGCTCA 62.310 63.158 15.93 0.00 39.65 4.26
560 586 2.574736 GAGACGACGCGACTGCTC 60.575 66.667 15.93 12.30 39.65 4.26
561 587 4.104417 GGAGACGACGCGACTGCT 62.104 66.667 15.93 6.42 37.11 4.24
573 599 4.388499 TTGGGAAGCGCGGGAGAC 62.388 66.667 8.83 0.00 0.00 3.36
574 600 4.082523 CTTGGGAAGCGCGGGAGA 62.083 66.667 8.83 0.00 0.00 3.71
582 608 3.741476 CTGCACGCCTTGGGAAGC 61.741 66.667 0.00 0.00 0.00 3.86
583 609 2.032528 TCTGCACGCCTTGGGAAG 59.967 61.111 0.00 0.00 0.00 3.46
584 610 2.281484 GTCTGCACGCCTTGGGAA 60.281 61.111 0.00 0.00 0.00 3.97
585 611 4.680237 CGTCTGCACGCCTTGGGA 62.680 66.667 0.00 0.00 39.69 4.37
608 634 4.829518 TCGCTCGATCCACGCGTG 62.830 66.667 31.77 31.77 46.31 5.34
609 635 4.538283 CTCGCTCGATCCACGCGT 62.538 66.667 5.58 5.58 46.31 6.01
611 637 4.560856 AGCTCGCTCGATCCACGC 62.561 66.667 0.00 0.00 42.26 5.34
612 638 2.103143 AAGCTCGCTCGATCCACG 59.897 61.111 0.00 0.00 44.09 4.94
613 639 1.139734 TCAAGCTCGCTCGATCCAC 59.860 57.895 0.00 0.00 0.00 4.02
614 640 1.139734 GTCAAGCTCGCTCGATCCA 59.860 57.895 0.00 0.00 0.00 3.41
615 641 0.593773 GAGTCAAGCTCGCTCGATCC 60.594 60.000 0.00 0.00 34.13 3.36
616 642 2.866688 GAGTCAAGCTCGCTCGATC 58.133 57.895 0.00 0.00 34.13 3.69
645 671 2.005451 CTGAAGGAACGGCTGAATCAG 58.995 52.381 5.78 5.78 34.12 2.90
646 672 1.623311 TCTGAAGGAACGGCTGAATCA 59.377 47.619 0.00 0.00 0.00 2.57
647 673 2.275318 CTCTGAAGGAACGGCTGAATC 58.725 52.381 0.00 0.00 0.00 2.52
648 674 1.677217 GCTCTGAAGGAACGGCTGAAT 60.677 52.381 0.00 0.00 0.00 2.57
649 675 0.320771 GCTCTGAAGGAACGGCTGAA 60.321 55.000 0.00 0.00 0.00 3.02
650 676 1.293498 GCTCTGAAGGAACGGCTGA 59.707 57.895 0.00 0.00 0.00 4.26
651 677 1.743252 GGCTCTGAAGGAACGGCTG 60.743 63.158 0.00 0.00 0.00 4.85
652 678 2.177594 CTGGCTCTGAAGGAACGGCT 62.178 60.000 0.00 0.00 0.00 5.52
653 679 1.743252 CTGGCTCTGAAGGAACGGC 60.743 63.158 0.00 0.00 0.00 5.68
654 680 1.078848 CCTGGCTCTGAAGGAACGG 60.079 63.158 0.00 0.00 35.40 4.44
655 681 1.743252 GCCTGGCTCTGAAGGAACG 60.743 63.158 12.43 0.00 35.40 3.95
656 682 1.377856 GGCCTGGCTCTGAAGGAAC 60.378 63.158 19.68 0.00 35.40 3.62
657 683 2.606587 GGGCCTGGCTCTGAAGGAA 61.607 63.158 19.68 0.00 35.40 3.36
658 684 3.011517 GGGCCTGGCTCTGAAGGA 61.012 66.667 19.68 0.00 35.40 3.36
659 685 3.333219 TGGGCCTGGCTCTGAAGG 61.333 66.667 21.13 0.00 36.58 3.46
660 686 2.271497 CTGGGCCTGGCTCTGAAG 59.729 66.667 21.13 4.91 29.21 3.02
661 687 2.203983 TCTGGGCCTGGCTCTGAA 60.204 61.111 23.87 9.18 34.20 3.02
662 688 3.005539 GTCTGGGCCTGGCTCTGA 61.006 66.667 22.53 22.53 34.72 3.27
663 689 4.106925 GGTCTGGGCCTGGCTCTG 62.107 72.222 21.13 19.73 0.00 3.35
664 690 4.345286 AGGTCTGGGCCTGGCTCT 62.345 66.667 21.13 7.50 37.50 4.09
670 696 0.329596 CTTAAAGCAGGTCTGGGCCT 59.670 55.000 4.53 0.00 39.99 5.19
671 697 0.681243 CCTTAAAGCAGGTCTGGGCC 60.681 60.000 0.00 0.00 0.00 5.80
672 698 0.038310 ACCTTAAAGCAGGTCTGGGC 59.962 55.000 0.00 0.00 44.63 5.36
679 705 1.197721 CTGCACGAACCTTAAAGCAGG 59.802 52.381 0.00 0.00 44.10 4.85
680 706 1.197721 CCTGCACGAACCTTAAAGCAG 59.802 52.381 0.00 0.00 46.55 4.24
681 707 1.234821 CCTGCACGAACCTTAAAGCA 58.765 50.000 0.00 0.00 0.00 3.91
682 708 1.197036 GACCTGCACGAACCTTAAAGC 59.803 52.381 0.00 0.00 0.00 3.51
683 709 2.223377 GTGACCTGCACGAACCTTAAAG 59.777 50.000 0.00 0.00 37.83 1.85
684 710 2.215196 GTGACCTGCACGAACCTTAAA 58.785 47.619 0.00 0.00 37.83 1.52
685 711 1.873698 GTGACCTGCACGAACCTTAA 58.126 50.000 0.00 0.00 37.83 1.85
686 712 3.599412 GTGACCTGCACGAACCTTA 57.401 52.632 0.00 0.00 37.83 2.69
687 713 4.456806 GTGACCTGCACGAACCTT 57.543 55.556 0.00 0.00 37.83 3.50
694 720 1.131126 CATCCAATTCGTGACCTGCAC 59.869 52.381 0.00 0.00 44.21 4.57
695 721 1.452110 CATCCAATTCGTGACCTGCA 58.548 50.000 0.00 0.00 0.00 4.41
696 722 0.099436 GCATCCAATTCGTGACCTGC 59.901 55.000 0.00 0.00 0.00 4.85
697 723 0.374758 CGCATCCAATTCGTGACCTG 59.625 55.000 0.00 0.00 0.00 4.00
698 724 0.249120 TCGCATCCAATTCGTGACCT 59.751 50.000 0.00 0.00 0.00 3.85
699 725 1.261619 GATCGCATCCAATTCGTGACC 59.738 52.381 0.00 0.00 0.00 4.02
700 726 2.652662 GATCGCATCCAATTCGTGAC 57.347 50.000 0.00 0.00 0.00 3.67
711 737 1.737838 TTGGTTGTCTGGATCGCATC 58.262 50.000 0.00 0.00 0.00 3.91
712 738 1.812571 GTTTGGTTGTCTGGATCGCAT 59.187 47.619 0.00 0.00 0.00 4.73
713 739 1.234821 GTTTGGTTGTCTGGATCGCA 58.765 50.000 0.00 0.00 0.00 5.10
714 740 0.165944 CGTTTGGTTGTCTGGATCGC 59.834 55.000 0.00 0.00 0.00 4.58
715 741 0.796312 CCGTTTGGTTGTCTGGATCG 59.204 55.000 0.00 0.00 0.00 3.69
716 742 1.804748 GTCCGTTTGGTTGTCTGGATC 59.195 52.381 0.00 0.00 36.30 3.36
717 743 1.420138 AGTCCGTTTGGTTGTCTGGAT 59.580 47.619 0.00 0.00 36.30 3.41
718 744 0.834612 AGTCCGTTTGGTTGTCTGGA 59.165 50.000 0.00 0.00 36.30 3.86
719 745 2.036733 TCTAGTCCGTTTGGTTGTCTGG 59.963 50.000 0.00 0.00 36.30 3.86
720 746 3.380479 TCTAGTCCGTTTGGTTGTCTG 57.620 47.619 0.00 0.00 36.30 3.51
721 747 4.283722 AGAATCTAGTCCGTTTGGTTGTCT 59.716 41.667 0.00 0.00 36.30 3.41
722 748 4.566987 AGAATCTAGTCCGTTTGGTTGTC 58.433 43.478 0.00 0.00 36.30 3.18
723 749 4.618920 AGAATCTAGTCCGTTTGGTTGT 57.381 40.909 0.00 0.00 36.30 3.32
724 750 4.392138 GGAAGAATCTAGTCCGTTTGGTTG 59.608 45.833 0.00 0.00 36.30 3.77
725 751 4.565028 GGGAAGAATCTAGTCCGTTTGGTT 60.565 45.833 0.00 0.00 36.30 3.67
726 752 3.055312 GGGAAGAATCTAGTCCGTTTGGT 60.055 47.826 0.00 0.00 36.30 3.67
727 753 3.532542 GGGAAGAATCTAGTCCGTTTGG 58.467 50.000 0.00 0.00 31.73 3.28
728 754 3.187700 CGGGAAGAATCTAGTCCGTTTG 58.812 50.000 9.57 0.00 33.63 2.93
729 755 2.418334 GCGGGAAGAATCTAGTCCGTTT 60.418 50.000 16.05 0.00 39.64 3.60
730 756 1.136500 GCGGGAAGAATCTAGTCCGTT 59.864 52.381 16.05 0.00 39.64 4.44
731 757 0.745468 GCGGGAAGAATCTAGTCCGT 59.255 55.000 16.05 0.00 39.64 4.69
732 758 0.317938 CGCGGGAAGAATCTAGTCCG 60.318 60.000 0.00 12.30 40.33 4.79
733 759 0.745468 ACGCGGGAAGAATCTAGTCC 59.255 55.000 12.47 0.00 0.00 3.85
734 760 1.536284 CCACGCGGGAAGAATCTAGTC 60.536 57.143 11.66 0.00 40.01 2.59
735 761 0.460311 CCACGCGGGAAGAATCTAGT 59.540 55.000 11.66 0.00 40.01 2.57
736 762 0.876342 GCCACGCGGGAAGAATCTAG 60.876 60.000 11.66 0.00 40.01 2.43
737 763 1.143183 GCCACGCGGGAAGAATCTA 59.857 57.895 11.66 0.00 40.01 1.98
738 764 2.125106 GCCACGCGGGAAGAATCT 60.125 61.111 11.66 0.00 40.01 2.40
739 765 3.202706 GGCCACGCGGGAAGAATC 61.203 66.667 11.66 0.00 40.01 2.52
740 766 4.796495 GGGCCACGCGGGAAGAAT 62.796 66.667 11.66 0.00 40.01 2.40
748 774 4.524318 ATTAGGTCGGGCCACGCG 62.524 66.667 3.53 3.53 43.86 6.01
749 775 2.895372 CATTAGGTCGGGCCACGC 60.895 66.667 4.39 2.46 43.86 5.34
750 776 2.895372 GCATTAGGTCGGGCCACG 60.895 66.667 4.39 6.13 46.11 4.94
751 777 2.895372 CGCATTAGGTCGGGCCAC 60.895 66.667 4.39 0.37 40.61 5.01
752 778 3.078196 TCGCATTAGGTCGGGCCA 61.078 61.111 4.39 0.00 40.61 5.36
753 779 2.588034 GTCGCATTAGGTCGGGCC 60.588 66.667 0.00 0.00 37.58 5.80
754 780 2.588034 GGTCGCATTAGGTCGGGC 60.588 66.667 0.00 0.00 0.00 6.13
755 781 1.087771 GTTGGTCGCATTAGGTCGGG 61.088 60.000 0.00 0.00 0.00 5.14
756 782 1.087771 GGTTGGTCGCATTAGGTCGG 61.088 60.000 0.00 0.00 0.00 4.79
757 783 0.390603 TGGTTGGTCGCATTAGGTCG 60.391 55.000 0.00 0.00 0.00 4.79
758 784 1.816074 TTGGTTGGTCGCATTAGGTC 58.184 50.000 0.00 0.00 0.00 3.85
759 785 1.883926 GTTTGGTTGGTCGCATTAGGT 59.116 47.619 0.00 0.00 0.00 3.08
760 786 1.883275 TGTTTGGTTGGTCGCATTAGG 59.117 47.619 0.00 0.00 0.00 2.69
761 787 2.664424 CGTGTTTGGTTGGTCGCATTAG 60.664 50.000 0.00 0.00 0.00 1.73
762 788 1.264557 CGTGTTTGGTTGGTCGCATTA 59.735 47.619 0.00 0.00 0.00 1.90
763 789 0.030101 CGTGTTTGGTTGGTCGCATT 59.970 50.000 0.00 0.00 0.00 3.56
764 790 1.098712 ACGTGTTTGGTTGGTCGCAT 61.099 50.000 0.00 0.00 0.00 4.73
765 791 1.707239 GACGTGTTTGGTTGGTCGCA 61.707 55.000 0.00 0.00 0.00 5.10
766 792 1.010462 GACGTGTTTGGTTGGTCGC 60.010 57.895 0.00 0.00 0.00 5.19
767 793 0.812412 AGGACGTGTTTGGTTGGTCG 60.812 55.000 0.00 0.00 0.00 4.79
768 794 2.140717 CTAGGACGTGTTTGGTTGGTC 58.859 52.381 0.00 0.00 0.00 4.02
769 795 1.764134 TCTAGGACGTGTTTGGTTGGT 59.236 47.619 0.00 0.00 0.00 3.67
770 796 2.536761 TCTAGGACGTGTTTGGTTGG 57.463 50.000 0.00 0.00 0.00 3.77
771 797 2.666508 CGATCTAGGACGTGTTTGGTTG 59.333 50.000 0.00 0.00 0.00 3.77
772 798 2.929592 GCGATCTAGGACGTGTTTGGTT 60.930 50.000 0.00 0.00 0.00 3.67
773 799 1.403780 GCGATCTAGGACGTGTTTGGT 60.404 52.381 0.00 0.00 0.00 3.67
774 800 1.135083 AGCGATCTAGGACGTGTTTGG 60.135 52.381 0.00 0.00 0.00 3.28
775 801 1.920574 CAGCGATCTAGGACGTGTTTG 59.079 52.381 0.00 0.00 0.00 2.93
776 802 1.736032 GCAGCGATCTAGGACGTGTTT 60.736 52.381 0.00 0.00 0.00 2.83
777 803 0.179134 GCAGCGATCTAGGACGTGTT 60.179 55.000 0.00 0.00 0.00 3.32
778 804 1.313091 TGCAGCGATCTAGGACGTGT 61.313 55.000 0.00 0.00 0.00 4.49
779 805 0.031314 ATGCAGCGATCTAGGACGTG 59.969 55.000 0.00 8.50 0.00 4.49
780 806 1.537638 CTATGCAGCGATCTAGGACGT 59.462 52.381 0.00 0.00 0.00 4.34
781 807 1.807142 TCTATGCAGCGATCTAGGACG 59.193 52.381 0.00 5.41 0.00 4.79
782 808 3.924918 TTCTATGCAGCGATCTAGGAC 57.075 47.619 0.00 0.00 0.00 3.85
783 809 4.082125 TGATTCTATGCAGCGATCTAGGA 58.918 43.478 0.00 0.00 0.00 2.94
784 810 4.172505 GTGATTCTATGCAGCGATCTAGG 58.827 47.826 0.00 0.00 0.00 3.02
785 811 4.082300 AGGTGATTCTATGCAGCGATCTAG 60.082 45.833 0.00 0.00 37.57 2.43
1198 1227 0.817654 ATCTGATCACCAAGCGACGA 59.182 50.000 0.00 0.00 0.00 4.20
1244 1273 5.705400 CCCCCTCATACCAAATAACAAGAT 58.295 41.667 0.00 0.00 0.00 2.40
1324 1353 2.959357 GCCTGTGCAGTCGAACAGC 61.959 63.158 9.09 4.03 42.03 4.40
1339 1368 2.290287 TGTGCGTACCTGGATGCCT 61.290 57.895 0.00 0.00 0.00 4.75
1369 1398 0.598065 GAACAGCCACGCCTGAATTT 59.402 50.000 5.47 0.00 36.67 1.82
1394 1423 1.835483 GCATTTGAGCGCCGATCGAT 61.835 55.000 18.66 0.00 41.67 3.59
1631 1660 0.247736 CCCCCAGTTCTTCGAGTCAG 59.752 60.000 0.00 0.00 0.00 3.51
1919 1951 4.566545 TTCAACAGCACAACTACAATGG 57.433 40.909 0.00 0.00 0.00 3.16
1949 1983 5.914898 ACACAACAGCCTAACTTCTTTTT 57.085 34.783 0.00 0.00 0.00 1.94
1950 1984 5.652452 AGAACACAACAGCCTAACTTCTTTT 59.348 36.000 0.00 0.00 0.00 2.27
1951 1985 5.193679 AGAACACAACAGCCTAACTTCTTT 58.806 37.500 0.00 0.00 0.00 2.52
1952 1986 4.781934 AGAACACAACAGCCTAACTTCTT 58.218 39.130 0.00 0.00 0.00 2.52
1953 1987 4.423625 AGAACACAACAGCCTAACTTCT 57.576 40.909 0.00 0.00 0.00 2.85
1954 1988 4.318831 CGAAGAACACAACAGCCTAACTTC 60.319 45.833 0.00 0.00 0.00 3.01
1955 1989 3.560068 CGAAGAACACAACAGCCTAACTT 59.440 43.478 0.00 0.00 0.00 2.66
1956 1990 3.131396 CGAAGAACACAACAGCCTAACT 58.869 45.455 0.00 0.00 0.00 2.24
1957 1991 2.870411 ACGAAGAACACAACAGCCTAAC 59.130 45.455 0.00 0.00 0.00 2.34
1958 1992 3.188159 ACGAAGAACACAACAGCCTAA 57.812 42.857 0.00 0.00 0.00 2.69
1959 1993 2.902705 ACGAAGAACACAACAGCCTA 57.097 45.000 0.00 0.00 0.00 3.93
1960 1994 2.038387 AACGAAGAACACAACAGCCT 57.962 45.000 0.00 0.00 0.00 4.58
1961 1995 4.689345 AGTATAACGAAGAACACAACAGCC 59.311 41.667 0.00 0.00 0.00 4.85
1962 1996 5.840940 AGTATAACGAAGAACACAACAGC 57.159 39.130 0.00 0.00 0.00 4.40
2534 2568 0.918983 TGGGGATTAGCAAGGGAGTG 59.081 55.000 0.00 0.00 0.00 3.51
2535 2569 1.777272 GATGGGGATTAGCAAGGGAGT 59.223 52.381 0.00 0.00 0.00 3.85
2536 2570 1.776667 TGATGGGGATTAGCAAGGGAG 59.223 52.381 0.00 0.00 0.00 4.30
2537 2571 1.494721 GTGATGGGGATTAGCAAGGGA 59.505 52.381 0.00 0.00 0.00 4.20
2538 2572 1.496429 AGTGATGGGGATTAGCAAGGG 59.504 52.381 0.00 0.00 0.00 3.95
2539 2573 2.579873 CAGTGATGGGGATTAGCAAGG 58.420 52.381 0.00 0.00 0.00 3.61
2540 2574 1.952296 GCAGTGATGGGGATTAGCAAG 59.048 52.381 0.00 0.00 0.00 4.01
2541 2575 1.284491 TGCAGTGATGGGGATTAGCAA 59.716 47.619 0.00 0.00 0.00 3.91
2542 2576 0.918258 TGCAGTGATGGGGATTAGCA 59.082 50.000 0.00 0.00 0.00 3.49
2543 2577 2.157738 GATGCAGTGATGGGGATTAGC 58.842 52.381 0.00 0.00 0.00 3.09
2544 2578 3.784511 AGATGCAGTGATGGGGATTAG 57.215 47.619 0.00 0.00 0.00 1.73
2545 2579 4.209538 CAAAGATGCAGTGATGGGGATTA 58.790 43.478 0.00 0.00 0.00 1.75
2546 2580 3.028850 CAAAGATGCAGTGATGGGGATT 58.971 45.455 0.00 0.00 0.00 3.01
2547 2581 2.024655 ACAAAGATGCAGTGATGGGGAT 60.025 45.455 0.00 0.00 0.00 3.85
2548 2582 1.355381 ACAAAGATGCAGTGATGGGGA 59.645 47.619 0.00 0.00 0.00 4.81
2549 2583 1.747355 GACAAAGATGCAGTGATGGGG 59.253 52.381 0.00 0.00 0.00 4.96
2550 2584 1.747355 GGACAAAGATGCAGTGATGGG 59.253 52.381 0.00 0.00 0.00 4.00
2551 2585 2.719739 AGGACAAAGATGCAGTGATGG 58.280 47.619 0.00 0.00 0.00 3.51
2552 2586 3.128242 GGAAGGACAAAGATGCAGTGATG 59.872 47.826 0.00 0.00 0.00 3.07
2553 2587 3.245016 TGGAAGGACAAAGATGCAGTGAT 60.245 43.478 0.00 0.00 0.00 3.06
2554 2588 2.106338 TGGAAGGACAAAGATGCAGTGA 59.894 45.455 0.00 0.00 0.00 3.41
2555 2589 2.227388 GTGGAAGGACAAAGATGCAGTG 59.773 50.000 0.00 0.00 0.00 3.66
2556 2590 2.508526 GTGGAAGGACAAAGATGCAGT 58.491 47.619 0.00 0.00 0.00 4.40
2557 2591 1.466167 CGTGGAAGGACAAAGATGCAG 59.534 52.381 0.00 0.00 0.00 4.41
2558 2592 1.071542 TCGTGGAAGGACAAAGATGCA 59.928 47.619 0.00 0.00 0.00 3.96
2559 2593 1.808411 TCGTGGAAGGACAAAGATGC 58.192 50.000 0.00 0.00 0.00 3.91
2560 2594 3.866651 AGATCGTGGAAGGACAAAGATG 58.133 45.455 0.00 0.00 31.22 2.90
2561 2595 3.118592 GGAGATCGTGGAAGGACAAAGAT 60.119 47.826 0.00 0.00 31.22 2.40
2562 2596 2.233922 GGAGATCGTGGAAGGACAAAGA 59.766 50.000 0.00 0.00 31.22 2.52
2563 2597 2.234908 AGGAGATCGTGGAAGGACAAAG 59.765 50.000 0.00 0.00 31.22 2.77
2564 2598 2.233922 GAGGAGATCGTGGAAGGACAAA 59.766 50.000 0.00 0.00 31.22 2.83
2565 2599 1.825474 GAGGAGATCGTGGAAGGACAA 59.175 52.381 0.00 0.00 31.22 3.18
2566 2600 1.272480 TGAGGAGATCGTGGAAGGACA 60.272 52.381 0.00 0.00 31.22 4.02
2567 2601 1.475403 TGAGGAGATCGTGGAAGGAC 58.525 55.000 0.00 0.00 31.22 3.85
2568 2602 2.091610 AGATGAGGAGATCGTGGAAGGA 60.092 50.000 0.00 0.00 33.98 3.36
2569 2603 2.295909 GAGATGAGGAGATCGTGGAAGG 59.704 54.545 0.00 0.00 0.00 3.46
2570 2604 3.221771 AGAGATGAGGAGATCGTGGAAG 58.778 50.000 0.00 0.00 0.00 3.46
2571 2605 3.304911 AGAGATGAGGAGATCGTGGAA 57.695 47.619 0.00 0.00 0.00 3.53
2572 2606 3.218453 GAAGAGATGAGGAGATCGTGGA 58.782 50.000 0.00 0.00 0.00 4.02
2573 2607 2.295909 GGAAGAGATGAGGAGATCGTGG 59.704 54.545 0.00 0.00 0.00 4.94
2574 2608 3.221771 AGGAAGAGATGAGGAGATCGTG 58.778 50.000 0.00 0.00 0.00 4.35
2575 2609 3.593442 AGGAAGAGATGAGGAGATCGT 57.407 47.619 0.00 0.00 0.00 3.73
2576 2610 4.144297 AGAAGGAAGAGATGAGGAGATCG 58.856 47.826 0.00 0.00 0.00 3.69
2577 2611 6.324770 AGAAAGAAGGAAGAGATGAGGAGATC 59.675 42.308 0.00 0.00 0.00 2.75
2578 2612 6.204555 AGAAAGAAGGAAGAGATGAGGAGAT 58.795 40.000 0.00 0.00 0.00 2.75
2579 2613 5.588845 AGAAAGAAGGAAGAGATGAGGAGA 58.411 41.667 0.00 0.00 0.00 3.71
2580 2614 5.937975 AGAAAGAAGGAAGAGATGAGGAG 57.062 43.478 0.00 0.00 0.00 3.69
2581 2615 6.379703 CACTAGAAAGAAGGAAGAGATGAGGA 59.620 42.308 0.00 0.00 0.00 3.71
2582 2616 6.406849 CCACTAGAAAGAAGGAAGAGATGAGG 60.407 46.154 0.00 0.00 0.00 3.86
2583 2617 6.406849 CCCACTAGAAAGAAGGAAGAGATGAG 60.407 46.154 0.00 0.00 0.00 2.90
2584 2618 5.423610 CCCACTAGAAAGAAGGAAGAGATGA 59.576 44.000 0.00 0.00 0.00 2.92
2585 2619 5.423610 TCCCACTAGAAAGAAGGAAGAGATG 59.576 44.000 0.00 0.00 0.00 2.90
2586 2620 5.594777 TCCCACTAGAAAGAAGGAAGAGAT 58.405 41.667 0.00 0.00 0.00 2.75
2587 2621 5.011982 TCCCACTAGAAAGAAGGAAGAGA 57.988 43.478 0.00 0.00 0.00 3.10
2588 2622 5.948742 ATCCCACTAGAAAGAAGGAAGAG 57.051 43.478 0.00 0.00 33.26 2.85
2589 2623 6.026186 AGAATCCCACTAGAAAGAAGGAAGA 58.974 40.000 0.00 0.00 33.26 2.87
2590 2624 6.306643 AGAATCCCACTAGAAAGAAGGAAG 57.693 41.667 0.00 0.00 33.26 3.46
2591 2625 6.301169 GAGAATCCCACTAGAAAGAAGGAA 57.699 41.667 0.00 0.00 33.26 3.36
2592 2626 5.941555 GAGAATCCCACTAGAAAGAAGGA 57.058 43.478 0.00 0.00 33.79 3.36
2608 2642 4.706035 AGAAGCATGAGATGTGGAGAATC 58.294 43.478 0.00 0.00 0.00 2.52
2609 2643 4.774660 AGAAGCATGAGATGTGGAGAAT 57.225 40.909 0.00 0.00 0.00 2.40
2610 2644 4.224594 AGAAGAAGCATGAGATGTGGAGAA 59.775 41.667 0.00 0.00 0.00 2.87
2611 2645 3.773667 AGAAGAAGCATGAGATGTGGAGA 59.226 43.478 0.00 0.00 0.00 3.71
2612 2646 4.121317 GAGAAGAAGCATGAGATGTGGAG 58.879 47.826 0.00 0.00 0.00 3.86
2613 2647 3.118482 GGAGAAGAAGCATGAGATGTGGA 60.118 47.826 0.00 0.00 0.00 4.02
2614 2648 3.118334 AGGAGAAGAAGCATGAGATGTGG 60.118 47.826 0.00 0.00 0.00 4.17
2615 2649 4.139859 AGGAGAAGAAGCATGAGATGTG 57.860 45.455 0.00 0.00 0.00 3.21
2616 2650 4.961730 AGTAGGAGAAGAAGCATGAGATGT 59.038 41.667 0.00 0.00 0.00 3.06
2617 2651 5.509501 GGAGTAGGAGAAGAAGCATGAGATG 60.510 48.000 0.00 0.00 0.00 2.90
2618 2652 4.588528 GGAGTAGGAGAAGAAGCATGAGAT 59.411 45.833 0.00 0.00 0.00 2.75
2619 2653 3.957497 GGAGTAGGAGAAGAAGCATGAGA 59.043 47.826 0.00 0.00 0.00 3.27
2620 2654 3.703556 TGGAGTAGGAGAAGAAGCATGAG 59.296 47.826 0.00 0.00 0.00 2.90
2621 2655 3.449018 GTGGAGTAGGAGAAGAAGCATGA 59.551 47.826 0.00 0.00 0.00 3.07
2622 2656 3.431486 GGTGGAGTAGGAGAAGAAGCATG 60.431 52.174 0.00 0.00 0.00 4.06
2623 2657 2.769095 GGTGGAGTAGGAGAAGAAGCAT 59.231 50.000 0.00 0.00 0.00 3.79
2624 2658 2.180276 GGTGGAGTAGGAGAAGAAGCA 58.820 52.381 0.00 0.00 0.00 3.91
2625 2659 2.462723 AGGTGGAGTAGGAGAAGAAGC 58.537 52.381 0.00 0.00 0.00 3.86
2626 2660 5.118729 TCTAGGTGGAGTAGGAGAAGAAG 57.881 47.826 0.00 0.00 0.00 2.85
2627 2661 5.193930 TCATCTAGGTGGAGTAGGAGAAGAA 59.806 44.000 2.43 0.00 0.00 2.52
2628 2662 4.727332 TCATCTAGGTGGAGTAGGAGAAGA 59.273 45.833 2.43 0.00 0.00 2.87
2629 2663 5.055265 TCATCTAGGTGGAGTAGGAGAAG 57.945 47.826 2.43 0.00 0.00 2.85
2630 2664 5.467668 TTCATCTAGGTGGAGTAGGAGAA 57.532 43.478 2.43 0.00 0.00 2.87
2631 2665 5.044030 ACTTTCATCTAGGTGGAGTAGGAGA 60.044 44.000 2.43 0.00 0.00 3.71
2632 2666 5.068460 CACTTTCATCTAGGTGGAGTAGGAG 59.932 48.000 2.43 0.00 0.00 3.69
2633 2667 4.956700 CACTTTCATCTAGGTGGAGTAGGA 59.043 45.833 2.43 0.00 0.00 2.94
2634 2668 4.442192 GCACTTTCATCTAGGTGGAGTAGG 60.442 50.000 2.43 0.00 0.00 3.18
2635 2669 4.160439 TGCACTTTCATCTAGGTGGAGTAG 59.840 45.833 2.43 0.00 0.00 2.57
2636 2670 4.093743 TGCACTTTCATCTAGGTGGAGTA 58.906 43.478 2.43 0.00 0.00 2.59
2637 2671 2.906389 TGCACTTTCATCTAGGTGGAGT 59.094 45.455 2.43 5.21 0.00 3.85
2638 2672 3.529533 CTGCACTTTCATCTAGGTGGAG 58.470 50.000 2.43 4.57 40.48 3.86
2639 2673 2.237143 CCTGCACTTTCATCTAGGTGGA 59.763 50.000 2.43 0.00 0.00 4.02
2640 2674 2.237143 TCCTGCACTTTCATCTAGGTGG 59.763 50.000 2.43 0.00 0.00 4.61
2641 2675 3.616956 TCCTGCACTTTCATCTAGGTG 57.383 47.619 0.00 0.00 0.00 4.00
2642 2676 3.840666 TCTTCCTGCACTTTCATCTAGGT 59.159 43.478 0.00 0.00 0.00 3.08
2643 2677 4.478206 TCTTCCTGCACTTTCATCTAGG 57.522 45.455 0.00 0.00 0.00 3.02
2644 2678 5.916318 AGATCTTCCTGCACTTTCATCTAG 58.084 41.667 0.00 0.00 0.00 2.43
2645 2679 5.423290 TGAGATCTTCCTGCACTTTCATCTA 59.577 40.000 0.00 0.00 0.00 1.98
2646 2680 4.224594 TGAGATCTTCCTGCACTTTCATCT 59.775 41.667 0.00 0.00 0.00 2.90
2647 2681 4.511527 TGAGATCTTCCTGCACTTTCATC 58.488 43.478 0.00 0.00 0.00 2.92
2648 2682 4.564782 TGAGATCTTCCTGCACTTTCAT 57.435 40.909 0.00 0.00 0.00 2.57
2649 2683 4.019950 TCATGAGATCTTCCTGCACTTTCA 60.020 41.667 0.00 0.00 0.00 2.69
2650 2684 4.332268 GTCATGAGATCTTCCTGCACTTTC 59.668 45.833 0.00 0.00 0.00 2.62
2651 2685 4.019501 AGTCATGAGATCTTCCTGCACTTT 60.020 41.667 0.00 0.00 0.00 2.66
2652 2686 3.518705 AGTCATGAGATCTTCCTGCACTT 59.481 43.478 0.00 0.00 0.00 3.16
2653 2687 3.106054 AGTCATGAGATCTTCCTGCACT 58.894 45.455 0.00 0.00 0.00 4.40
2654 2688 3.118847 TGAGTCATGAGATCTTCCTGCAC 60.119 47.826 0.00 0.00 0.00 4.57
2655 2689 3.102204 TGAGTCATGAGATCTTCCTGCA 58.898 45.455 0.00 0.00 0.00 4.41
2656 2690 3.815856 TGAGTCATGAGATCTTCCTGC 57.184 47.619 0.00 0.00 0.00 4.85
2657 2691 4.344390 TCCATGAGTCATGAGATCTTCCTG 59.656 45.833 30.63 12.33 43.81 3.86
2658 2692 4.554683 TCCATGAGTCATGAGATCTTCCT 58.445 43.478 30.63 0.00 43.81 3.36
2659 2693 4.952071 TCCATGAGTCATGAGATCTTCC 57.048 45.455 30.63 0.00 43.81 3.46
2660 2694 6.099159 TGATCCATGAGTCATGAGATCTTC 57.901 41.667 34.66 24.41 43.81 2.87
2661 2695 6.499000 AGATGATCCATGAGTCATGAGATCTT 59.501 38.462 34.66 31.83 43.81 2.40
2662 2696 6.020389 AGATGATCCATGAGTCATGAGATCT 58.980 40.000 34.66 27.79 43.81 2.75
2663 2697 6.288941 AGATGATCCATGAGTCATGAGATC 57.711 41.667 32.18 32.18 43.81 2.75
2664 2698 6.270231 TCAAGATGATCCATGAGTCATGAGAT 59.730 38.462 30.63 27.36 43.81 2.75
2665 2699 5.601313 TCAAGATGATCCATGAGTCATGAGA 59.399 40.000 30.63 24.60 43.81 3.27
2666 2700 5.855045 TCAAGATGATCCATGAGTCATGAG 58.145 41.667 30.63 20.88 43.81 2.90
2667 2701 5.881923 TCAAGATGATCCATGAGTCATGA 57.118 39.130 30.63 18.25 43.81 3.07
2668 2702 5.049336 GCTTCAAGATGATCCATGAGTCATG 60.049 44.000 23.81 23.81 41.10 3.07
2669 2703 5.064558 GCTTCAAGATGATCCATGAGTCAT 58.935 41.667 11.17 11.17 37.76 3.06
2670 2704 4.163649 AGCTTCAAGATGATCCATGAGTCA 59.836 41.667 0.00 0.00 0.00 3.41
2671 2705 4.706035 AGCTTCAAGATGATCCATGAGTC 58.294 43.478 0.00 0.00 0.00 3.36
2672 2706 4.706035 GAGCTTCAAGATGATCCATGAGT 58.294 43.478 0.00 0.00 0.00 3.41
2673 2707 3.741856 CGAGCTTCAAGATGATCCATGAG 59.258 47.826 0.00 0.00 0.00 2.90
2674 2708 3.385755 TCGAGCTTCAAGATGATCCATGA 59.614 43.478 0.00 0.00 0.00 3.07
2675 2709 3.725490 TCGAGCTTCAAGATGATCCATG 58.275 45.455 0.00 0.00 0.00 3.66
2676 2710 3.244146 CCTCGAGCTTCAAGATGATCCAT 60.244 47.826 6.99 0.00 0.00 3.41
2677 2711 2.102084 CCTCGAGCTTCAAGATGATCCA 59.898 50.000 6.99 0.00 0.00 3.41
2678 2712 2.102252 ACCTCGAGCTTCAAGATGATCC 59.898 50.000 6.99 0.00 0.00 3.36
2679 2713 3.122297 CACCTCGAGCTTCAAGATGATC 58.878 50.000 6.99 0.00 0.00 2.92
2680 2714 2.158986 CCACCTCGAGCTTCAAGATGAT 60.159 50.000 6.99 0.00 0.00 2.45
2681 2715 1.205655 CCACCTCGAGCTTCAAGATGA 59.794 52.381 6.99 0.00 0.00 2.92
2682 2716 1.066573 ACCACCTCGAGCTTCAAGATG 60.067 52.381 6.99 0.00 0.00 2.90
2683 2717 1.205893 GACCACCTCGAGCTTCAAGAT 59.794 52.381 6.99 0.00 0.00 2.40
2684 2718 0.603569 GACCACCTCGAGCTTCAAGA 59.396 55.000 6.99 0.00 0.00 3.02
2685 2719 0.390472 GGACCACCTCGAGCTTCAAG 60.390 60.000 6.99 0.00 0.00 3.02
2686 2720 1.671742 GGACCACCTCGAGCTTCAA 59.328 57.895 6.99 0.00 0.00 2.69
2687 2721 2.283529 GGGACCACCTCGAGCTTCA 61.284 63.158 6.99 0.00 35.85 3.02
2688 2722 2.283529 TGGGACCACCTCGAGCTTC 61.284 63.158 6.99 0.00 41.11 3.86
2689 2723 2.203788 TGGGACCACCTCGAGCTT 60.204 61.111 6.99 0.00 41.11 3.74
2690 2724 2.997897 GTGGGACCACCTCGAGCT 60.998 66.667 6.99 0.00 40.79 4.09
2691 2725 2.660064 ATGTGGGACCACCTCGAGC 61.660 63.158 18.18 0.00 45.63 5.03
2692 2726 1.219124 CATGTGGGACCACCTCGAG 59.781 63.158 18.18 5.13 45.63 4.04
2693 2727 2.954684 GCATGTGGGACCACCTCGA 61.955 63.158 18.18 0.39 45.63 4.04
2694 2728 2.436646 GCATGTGGGACCACCTCG 60.437 66.667 18.18 8.04 45.63 4.63
2695 2729 2.436646 CGCATGTGGGACCACCTC 60.437 66.667 18.18 6.81 45.63 3.85
2696 2730 3.249189 ACGCATGTGGGACCACCT 61.249 61.111 18.18 6.24 45.63 4.00
2697 2731 2.746277 GACGCATGTGGGACCACC 60.746 66.667 18.18 2.89 45.63 4.61
2698 2732 3.118454 CGACGCATGTGGGACCAC 61.118 66.667 14.45 14.45 46.33 4.16
2699 2733 3.295304 CTCGACGCATGTGGGACCA 62.295 63.158 11.65 0.00 0.00 4.02
2700 2734 2.509336 CTCGACGCATGTGGGACC 60.509 66.667 11.65 0.00 0.00 4.46
2701 2735 3.188786 GCTCGACGCATGTGGGAC 61.189 66.667 11.65 1.02 38.92 4.46
2702 2736 2.942796 AAGCTCGACGCATGTGGGA 61.943 57.895 11.65 6.66 42.61 4.37
2703 2737 2.434884 AAGCTCGACGCATGTGGG 60.435 61.111 11.65 2.13 42.61 4.61
2704 2738 2.743752 CCAAGCTCGACGCATGTGG 61.744 63.158 11.65 8.82 42.61 4.17
2705 2739 2.743752 CCCAAGCTCGACGCATGTG 61.744 63.158 4.30 4.30 42.61 3.21
2706 2740 2.434884 CCCAAGCTCGACGCATGT 60.435 61.111 9.09 0.00 42.61 3.21
2707 2741 3.197790 CCCCAAGCTCGACGCATG 61.198 66.667 9.09 7.21 42.61 4.06
2708 2742 2.463589 TTTCCCCAAGCTCGACGCAT 62.464 55.000 9.09 0.00 42.61 4.73
2709 2743 2.668185 TTTTCCCCAAGCTCGACGCA 62.668 55.000 9.09 0.00 42.61 5.24
2710 2744 1.305930 ATTTTCCCCAAGCTCGACGC 61.306 55.000 0.00 0.00 39.57 5.19
2711 2745 0.447801 CATTTTCCCCAAGCTCGACG 59.552 55.000 0.00 0.00 0.00 5.12
2712 2746 1.468914 GTCATTTTCCCCAAGCTCGAC 59.531 52.381 0.00 0.00 0.00 4.20
2713 2747 1.821216 GTCATTTTCCCCAAGCTCGA 58.179 50.000 0.00 0.00 0.00 4.04
2714 2748 0.447801 CGTCATTTTCCCCAAGCTCG 59.552 55.000 0.00 0.00 0.00 5.03
2715 2749 0.171231 GCGTCATTTTCCCCAAGCTC 59.829 55.000 0.00 0.00 0.00 4.09
2716 2750 1.250840 GGCGTCATTTTCCCCAAGCT 61.251 55.000 0.00 0.00 0.00 3.74
2717 2751 1.215382 GGCGTCATTTTCCCCAAGC 59.785 57.895 0.00 0.00 0.00 4.01
2718 2752 0.897863 TGGGCGTCATTTTCCCCAAG 60.898 55.000 0.00 0.00 44.23 3.61
2719 2753 1.153989 TGGGCGTCATTTTCCCCAA 59.846 52.632 0.00 0.00 44.23 4.12
2720 2754 0.897863 CTTGGGCGTCATTTTCCCCA 60.898 55.000 0.00 0.00 45.45 4.96
2721 2755 1.604147 CCTTGGGCGTCATTTTCCCC 61.604 60.000 0.00 0.00 39.30 4.81
2722 2756 1.604147 CCCTTGGGCGTCATTTTCCC 61.604 60.000 0.00 0.00 40.47 3.97
2723 2757 0.898326 ACCCTTGGGCGTCATTTTCC 60.898 55.000 5.46 0.00 0.00 3.13
2724 2758 0.243636 CACCCTTGGGCGTCATTTTC 59.756 55.000 5.46 0.00 0.00 2.29
2725 2759 1.184970 CCACCCTTGGGCGTCATTTT 61.185 55.000 5.46 0.00 39.57 1.82
2726 2760 1.606313 CCACCCTTGGGCGTCATTT 60.606 57.895 5.46 0.00 39.57 2.32
2727 2761 1.863155 ATCCACCCTTGGGCGTCATT 61.863 55.000 5.46 0.00 44.11 2.57
2728 2762 2.308722 ATCCACCCTTGGGCGTCAT 61.309 57.895 5.46 0.00 44.11 3.06
2729 2763 2.933287 ATCCACCCTTGGGCGTCA 60.933 61.111 5.46 0.00 44.11 4.35
2730 2764 2.438434 CATCCACCCTTGGGCGTC 60.438 66.667 5.46 0.00 44.11 5.19
2731 2765 4.047125 CCATCCACCCTTGGGCGT 62.047 66.667 5.46 0.00 44.11 5.68
2732 2766 2.965716 GATCCATCCACCCTTGGGCG 62.966 65.000 5.46 0.00 44.11 6.13
2733 2767 1.152673 GATCCATCCACCCTTGGGC 60.153 63.158 5.46 0.00 44.11 5.36
2734 2768 1.538666 GGATCCATCCACCCTTGGG 59.461 63.158 6.95 3.77 46.38 4.12
2744 2778 0.534652 GTGAGCTGCCTGGATCCATC 60.535 60.000 16.63 9.43 0.00 3.51
2745 2779 1.276859 TGTGAGCTGCCTGGATCCAT 61.277 55.000 16.63 0.00 0.00 3.41
2746 2780 1.276859 ATGTGAGCTGCCTGGATCCA 61.277 55.000 15.27 15.27 0.00 3.41
2747 2781 0.818445 CATGTGAGCTGCCTGGATCC 60.818 60.000 4.20 4.20 0.00 3.36
2748 2782 0.107312 ACATGTGAGCTGCCTGGATC 60.107 55.000 0.00 0.00 0.00 3.36
2749 2783 0.330604 AACATGTGAGCTGCCTGGAT 59.669 50.000 0.00 0.00 0.00 3.41
2750 2784 0.607217 CAACATGTGAGCTGCCTGGA 60.607 55.000 0.00 0.00 0.00 3.86
2751 2785 0.607217 TCAACATGTGAGCTGCCTGG 60.607 55.000 0.00 0.00 0.00 4.45
2752 2786 1.460504 ATCAACATGTGAGCTGCCTG 58.539 50.000 0.00 0.00 40.43 4.85
2753 2787 2.238144 ACTATCAACATGTGAGCTGCCT 59.762 45.455 0.00 0.00 40.43 4.75
2754 2788 2.636830 ACTATCAACATGTGAGCTGCC 58.363 47.619 0.00 0.00 40.43 4.85
2755 2789 4.691860 AAACTATCAACATGTGAGCTGC 57.308 40.909 0.00 0.00 40.43 5.25
2782 2816 9.297037 GGCTGGTTAATTAATATAAGATGGTGT 57.703 33.333 0.31 0.00 0.00 4.16
2783 2817 9.295825 TGGCTGGTTAATTAATATAAGATGGTG 57.704 33.333 0.31 0.00 0.00 4.17
2784 2818 9.297037 GTGGCTGGTTAATTAATATAAGATGGT 57.703 33.333 0.31 0.00 0.00 3.55
2785 2819 9.295825 TGTGGCTGGTTAATTAATATAAGATGG 57.704 33.333 0.31 0.00 0.00 3.51
2787 2821 9.297037 GGTGTGGCTGGTTAATTAATATAAGAT 57.703 33.333 0.31 0.00 0.00 2.40
2788 2822 8.275758 TGGTGTGGCTGGTTAATTAATATAAGA 58.724 33.333 0.31 0.00 0.00 2.10
2789 2823 8.458573 TGGTGTGGCTGGTTAATTAATATAAG 57.541 34.615 0.31 0.00 0.00 1.73
2790 2824 8.056400 ACTGGTGTGGCTGGTTAATTAATATAA 58.944 33.333 0.31 0.00 0.00 0.98
2791 2825 7.579105 ACTGGTGTGGCTGGTTAATTAATATA 58.421 34.615 0.31 0.00 0.00 0.86
2792 2826 6.431722 ACTGGTGTGGCTGGTTAATTAATAT 58.568 36.000 0.31 0.00 0.00 1.28
2793 2827 5.822204 ACTGGTGTGGCTGGTTAATTAATA 58.178 37.500 0.31 0.00 0.00 0.98
2794 2828 4.672899 ACTGGTGTGGCTGGTTAATTAAT 58.327 39.130 0.31 0.00 0.00 1.40
2795 2829 4.107127 ACTGGTGTGGCTGGTTAATTAA 57.893 40.909 0.00 0.00 0.00 1.40
2796 2830 3.799432 ACTGGTGTGGCTGGTTAATTA 57.201 42.857 0.00 0.00 0.00 1.40
2797 2831 2.675658 ACTGGTGTGGCTGGTTAATT 57.324 45.000 0.00 0.00 0.00 1.40
2798 2832 2.373836 TGTACTGGTGTGGCTGGTTAAT 59.626 45.455 0.00 0.00 0.00 1.40
2799 2833 1.769465 TGTACTGGTGTGGCTGGTTAA 59.231 47.619 0.00 0.00 0.00 2.01
2800 2834 1.071071 GTGTACTGGTGTGGCTGGTTA 59.929 52.381 0.00 0.00 0.00 2.85
2801 2835 0.179029 GTGTACTGGTGTGGCTGGTT 60.179 55.000 0.00 0.00 0.00 3.67
2802 2836 1.054406 AGTGTACTGGTGTGGCTGGT 61.054 55.000 0.00 0.00 0.00 4.00
2803 2837 0.320771 GAGTGTACTGGTGTGGCTGG 60.321 60.000 0.00 0.00 0.00 4.85
2804 2838 0.392706 TGAGTGTACTGGTGTGGCTG 59.607 55.000 0.00 0.00 0.00 4.85
2805 2839 1.352083 ATGAGTGTACTGGTGTGGCT 58.648 50.000 0.00 0.00 0.00 4.75
2806 2840 2.076863 GAATGAGTGTACTGGTGTGGC 58.923 52.381 0.00 0.00 0.00 5.01
2807 2841 2.029380 TCGAATGAGTGTACTGGTGTGG 60.029 50.000 0.00 0.00 0.00 4.17
2808 2842 3.297830 TCGAATGAGTGTACTGGTGTG 57.702 47.619 0.00 0.00 0.00 3.82
2809 2843 4.461431 TGTATCGAATGAGTGTACTGGTGT 59.539 41.667 0.00 0.00 0.00 4.16
2810 2844 4.993905 TGTATCGAATGAGTGTACTGGTG 58.006 43.478 0.00 0.00 0.00 4.17
2811 2845 5.654603 TTGTATCGAATGAGTGTACTGGT 57.345 39.130 0.00 0.00 0.00 4.00
2812 2846 8.818141 AATATTGTATCGAATGAGTGTACTGG 57.182 34.615 0.00 0.00 0.00 4.00
2813 2847 9.463443 TGAATATTGTATCGAATGAGTGTACTG 57.537 33.333 0.00 0.00 0.00 2.74
2814 2848 9.464714 GTGAATATTGTATCGAATGAGTGTACT 57.535 33.333 0.00 0.00 0.00 2.73
2815 2849 8.700644 GGTGAATATTGTATCGAATGAGTGTAC 58.299 37.037 0.00 0.00 0.00 2.90
2816 2850 8.417884 TGGTGAATATTGTATCGAATGAGTGTA 58.582 33.333 0.00 0.00 0.00 2.90
2817 2851 7.224753 GTGGTGAATATTGTATCGAATGAGTGT 59.775 37.037 0.00 0.00 0.00 3.55
2818 2852 7.224557 TGTGGTGAATATTGTATCGAATGAGTG 59.775 37.037 0.00 0.00 0.00 3.51
2819 2853 7.224753 GTGTGGTGAATATTGTATCGAATGAGT 59.775 37.037 0.00 0.00 0.00 3.41
2820 2854 7.224557 TGTGTGGTGAATATTGTATCGAATGAG 59.775 37.037 0.00 0.00 0.00 2.90
2821 2855 7.044798 TGTGTGGTGAATATTGTATCGAATGA 58.955 34.615 0.00 0.00 0.00 2.57
2822 2856 7.245419 TGTGTGGTGAATATTGTATCGAATG 57.755 36.000 0.00 0.00 0.00 2.67
2823 2857 6.483307 CCTGTGTGGTGAATATTGTATCGAAT 59.517 38.462 0.00 0.00 0.00 3.34
2824 2858 5.815222 CCTGTGTGGTGAATATTGTATCGAA 59.185 40.000 0.00 0.00 0.00 3.71
2825 2859 5.356426 CCTGTGTGGTGAATATTGTATCGA 58.644 41.667 0.00 0.00 0.00 3.59
2826 2860 4.511454 CCCTGTGTGGTGAATATTGTATCG 59.489 45.833 0.00 0.00 0.00 2.92
2827 2861 4.275936 GCCCTGTGTGGTGAATATTGTATC 59.724 45.833 0.00 0.00 0.00 2.24
2828 2862 4.207165 GCCCTGTGTGGTGAATATTGTAT 58.793 43.478 0.00 0.00 0.00 2.29
2829 2863 3.616219 GCCCTGTGTGGTGAATATTGTA 58.384 45.455 0.00 0.00 0.00 2.41
2830 2864 2.446435 GCCCTGTGTGGTGAATATTGT 58.554 47.619 0.00 0.00 0.00 2.71
2831 2865 1.401552 CGCCCTGTGTGGTGAATATTG 59.598 52.381 0.00 0.00 38.18 1.90
2832 2866 1.681780 CCGCCCTGTGTGGTGAATATT 60.682 52.381 0.00 0.00 39.95 1.28
2833 2867 0.107214 CCGCCCTGTGTGGTGAATAT 60.107 55.000 0.00 0.00 39.95 1.28
2834 2868 1.298340 CCGCCCTGTGTGGTGAATA 59.702 57.895 0.00 0.00 39.95 1.75
2835 2869 2.034066 CCGCCCTGTGTGGTGAAT 59.966 61.111 0.00 0.00 39.95 2.57
2841 2875 0.107703 ATGATGTACCGCCCTGTGTG 60.108 55.000 0.00 0.00 0.00 3.82
2842 2876 0.618458 AATGATGTACCGCCCTGTGT 59.382 50.000 0.00 0.00 0.00 3.72
2843 2877 1.750193 AAATGATGTACCGCCCTGTG 58.250 50.000 0.00 0.00 0.00 3.66
2844 2878 2.237643 TGTAAATGATGTACCGCCCTGT 59.762 45.455 0.00 0.00 0.00 4.00
2845 2879 2.912771 TGTAAATGATGTACCGCCCTG 58.087 47.619 0.00 0.00 0.00 4.45
2846 2880 3.199071 TCTTGTAAATGATGTACCGCCCT 59.801 43.478 0.00 0.00 0.00 5.19
2847 2881 3.537580 TCTTGTAAATGATGTACCGCCC 58.462 45.455 0.00 0.00 0.00 6.13
2848 2882 5.751243 ATTCTTGTAAATGATGTACCGCC 57.249 39.130 0.00 0.00 0.00 6.13
2849 2883 6.259167 TGGTATTCTTGTAAATGATGTACCGC 59.741 38.462 0.00 0.00 0.00 5.68
2850 2884 7.780008 TGGTATTCTTGTAAATGATGTACCG 57.220 36.000 0.00 0.00 0.00 4.02
2851 2885 9.561069 AGATGGTATTCTTGTAAATGATGTACC 57.439 33.333 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.