Multiple sequence alignment - TraesCS6D01G230200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G230200 chr6D 100.000 2880 0 0 1 2880 323043178 323046057 0.000000e+00 5319.0
1 TraesCS6D01G230200 chr6D 96.610 354 12 0 1 354 452382008 452381655 3.200000e-164 588.0
2 TraesCS6D01G230200 chr6D 93.909 197 9 1 351 544 150071224 150071420 7.800000e-76 294.0
3 TraesCS6D01G230200 chr6D 93.467 199 10 1 348 543 8643475 8643673 2.810000e-75 292.0
4 TraesCS6D01G230200 chr6A 93.284 2025 68 27 543 2527 460630819 460632815 0.000000e+00 2924.0
5 TraesCS6D01G230200 chr6B 95.018 1706 48 10 775 2455 500523673 500521980 0.000000e+00 2645.0
6 TraesCS6D01G230200 chr6B 89.130 230 8 2 543 755 500526298 500526069 1.320000e-68 270.0
7 TraesCS6D01G230200 chr6B 90.909 77 1 3 2457 2527 500520172 500520096 6.570000e-17 99.0
8 TraesCS6D01G230200 chr5B 90.128 547 43 9 1 540 485111797 485112339 0.000000e+00 701.0
9 TraesCS6D01G230200 chr5B 87.971 557 39 17 1 540 44214814 44215359 1.460000e-177 632.0
10 TraesCS6D01G230200 chr1A 89.890 544 47 6 1 540 501429393 501428854 0.000000e+00 693.0
11 TraesCS6D01G230200 chrUn 96.610 354 12 0 1 354 24432459 24432106 3.200000e-164 588.0
12 TraesCS6D01G230200 chrUn 91.787 207 13 2 351 554 29638052 29638257 4.700000e-73 285.0
13 TraesCS6D01G230200 chr7D 96.610 354 12 0 1 354 99810270 99810623 3.200000e-164 588.0
14 TraesCS6D01G230200 chr7D 96.610 354 12 0 1 354 497222291 497221938 3.200000e-164 588.0
15 TraesCS6D01G230200 chr7D 96.610 354 12 0 1 354 585327092 585326739 3.200000e-164 588.0
16 TraesCS6D01G230200 chr7D 76.667 180 22 6 2673 2832 506884224 506884045 6.610000e-12 82.4
17 TraesCS6D01G230200 chr7D 80.000 110 9 3 2673 2769 220025354 220025245 5.150000e-08 69.4
18 TraesCS6D01G230200 chr1D 96.610 354 12 0 1 354 494034613 494034260 3.200000e-164 588.0
19 TraesCS6D01G230200 chr2D 93.970 199 9 1 351 546 600129837 600130035 6.030000e-77 298.0
20 TraesCS6D01G230200 chr5D 93.532 201 10 1 351 548 497314280 497314480 2.170000e-76 296.0
21 TraesCS6D01G230200 chr4D 94.330 194 8 1 351 541 506482573 506482766 7.800000e-76 294.0
22 TraesCS6D01G230200 chr3B 82.812 128 17 3 2707 2829 673096207 673096080 3.030000e-20 110.0
23 TraesCS6D01G230200 chr3B 84.694 98 10 4 2708 2800 60020556 60020459 3.060000e-15 93.5
24 TraesCS6D01G230200 chr7B 79.042 167 14 16 2675 2829 451351561 451351718 8.500000e-16 95.3
25 TraesCS6D01G230200 chr7B 96.875 32 0 1 2675 2706 609749221 609749191 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G230200 chr6D 323043178 323046057 2879 False 5319.000000 5319 100.000000 1 2880 1 chr6D.!!$F3 2879
1 TraesCS6D01G230200 chr6A 460630819 460632815 1996 False 2924.000000 2924 93.284000 543 2527 1 chr6A.!!$F1 1984
2 TraesCS6D01G230200 chr6B 500520096 500526298 6202 True 1004.666667 2645 91.685667 543 2527 3 chr6B.!!$R1 1984
3 TraesCS6D01G230200 chr5B 485111797 485112339 542 False 701.000000 701 90.128000 1 540 1 chr5B.!!$F2 539
4 TraesCS6D01G230200 chr5B 44214814 44215359 545 False 632.000000 632 87.971000 1 540 1 chr5B.!!$F1 539
5 TraesCS6D01G230200 chr1A 501428854 501429393 539 True 693.000000 693 89.890000 1 540 1 chr1A.!!$R1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
944 3376 0.035176 TACTTTACCACGCCACCACC 59.965 55.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2811 7090 0.179108 GATGTGGCTAGGTCACCGTC 60.179 60.0 0.0 0.0 37.35 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.312180 GCACTAAGTAAACCACACCTACATAC 59.688 42.308 0.00 0.00 0.00 2.39
113 119 5.975988 TCCTCCCAAATTACTAAGCTCAT 57.024 39.130 0.00 0.00 0.00 2.90
255 261 2.028748 GGGCAAAATGTGTGATGAGCTT 60.029 45.455 0.00 0.00 0.00 3.74
259 265 4.320714 GCAAAATGTGTGATGAGCTTGAGA 60.321 41.667 0.00 0.00 0.00 3.27
266 272 3.580022 TGTGATGAGCTTGAGAGGAAGAA 59.420 43.478 0.00 0.00 0.00 2.52
285 292 2.246091 AGGGAAGAACAGAGAGGAGG 57.754 55.000 0.00 0.00 0.00 4.30
315 328 0.169230 GAAGAACAGAGCGAGCTCGA 59.831 55.000 38.74 0.00 46.90 4.04
321 334 2.112198 AGAGCGAGCTCGAGTGGAG 61.112 63.158 38.74 9.32 46.90 3.86
345 358 3.447950 AGGGTTTATGTAGGACGACCTT 58.552 45.455 12.68 0.00 45.36 3.50
346 359 3.842436 AGGGTTTATGTAGGACGACCTTT 59.158 43.478 12.68 0.46 45.36 3.11
349 362 5.105187 GGGTTTATGTAGGACGACCTTTAGT 60.105 44.000 12.68 0.00 45.36 2.24
352 365 6.699575 TTATGTAGGACGACCTTTAGTACC 57.300 41.667 12.68 0.00 45.36 3.34
374 387 0.250858 CAACATCCTGCCACCACTCA 60.251 55.000 0.00 0.00 0.00 3.41
388 401 2.560105 ACCACTCACTTTAGTACCGGTC 59.440 50.000 12.40 2.55 0.00 4.79
403 416 4.651008 GTCCGTGGCACGAACCGA 62.651 66.667 38.91 24.79 46.05 4.69
414 427 1.659098 CACGAACCGATGCTAAAGGTC 59.341 52.381 0.00 0.00 37.26 3.85
415 428 0.921347 CGAACCGATGCTAAAGGTCG 59.079 55.000 0.00 0.00 37.26 4.79
437 450 2.674747 GCCACGAACCGGTACTAATGAA 60.675 50.000 8.00 0.00 0.00 2.57
495 509 1.812571 ACATTAGTGCCGGCTCAAAAG 59.187 47.619 29.70 16.92 0.00 2.27
496 510 1.812571 CATTAGTGCCGGCTCAAAAGT 59.187 47.619 29.70 12.36 0.00 2.66
592 609 3.562141 TCACAAACAACACCATAACTCCG 59.438 43.478 0.00 0.00 0.00 4.63
628 668 1.197036 GGCTGCCTCGTTTTAACTGTC 59.803 52.381 12.43 0.00 0.00 3.51
741 782 1.371183 TGCACACCAGTGGAGTAGC 59.629 57.895 18.40 19.18 45.98 3.58
774 815 6.721571 TTGGCGTAGTAATTCTTCTTCTTG 57.278 37.500 0.00 0.00 0.00 3.02
944 3376 0.035176 TACTTTACCACGCCACCACC 59.965 55.000 0.00 0.00 0.00 4.61
945 3377 1.228003 CTTTACCACGCCACCACCA 60.228 57.895 0.00 0.00 0.00 4.17
946 3378 1.512156 CTTTACCACGCCACCACCAC 61.512 60.000 0.00 0.00 0.00 4.16
947 3379 2.962142 TTTACCACGCCACCACCACC 62.962 60.000 0.00 0.00 0.00 4.61
972 3404 0.246086 CACTCAGTCTCAGTCTGCCC 59.754 60.000 0.00 0.00 33.48 5.36
979 3411 2.283173 TCAGTCTGCCCAGCGAGA 60.283 61.111 0.00 0.00 0.00 4.04
1141 3573 2.167219 CGATGACGTCGCTGCCAAT 61.167 57.895 11.62 0.00 44.33 3.16
1179 3611 3.462678 GTCGCACCTCCTCCTCCC 61.463 72.222 0.00 0.00 0.00 4.30
1834 4269 1.079819 CGAGCTGGTGGTGTTCGAT 60.080 57.895 0.00 0.00 33.38 3.59
1972 4418 6.513806 TCAACTGCATGCATGTAATAGTTT 57.486 33.333 26.79 13.33 0.00 2.66
1991 4437 2.097680 TTTGGTAAATCCCCGTCGAC 57.902 50.000 5.18 5.18 34.77 4.20
2041 4487 2.277084 CGGGTTAAGGCATGTACAGTC 58.723 52.381 0.33 0.00 0.00 3.51
2043 4489 1.664151 GGTTAAGGCATGTACAGTCGC 59.336 52.381 0.33 3.89 0.00 5.19
2044 4490 1.664151 GTTAAGGCATGTACAGTCGCC 59.336 52.381 20.64 20.64 45.23 5.54
2164 4610 1.095228 CAGTCGCACTGTGGTTGGTT 61.095 55.000 10.21 0.00 41.19 3.67
2165 4611 0.393808 AGTCGCACTGTGGTTGGTTT 60.394 50.000 10.21 0.00 0.00 3.27
2166 4612 1.134340 AGTCGCACTGTGGTTGGTTTA 60.134 47.619 10.21 0.00 0.00 2.01
2287 4748 3.980134 GCATCGTATCAGTGTCATCAGAG 59.020 47.826 0.00 0.00 0.00 3.35
2289 4750 3.886123 TCGTATCAGTGTCATCAGAGGA 58.114 45.455 0.00 0.00 0.00 3.71
2299 4760 3.423162 ATCAGAGGAGAGCGCGTGC 62.423 63.158 14.39 14.39 43.24 5.34
2371 4838 1.816537 GCTGATCGGCCTGTGAGTA 59.183 57.895 16.13 0.00 0.00 2.59
2381 4848 1.227380 CTGTGAGTATGAGCCGGGC 60.227 63.158 12.11 12.11 0.00 6.13
2455 4922 2.688507 TCAATTCAGGCGTCTCTGTTC 58.311 47.619 0.00 0.00 36.25 3.18
2538 6817 4.716003 GCCTACGGCTTTTCAGGT 57.284 55.556 0.00 0.00 46.69 4.00
2539 6818 2.467962 GCCTACGGCTTTTCAGGTC 58.532 57.895 0.00 0.00 46.69 3.85
2540 6819 0.036294 GCCTACGGCTTTTCAGGTCT 60.036 55.000 0.00 0.00 46.69 3.85
2541 6820 1.610886 GCCTACGGCTTTTCAGGTCTT 60.611 52.381 0.00 0.00 46.69 3.01
2542 6821 2.076863 CCTACGGCTTTTCAGGTCTTG 58.923 52.381 0.00 0.00 0.00 3.02
2543 6822 2.076863 CTACGGCTTTTCAGGTCTTGG 58.923 52.381 0.00 0.00 0.00 3.61
2544 6823 0.182775 ACGGCTTTTCAGGTCTTGGT 59.817 50.000 0.00 0.00 0.00 3.67
2545 6824 0.875059 CGGCTTTTCAGGTCTTGGTC 59.125 55.000 0.00 0.00 0.00 4.02
2546 6825 1.813862 CGGCTTTTCAGGTCTTGGTCA 60.814 52.381 0.00 0.00 0.00 4.02
2547 6826 1.609072 GGCTTTTCAGGTCTTGGTCAC 59.391 52.381 0.00 0.00 0.00 3.67
2548 6827 1.264288 GCTTTTCAGGTCTTGGTCACG 59.736 52.381 0.00 0.00 0.00 4.35
2549 6828 1.873591 CTTTTCAGGTCTTGGTCACGG 59.126 52.381 0.00 0.00 0.00 4.94
2550 6829 0.834612 TTTCAGGTCTTGGTCACGGT 59.165 50.000 0.00 0.00 0.00 4.83
2551 6830 1.707106 TTCAGGTCTTGGTCACGGTA 58.293 50.000 0.00 0.00 0.00 4.02
2552 6831 1.707106 TCAGGTCTTGGTCACGGTAA 58.293 50.000 0.00 0.00 0.00 2.85
2553 6832 2.040939 TCAGGTCTTGGTCACGGTAAA 58.959 47.619 0.00 0.00 0.00 2.01
2554 6833 2.036733 TCAGGTCTTGGTCACGGTAAAG 59.963 50.000 0.00 0.00 0.00 1.85
2555 6834 1.346722 AGGTCTTGGTCACGGTAAAGG 59.653 52.381 0.00 0.00 0.00 3.11
2556 6835 1.609841 GGTCTTGGTCACGGTAAAGGG 60.610 57.143 0.00 0.00 0.00 3.95
2557 6836 1.071228 GTCTTGGTCACGGTAAAGGGT 59.929 52.381 0.00 0.00 0.00 4.34
2558 6837 1.071071 TCTTGGTCACGGTAAAGGGTG 59.929 52.381 0.00 0.00 35.50 4.61
2559 6838 0.535553 TTGGTCACGGTAAAGGGTGC 60.536 55.000 0.00 0.00 34.20 5.01
2560 6839 2.030958 GGTCACGGTAAAGGGTGCG 61.031 63.158 0.00 0.00 34.20 5.34
2561 6840 2.357760 TCACGGTAAAGGGTGCGC 60.358 61.111 0.00 0.00 34.20 6.09
2562 6841 3.784412 CACGGTAAAGGGTGCGCG 61.784 66.667 0.00 0.00 0.00 6.86
2567 6846 4.338710 TAAAGGGTGCGCGGGCTT 62.339 61.111 25.62 13.12 40.82 4.35
2576 6855 3.645975 CGCGGGCTTGTGTCGTTT 61.646 61.111 0.00 0.00 0.00 3.60
2577 6856 2.051345 GCGGGCTTGTGTCGTTTG 60.051 61.111 0.00 0.00 0.00 2.93
2578 6857 2.051345 CGGGCTTGTGTCGTTTGC 60.051 61.111 0.00 0.00 0.00 3.68
2579 6858 2.051345 GGGCTTGTGTCGTTTGCG 60.051 61.111 0.00 0.00 39.92 4.85
2580 6859 2.539338 GGGCTTGTGTCGTTTGCGA 61.539 57.895 0.00 0.00 45.79 5.10
2595 6874 4.478195 CGAGGAGCAACCGTACTG 57.522 61.111 0.00 0.00 44.74 2.74
2596 6875 1.585006 CGAGGAGCAACCGTACTGT 59.415 57.895 0.00 0.00 44.74 3.55
2597 6876 0.456312 CGAGGAGCAACCGTACTGTC 60.456 60.000 0.00 0.00 44.74 3.51
2598 6877 0.889306 GAGGAGCAACCGTACTGTCT 59.111 55.000 0.00 0.00 44.74 3.41
2599 6878 0.603569 AGGAGCAACCGTACTGTCTG 59.396 55.000 0.00 0.00 44.74 3.51
2600 6879 0.317479 GGAGCAACCGTACTGTCTGT 59.683 55.000 0.00 0.00 0.00 3.41
2601 6880 1.419374 GAGCAACCGTACTGTCTGTG 58.581 55.000 0.00 0.00 0.00 3.66
2602 6881 0.750850 AGCAACCGTACTGTCTGTGT 59.249 50.000 0.00 0.00 0.00 3.72
2603 6882 1.138266 AGCAACCGTACTGTCTGTGTT 59.862 47.619 0.00 0.00 0.00 3.32
2604 6883 1.937899 GCAACCGTACTGTCTGTGTTT 59.062 47.619 0.00 0.00 0.00 2.83
2605 6884 2.286184 GCAACCGTACTGTCTGTGTTTG 60.286 50.000 0.00 0.00 0.00 2.93
2606 6885 1.578583 ACCGTACTGTCTGTGTTTGC 58.421 50.000 0.00 0.00 0.00 3.68
2607 6886 1.134640 ACCGTACTGTCTGTGTTTGCA 60.135 47.619 0.00 0.00 0.00 4.08
2608 6887 1.937223 CCGTACTGTCTGTGTTTGCAA 59.063 47.619 0.00 0.00 0.00 4.08
2609 6888 2.286184 CCGTACTGTCTGTGTTTGCAAC 60.286 50.000 0.00 0.00 0.00 4.17
2610 6889 2.596575 CGTACTGTCTGTGTTTGCAACG 60.597 50.000 0.00 0.00 0.00 4.10
2611 6890 1.732941 ACTGTCTGTGTTTGCAACGA 58.267 45.000 0.00 0.00 0.00 3.85
2612 6891 2.080693 ACTGTCTGTGTTTGCAACGAA 58.919 42.857 0.00 0.00 0.00 3.85
2613 6892 2.486203 ACTGTCTGTGTTTGCAACGAAA 59.514 40.909 0.00 0.00 0.00 3.46
2614 6893 3.128589 ACTGTCTGTGTTTGCAACGAAAT 59.871 39.130 0.00 0.00 0.00 2.17
2615 6894 4.103365 TGTCTGTGTTTGCAACGAAATT 57.897 36.364 0.00 0.00 0.00 1.82
2616 6895 3.856521 TGTCTGTGTTTGCAACGAAATTG 59.143 39.130 0.00 0.00 41.69 2.32
2640 6919 4.748102 CACAATATGCCTCAAAATCCATGC 59.252 41.667 0.00 0.00 0.00 4.06
2641 6920 3.928727 ATATGCCTCAAAATCCATGCG 57.071 42.857 0.00 0.00 0.00 4.73
2642 6921 0.748450 ATGCCTCAAAATCCATGCGG 59.252 50.000 0.00 0.00 0.00 5.69
2656 6935 5.413309 TCCATGCGGATTTAATGGTTTTT 57.587 34.783 0.00 0.00 41.41 1.94
2685 6964 5.632034 AAAAACCAGTCCTAAGTCTCAGT 57.368 39.130 0.00 0.00 0.00 3.41
2686 6965 4.875561 AAACCAGTCCTAAGTCTCAGTC 57.124 45.455 0.00 0.00 0.00 3.51
2687 6966 2.438411 ACCAGTCCTAAGTCTCAGTCG 58.562 52.381 0.00 0.00 0.00 4.18
2688 6967 2.040012 ACCAGTCCTAAGTCTCAGTCGA 59.960 50.000 0.00 0.00 0.00 4.20
2689 6968 2.420722 CCAGTCCTAAGTCTCAGTCGAC 59.579 54.545 7.70 7.70 0.00 4.20
2690 6969 3.340034 CAGTCCTAAGTCTCAGTCGACT 58.660 50.000 13.58 13.58 45.73 4.18
2691 6970 3.126171 CAGTCCTAAGTCTCAGTCGACTG 59.874 52.174 34.76 34.76 43.14 3.51
2702 6981 3.277360 GTCGACTGAGACTTCGTCG 57.723 57.895 8.70 16.69 44.21 5.12
2703 6982 0.788995 GTCGACTGAGACTTCGTCGA 59.211 55.000 19.73 19.73 46.48 4.20
2704 6983 1.723220 TCGACTGAGACTTCGTCGAT 58.277 50.000 19.73 0.00 45.26 3.59
2705 6984 1.393883 TCGACTGAGACTTCGTCGATG 59.606 52.381 19.73 6.59 45.26 3.84
2706 6985 1.540407 GACTGAGACTTCGTCGATGC 58.460 55.000 7.96 2.09 37.67 3.91
2707 6986 1.131504 GACTGAGACTTCGTCGATGCT 59.868 52.381 7.96 6.45 37.67 3.79
2708 6987 2.352034 GACTGAGACTTCGTCGATGCTA 59.648 50.000 7.96 0.00 37.67 3.49
2709 6988 2.946329 ACTGAGACTTCGTCGATGCTAT 59.054 45.455 7.96 0.00 37.67 2.97
2710 6989 4.127907 ACTGAGACTTCGTCGATGCTATA 58.872 43.478 7.96 0.68 37.67 1.31
2711 6990 4.757657 ACTGAGACTTCGTCGATGCTATAT 59.242 41.667 7.96 0.00 37.67 0.86
2712 6991 5.106869 ACTGAGACTTCGTCGATGCTATATC 60.107 44.000 7.96 0.00 37.67 1.63
2713 6992 4.755123 TGAGACTTCGTCGATGCTATATCA 59.245 41.667 7.96 0.00 37.67 2.15
2714 6993 5.106908 TGAGACTTCGTCGATGCTATATCAG 60.107 44.000 7.96 0.00 37.67 2.90
2715 6994 4.757657 AGACTTCGTCGATGCTATATCAGT 59.242 41.667 7.96 0.00 37.67 3.41
2716 6995 4.788690 ACTTCGTCGATGCTATATCAGTG 58.211 43.478 7.96 0.00 0.00 3.66
2717 6996 4.515567 ACTTCGTCGATGCTATATCAGTGA 59.484 41.667 7.96 0.00 0.00 3.41
2718 6997 5.008712 ACTTCGTCGATGCTATATCAGTGAA 59.991 40.000 7.96 0.00 0.00 3.18
2719 6998 5.432885 TCGTCGATGCTATATCAGTGAAA 57.567 39.130 0.00 0.00 0.00 2.69
2720 6999 6.013842 TCGTCGATGCTATATCAGTGAAAT 57.986 37.500 0.00 0.00 0.00 2.17
2721 7000 6.086871 TCGTCGATGCTATATCAGTGAAATC 58.913 40.000 0.00 0.00 0.00 2.17
2722 7001 6.072452 TCGTCGATGCTATATCAGTGAAATCT 60.072 38.462 0.00 0.00 0.00 2.40
2723 7002 6.584184 CGTCGATGCTATATCAGTGAAATCTT 59.416 38.462 0.00 0.00 0.00 2.40
2724 7003 7.750903 CGTCGATGCTATATCAGTGAAATCTTA 59.249 37.037 0.00 0.00 0.00 2.10
2725 7004 8.855279 GTCGATGCTATATCAGTGAAATCTTAC 58.145 37.037 0.00 0.00 0.00 2.34
2726 7005 8.576442 TCGATGCTATATCAGTGAAATCTTACA 58.424 33.333 0.00 0.00 0.00 2.41
2727 7006 9.363763 CGATGCTATATCAGTGAAATCTTACAT 57.636 33.333 0.00 0.00 0.00 2.29
2784 7063 9.778741 TTTTTCTCTCTAACATGTTATGTCACT 57.221 29.630 18.35 0.00 44.07 3.41
2785 7064 9.778741 TTTTCTCTCTAACATGTTATGTCACTT 57.221 29.630 18.35 0.00 44.07 3.16
2786 7065 8.763049 TTCTCTCTAACATGTTATGTCACTTG 57.237 34.615 18.35 5.00 44.07 3.16
2787 7066 8.122472 TCTCTCTAACATGTTATGTCACTTGA 57.878 34.615 18.35 8.84 44.07 3.02
2788 7067 8.029522 TCTCTCTAACATGTTATGTCACTTGAC 58.970 37.037 18.35 2.19 44.07 3.18
2789 7068 7.896811 TCTCTAACATGTTATGTCACTTGACT 58.103 34.615 18.35 0.00 44.07 3.41
2790 7069 7.814587 TCTCTAACATGTTATGTCACTTGACTG 59.185 37.037 18.35 2.97 44.07 3.51
2791 7070 7.666623 TCTAACATGTTATGTCACTTGACTGA 58.333 34.615 18.35 5.20 44.07 3.41
2792 7071 8.314021 TCTAACATGTTATGTCACTTGACTGAT 58.686 33.333 18.35 0.00 44.07 2.90
2793 7072 9.586435 CTAACATGTTATGTCACTTGACTGATA 57.414 33.333 18.35 0.00 44.07 2.15
2794 7073 7.834068 ACATGTTATGTCACTTGACTGATAC 57.166 36.000 10.63 4.76 44.99 2.24
2795 7074 7.615403 ACATGTTATGTCACTTGACTGATACT 58.385 34.615 10.63 0.00 44.99 2.12
2796 7075 8.097038 ACATGTTATGTCACTTGACTGATACTT 58.903 33.333 10.63 0.82 44.99 2.24
2797 7076 7.889589 TGTTATGTCACTTGACTGATACTTG 57.110 36.000 10.63 0.00 44.99 3.16
2798 7077 6.873605 TGTTATGTCACTTGACTGATACTTGG 59.126 38.462 10.63 0.00 44.99 3.61
2799 7078 4.955811 TGTCACTTGACTGATACTTGGT 57.044 40.909 10.63 0.00 44.99 3.67
2800 7079 6.605471 ATGTCACTTGACTGATACTTGGTA 57.395 37.500 10.63 0.00 44.99 3.25
2801 7080 6.413783 TGTCACTTGACTGATACTTGGTAA 57.586 37.500 10.63 0.00 44.99 2.85
2802 7081 6.822442 TGTCACTTGACTGATACTTGGTAAA 58.178 36.000 10.63 0.00 44.99 2.01
2803 7082 7.450074 TGTCACTTGACTGATACTTGGTAAAT 58.550 34.615 10.63 0.00 44.99 1.40
2804 7083 7.602644 TGTCACTTGACTGATACTTGGTAAATC 59.397 37.037 10.63 0.00 44.99 2.17
2805 7084 7.819900 GTCACTTGACTGATACTTGGTAAATCT 59.180 37.037 1.92 0.00 41.65 2.40
2806 7085 8.035394 TCACTTGACTGATACTTGGTAAATCTC 58.965 37.037 0.00 0.00 0.00 2.75
2807 7086 7.819415 CACTTGACTGATACTTGGTAAATCTCA 59.181 37.037 0.00 0.00 0.00 3.27
2808 7087 8.037758 ACTTGACTGATACTTGGTAAATCTCAG 58.962 37.037 0.00 0.00 35.82 3.35
2809 7088 7.482169 TGACTGATACTTGGTAAATCTCAGT 57.518 36.000 9.83 9.83 43.19 3.41
2810 7089 7.995463 GACTGATACTTGGTAAATCTCAGTC 57.005 40.000 16.38 16.38 46.06 3.51
2811 7090 6.565234 ACTGATACTTGGTAAATCTCAGTCG 58.435 40.000 0.00 0.00 37.85 4.18
2812 7091 6.377429 ACTGATACTTGGTAAATCTCAGTCGA 59.623 38.462 0.00 0.00 37.85 4.20
2813 7092 6.561614 TGATACTTGGTAAATCTCAGTCGAC 58.438 40.000 7.70 7.70 0.00 4.20
2814 7093 3.834610 ACTTGGTAAATCTCAGTCGACG 58.165 45.455 10.46 5.48 0.00 5.12
2815 7094 2.933495 TGGTAAATCTCAGTCGACGG 57.067 50.000 10.46 10.03 0.00 4.79
2816 7095 2.165167 TGGTAAATCTCAGTCGACGGT 58.835 47.619 15.37 0.00 0.00 4.83
2817 7096 2.094906 TGGTAAATCTCAGTCGACGGTG 60.095 50.000 15.37 13.03 0.00 4.94
2818 7097 2.163010 GGTAAATCTCAGTCGACGGTGA 59.837 50.000 19.85 19.85 0.00 4.02
2819 7098 2.349297 AAATCTCAGTCGACGGTGAC 57.651 50.000 19.95 1.43 39.21 3.67
2820 7099 0.526662 AATCTCAGTCGACGGTGACC 59.473 55.000 19.95 0.00 39.77 4.02
2821 7100 0.322636 ATCTCAGTCGACGGTGACCT 60.323 55.000 19.95 5.51 39.77 3.85
2822 7101 0.322648 TCTCAGTCGACGGTGACCTA 59.677 55.000 15.37 0.00 39.77 3.08
2823 7102 0.727970 CTCAGTCGACGGTGACCTAG 59.272 60.000 15.37 0.73 39.77 3.02
2824 7103 1.136984 CAGTCGACGGTGACCTAGC 59.863 63.158 10.46 0.00 39.77 3.42
2825 7104 2.045131 AGTCGACGGTGACCTAGCC 61.045 63.158 10.46 0.00 39.77 3.93
2826 7105 2.034532 TCGACGGTGACCTAGCCA 59.965 61.111 0.00 0.00 0.00 4.75
2827 7106 2.181021 CGACGGTGACCTAGCCAC 59.819 66.667 0.00 5.28 0.00 5.01
2828 7107 2.632544 CGACGGTGACCTAGCCACA 61.633 63.158 0.00 0.00 36.31 4.17
2829 7108 1.898154 GACGGTGACCTAGCCACAT 59.102 57.895 0.00 3.59 36.31 3.21
2830 7109 0.179108 GACGGTGACCTAGCCACATC 60.179 60.000 0.00 7.92 36.31 3.06
2831 7110 1.144057 CGGTGACCTAGCCACATCC 59.856 63.158 0.00 4.36 36.31 3.51
2832 7111 1.613317 CGGTGACCTAGCCACATCCA 61.613 60.000 0.00 0.00 36.31 3.41
2833 7112 0.839946 GGTGACCTAGCCACATCCAT 59.160 55.000 13.26 0.00 36.31 3.41
2834 7113 2.047061 GGTGACCTAGCCACATCCATA 58.953 52.381 13.26 0.00 36.31 2.74
2835 7114 2.438021 GGTGACCTAGCCACATCCATAA 59.562 50.000 13.26 0.00 36.31 1.90
2836 7115 3.118038 GGTGACCTAGCCACATCCATAAA 60.118 47.826 13.26 0.00 36.31 1.40
2837 7116 4.523083 GTGACCTAGCCACATCCATAAAA 58.477 43.478 8.16 0.00 34.81 1.52
2838 7117 4.947388 GTGACCTAGCCACATCCATAAAAA 59.053 41.667 8.16 0.00 34.81 1.94
2861 7140 9.947433 AAAAATTGATGAATTGCAATCCTTAGA 57.053 25.926 13.38 0.00 33.87 2.10
2862 7141 9.595823 AAAATTGATGAATTGCAATCCTTAGAG 57.404 29.630 13.38 0.00 33.87 2.43
2863 7142 5.762825 TGATGAATTGCAATCCTTAGAGC 57.237 39.130 13.38 0.00 0.00 4.09
2864 7143 5.195185 TGATGAATTGCAATCCTTAGAGCA 58.805 37.500 13.38 0.00 34.79 4.26
2865 7144 5.831525 TGATGAATTGCAATCCTTAGAGCAT 59.168 36.000 13.38 6.56 36.80 3.79
2866 7145 5.762825 TGAATTGCAATCCTTAGAGCATC 57.237 39.130 13.38 2.99 36.80 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
204 210 3.766051 GTCAAGATTTGAAGGCCTCCATT 59.234 43.478 5.23 0.00 42.15 3.16
209 215 5.813513 AATTTGTCAAGATTTGAAGGCCT 57.186 34.783 0.00 0.00 42.15 5.19
255 261 3.580458 CTGTTCTTCCCTTCTTCCTCTCA 59.420 47.826 0.00 0.00 0.00 3.27
259 265 3.837731 CTCTCTGTTCTTCCCTTCTTCCT 59.162 47.826 0.00 0.00 0.00 3.36
266 272 1.273552 CCCTCCTCTCTGTTCTTCCCT 60.274 57.143 0.00 0.00 0.00 4.20
285 292 0.039764 CTGTTCTTCCCCTTTCCCCC 59.960 60.000 0.00 0.00 0.00 5.40
315 328 3.780850 CCTACATAAACCCTTCCTCCACT 59.219 47.826 0.00 0.00 0.00 4.00
321 334 3.431346 GGTCGTCCTACATAAACCCTTCC 60.431 52.174 0.00 0.00 0.00 3.46
345 358 2.093869 GGCAGGATGTTGTCGGTACTAA 60.094 50.000 0.00 0.00 39.31 2.24
346 359 1.479323 GGCAGGATGTTGTCGGTACTA 59.521 52.381 0.00 0.00 39.31 1.82
349 362 0.036765 GTGGCAGGATGTTGTCGGTA 60.037 55.000 0.00 0.00 39.31 4.02
352 365 1.302431 TGGTGGCAGGATGTTGTCG 60.302 57.895 0.00 0.00 39.31 4.35
374 387 0.890683 CCACGGACCGGTACTAAAGT 59.109 55.000 20.00 1.58 0.00 2.66
388 401 3.487202 CATCGGTTCGTGCCACGG 61.487 66.667 18.32 0.67 42.81 4.94
403 416 1.449601 CGTGGCCGACCTTTAGCAT 60.450 57.895 0.00 0.00 36.63 3.79
415 428 0.176449 ATTAGTACCGGTTCGTGGCC 59.824 55.000 15.04 0.00 0.00 5.36
472 486 0.673333 TGAGCCGGCACTAATGTGTG 60.673 55.000 31.54 0.00 45.44 3.82
523 540 7.526142 TCAGCTCTCACTAGTAGAAAAAGAA 57.474 36.000 3.59 0.00 0.00 2.52
524 541 7.309499 CCTTCAGCTCTCACTAGTAGAAAAAGA 60.309 40.741 3.59 0.56 0.00 2.52
540 557 1.131638 TGTGTTGGTCCTTCAGCTCT 58.868 50.000 0.00 0.00 0.00 4.09
541 558 1.967319 TTGTGTTGGTCCTTCAGCTC 58.033 50.000 0.00 0.00 0.00 4.09
592 609 2.185867 CCATGCATGTTGGCCTGC 59.814 61.111 24.58 5.93 36.88 4.85
628 668 4.150980 TGTTATTTTAGACCGCTGTTGACG 59.849 41.667 0.00 0.00 0.00 4.35
687 727 2.259511 GGCAAGGCTTTTCTGGCG 59.740 61.111 0.00 0.00 34.59 5.69
741 782 8.644318 AGAATTACTACGCCAATTTACTAGTG 57.356 34.615 5.39 0.00 0.00 2.74
863 3283 5.621104 CGGCAATTTGTATGCTCCAAACTTA 60.621 40.000 0.00 0.00 43.34 2.24
944 3376 1.181786 GAGACTGAGTGAGGGAGGTG 58.818 60.000 0.00 0.00 0.00 4.00
945 3377 0.780637 TGAGACTGAGTGAGGGAGGT 59.219 55.000 0.00 0.00 0.00 3.85
946 3378 1.272425 ACTGAGACTGAGTGAGGGAGG 60.272 57.143 0.00 0.00 0.00 4.30
947 3379 2.091541 GACTGAGACTGAGTGAGGGAG 58.908 57.143 0.00 0.00 0.00 4.30
948 3380 1.707989 AGACTGAGACTGAGTGAGGGA 59.292 52.381 0.00 0.00 0.00 4.20
949 3381 1.818060 CAGACTGAGACTGAGTGAGGG 59.182 57.143 6.04 0.00 37.54 4.30
972 3404 1.515952 CTCGTCTTGGCTCTCGCTG 60.516 63.158 0.00 0.00 36.09 5.18
979 3411 1.291588 CTGCTGTCTCGTCTTGGCT 59.708 57.895 0.00 0.00 0.00 4.75
983 3415 1.068194 GTAGTGCTGCTGTCTCGTCTT 60.068 52.381 0.00 0.00 0.00 3.01
1102 3534 1.672030 CGCCATGGACTTGCAGTGA 60.672 57.895 18.40 0.00 0.00 3.41
1211 3643 4.131088 GCACGAGGAGACGTCCCC 62.131 72.222 13.01 10.64 45.26 4.81
1266 3698 1.979155 GCCTTGGGCTTCTTGGTCC 60.979 63.158 0.80 0.00 46.69 4.46
1972 4418 1.338960 GGTCGACGGGGATTTACCAAA 60.339 52.381 9.92 0.00 41.20 3.28
1991 4437 1.079127 GACTGGGTGTGTGATCGGG 60.079 63.158 0.00 0.00 0.00 5.14
2024 4470 1.664151 GGCGACTGTACATGCCTTAAC 59.336 52.381 20.66 1.24 44.16 2.01
2043 4489 1.671054 CAAGTGCAGGGTGGTACGG 60.671 63.158 0.00 0.00 0.00 4.02
2044 4490 1.671054 CCAAGTGCAGGGTGGTACG 60.671 63.158 0.00 0.00 0.00 3.67
2164 4610 3.451902 ACGACAACTCCCGGGAATAATAA 59.548 43.478 26.68 0.00 0.00 1.40
2165 4611 3.033184 ACGACAACTCCCGGGAATAATA 58.967 45.455 26.68 0.00 0.00 0.98
2166 4612 1.835531 ACGACAACTCCCGGGAATAAT 59.164 47.619 26.68 10.89 0.00 1.28
2266 4727 4.276926 TCCTCTGATGACACTGATACGATG 59.723 45.833 0.00 0.00 0.00 3.84
2267 4728 4.464947 TCCTCTGATGACACTGATACGAT 58.535 43.478 0.00 0.00 0.00 3.73
2268 4729 3.879892 CTCCTCTGATGACACTGATACGA 59.120 47.826 0.00 0.00 0.00 3.43
2269 4730 3.879892 TCTCCTCTGATGACACTGATACG 59.120 47.826 0.00 0.00 0.00 3.06
2270 4731 4.261572 GCTCTCCTCTGATGACACTGATAC 60.262 50.000 0.00 0.00 0.00 2.24
2299 4760 4.856801 CGGCGTCCCATTCCCAGG 62.857 72.222 0.00 0.00 0.00 4.45
2326 4793 4.191015 GTCCATCCCCTTCCCCGC 62.191 72.222 0.00 0.00 0.00 6.13
2381 4848 1.079405 TCCTCTTTAACGCGCCTGG 60.079 57.895 5.73 0.00 0.00 4.45
2455 4922 0.452184 AGTAGAGACATCACGTGGCG 59.548 55.000 17.00 9.65 42.34 5.69
2527 6806 1.609072 GTGACCAAGACCTGAAAAGCC 59.391 52.381 0.00 0.00 0.00 4.35
2528 6807 1.264288 CGTGACCAAGACCTGAAAAGC 59.736 52.381 0.00 0.00 0.00 3.51
2529 6808 1.873591 CCGTGACCAAGACCTGAAAAG 59.126 52.381 0.00 0.00 0.00 2.27
2530 6809 1.210967 ACCGTGACCAAGACCTGAAAA 59.789 47.619 0.00 0.00 0.00 2.29
2531 6810 0.834612 ACCGTGACCAAGACCTGAAA 59.165 50.000 0.00 0.00 0.00 2.69
2532 6811 1.707106 TACCGTGACCAAGACCTGAA 58.293 50.000 0.00 0.00 0.00 3.02
2533 6812 1.707106 TTACCGTGACCAAGACCTGA 58.293 50.000 0.00 0.00 0.00 3.86
2534 6813 2.413837 CTTTACCGTGACCAAGACCTG 58.586 52.381 0.00 0.00 0.00 4.00
2535 6814 1.346722 CCTTTACCGTGACCAAGACCT 59.653 52.381 0.00 0.00 0.00 3.85
2536 6815 1.609841 CCCTTTACCGTGACCAAGACC 60.610 57.143 0.00 0.00 0.00 3.85
2537 6816 1.071228 ACCCTTTACCGTGACCAAGAC 59.929 52.381 0.00 0.00 0.00 3.01
2538 6817 1.071071 CACCCTTTACCGTGACCAAGA 59.929 52.381 0.00 0.00 31.36 3.02
2539 6818 1.519408 CACCCTTTACCGTGACCAAG 58.481 55.000 0.00 0.00 31.36 3.61
2540 6819 0.535553 GCACCCTTTACCGTGACCAA 60.536 55.000 0.00 0.00 31.36 3.67
2541 6820 1.071814 GCACCCTTTACCGTGACCA 59.928 57.895 0.00 0.00 31.36 4.02
2542 6821 2.030958 CGCACCCTTTACCGTGACC 61.031 63.158 0.00 0.00 31.36 4.02
2543 6822 2.674084 GCGCACCCTTTACCGTGAC 61.674 63.158 0.30 0.00 31.36 3.67
2544 6823 2.357760 GCGCACCCTTTACCGTGA 60.358 61.111 0.30 0.00 31.36 4.35
2545 6824 3.784412 CGCGCACCCTTTACCGTG 61.784 66.667 8.75 0.00 0.00 4.94
2550 6829 4.338710 AAGCCCGCGCACCCTTTA 62.339 61.111 8.75 0.00 37.52 1.85
2559 6838 3.645975 AAACGACACAAGCCCGCG 61.646 61.111 0.00 0.00 0.00 6.46
2560 6839 2.051345 CAAACGACACAAGCCCGC 60.051 61.111 0.00 0.00 0.00 6.13
2561 6840 2.051345 GCAAACGACACAAGCCCG 60.051 61.111 0.00 0.00 0.00 6.13
2562 6841 2.051345 CGCAAACGACACAAGCCC 60.051 61.111 0.00 0.00 43.93 5.19
2563 6842 1.082756 CTCGCAAACGACACAAGCC 60.083 57.895 0.00 0.00 45.12 4.35
2564 6843 1.082756 CCTCGCAAACGACACAAGC 60.083 57.895 0.00 0.00 45.12 4.01
2565 6844 0.508641 CTCCTCGCAAACGACACAAG 59.491 55.000 0.00 0.00 45.12 3.16
2566 6845 1.495584 GCTCCTCGCAAACGACACAA 61.496 55.000 0.00 0.00 45.12 3.33
2567 6846 1.954146 GCTCCTCGCAAACGACACA 60.954 57.895 0.00 0.00 45.12 3.72
2568 6847 2.853914 GCTCCTCGCAAACGACAC 59.146 61.111 0.00 0.00 45.12 3.67
2577 6856 1.805945 CAGTACGGTTGCTCCTCGC 60.806 63.158 0.00 0.00 39.77 5.03
2578 6857 0.456312 GACAGTACGGTTGCTCCTCG 60.456 60.000 0.00 0.00 0.00 4.63
2579 6858 0.889306 AGACAGTACGGTTGCTCCTC 59.111 55.000 0.00 0.00 0.00 3.71
2580 6859 0.603569 CAGACAGTACGGTTGCTCCT 59.396 55.000 0.00 0.00 0.00 3.69
2581 6860 0.317479 ACAGACAGTACGGTTGCTCC 59.683 55.000 0.00 0.00 0.00 4.70
2582 6861 1.269621 ACACAGACAGTACGGTTGCTC 60.270 52.381 0.00 0.00 0.00 4.26
2583 6862 0.750850 ACACAGACAGTACGGTTGCT 59.249 50.000 0.00 0.00 0.00 3.91
2584 6863 1.578583 AACACAGACAGTACGGTTGC 58.421 50.000 0.00 0.00 0.00 4.17
2585 6864 2.286184 GCAAACACAGACAGTACGGTTG 60.286 50.000 0.00 3.81 0.00 3.77
2586 6865 1.937899 GCAAACACAGACAGTACGGTT 59.062 47.619 0.00 0.00 0.00 4.44
2587 6866 1.134640 TGCAAACACAGACAGTACGGT 60.135 47.619 0.00 0.00 0.00 4.83
2588 6867 1.577468 TGCAAACACAGACAGTACGG 58.423 50.000 0.00 0.00 0.00 4.02
2617 6896 4.748102 GCATGGATTTTGAGGCATATTGTG 59.252 41.667 0.00 0.00 0.00 3.33
2618 6897 4.500205 CGCATGGATTTTGAGGCATATTGT 60.500 41.667 0.00 0.00 0.00 2.71
2619 6898 3.985279 CGCATGGATTTTGAGGCATATTG 59.015 43.478 0.00 0.00 0.00 1.90
2620 6899 3.006110 CCGCATGGATTTTGAGGCATATT 59.994 43.478 0.00 0.00 37.49 1.28
2621 6900 2.559668 CCGCATGGATTTTGAGGCATAT 59.440 45.455 0.00 0.00 37.49 1.78
2622 6901 1.955778 CCGCATGGATTTTGAGGCATA 59.044 47.619 0.00 0.00 37.49 3.14
2623 6902 0.748450 CCGCATGGATTTTGAGGCAT 59.252 50.000 0.00 0.00 37.49 4.40
2624 6903 0.323269 TCCGCATGGATTTTGAGGCA 60.323 50.000 0.00 0.00 40.17 4.75
2625 6904 2.492418 TCCGCATGGATTTTGAGGC 58.508 52.632 0.00 0.00 40.17 4.70
2663 6942 5.612351 GACTGAGACTTAGGACTGGTTTTT 58.388 41.667 0.00 0.00 0.00 1.94
2664 6943 4.262079 CGACTGAGACTTAGGACTGGTTTT 60.262 45.833 0.00 0.00 0.00 2.43
2665 6944 3.256136 CGACTGAGACTTAGGACTGGTTT 59.744 47.826 0.00 0.00 0.00 3.27
2666 6945 2.820787 CGACTGAGACTTAGGACTGGTT 59.179 50.000 0.00 0.00 0.00 3.67
2667 6946 2.040012 TCGACTGAGACTTAGGACTGGT 59.960 50.000 0.00 0.00 0.00 4.00
2668 6947 2.420722 GTCGACTGAGACTTAGGACTGG 59.579 54.545 8.70 0.00 38.09 4.00
2669 6948 3.750639 GTCGACTGAGACTTAGGACTG 57.249 52.381 8.70 0.00 38.09 3.51
2681 6960 1.880271 ACGAAGTCTCAGTCGACTGA 58.120 50.000 38.24 38.24 44.92 3.41
2695 6974 5.035784 TCACTGATATAGCATCGACGAAG 57.964 43.478 0.00 0.00 0.00 3.79
2696 6975 5.432885 TTCACTGATATAGCATCGACGAA 57.567 39.130 0.00 0.00 0.00 3.85
2697 6976 5.432885 TTTCACTGATATAGCATCGACGA 57.567 39.130 0.00 0.00 0.00 4.20
2698 6977 6.089476 AGATTTCACTGATATAGCATCGACG 58.911 40.000 0.00 0.00 0.00 5.12
2699 6978 7.881643 AAGATTTCACTGATATAGCATCGAC 57.118 36.000 0.00 0.00 0.00 4.20
2700 6979 8.576442 TGTAAGATTTCACTGATATAGCATCGA 58.424 33.333 0.00 0.00 0.00 3.59
2701 6980 8.748380 TGTAAGATTTCACTGATATAGCATCG 57.252 34.615 0.00 0.00 0.00 3.84
2758 7037 9.778741 AGTGACATAACATGTTAGAGAGAAAAA 57.221 29.630 22.03 0.00 45.03 1.94
2759 7038 9.778741 AAGTGACATAACATGTTAGAGAGAAAA 57.221 29.630 22.03 0.00 45.03 2.29
2760 7039 9.208022 CAAGTGACATAACATGTTAGAGAGAAA 57.792 33.333 22.03 0.20 45.03 2.52
2761 7040 8.585018 TCAAGTGACATAACATGTTAGAGAGAA 58.415 33.333 22.03 0.95 45.03 2.87
2762 7041 8.029522 GTCAAGTGACATAACATGTTAGAGAGA 58.970 37.037 22.03 9.81 45.03 3.10
2763 7042 8.179148 GTCAAGTGACATAACATGTTAGAGAG 57.821 38.462 22.03 14.17 45.03 3.20
2779 7058 7.819900 AGATTTACCAAGTATCAGTCAAGTGAC 59.180 37.037 3.12 3.12 45.08 3.67
2780 7059 7.907389 AGATTTACCAAGTATCAGTCAAGTGA 58.093 34.615 0.00 0.00 0.00 3.41
2781 7060 7.819415 TGAGATTTACCAAGTATCAGTCAAGTG 59.181 37.037 0.00 0.00 0.00 3.16
2782 7061 7.907389 TGAGATTTACCAAGTATCAGTCAAGT 58.093 34.615 0.00 0.00 0.00 3.16
2783 7062 8.037758 ACTGAGATTTACCAAGTATCAGTCAAG 58.962 37.037 6.03 0.00 41.39 3.02
2784 7063 7.907389 ACTGAGATTTACCAAGTATCAGTCAA 58.093 34.615 6.03 0.00 41.39 3.18
2785 7064 7.482169 ACTGAGATTTACCAAGTATCAGTCA 57.518 36.000 6.03 0.00 41.39 3.41
2787 7066 6.377429 TCGACTGAGATTTACCAAGTATCAGT 59.623 38.462 10.30 10.30 46.23 3.41
2788 7067 6.693545 GTCGACTGAGATTTACCAAGTATCAG 59.306 42.308 8.70 4.98 38.85 2.90
2789 7068 6.561614 GTCGACTGAGATTTACCAAGTATCA 58.438 40.000 8.70 0.00 0.00 2.15
2790 7069 5.681982 CGTCGACTGAGATTTACCAAGTATC 59.318 44.000 14.70 0.00 0.00 2.24
2791 7070 5.450137 CCGTCGACTGAGATTTACCAAGTAT 60.450 44.000 14.70 0.00 0.00 2.12
2792 7071 4.142534 CCGTCGACTGAGATTTACCAAGTA 60.143 45.833 14.70 0.00 0.00 2.24
2793 7072 3.367087 CCGTCGACTGAGATTTACCAAGT 60.367 47.826 14.70 0.00 0.00 3.16
2794 7073 3.179830 CCGTCGACTGAGATTTACCAAG 58.820 50.000 14.70 0.00 0.00 3.61
2795 7074 2.559668 ACCGTCGACTGAGATTTACCAA 59.440 45.455 14.31 0.00 0.00 3.67
2796 7075 2.094906 CACCGTCGACTGAGATTTACCA 60.095 50.000 14.31 0.00 0.00 3.25
2797 7076 2.163010 TCACCGTCGACTGAGATTTACC 59.837 50.000 14.31 0.00 0.00 2.85
2798 7077 3.169733 GTCACCGTCGACTGAGATTTAC 58.830 50.000 14.31 0.00 32.92 2.01
2799 7078 2.163010 GGTCACCGTCGACTGAGATTTA 59.837 50.000 14.31 0.00 36.12 1.40
2800 7079 1.067776 GGTCACCGTCGACTGAGATTT 60.068 52.381 14.31 0.00 36.12 2.17
2801 7080 0.526662 GGTCACCGTCGACTGAGATT 59.473 55.000 14.31 0.00 36.12 2.40
2802 7081 0.322636 AGGTCACCGTCGACTGAGAT 60.323 55.000 14.31 0.46 36.12 2.75
2803 7082 0.322648 TAGGTCACCGTCGACTGAGA 59.677 55.000 14.31 8.50 36.12 3.27
2804 7083 0.727970 CTAGGTCACCGTCGACTGAG 59.272 60.000 14.31 6.02 36.12 3.35
2805 7084 1.303799 GCTAGGTCACCGTCGACTGA 61.304 60.000 14.31 8.69 36.12 3.41
2806 7085 1.136984 GCTAGGTCACCGTCGACTG 59.863 63.158 14.70 9.99 36.12 3.51
2807 7086 2.045131 GGCTAGGTCACCGTCGACT 61.045 63.158 14.70 0.00 36.12 4.18
2808 7087 2.338015 TGGCTAGGTCACCGTCGAC 61.338 63.158 5.18 5.18 35.03 4.20
2809 7088 2.034532 TGGCTAGGTCACCGTCGA 59.965 61.111 0.00 0.00 0.00 4.20
2810 7089 1.945354 ATGTGGCTAGGTCACCGTCG 61.945 60.000 0.00 0.00 37.35 5.12
2811 7090 0.179108 GATGTGGCTAGGTCACCGTC 60.179 60.000 0.00 0.00 37.35 4.79
2812 7091 1.614241 GGATGTGGCTAGGTCACCGT 61.614 60.000 0.00 0.00 37.35 4.83
2813 7092 1.144057 GGATGTGGCTAGGTCACCG 59.856 63.158 0.00 0.00 37.35 4.94
2814 7093 0.839946 ATGGATGTGGCTAGGTCACC 59.160 55.000 0.00 0.00 37.35 4.02
2815 7094 3.838244 TTATGGATGTGGCTAGGTCAC 57.162 47.619 0.00 0.00 38.79 3.67
2816 7095 4.853468 TTTTATGGATGTGGCTAGGTCA 57.147 40.909 0.00 0.00 0.00 4.02
2835 7114 9.947433 TCTAAGGATTGCAATTCATCAATTTTT 57.053 25.926 19.95 5.29 33.49 1.94
2836 7115 9.595823 CTCTAAGGATTGCAATTCATCAATTTT 57.404 29.630 19.95 5.99 33.49 1.82
2837 7116 7.709613 GCTCTAAGGATTGCAATTCATCAATTT 59.290 33.333 19.95 6.67 33.49 1.82
2838 7117 7.147794 TGCTCTAAGGATTGCAATTCATCAATT 60.148 33.333 19.95 7.36 33.49 2.32
2839 7118 6.322969 TGCTCTAAGGATTGCAATTCATCAAT 59.677 34.615 19.95 3.32 35.79 2.57
2840 7119 5.653330 TGCTCTAAGGATTGCAATTCATCAA 59.347 36.000 19.95 2.05 32.12 2.57
2841 7120 5.195185 TGCTCTAAGGATTGCAATTCATCA 58.805 37.500 19.95 3.40 32.12 3.07
2842 7121 5.762825 TGCTCTAAGGATTGCAATTCATC 57.237 39.130 19.95 4.84 32.12 2.92
2843 7122 6.069331 AGATGCTCTAAGGATTGCAATTCAT 58.931 36.000 19.95 10.60 38.96 2.57
2844 7123 5.443283 AGATGCTCTAAGGATTGCAATTCA 58.557 37.500 19.95 0.00 38.96 2.57
2845 7124 6.039047 TGAAGATGCTCTAAGGATTGCAATTC 59.961 38.462 14.33 12.11 38.96 2.17
2846 7125 5.889853 TGAAGATGCTCTAAGGATTGCAATT 59.110 36.000 14.33 0.70 38.96 2.32
2847 7126 5.443283 TGAAGATGCTCTAAGGATTGCAAT 58.557 37.500 12.83 12.83 38.96 3.56
2848 7127 4.847198 TGAAGATGCTCTAAGGATTGCAA 58.153 39.130 0.00 0.00 38.96 4.08
2849 7128 4.492494 TGAAGATGCTCTAAGGATTGCA 57.508 40.909 0.00 0.00 39.83 4.08
2850 7129 6.709846 ACTATTGAAGATGCTCTAAGGATTGC 59.290 38.462 0.00 0.00 0.00 3.56
2851 7130 8.557864 CAACTATTGAAGATGCTCTAAGGATTG 58.442 37.037 0.00 0.00 0.00 2.67
2852 7131 8.489489 TCAACTATTGAAGATGCTCTAAGGATT 58.511 33.333 0.00 0.00 36.59 3.01
2853 7132 8.027524 TCAACTATTGAAGATGCTCTAAGGAT 57.972 34.615 0.00 0.00 36.59 3.24
2854 7133 7.423844 TCAACTATTGAAGATGCTCTAAGGA 57.576 36.000 0.00 0.00 36.59 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.