Multiple sequence alignment - TraesCS6D01G229600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G229600 chr6D 100.000 4659 0 0 1 4659 321997591 321992933 0.000000e+00 8604.0
1 TraesCS6D01G229600 chr6D 80.337 178 26 7 477 651 421472025 421472196 4.890000e-25 126.0
2 TraesCS6D01G229600 chr6D 78.531 177 29 6 477 651 411814601 411814770 1.770000e-19 108.0
3 TraesCS6D01G229600 chr6D 95.556 45 2 0 607 651 421472284 421472328 6.470000e-09 73.1
4 TraesCS6D01G229600 chr6B 92.989 3238 146 35 799 3980 501519689 501522901 0.000000e+00 4647.0
5 TraesCS6D01G229600 chr6A 95.541 2893 82 26 1008 3857 459514856 459511968 0.000000e+00 4584.0
6 TraesCS6D01G229600 chr6A 85.563 568 45 21 3855 4420 459511753 459511221 1.130000e-155 560.0
7 TraesCS6D01G229600 chr6A 88.793 116 8 4 812 927 459515237 459515127 2.260000e-28 137.0
8 TraesCS6D01G229600 chr6A 95.918 49 1 1 917 964 459515043 459514995 1.390000e-10 78.7
9 TraesCS6D01G229600 chr3B 84.191 797 61 31 1 779 780877725 780878474 0.000000e+00 713.0
10 TraesCS6D01G229600 chr7A 84.314 765 73 16 1 749 653588151 653587418 0.000000e+00 704.0
11 TraesCS6D01G229600 chr1A 79.188 394 36 11 158 534 492187937 492188301 1.010000e-56 231.0
12 TraesCS6D01G229600 chr1A 90.132 152 12 3 1 150 492154012 492154162 1.320000e-45 195.0
13 TraesCS6D01G229600 chr5D 83.660 153 16 3 288 440 287779167 287779310 8.130000e-28 135.0
14 TraesCS6D01G229600 chr5D 83.673 147 18 4 295 440 502884174 502884315 2.920000e-27 134.0
15 TraesCS6D01G229600 chr5D 100.000 31 0 0 746 776 539723876 539723846 1.810000e-04 58.4
16 TraesCS6D01G229600 chr5A 83.673 147 15 6 295 440 631475450 631475588 3.780000e-26 130.0
17 TraesCS6D01G229600 chr5B 81.529 157 20 7 297 449 326866904 326867055 2.280000e-23 121.0
18 TraesCS6D01G229600 chr4B 79.365 189 26 10 260 445 574055512 574055334 2.280000e-23 121.0
19 TraesCS6D01G229600 chr7B 79.651 172 18 14 295 463 409166395 409166552 1.770000e-19 108.0
20 TraesCS6D01G229600 chrUn 78.505 107 20 3 676 780 56005208 56005103 3.010000e-07 67.6
21 TraesCS6D01G229600 chrUn 78.505 107 20 3 676 780 470284414 470284519 3.010000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G229600 chr6D 321992933 321997591 4658 True 8604.000 8604 100.00000 1 4659 1 chr6D.!!$R1 4658
1 TraesCS6D01G229600 chr6B 501519689 501522901 3212 False 4647.000 4647 92.98900 799 3980 1 chr6B.!!$F1 3181
2 TraesCS6D01G229600 chr6A 459511221 459515237 4016 True 1339.925 4584 91.45375 812 4420 4 chr6A.!!$R1 3608
3 TraesCS6D01G229600 chr3B 780877725 780878474 749 False 713.000 713 84.19100 1 779 1 chr3B.!!$F1 778
4 TraesCS6D01G229600 chr7A 653587418 653588151 733 True 704.000 704 84.31400 1 749 1 chr7A.!!$R1 748

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
694 712 0.107410 TTCCGCAACACCACTCTTGT 60.107 50.000 0.0 0.0 0.00 3.16 F
766 784 0.107703 TCTAATGGTCAGCAAGGCGG 60.108 55.000 0.0 0.0 0.00 6.13 F
1566 1812 1.338107 TCAGGGTCTGTGATTCGTGT 58.662 50.000 0.0 0.0 32.61 4.49 F
2027 2289 2.846206 TGGATGGCTGTGAGGTAGATTT 59.154 45.455 0.0 0.0 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1558 1804 0.247974 GCTCATGCTGCACACGAATC 60.248 55.000 3.57 0.0 36.03 2.52 R
1656 1902 3.723260 TCATGAACACGAACAGCACTTA 58.277 40.909 0.00 0.0 0.00 2.24 R
3010 3343 1.032014 GAGCCTCACTGCACCAAAAA 58.968 50.000 0.00 0.0 0.00 1.94 R
3866 4242 0.745845 CAAGAATGTCCCCTCCGCTG 60.746 60.000 0.00 0.0 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 53 3.115390 CCTCCACTCATTTTCTCCCCTA 58.885 50.000 0.00 0.00 0.00 3.53
62 64 4.380843 TTTCTCCCCTATTCTTGCAACA 57.619 40.909 0.00 0.00 0.00 3.33
100 102 4.440525 CCATCTATGCAAACCACCATGTTC 60.441 45.833 0.00 0.00 0.00 3.18
108 110 3.902881 AACCACCATGTTCTTTGCAAA 57.097 38.095 12.14 12.14 0.00 3.68
115 117 2.016165 GTTCTTTGCAAAGCGCCGG 61.016 57.895 30.35 10.58 41.33 6.13
155 158 2.100797 CGGTCGTGATAACGGCGA 59.899 61.111 16.62 0.00 38.80 5.54
181 184 0.603569 ACGGAATCACTCGAAGCTGT 59.396 50.000 0.00 0.00 0.00 4.40
185 188 2.353208 GGAATCACTCGAAGCTGTGAGT 60.353 50.000 13.78 13.78 45.98 3.41
209 212 1.154450 CACGACGACGACCAGAGAC 60.154 63.158 15.32 0.00 42.66 3.36
235 238 1.816537 GGGCAGCAGTCACGATCTA 59.183 57.895 0.00 0.00 0.00 1.98
256 259 4.602259 CGGCACCACCACACGAGT 62.602 66.667 0.00 0.00 39.03 4.18
257 260 2.665185 GGCACCACCACACGAGTC 60.665 66.667 0.00 0.00 38.86 3.36
272 275 2.509336 GTCACTGCCATCCGACGG 60.509 66.667 7.84 7.84 0.00 4.79
326 329 1.159664 ACCACCTCAAGCTCCTCCT 59.840 57.895 0.00 0.00 0.00 3.69
392 395 7.358683 GCAAAAATAGAGTTCTGCAACATGAAC 60.359 37.037 0.00 8.16 41.84 3.18
459 462 7.409767 GCAAAAGATTCTGCAAACGATCTTTAC 60.410 37.037 18.57 13.43 37.37 2.01
462 480 7.383102 AGATTCTGCAAACGATCTTTACATT 57.617 32.000 0.00 0.00 0.00 2.71
468 486 9.906660 TCTGCAAACGATCTTTACATTATTTTT 57.093 25.926 0.00 0.00 0.00 1.94
551 569 5.938322 TGTGATCTTTAGAATTTCCGCAAC 58.062 37.500 0.00 0.00 0.00 4.17
558 576 6.429692 TCTTTAGAATTTCCGCAACAAGATCA 59.570 34.615 0.00 0.00 0.00 2.92
629 647 4.536364 AAAATACACGCTCGGATGATTG 57.464 40.909 0.00 0.00 0.00 2.67
630 648 1.502231 ATACACGCTCGGATGATTGC 58.498 50.000 0.00 0.00 0.00 3.56
631 649 0.174617 TACACGCTCGGATGATTGCA 59.825 50.000 0.00 0.00 0.00 4.08
632 650 0.673333 ACACGCTCGGATGATTGCAA 60.673 50.000 0.00 0.00 0.00 4.08
633 651 0.247814 CACGCTCGGATGATTGCAAC 60.248 55.000 0.00 0.00 0.00 4.17
634 652 0.673333 ACGCTCGGATGATTGCAACA 60.673 50.000 0.00 2.38 0.00 3.33
635 653 0.447406 CGCTCGGATGATTGCAACAA 59.553 50.000 0.00 0.00 0.00 2.83
636 654 1.530441 CGCTCGGATGATTGCAACAAG 60.530 52.381 0.00 0.00 0.00 3.16
637 655 1.796617 GCTCGGATGATTGCAACAAGC 60.797 52.381 0.00 4.67 45.96 4.01
649 667 2.115348 CAACAAGCAGACTGTTGCAG 57.885 50.000 3.99 9.96 46.47 4.41
650 668 1.672363 CAACAAGCAGACTGTTGCAGA 59.328 47.619 3.99 0.00 46.47 4.26
651 669 1.590932 ACAAGCAGACTGTTGCAGAG 58.409 50.000 3.99 0.00 46.47 3.35
652 670 0.873054 CAAGCAGACTGTTGCAGAGG 59.127 55.000 3.99 0.00 46.47 3.69
653 671 0.250640 AAGCAGACTGTTGCAGAGGG 60.251 55.000 3.99 0.00 46.47 4.30
654 672 1.072159 GCAGACTGTTGCAGAGGGT 59.928 57.895 3.99 0.00 43.53 4.34
655 673 0.536006 GCAGACTGTTGCAGAGGGTT 60.536 55.000 3.99 0.00 43.53 4.11
656 674 1.270839 GCAGACTGTTGCAGAGGGTTA 60.271 52.381 3.99 0.00 43.53 2.85
657 675 2.810400 GCAGACTGTTGCAGAGGGTTAA 60.810 50.000 3.99 0.00 43.53 2.01
658 676 3.679389 CAGACTGTTGCAGAGGGTTAAT 58.321 45.455 2.91 0.00 35.18 1.40
659 677 3.438087 CAGACTGTTGCAGAGGGTTAATG 59.562 47.826 2.91 0.00 35.18 1.90
660 678 2.749621 GACTGTTGCAGAGGGTTAATGG 59.250 50.000 2.91 0.00 35.18 3.16
661 679 2.108250 ACTGTTGCAGAGGGTTAATGGT 59.892 45.455 2.91 0.00 35.18 3.55
662 680 2.749621 CTGTTGCAGAGGGTTAATGGTC 59.250 50.000 0.00 0.00 32.44 4.02
663 681 2.107378 TGTTGCAGAGGGTTAATGGTCA 59.893 45.455 0.00 0.00 0.00 4.02
664 682 3.153919 GTTGCAGAGGGTTAATGGTCAA 58.846 45.455 0.00 0.00 0.00 3.18
665 683 2.790433 TGCAGAGGGTTAATGGTCAAC 58.210 47.619 0.00 0.00 0.00 3.18
666 684 2.107378 TGCAGAGGGTTAATGGTCAACA 59.893 45.455 0.00 0.00 0.00 3.33
667 685 3.153919 GCAGAGGGTTAATGGTCAACAA 58.846 45.455 0.00 0.00 0.00 2.83
668 686 3.191371 GCAGAGGGTTAATGGTCAACAAG 59.809 47.826 0.00 0.00 0.00 3.16
669 687 4.651778 CAGAGGGTTAATGGTCAACAAGA 58.348 43.478 0.00 0.00 0.00 3.02
670 688 4.697352 CAGAGGGTTAATGGTCAACAAGAG 59.303 45.833 0.00 0.00 0.00 2.85
671 689 4.010349 GAGGGTTAATGGTCAACAAGAGG 58.990 47.826 0.00 0.00 0.00 3.69
672 690 2.492088 GGGTTAATGGTCAACAAGAGGC 59.508 50.000 0.00 0.00 0.00 4.70
673 691 3.421844 GGTTAATGGTCAACAAGAGGCT 58.578 45.455 0.00 0.00 0.00 4.58
674 692 3.826729 GGTTAATGGTCAACAAGAGGCTT 59.173 43.478 0.00 0.00 0.00 4.35
675 693 4.280929 GGTTAATGGTCAACAAGAGGCTTT 59.719 41.667 0.00 0.00 0.00 3.51
676 694 5.221441 GGTTAATGGTCAACAAGAGGCTTTT 60.221 40.000 0.00 0.00 0.00 2.27
677 695 4.590850 AATGGTCAACAAGAGGCTTTTC 57.409 40.909 0.00 0.00 0.00 2.29
678 696 2.306847 TGGTCAACAAGAGGCTTTTCC 58.693 47.619 0.00 0.00 0.00 3.13
679 697 1.266989 GGTCAACAAGAGGCTTTTCCG 59.733 52.381 0.00 0.00 40.77 4.30
680 698 0.951558 TCAACAAGAGGCTTTTCCGC 59.048 50.000 0.00 0.00 40.77 5.54
681 699 0.667993 CAACAAGAGGCTTTTCCGCA 59.332 50.000 0.00 0.00 40.77 5.69
682 700 1.066908 CAACAAGAGGCTTTTCCGCAA 59.933 47.619 0.00 0.00 40.77 4.85
683 701 0.668535 ACAAGAGGCTTTTCCGCAAC 59.331 50.000 0.00 0.00 40.77 4.17
684 702 0.667993 CAAGAGGCTTTTCCGCAACA 59.332 50.000 0.00 0.00 40.77 3.33
685 703 0.668535 AAGAGGCTTTTCCGCAACAC 59.331 50.000 0.00 0.00 40.77 3.32
686 704 1.172812 AGAGGCTTTTCCGCAACACC 61.173 55.000 0.00 0.00 40.77 4.16
687 705 1.452145 GAGGCTTTTCCGCAACACCA 61.452 55.000 0.00 0.00 40.77 4.17
688 706 1.299850 GGCTTTTCCGCAACACCAC 60.300 57.895 0.00 0.00 0.00 4.16
689 707 1.733526 GCTTTTCCGCAACACCACT 59.266 52.632 0.00 0.00 0.00 4.00
690 708 0.317854 GCTTTTCCGCAACACCACTC 60.318 55.000 0.00 0.00 0.00 3.51
691 709 1.308998 CTTTTCCGCAACACCACTCT 58.691 50.000 0.00 0.00 0.00 3.24
692 710 1.676006 CTTTTCCGCAACACCACTCTT 59.324 47.619 0.00 0.00 0.00 2.85
693 711 1.021202 TTTCCGCAACACCACTCTTG 58.979 50.000 0.00 0.00 0.00 3.02
694 712 0.107410 TTCCGCAACACCACTCTTGT 60.107 50.000 0.00 0.00 0.00 3.16
695 713 0.107410 TCCGCAACACCACTCTTGTT 60.107 50.000 0.00 0.00 37.69 2.83
699 717 2.937469 CAACACCACTCTTGTTGCAA 57.063 45.000 0.00 0.00 45.36 4.08
700 718 3.229276 CAACACCACTCTTGTTGCAAA 57.771 42.857 0.00 0.00 45.36 3.68
701 719 3.181397 CAACACCACTCTTGTTGCAAAG 58.819 45.455 0.00 0.00 45.36 2.77
702 720 1.750778 ACACCACTCTTGTTGCAAAGG 59.249 47.619 0.00 0.00 0.00 3.11
703 721 2.023673 CACCACTCTTGTTGCAAAGGA 58.976 47.619 0.00 0.00 0.00 3.36
704 722 2.024414 ACCACTCTTGTTGCAAAGGAC 58.976 47.619 0.00 0.00 0.00 3.85
705 723 2.301346 CCACTCTTGTTGCAAAGGACT 58.699 47.619 0.00 0.00 0.00 3.85
706 724 3.118038 ACCACTCTTGTTGCAAAGGACTA 60.118 43.478 0.00 0.00 0.00 2.59
707 725 3.499918 CCACTCTTGTTGCAAAGGACTAG 59.500 47.826 0.00 0.00 0.00 2.57
708 726 4.380531 CACTCTTGTTGCAAAGGACTAGA 58.619 43.478 0.00 0.11 0.00 2.43
709 727 4.999950 CACTCTTGTTGCAAAGGACTAGAT 59.000 41.667 0.00 0.00 29.73 1.98
710 728 4.999950 ACTCTTGTTGCAAAGGACTAGATG 59.000 41.667 0.00 0.00 29.73 2.90
711 729 3.753272 TCTTGTTGCAAAGGACTAGATGC 59.247 43.478 0.00 0.00 39.22 3.91
712 730 3.423539 TGTTGCAAAGGACTAGATGCT 57.576 42.857 0.00 0.00 39.49 3.79
713 731 3.754965 TGTTGCAAAGGACTAGATGCTT 58.245 40.909 0.00 0.00 41.51 3.91
714 732 4.905429 TGTTGCAAAGGACTAGATGCTTA 58.095 39.130 0.00 0.00 38.17 3.09
715 733 4.695455 TGTTGCAAAGGACTAGATGCTTAC 59.305 41.667 0.00 3.32 38.17 2.34
716 734 3.521560 TGCAAAGGACTAGATGCTTACG 58.478 45.455 0.00 0.00 38.17 3.18
717 735 3.056107 TGCAAAGGACTAGATGCTTACGT 60.056 43.478 0.00 0.00 38.17 3.57
718 736 3.307242 GCAAAGGACTAGATGCTTACGTG 59.693 47.826 0.00 0.00 38.17 4.49
719 737 3.802948 AAGGACTAGATGCTTACGTGG 57.197 47.619 0.00 0.00 37.18 4.94
720 738 2.032620 AGGACTAGATGCTTACGTGGG 58.967 52.381 0.00 0.00 0.00 4.61
721 739 1.755380 GGACTAGATGCTTACGTGGGT 59.245 52.381 0.00 0.00 0.00 4.51
722 740 2.954318 GGACTAGATGCTTACGTGGGTA 59.046 50.000 0.00 0.00 0.00 3.69
723 741 3.004524 GGACTAGATGCTTACGTGGGTAG 59.995 52.174 0.00 0.00 0.00 3.18
724 742 3.881688 GACTAGATGCTTACGTGGGTAGA 59.118 47.826 0.00 0.00 0.00 2.59
725 743 4.471548 ACTAGATGCTTACGTGGGTAGAT 58.528 43.478 0.00 0.00 0.00 1.98
726 744 4.519730 ACTAGATGCTTACGTGGGTAGATC 59.480 45.833 0.00 0.00 0.00 2.75
727 745 2.293677 AGATGCTTACGTGGGTAGATCG 59.706 50.000 0.00 0.00 0.00 3.69
728 746 0.742505 TGCTTACGTGGGTAGATCGG 59.257 55.000 0.00 0.00 0.00 4.18
729 747 1.027357 GCTTACGTGGGTAGATCGGA 58.973 55.000 0.00 0.00 0.00 4.55
730 748 1.268948 GCTTACGTGGGTAGATCGGAC 60.269 57.143 0.00 0.00 0.00 4.79
731 749 1.003116 CTTACGTGGGTAGATCGGACG 60.003 57.143 0.00 0.00 36.14 4.79
732 750 0.815213 TACGTGGGTAGATCGGACGG 60.815 60.000 0.00 0.00 34.36 4.79
733 751 2.416260 GTGGGTAGATCGGACGGC 59.584 66.667 0.00 0.00 0.00 5.68
734 752 2.836360 TGGGTAGATCGGACGGCC 60.836 66.667 0.00 0.00 0.00 6.13
745 763 3.164028 GGACGGCCGTTACGTATAC 57.836 57.895 34.65 16.78 45.68 1.47
746 764 0.380378 GGACGGCCGTTACGTATACA 59.620 55.000 34.65 0.00 45.68 2.29
747 765 1.001378 GGACGGCCGTTACGTATACAT 60.001 52.381 34.65 3.67 45.68 2.29
748 766 2.310577 GACGGCCGTTACGTATACATC 58.689 52.381 34.65 11.13 45.68 3.06
749 767 1.949525 ACGGCCGTTACGTATACATCT 59.050 47.619 28.70 0.00 43.60 2.90
750 768 3.138304 ACGGCCGTTACGTATACATCTA 58.862 45.455 28.70 0.00 43.60 1.98
751 769 3.563808 ACGGCCGTTACGTATACATCTAA 59.436 43.478 28.70 0.00 43.60 2.10
752 770 4.216257 ACGGCCGTTACGTATACATCTAAT 59.784 41.667 28.70 0.00 43.60 1.73
753 771 4.556135 CGGCCGTTACGTATACATCTAATG 59.444 45.833 19.50 1.41 0.00 1.90
754 772 4.860907 GGCCGTTACGTATACATCTAATGG 59.139 45.833 3.52 13.93 33.60 3.16
755 773 5.464168 GCCGTTACGTATACATCTAATGGT 58.536 41.667 16.97 4.10 30.70 3.55
756 774 5.570589 GCCGTTACGTATACATCTAATGGTC 59.429 44.000 16.97 10.36 30.70 4.02
757 775 6.671190 CCGTTACGTATACATCTAATGGTCA 58.329 40.000 3.52 0.00 33.60 4.02
758 776 6.800408 CCGTTACGTATACATCTAATGGTCAG 59.200 42.308 3.52 0.00 33.60 3.51
759 777 6.304922 CGTTACGTATACATCTAATGGTCAGC 59.695 42.308 3.32 0.00 33.60 4.26
760 778 5.784578 ACGTATACATCTAATGGTCAGCA 57.215 39.130 3.32 0.00 33.60 4.41
761 779 6.156748 ACGTATACATCTAATGGTCAGCAA 57.843 37.500 3.32 0.00 33.60 3.91
762 780 6.216569 ACGTATACATCTAATGGTCAGCAAG 58.783 40.000 3.32 0.00 33.60 4.01
763 781 5.635280 CGTATACATCTAATGGTCAGCAAGG 59.365 44.000 3.32 0.00 33.60 3.61
764 782 2.648059 ACATCTAATGGTCAGCAAGGC 58.352 47.619 0.00 0.00 33.60 4.35
765 783 1.600957 CATCTAATGGTCAGCAAGGCG 59.399 52.381 0.00 0.00 0.00 5.52
766 784 0.107703 TCTAATGGTCAGCAAGGCGG 60.108 55.000 0.00 0.00 0.00 6.13
767 785 1.718757 CTAATGGTCAGCAAGGCGGC 61.719 60.000 0.00 0.00 0.00 6.53
772 790 4.838152 TCAGCAAGGCGGCGGATC 62.838 66.667 9.78 0.00 39.27 3.36
773 791 4.845580 CAGCAAGGCGGCGGATCT 62.846 66.667 9.78 0.00 39.27 2.75
774 792 4.101448 AGCAAGGCGGCGGATCTT 62.101 61.111 9.78 0.00 39.27 2.40
775 793 3.134127 GCAAGGCGGCGGATCTTT 61.134 61.111 9.78 0.00 0.00 2.52
776 794 2.700773 GCAAGGCGGCGGATCTTTT 61.701 57.895 9.78 0.00 0.00 2.27
777 795 1.883021 CAAGGCGGCGGATCTTTTT 59.117 52.632 9.78 0.00 0.00 1.94
882 901 4.312443 CTGAAAGACGGCCTGTAGTTAAA 58.688 43.478 0.00 0.00 34.07 1.52
897 916 4.514781 AGTTAAAAATTCGGGACAAGCC 57.485 40.909 0.00 0.00 0.00 4.35
1284 1530 2.509336 CTCGCCGCCGATTCAGTT 60.509 61.111 0.00 0.00 43.47 3.16
1354 1600 1.671054 CCCATGTGGCGTTTCGTCT 60.671 57.895 0.00 0.00 30.55 4.18
1509 1755 4.725490 TGGCCTAAAGGATTGCTAATACC 58.275 43.478 3.32 0.00 37.39 2.73
1558 1804 9.593134 GCTATTAATCTTATATCAGGGTCTGTG 57.407 37.037 0.00 0.00 32.61 3.66
1565 1811 2.680312 ATCAGGGTCTGTGATTCGTG 57.320 50.000 0.00 0.00 30.03 4.35
1566 1812 1.338107 TCAGGGTCTGTGATTCGTGT 58.662 50.000 0.00 0.00 32.61 4.49
1599 1845 3.695830 AAAGGCTGTTACGATCCTCAA 57.304 42.857 0.00 0.00 0.00 3.02
1610 1856 6.652900 TGTTACGATCCTCAATGATTTGTTCA 59.347 34.615 0.00 0.00 39.12 3.18
1616 1862 7.272084 CGATCCTCAATGATTTGTTCAGAAAAC 59.728 37.037 0.00 0.00 37.89 2.43
1621 1867 9.090692 CTCAATGATTTGTTCAGAAAACAGTTT 57.909 29.630 0.00 0.00 37.89 2.66
1630 1876 8.964420 TGTTCAGAAAACAGTTTTACTTTCAG 57.036 30.769 11.38 0.00 31.94 3.02
1632 1878 9.406828 GTTCAGAAAACAGTTTTACTTTCAGTT 57.593 29.630 11.38 0.00 31.94 3.16
1633 1879 9.620660 TTCAGAAAACAGTTTTACTTTCAGTTC 57.379 29.630 11.38 0.00 31.94 3.01
1656 1902 4.518278 TGGTTGTACCATGATATTGGCT 57.482 40.909 0.00 0.00 44.79 4.75
1662 1909 5.063204 TGTACCATGATATTGGCTAAGTGC 58.937 41.667 0.00 0.00 40.68 4.40
1681 1928 4.101942 GTGCTGTTCGTGTTCATGAAAAA 58.898 39.130 10.35 0.00 0.00 1.94
1878 2127 6.380079 AAAAGATGTCTCTAGTTGGTGGAT 57.620 37.500 0.00 0.00 0.00 3.41
2027 2289 2.846206 TGGATGGCTGTGAGGTAGATTT 59.154 45.455 0.00 0.00 0.00 2.17
2204 2467 7.665559 TGATTACTGTCCTTGCTACTTGAAATT 59.334 33.333 0.00 0.00 0.00 1.82
2321 2585 8.782144 GTTTATGCCCAAATTTGAGAATTGAAA 58.218 29.630 19.86 2.47 35.69 2.69
2370 2634 5.103043 TGTGAATAGTATCTCCCCCTTCTCT 60.103 44.000 0.00 0.00 0.00 3.10
2588 2852 6.431234 ACTGCAGTAACCCAAAGAATTCTAAG 59.569 38.462 20.16 4.27 0.00 2.18
2960 3232 5.334724 GCTTCAGTTTCAAGATCTTCAGGTG 60.335 44.000 4.57 0.00 0.00 4.00
3285 3625 4.283722 GTCTCCTTGAAGTTTCCTAGTCCA 59.716 45.833 0.00 0.00 0.00 4.02
3363 3704 5.353394 ACTTTCAACTGTGACTAGAACCA 57.647 39.130 0.00 0.00 31.90 3.67
3404 3775 8.492673 TGCTCAAATAGACGTTCTAAATGAAT 57.507 30.769 0.00 0.00 36.99 2.57
3413 3784 8.322906 AGACGTTCTAAATGAATGACATCAAA 57.677 30.769 0.00 0.00 42.68 2.69
3538 3914 7.015974 TGTCATCAGGTTATCATAGATGAAGCT 59.984 37.037 0.00 0.00 44.48 3.74
3614 3990 3.432051 CTCGGGATGCGGACCTCAC 62.432 68.421 0.00 0.00 0.00 3.51
3622 3998 1.371558 GCGGACCTCACAGTTCCTT 59.628 57.895 0.00 0.00 0.00 3.36
3866 4242 4.032786 GCCGATTGTTGGTAAAATTGATGC 59.967 41.667 0.00 0.00 0.00 3.91
3870 4463 3.573598 TGTTGGTAAAATTGATGCAGCG 58.426 40.909 0.00 0.00 0.00 5.18
4027 4620 6.136541 TCAAAAGAAGAAAAGAAGTCTGGC 57.863 37.500 0.00 0.00 0.00 4.85
4028 4621 5.652014 TCAAAAGAAGAAAAGAAGTCTGGCA 59.348 36.000 0.00 0.00 0.00 4.92
4062 4655 7.061789 CCAAAGTTTGTTTCTGTCTTGTTGTAC 59.938 37.037 14.36 0.00 0.00 2.90
4065 4658 8.197988 AGTTTGTTTCTGTCTTGTTGTACTAG 57.802 34.615 0.00 0.00 0.00 2.57
4067 4660 9.090692 GTTTGTTTCTGTCTTGTTGTACTAGTA 57.909 33.333 0.00 0.00 0.00 1.82
4073 4666 7.646314 TCTGTCTTGTTGTACTAGTACTCAAC 58.354 38.462 28.56 24.49 40.03 3.18
4075 4668 7.948357 TGTCTTGTTGTACTAGTACTCAACAT 58.052 34.615 26.87 0.52 45.65 2.71
4082 4675 9.472361 GTTGTACTAGTACTCAACATCTTTTCA 57.528 33.333 28.56 5.47 39.59 2.69
4118 4713 5.740838 GCTGTTTTCAAGTATAAAACCGC 57.259 39.130 10.54 10.54 44.17 5.68
4125 4720 8.552865 GTTTTCAAGTATAAAACCGCCATTTTT 58.447 29.630 0.00 0.00 39.71 1.94
4127 4722 8.973835 TTCAAGTATAAAACCGCCATTTTTAG 57.026 30.769 0.00 0.00 33.14 1.85
4137 4732 8.702163 AAACCGCCATTTTTAGATAATTTGAG 57.298 30.769 0.00 0.00 0.00 3.02
4138 4733 6.805713 ACCGCCATTTTTAGATAATTTGAGG 58.194 36.000 0.00 0.00 0.00 3.86
4139 4734 6.379988 ACCGCCATTTTTAGATAATTTGAGGT 59.620 34.615 0.00 0.00 0.00 3.85
4141 4736 8.410141 CCGCCATTTTTAGATAATTTGAGGTTA 58.590 33.333 0.00 0.00 0.00 2.85
4142 4737 9.450807 CGCCATTTTTAGATAATTTGAGGTTAG 57.549 33.333 0.00 0.00 0.00 2.34
4151 4746 3.863142 ATTTGAGGTTAGAGCGTACGT 57.137 42.857 17.90 3.43 0.00 3.57
4155 4750 2.294233 TGAGGTTAGAGCGTACGTTTGT 59.706 45.455 17.90 6.95 0.00 2.83
4157 4752 1.723003 GGTTAGAGCGTACGTTTGTGG 59.277 52.381 17.90 0.00 0.00 4.17
4159 4754 2.796593 GTTAGAGCGTACGTTTGTGGTT 59.203 45.455 17.90 0.00 0.00 3.67
4161 4756 1.862827 AGAGCGTACGTTTGTGGTTTC 59.137 47.619 17.90 0.00 0.00 2.78
4163 4758 0.576328 GCGTACGTTTGTGGTTTCGA 59.424 50.000 17.90 0.00 0.00 3.71
4164 4759 1.005137 GCGTACGTTTGTGGTTTCGAA 60.005 47.619 17.90 0.00 0.00 3.71
4165 4760 2.536529 GCGTACGTTTGTGGTTTCGAAA 60.537 45.455 17.90 6.47 0.00 3.46
4166 4761 3.021609 CGTACGTTTGTGGTTTCGAAAC 58.978 45.455 28.83 28.83 38.17 2.78
4168 4763 1.458746 CGTTTGTGGTTTCGAAACGG 58.541 50.000 29.23 11.98 45.09 4.44
4169 4764 1.830086 GTTTGTGGTTTCGAAACGGG 58.170 50.000 29.23 0.00 39.77 5.28
4170 4765 1.132834 GTTTGTGGTTTCGAAACGGGT 59.867 47.619 29.23 0.00 39.77 5.28
4171 4766 0.733729 TTGTGGTTTCGAAACGGGTG 59.266 50.000 29.23 0.00 39.77 4.61
4172 4767 1.096386 TGTGGTTTCGAAACGGGTGG 61.096 55.000 29.23 0.00 39.77 4.61
4173 4768 2.188161 TGGTTTCGAAACGGGTGGC 61.188 57.895 29.23 17.42 39.77 5.01
4174 4769 1.895231 GGTTTCGAAACGGGTGGCT 60.895 57.895 29.23 0.00 39.77 4.75
4175 4770 1.449726 GGTTTCGAAACGGGTGGCTT 61.450 55.000 29.23 0.00 39.77 4.35
4176 4771 0.382873 GTTTCGAAACGGGTGGCTTT 59.617 50.000 24.02 0.00 0.00 3.51
4177 4772 0.382515 TTTCGAAACGGGTGGCTTTG 59.617 50.000 6.47 0.00 0.00 2.77
4178 4773 0.464013 TTCGAAACGGGTGGCTTTGA 60.464 50.000 0.00 0.00 0.00 2.69
4179 4774 0.250553 TCGAAACGGGTGGCTTTGAT 60.251 50.000 0.00 0.00 0.00 2.57
4180 4775 0.596082 CGAAACGGGTGGCTTTGATT 59.404 50.000 0.00 0.00 0.00 2.57
4181 4776 1.401018 CGAAACGGGTGGCTTTGATTC 60.401 52.381 0.00 0.00 0.00 2.52
4182 4777 1.611491 GAAACGGGTGGCTTTGATTCA 59.389 47.619 0.00 0.00 0.00 2.57
4183 4778 1.923356 AACGGGTGGCTTTGATTCAT 58.077 45.000 0.00 0.00 0.00 2.57
4184 4779 1.176527 ACGGGTGGCTTTGATTCATG 58.823 50.000 0.00 0.00 0.00 3.07
4185 4780 1.271871 ACGGGTGGCTTTGATTCATGA 60.272 47.619 0.00 0.00 0.00 3.07
4186 4781 1.402968 CGGGTGGCTTTGATTCATGAG 59.597 52.381 0.00 0.00 0.00 2.90
4187 4782 2.450476 GGGTGGCTTTGATTCATGAGT 58.550 47.619 0.00 0.00 0.00 3.41
4188 4783 2.827921 GGGTGGCTTTGATTCATGAGTT 59.172 45.455 0.00 0.00 0.00 3.01
4189 4784 4.016444 GGGTGGCTTTGATTCATGAGTTA 58.984 43.478 0.00 0.00 0.00 2.24
4192 4787 3.696051 TGGCTTTGATTCATGAGTTAGGC 59.304 43.478 12.27 12.27 0.00 3.93
4199 4794 9.770097 CTTTGATTCATGAGTTAGGCTAGAATA 57.230 33.333 0.00 0.00 0.00 1.75
4205 4800 8.023021 TCATGAGTTAGGCTAGAATAATGTGT 57.977 34.615 0.00 0.00 0.00 3.72
4225 4820 5.414454 TGTGTTAACAGGCTGCTAAATAAGG 59.586 40.000 15.89 0.00 0.00 2.69
4226 4821 5.414765 GTGTTAACAGGCTGCTAAATAAGGT 59.585 40.000 15.89 0.00 0.00 3.50
4235 4830 5.190677 GCTGCTAAATAAGGTACAAAGGGA 58.809 41.667 0.00 0.00 0.00 4.20
4236 4831 5.828328 GCTGCTAAATAAGGTACAAAGGGAT 59.172 40.000 0.00 0.00 0.00 3.85
4237 4832 6.017026 GCTGCTAAATAAGGTACAAAGGGATC 60.017 42.308 0.00 0.00 0.00 3.36
4240 4835 7.891183 TGCTAAATAAGGTACAAAGGGATCAAA 59.109 33.333 0.00 0.00 0.00 2.69
4241 4836 8.745590 GCTAAATAAGGTACAAAGGGATCAAAA 58.254 33.333 0.00 0.00 0.00 2.44
4243 4838 7.476540 AATAAGGTACAAAGGGATCAAAACC 57.523 36.000 0.00 0.00 0.00 3.27
4244 4839 4.741928 AGGTACAAAGGGATCAAAACCT 57.258 40.909 0.00 0.00 39.21 3.50
4245 4840 5.853572 AGGTACAAAGGGATCAAAACCTA 57.146 39.130 0.00 0.00 35.64 3.08
4246 4841 6.402981 AGGTACAAAGGGATCAAAACCTAT 57.597 37.500 0.00 0.00 35.64 2.57
4267 4862 3.025978 TGGTTTGATCATTGATGGGCTC 58.974 45.455 3.32 0.00 0.00 4.70
4281 4876 3.057969 TGGGCTCAAGTACAATCACTG 57.942 47.619 0.00 0.00 0.00 3.66
4291 4886 4.315803 AGTACAATCACTGCACTAACCAC 58.684 43.478 0.00 0.00 29.16 4.16
4292 4887 3.492102 ACAATCACTGCACTAACCACT 57.508 42.857 0.00 0.00 0.00 4.00
4305 4900 2.951229 AACCACTTAGACCCAGGTTG 57.049 50.000 0.00 0.00 40.80 3.77
4308 4903 1.271379 CCACTTAGACCCAGGTTGGTG 60.271 57.143 0.00 0.00 39.24 4.17
4316 4911 0.984230 CCCAGGTTGGTGCTCTAAGA 59.016 55.000 0.00 0.00 35.17 2.10
4332 4927 6.093219 TGCTCTAAGAAGCAGAAATGACAATC 59.907 38.462 0.00 0.00 47.00 2.67
4333 4928 6.093219 GCTCTAAGAAGCAGAAATGACAATCA 59.907 38.462 0.00 0.00 42.05 2.57
4334 4929 7.201714 GCTCTAAGAAGCAGAAATGACAATCAT 60.202 37.037 0.00 0.00 42.05 2.45
4365 4960 8.210265 TGGTGCATATCTGTATTGTTCTTATCA 58.790 33.333 0.00 0.00 0.00 2.15
4384 4979 4.732285 TCATTTTGCTCGTCTCAAGTTC 57.268 40.909 0.00 0.00 0.00 3.01
4389 4984 1.270305 TGCTCGTCTCAAGTTCCCAAG 60.270 52.381 0.00 0.00 0.00 3.61
4397 4992 0.468029 CAAGTTCCCAAGCCACCACT 60.468 55.000 0.00 0.00 0.00 4.00
4406 5001 1.470098 CAAGCCACCACTATGCAACTC 59.530 52.381 0.00 0.00 0.00 3.01
4420 5015 2.304470 TGCAACTCATAACTACTGGCCA 59.696 45.455 4.71 4.71 0.00 5.36
4421 5016 3.244735 TGCAACTCATAACTACTGGCCAA 60.245 43.478 7.01 0.00 0.00 4.52
4422 5017 3.127030 GCAACTCATAACTACTGGCCAAC 59.873 47.826 7.01 0.00 0.00 3.77
4423 5018 4.579869 CAACTCATAACTACTGGCCAACT 58.420 43.478 7.01 0.00 0.00 3.16
4424 5019 4.473477 ACTCATAACTACTGGCCAACTC 57.527 45.455 7.01 0.00 0.00 3.01
4425 5020 4.097418 ACTCATAACTACTGGCCAACTCT 58.903 43.478 7.01 0.00 0.00 3.24
4426 5021 5.269991 ACTCATAACTACTGGCCAACTCTA 58.730 41.667 7.01 0.00 0.00 2.43
4427 5022 5.361285 ACTCATAACTACTGGCCAACTCTAG 59.639 44.000 7.01 5.91 0.00 2.43
4428 5023 4.099573 TCATAACTACTGGCCAACTCTAGC 59.900 45.833 7.01 0.00 0.00 3.42
4429 5024 0.818296 ACTACTGGCCAACTCTAGCG 59.182 55.000 7.01 0.00 0.00 4.26
4430 5025 1.103803 CTACTGGCCAACTCTAGCGA 58.896 55.000 7.01 0.00 0.00 4.93
4431 5026 1.066303 CTACTGGCCAACTCTAGCGAG 59.934 57.143 7.01 0.00 43.10 5.03
4432 5027 1.520342 CTGGCCAACTCTAGCGAGC 60.520 63.158 7.01 0.00 41.09 5.03
4433 5028 2.202946 GGCCAACTCTAGCGAGCC 60.203 66.667 0.00 0.00 41.09 4.70
4434 5029 2.579201 GCCAACTCTAGCGAGCCA 59.421 61.111 0.00 0.00 41.09 4.75
4435 5030 1.144936 GCCAACTCTAGCGAGCCAT 59.855 57.895 0.00 0.00 41.09 4.40
4436 5031 1.156645 GCCAACTCTAGCGAGCCATG 61.157 60.000 0.00 0.00 41.09 3.66
4437 5032 0.531532 CCAACTCTAGCGAGCCATGG 60.532 60.000 7.63 7.63 41.09 3.66
4438 5033 0.531532 CAACTCTAGCGAGCCATGGG 60.532 60.000 15.13 0.00 41.09 4.00
4439 5034 0.978146 AACTCTAGCGAGCCATGGGT 60.978 55.000 18.33 18.33 41.09 4.51
4440 5035 0.978146 ACTCTAGCGAGCCATGGGTT 60.978 55.000 19.39 4.71 41.09 4.11
4441 5036 0.531532 CTCTAGCGAGCCATGGGTTG 60.532 60.000 24.53 24.53 0.00 3.77
4442 5037 1.221840 CTAGCGAGCCATGGGTTGT 59.778 57.895 27.96 18.38 0.00 3.32
4443 5038 1.078497 TAGCGAGCCATGGGTTGTG 60.078 57.895 27.96 17.52 0.00 3.33
4444 5039 1.836999 TAGCGAGCCATGGGTTGTGT 61.837 55.000 27.96 19.33 0.00 3.72
4445 5040 2.981560 GCGAGCCATGGGTTGTGTG 61.982 63.158 27.96 13.14 0.00 3.82
4446 5041 1.302431 CGAGCCATGGGTTGTGTGA 60.302 57.895 19.39 0.00 0.00 3.58
4447 5042 1.577328 CGAGCCATGGGTTGTGTGAC 61.577 60.000 19.39 1.93 0.00 3.67
4448 5043 0.537143 GAGCCATGGGTTGTGTGACA 60.537 55.000 19.39 0.00 0.00 3.58
4449 5044 0.538057 AGCCATGGGTTGTGTGACAG 60.538 55.000 11.62 0.00 0.00 3.51
4450 5045 1.526575 GCCATGGGTTGTGTGACAGG 61.527 60.000 15.13 0.00 0.00 4.00
4451 5046 1.526575 CCATGGGTTGTGTGACAGGC 61.527 60.000 2.85 0.00 0.00 4.85
4452 5047 1.228552 ATGGGTTGTGTGACAGGCC 60.229 57.895 0.00 0.00 0.00 5.19
4453 5048 2.005606 ATGGGTTGTGTGACAGGCCA 62.006 55.000 5.01 0.00 30.11 5.36
4454 5049 1.454847 GGGTTGTGTGACAGGCCAA 60.455 57.895 5.01 0.00 30.11 4.52
4455 5050 1.455383 GGGTTGTGTGACAGGCCAAG 61.455 60.000 5.01 0.00 30.11 3.61
4456 5051 1.360192 GTTGTGTGACAGGCCAAGC 59.640 57.895 5.01 0.00 0.00 4.01
4457 5052 1.077140 TTGTGTGACAGGCCAAGCA 60.077 52.632 5.01 0.00 0.00 3.91
4458 5053 1.383456 TTGTGTGACAGGCCAAGCAC 61.383 55.000 5.01 10.30 0.00 4.40
4459 5054 2.203337 TGTGACAGGCCAAGCACC 60.203 61.111 5.01 0.00 0.00 5.01
4460 5055 2.985847 GTGACAGGCCAAGCACCC 60.986 66.667 5.01 0.00 0.00 4.61
4461 5056 4.284550 TGACAGGCCAAGCACCCC 62.285 66.667 5.01 0.00 0.00 4.95
4462 5057 3.971702 GACAGGCCAAGCACCCCT 61.972 66.667 5.01 0.00 0.00 4.79
4463 5058 3.927481 GACAGGCCAAGCACCCCTC 62.927 68.421 5.01 0.00 0.00 4.30
4464 5059 4.748144 CAGGCCAAGCACCCCTCC 62.748 72.222 5.01 0.00 0.00 4.30
4466 5061 4.748144 GGCCAAGCACCCCTCCTG 62.748 72.222 0.00 0.00 0.00 3.86
4467 5062 4.748144 GCCAAGCACCCCTCCTGG 62.748 72.222 0.00 0.00 0.00 4.45
4468 5063 3.260100 CCAAGCACCCCTCCTGGT 61.260 66.667 0.00 0.00 39.96 4.00
4474 5069 2.621115 ACCCCTCCTGGTGTCTGT 59.379 61.111 0.00 0.00 37.20 3.41
4475 5070 1.073706 ACCCCTCCTGGTGTCTGTT 60.074 57.895 0.00 0.00 37.20 3.16
4476 5071 1.376466 CCCCTCCTGGTGTCTGTTG 59.624 63.158 0.00 0.00 0.00 3.33
4477 5072 1.418908 CCCCTCCTGGTGTCTGTTGT 61.419 60.000 0.00 0.00 0.00 3.32
4478 5073 0.474184 CCCTCCTGGTGTCTGTTGTT 59.526 55.000 0.00 0.00 0.00 2.83
4479 5074 1.133792 CCCTCCTGGTGTCTGTTGTTT 60.134 52.381 0.00 0.00 0.00 2.83
4480 5075 2.222027 CCTCCTGGTGTCTGTTGTTTC 58.778 52.381 0.00 0.00 0.00 2.78
4481 5076 2.421388 CCTCCTGGTGTCTGTTGTTTCA 60.421 50.000 0.00 0.00 0.00 2.69
4482 5077 2.614057 CTCCTGGTGTCTGTTGTTTCAC 59.386 50.000 0.00 0.00 0.00 3.18
4485 5080 2.844122 GGTGTCTGTTGTTTCACCAC 57.156 50.000 8.09 0.00 46.44 4.16
4486 5081 2.088423 GGTGTCTGTTGTTTCACCACA 58.912 47.619 8.09 0.00 46.44 4.17
4487 5082 2.159435 GGTGTCTGTTGTTTCACCACAC 60.159 50.000 8.09 0.00 46.44 3.82
4488 5083 2.088423 TGTCTGTTGTTTCACCACACC 58.912 47.619 0.00 0.00 0.00 4.16
4489 5084 1.063469 GTCTGTTGTTTCACCACACCG 59.937 52.381 0.00 0.00 0.00 4.94
4490 5085 0.248458 CTGTTGTTTCACCACACCGC 60.248 55.000 0.00 0.00 0.00 5.68
4491 5086 1.065109 GTTGTTTCACCACACCGCC 59.935 57.895 0.00 0.00 0.00 6.13
4492 5087 1.378646 TTGTTTCACCACACCGCCA 60.379 52.632 0.00 0.00 0.00 5.69
4493 5088 1.380403 TTGTTTCACCACACCGCCAG 61.380 55.000 0.00 0.00 0.00 4.85
4494 5089 2.203280 TTTCACCACACCGCCAGG 60.203 61.111 0.00 0.00 45.13 4.45
4495 5090 3.783362 TTTCACCACACCGCCAGGG 62.783 63.158 0.00 0.00 43.47 4.45
4499 5094 4.033776 CCACACCGCCAGGGACAT 62.034 66.667 0.00 0.00 43.47 3.06
4500 5095 2.436646 CACACCGCCAGGGACATC 60.437 66.667 0.00 0.00 43.47 3.06
4501 5096 2.927856 ACACCGCCAGGGACATCA 60.928 61.111 0.00 0.00 43.47 3.07
4502 5097 2.350895 CACCGCCAGGGACATCAA 59.649 61.111 0.00 0.00 43.47 2.57
4503 5098 1.077501 CACCGCCAGGGACATCAAT 60.078 57.895 0.00 0.00 43.47 2.57
4504 5099 1.077501 ACCGCCAGGGACATCAATG 60.078 57.895 0.00 0.00 43.47 2.82
4505 5100 1.224315 CCGCCAGGGACATCAATGA 59.776 57.895 0.00 0.00 38.47 2.57
4506 5101 1.097547 CCGCCAGGGACATCAATGAC 61.098 60.000 0.00 0.00 38.47 3.06
4507 5102 1.097547 CGCCAGGGACATCAATGACC 61.098 60.000 3.29 3.29 41.01 4.02
4508 5103 0.257039 GCCAGGGACATCAATGACCT 59.743 55.000 10.54 7.93 41.39 3.85
4509 5104 1.748591 GCCAGGGACATCAATGACCTC 60.749 57.143 10.54 2.82 41.39 3.85
4510 5105 1.473965 CCAGGGACATCAATGACCTCG 60.474 57.143 10.54 3.59 41.39 4.63
4511 5106 1.208052 CAGGGACATCAATGACCTCGT 59.792 52.381 10.54 0.00 41.39 4.18
4512 5107 1.482593 AGGGACATCAATGACCTCGTC 59.517 52.381 10.54 0.00 41.39 4.20
4513 5108 1.207089 GGGACATCAATGACCTCGTCA 59.793 52.381 10.54 0.00 46.90 4.35
4514 5109 2.544685 GGACATCAATGACCTCGTCAG 58.455 52.381 4.53 0.00 46.04 3.51
4515 5110 2.166459 GGACATCAATGACCTCGTCAGA 59.834 50.000 4.53 0.00 46.04 3.27
4516 5111 3.368427 GGACATCAATGACCTCGTCAGAA 60.368 47.826 4.53 0.00 46.04 3.02
4517 5112 3.854666 ACATCAATGACCTCGTCAGAAG 58.145 45.455 0.55 0.00 46.04 2.85
4518 5113 3.259374 ACATCAATGACCTCGTCAGAAGT 59.741 43.478 0.55 0.00 46.04 3.01
4519 5114 4.462834 ACATCAATGACCTCGTCAGAAGTA 59.537 41.667 0.55 0.00 46.04 2.24
4520 5115 4.436242 TCAATGACCTCGTCAGAAGTAC 57.564 45.455 0.55 0.00 46.04 2.73
4521 5116 3.119955 TCAATGACCTCGTCAGAAGTACG 60.120 47.826 0.55 0.00 46.04 3.67
4522 5117 1.888215 TGACCTCGTCAGAAGTACGT 58.112 50.000 0.00 0.00 37.67 3.57
4523 5118 1.534163 TGACCTCGTCAGAAGTACGTG 59.466 52.381 0.00 0.00 37.67 4.49
4524 5119 1.802960 GACCTCGTCAGAAGTACGTGA 59.197 52.381 0.00 0.00 41.08 4.35
4525 5120 2.419324 GACCTCGTCAGAAGTACGTGAT 59.581 50.000 0.00 0.00 41.08 3.06
4526 5121 2.161808 ACCTCGTCAGAAGTACGTGATG 59.838 50.000 0.00 8.18 41.08 3.07
4527 5122 2.418976 CCTCGTCAGAAGTACGTGATGA 59.581 50.000 13.75 13.75 41.08 2.92
4528 5123 3.065510 CCTCGTCAGAAGTACGTGATGAT 59.934 47.826 14.44 0.00 37.92 2.45
4529 5124 4.274421 TCGTCAGAAGTACGTGATGATC 57.726 45.455 0.00 0.00 41.08 2.92
4530 5125 3.687698 TCGTCAGAAGTACGTGATGATCA 59.312 43.478 0.00 0.00 41.08 2.92
4531 5126 4.031691 CGTCAGAAGTACGTGATGATCAG 58.968 47.826 0.09 0.00 35.66 2.90
4532 5127 4.355437 GTCAGAAGTACGTGATGATCAGG 58.645 47.826 13.06 13.06 38.16 3.86
4533 5128 3.119291 CAGAAGTACGTGATGATCAGGC 58.881 50.000 14.41 0.42 35.83 4.85
4534 5129 2.101582 AGAAGTACGTGATGATCAGGCC 59.898 50.000 14.41 0.00 35.83 5.19
4535 5130 0.385751 AGTACGTGATGATCAGGCCG 59.614 55.000 14.41 8.51 35.83 6.13
4536 5131 0.384309 GTACGTGATGATCAGGCCGA 59.616 55.000 14.41 0.00 35.83 5.54
4537 5132 1.107945 TACGTGATGATCAGGCCGAA 58.892 50.000 14.41 0.00 35.83 4.30
4538 5133 0.460284 ACGTGATGATCAGGCCGAAC 60.460 55.000 14.41 0.00 35.83 3.95
4539 5134 1.154205 CGTGATGATCAGGCCGAACC 61.154 60.000 0.09 0.00 39.61 3.62
4550 5145 4.820744 CCGAACCTGGGCCCCATG 62.821 72.222 22.27 10.32 30.82 3.66
4551 5146 4.820744 CGAACCTGGGCCCCATGG 62.821 72.222 22.27 21.00 30.82 3.66
4554 5149 3.920355 AACCTGGGCCCCATGGGTA 62.920 63.158 29.33 11.59 46.51 3.69
4555 5150 2.782702 CCTGGGCCCCATGGGTAT 60.783 66.667 29.33 0.00 46.51 2.73
4556 5151 1.465188 CCTGGGCCCCATGGGTATA 60.465 63.158 29.33 11.59 46.51 1.47
4557 5152 0.850883 CCTGGGCCCCATGGGTATAT 60.851 60.000 29.33 0.00 46.51 0.86
4558 5153 0.332632 CTGGGCCCCATGGGTATATG 59.667 60.000 29.33 14.59 46.51 1.78
4559 5154 0.103661 TGGGCCCCATGGGTATATGA 60.104 55.000 29.33 5.22 46.51 2.15
4560 5155 1.080638 GGGCCCCATGGGTATATGAA 58.919 55.000 29.33 0.00 46.51 2.57
4561 5156 1.431243 GGGCCCCATGGGTATATGAAA 59.569 52.381 29.33 0.00 46.51 2.69
4562 5157 2.525368 GGCCCCATGGGTATATGAAAC 58.475 52.381 29.33 6.73 46.51 2.78
4563 5158 2.158385 GGCCCCATGGGTATATGAAACA 60.158 50.000 29.33 0.00 46.51 2.83
4564 5159 3.502119 GGCCCCATGGGTATATGAAACAT 60.502 47.826 29.33 0.00 46.51 2.71
4565 5160 3.511146 GCCCCATGGGTATATGAAACATG 59.489 47.826 29.33 10.09 46.51 3.21
4566 5161 4.739793 CCCCATGGGTATATGAAACATGT 58.260 43.478 29.33 0.00 38.25 3.21
4567 5162 4.766891 CCCCATGGGTATATGAAACATGTC 59.233 45.833 29.33 0.00 38.25 3.06
4568 5163 5.458069 CCCCATGGGTATATGAAACATGTCT 60.458 44.000 29.33 0.00 38.25 3.41
4569 5164 6.070656 CCCATGGGTATATGAAACATGTCTT 58.929 40.000 23.93 0.00 37.74 3.01
4570 5165 6.016024 CCCATGGGTATATGAAACATGTCTTG 60.016 42.308 23.93 0.00 37.74 3.02
4571 5166 6.772233 CCATGGGTATATGAAACATGTCTTGA 59.228 38.462 2.85 0.00 37.74 3.02
4572 5167 7.285172 CCATGGGTATATGAAACATGTCTTGAA 59.715 37.037 2.85 0.00 37.74 2.69
4573 5168 8.853126 CATGGGTATATGAAACATGTCTTGAAT 58.147 33.333 0.00 0.00 35.44 2.57
4574 5169 8.821686 TGGGTATATGAAACATGTCTTGAATT 57.178 30.769 0.00 0.00 0.00 2.17
4575 5170 9.253832 TGGGTATATGAAACATGTCTTGAATTT 57.746 29.630 0.00 0.00 0.00 1.82
4576 5171 9.736023 GGGTATATGAAACATGTCTTGAATTTC 57.264 33.333 0.00 0.00 0.00 2.17
4577 5172 9.438291 GGTATATGAAACATGTCTTGAATTTCG 57.562 33.333 0.00 0.00 32.99 3.46
4583 5178 9.958234 TGAAACATGTCTTGAATTTCGATTTAA 57.042 25.926 0.00 0.00 32.99 1.52
4586 5181 8.970691 ACATGTCTTGAATTTCGATTTAAAGG 57.029 30.769 0.00 0.00 0.00 3.11
4587 5182 8.792633 ACATGTCTTGAATTTCGATTTAAAGGA 58.207 29.630 0.00 0.00 0.00 3.36
4588 5183 9.624697 CATGTCTTGAATTTCGATTTAAAGGAA 57.375 29.630 0.00 0.00 0.00 3.36
4621 5216 7.845617 TTTTTGTTCTGTTATATGCGTGTTC 57.154 32.000 0.00 0.00 0.00 3.18
4622 5217 6.795098 TTTGTTCTGTTATATGCGTGTTCT 57.205 33.333 0.00 0.00 0.00 3.01
4623 5218 6.403333 TTGTTCTGTTATATGCGTGTTCTC 57.597 37.500 0.00 0.00 0.00 2.87
4624 5219 4.868171 TGTTCTGTTATATGCGTGTTCTCC 59.132 41.667 0.00 0.00 0.00 3.71
4625 5220 4.729227 TCTGTTATATGCGTGTTCTCCA 57.271 40.909 0.00 0.00 0.00 3.86
4626 5221 4.430007 TCTGTTATATGCGTGTTCTCCAC 58.570 43.478 0.00 0.00 40.89 4.02
4627 5222 4.159693 TCTGTTATATGCGTGTTCTCCACT 59.840 41.667 0.00 0.00 42.20 4.00
4628 5223 5.358725 TCTGTTATATGCGTGTTCTCCACTA 59.641 40.000 0.00 0.00 42.20 2.74
4629 5224 6.040504 TCTGTTATATGCGTGTTCTCCACTAT 59.959 38.462 0.00 0.00 42.20 2.12
4630 5225 7.229907 TCTGTTATATGCGTGTTCTCCACTATA 59.770 37.037 0.00 0.00 42.20 1.31
4631 5226 7.892609 TGTTATATGCGTGTTCTCCACTATAT 58.107 34.615 0.00 0.00 42.20 0.86
4632 5227 7.812669 TGTTATATGCGTGTTCTCCACTATATG 59.187 37.037 0.00 0.00 42.20 1.78
4633 5228 4.672587 ATGCGTGTTCTCCACTATATGT 57.327 40.909 0.00 0.00 42.20 2.29
4634 5229 5.784578 ATGCGTGTTCTCCACTATATGTA 57.215 39.130 0.00 0.00 42.20 2.29
4635 5230 4.928601 TGCGTGTTCTCCACTATATGTAC 58.071 43.478 0.00 0.00 42.20 2.90
4636 5231 4.643334 TGCGTGTTCTCCACTATATGTACT 59.357 41.667 0.00 0.00 42.20 2.73
4637 5232 5.126545 TGCGTGTTCTCCACTATATGTACTT 59.873 40.000 0.00 0.00 42.20 2.24
4638 5233 6.040878 GCGTGTTCTCCACTATATGTACTTT 58.959 40.000 0.00 0.00 42.20 2.66
4639 5234 6.019801 GCGTGTTCTCCACTATATGTACTTTG 60.020 42.308 0.00 0.00 42.20 2.77
4640 5235 6.019801 CGTGTTCTCCACTATATGTACTTTGC 60.020 42.308 0.00 0.00 42.20 3.68
4641 5236 7.042335 GTGTTCTCCACTATATGTACTTTGCT 58.958 38.462 0.00 0.00 41.11 3.91
4642 5237 7.549488 GTGTTCTCCACTATATGTACTTTGCTT 59.451 37.037 0.00 0.00 41.11 3.91
4643 5238 8.100791 TGTTCTCCACTATATGTACTTTGCTTT 58.899 33.333 0.00 0.00 0.00 3.51
4644 5239 8.391106 GTTCTCCACTATATGTACTTTGCTTTG 58.609 37.037 0.00 0.00 0.00 2.77
4645 5240 7.620880 TCTCCACTATATGTACTTTGCTTTGT 58.379 34.615 0.00 0.00 0.00 2.83
4646 5241 8.100791 TCTCCACTATATGTACTTTGCTTTGTT 58.899 33.333 0.00 0.00 0.00 2.83
4647 5242 9.378551 CTCCACTATATGTACTTTGCTTTGTTA 57.621 33.333 0.00 0.00 0.00 2.41
4648 5243 9.899661 TCCACTATATGTACTTTGCTTTGTTAT 57.100 29.630 0.00 0.00 0.00 1.89
4650 5245 9.849607 CACTATATGTACTTTGCTTTGTTATCG 57.150 33.333 0.00 0.00 0.00 2.92
4651 5246 9.811995 ACTATATGTACTTTGCTTTGTTATCGA 57.188 29.630 0.00 0.00 0.00 3.59
4656 5251 8.500837 TGTACTTTGCTTTGTTATCGAAATTG 57.499 30.769 0.00 0.00 0.00 2.32
4657 5252 8.132362 TGTACTTTGCTTTGTTATCGAAATTGT 58.868 29.630 0.00 0.00 0.00 2.71
4658 5253 7.623268 ACTTTGCTTTGTTATCGAAATTGTC 57.377 32.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 53 1.467920 GCCTAGGCTGTTGCAAGAAT 58.532 50.000 27.17 0.00 41.91 2.40
100 102 4.347453 AGCCGGCGCTTTGCAAAG 62.347 61.111 30.70 30.70 45.55 2.77
155 158 3.275088 AGTGATTCCGTCGCTCGT 58.725 55.556 0.00 0.00 44.18 4.18
172 175 1.300931 GTGCCACTCACAGCTTCGA 60.301 57.895 0.00 0.00 44.98 3.71
181 184 3.220658 TCGTCGTGGTGCCACTCA 61.221 61.111 17.96 3.19 44.16 3.41
185 188 4.634133 GTCGTCGTCGTGGTGCCA 62.634 66.667 1.33 0.00 38.33 4.92
194 197 2.202324 GCGTCTCTGGTCGTCGTC 60.202 66.667 0.00 0.00 0.00 4.20
214 217 3.362399 ATCGTGACTGCTGCCCGAG 62.362 63.158 0.00 0.00 0.00 4.63
215 218 3.356639 GATCGTGACTGCTGCCCGA 62.357 63.158 0.00 0.00 0.00 5.14
272 275 1.668151 AAGGTCGAGCTTCCGTTGC 60.668 57.895 23.57 0.00 0.00 4.17
333 336 0.917533 AGCATGAAGGAGATGGTGCT 59.082 50.000 0.00 0.00 38.03 4.40
472 490 9.467258 CAGAGATTTTGTTGCAGAATTTTCTTA 57.533 29.630 0.00 0.00 34.74 2.10
522 540 7.415653 GCGGAAATTCTAAAGATCACAGGATTT 60.416 37.037 7.03 7.03 31.53 2.17
538 556 4.074970 AGTGATCTTGTTGCGGAAATTCT 58.925 39.130 0.00 0.00 0.00 2.40
607 625 4.730613 GCAATCATCCGAGCGTGTATTTTT 60.731 41.667 0.00 0.00 0.00 1.94
608 626 3.242739 GCAATCATCCGAGCGTGTATTTT 60.243 43.478 0.00 0.00 0.00 1.82
609 627 2.287915 GCAATCATCCGAGCGTGTATTT 59.712 45.455 0.00 0.00 0.00 1.40
610 628 1.867233 GCAATCATCCGAGCGTGTATT 59.133 47.619 0.00 0.00 0.00 1.89
611 629 1.202521 TGCAATCATCCGAGCGTGTAT 60.203 47.619 0.00 0.00 0.00 2.29
612 630 0.174617 TGCAATCATCCGAGCGTGTA 59.825 50.000 0.00 0.00 0.00 2.90
613 631 0.673333 TTGCAATCATCCGAGCGTGT 60.673 50.000 0.00 0.00 0.00 4.49
614 632 0.247814 GTTGCAATCATCCGAGCGTG 60.248 55.000 0.59 0.00 0.00 5.34
615 633 0.673333 TGTTGCAATCATCCGAGCGT 60.673 50.000 0.59 0.00 0.00 5.07
616 634 0.447406 TTGTTGCAATCATCCGAGCG 59.553 50.000 0.59 0.00 0.00 5.03
617 635 1.796617 GCTTGTTGCAATCATCCGAGC 60.797 52.381 0.59 6.44 42.31 5.03
618 636 2.184385 GCTTGTTGCAATCATCCGAG 57.816 50.000 0.59 0.00 42.31 4.63
630 648 1.672363 TCTGCAACAGTCTGCTTGTTG 59.328 47.619 12.40 12.40 43.07 3.33
631 649 1.945394 CTCTGCAACAGTCTGCTTGTT 59.055 47.619 0.00 0.00 43.07 2.83
632 650 1.590932 CTCTGCAACAGTCTGCTTGT 58.409 50.000 0.00 0.00 43.07 3.16
633 651 0.873054 CCTCTGCAACAGTCTGCTTG 59.127 55.000 0.00 5.41 43.07 4.01
634 652 0.250640 CCCTCTGCAACAGTCTGCTT 60.251 55.000 0.00 0.00 43.07 3.91
635 653 1.374190 CCCTCTGCAACAGTCTGCT 59.626 57.895 0.00 0.00 43.07 4.24
636 654 0.536006 AACCCTCTGCAACAGTCTGC 60.536 55.000 0.00 1.90 42.95 4.26
637 655 2.839486 TAACCCTCTGCAACAGTCTG 57.161 50.000 0.00 0.00 32.61 3.51
638 656 3.560025 CCATTAACCCTCTGCAACAGTCT 60.560 47.826 0.00 0.00 32.61 3.24
639 657 2.749621 CCATTAACCCTCTGCAACAGTC 59.250 50.000 0.00 0.00 32.61 3.51
640 658 2.108250 ACCATTAACCCTCTGCAACAGT 59.892 45.455 0.00 0.00 32.61 3.55
641 659 2.749621 GACCATTAACCCTCTGCAACAG 59.250 50.000 0.00 0.00 0.00 3.16
642 660 2.107378 TGACCATTAACCCTCTGCAACA 59.893 45.455 0.00 0.00 0.00 3.33
643 661 2.790433 TGACCATTAACCCTCTGCAAC 58.210 47.619 0.00 0.00 0.00 4.17
644 662 3.153919 GTTGACCATTAACCCTCTGCAA 58.846 45.455 0.00 0.00 0.00 4.08
645 663 2.107378 TGTTGACCATTAACCCTCTGCA 59.893 45.455 0.00 0.00 0.00 4.41
646 664 2.790433 TGTTGACCATTAACCCTCTGC 58.210 47.619 0.00 0.00 0.00 4.26
647 665 4.651778 TCTTGTTGACCATTAACCCTCTG 58.348 43.478 0.00 0.00 0.00 3.35
648 666 4.263506 CCTCTTGTTGACCATTAACCCTCT 60.264 45.833 0.00 0.00 0.00 3.69
649 667 4.010349 CCTCTTGTTGACCATTAACCCTC 58.990 47.826 0.00 0.00 0.00 4.30
650 668 3.814316 GCCTCTTGTTGACCATTAACCCT 60.814 47.826 0.00 0.00 0.00 4.34
651 669 2.492088 GCCTCTTGTTGACCATTAACCC 59.508 50.000 0.00 0.00 0.00 4.11
652 670 3.421844 AGCCTCTTGTTGACCATTAACC 58.578 45.455 0.00 0.00 0.00 2.85
653 671 5.453567 AAAGCCTCTTGTTGACCATTAAC 57.546 39.130 0.00 0.00 0.00 2.01
654 672 5.010617 GGAAAAGCCTCTTGTTGACCATTAA 59.989 40.000 0.00 0.00 0.00 1.40
655 673 4.522789 GGAAAAGCCTCTTGTTGACCATTA 59.477 41.667 0.00 0.00 0.00 1.90
656 674 3.321968 GGAAAAGCCTCTTGTTGACCATT 59.678 43.478 0.00 0.00 0.00 3.16
657 675 2.893489 GGAAAAGCCTCTTGTTGACCAT 59.107 45.455 0.00 0.00 0.00 3.55
658 676 2.306847 GGAAAAGCCTCTTGTTGACCA 58.693 47.619 0.00 0.00 0.00 4.02
659 677 1.266989 CGGAAAAGCCTCTTGTTGACC 59.733 52.381 0.00 0.00 0.00 4.02
660 678 1.335051 GCGGAAAAGCCTCTTGTTGAC 60.335 52.381 0.00 0.00 0.00 3.18
661 679 0.951558 GCGGAAAAGCCTCTTGTTGA 59.048 50.000 0.00 0.00 0.00 3.18
662 680 0.667993 TGCGGAAAAGCCTCTTGTTG 59.332 50.000 0.00 0.00 36.02 3.33
663 681 1.067060 GTTGCGGAAAAGCCTCTTGTT 59.933 47.619 0.00 0.00 36.02 2.83
664 682 0.668535 GTTGCGGAAAAGCCTCTTGT 59.331 50.000 0.00 0.00 36.02 3.16
665 683 0.667993 TGTTGCGGAAAAGCCTCTTG 59.332 50.000 0.00 0.00 36.02 3.02
666 684 0.668535 GTGTTGCGGAAAAGCCTCTT 59.331 50.000 0.00 0.00 36.02 2.85
667 685 1.172812 GGTGTTGCGGAAAAGCCTCT 61.173 55.000 0.00 0.00 36.02 3.69
668 686 1.285950 GGTGTTGCGGAAAAGCCTC 59.714 57.895 0.00 0.00 36.02 4.70
669 687 1.454847 TGGTGTTGCGGAAAAGCCT 60.455 52.632 6.57 0.00 36.02 4.58
670 688 1.299850 GTGGTGTTGCGGAAAAGCC 60.300 57.895 6.57 2.80 36.02 4.35
671 689 0.317854 GAGTGGTGTTGCGGAAAAGC 60.318 55.000 1.57 1.57 37.71 3.51
672 690 1.308998 AGAGTGGTGTTGCGGAAAAG 58.691 50.000 0.00 0.00 0.00 2.27
673 691 1.403679 CAAGAGTGGTGTTGCGGAAAA 59.596 47.619 0.00 0.00 0.00 2.29
674 692 1.021202 CAAGAGTGGTGTTGCGGAAA 58.979 50.000 0.00 0.00 0.00 3.13
675 693 0.107410 ACAAGAGTGGTGTTGCGGAA 60.107 50.000 0.00 0.00 29.81 4.30
676 694 0.107410 AACAAGAGTGGTGTTGCGGA 60.107 50.000 0.00 0.00 37.80 5.54
677 695 0.029300 CAACAAGAGTGGTGTTGCGG 59.971 55.000 4.52 0.00 46.63 5.69
678 696 3.532138 CAACAAGAGTGGTGTTGCG 57.468 52.632 4.52 0.00 46.63 4.85
681 699 2.166254 CCTTTGCAACAAGAGTGGTGTT 59.834 45.455 0.00 0.00 44.95 3.32
682 700 1.750778 CCTTTGCAACAAGAGTGGTGT 59.249 47.619 0.00 0.00 44.95 4.16
683 701 2.023673 TCCTTTGCAACAAGAGTGGTG 58.976 47.619 0.00 0.00 46.01 4.17
684 702 2.024414 GTCCTTTGCAACAAGAGTGGT 58.976 47.619 0.00 0.00 0.00 4.16
685 703 2.301346 AGTCCTTTGCAACAAGAGTGG 58.699 47.619 0.00 0.00 0.00 4.00
686 704 4.380531 TCTAGTCCTTTGCAACAAGAGTG 58.619 43.478 0.00 0.00 0.00 3.51
687 705 4.689612 TCTAGTCCTTTGCAACAAGAGT 57.310 40.909 0.00 1.80 0.00 3.24
688 706 4.142730 GCATCTAGTCCTTTGCAACAAGAG 60.143 45.833 0.00 0.00 35.22 2.85
689 707 3.753272 GCATCTAGTCCTTTGCAACAAGA 59.247 43.478 0.00 0.00 35.22 3.02
690 708 3.755378 AGCATCTAGTCCTTTGCAACAAG 59.245 43.478 0.00 0.00 37.56 3.16
691 709 3.754965 AGCATCTAGTCCTTTGCAACAA 58.245 40.909 0.00 0.00 37.56 2.83
692 710 3.423539 AGCATCTAGTCCTTTGCAACA 57.576 42.857 0.00 0.00 37.56 3.33
693 711 4.201724 CGTAAGCATCTAGTCCTTTGCAAC 60.202 45.833 0.00 0.00 37.56 4.17
694 712 3.932710 CGTAAGCATCTAGTCCTTTGCAA 59.067 43.478 0.00 0.00 37.56 4.08
695 713 3.056107 ACGTAAGCATCTAGTCCTTTGCA 60.056 43.478 0.00 0.00 45.62 4.08
696 714 3.307242 CACGTAAGCATCTAGTCCTTTGC 59.693 47.826 0.00 0.00 45.62 3.68
697 715 3.865745 CCACGTAAGCATCTAGTCCTTTG 59.134 47.826 0.00 0.00 45.62 2.77
698 716 3.118738 CCCACGTAAGCATCTAGTCCTTT 60.119 47.826 0.00 0.00 45.62 3.11
699 717 2.431057 CCCACGTAAGCATCTAGTCCTT 59.569 50.000 0.00 0.00 45.62 3.36
700 718 2.032620 CCCACGTAAGCATCTAGTCCT 58.967 52.381 0.00 0.00 45.62 3.85
701 719 1.755380 ACCCACGTAAGCATCTAGTCC 59.245 52.381 0.00 0.00 45.62 3.85
702 720 3.881688 TCTACCCACGTAAGCATCTAGTC 59.118 47.826 0.00 0.00 45.62 2.59
703 721 3.894759 TCTACCCACGTAAGCATCTAGT 58.105 45.455 0.00 0.00 45.62 2.57
704 722 4.378563 CGATCTACCCACGTAAGCATCTAG 60.379 50.000 0.00 0.00 45.62 2.43
705 723 3.501062 CGATCTACCCACGTAAGCATCTA 59.499 47.826 0.00 0.00 45.62 1.98
706 724 2.293677 CGATCTACCCACGTAAGCATCT 59.706 50.000 0.00 0.00 45.62 2.90
707 725 2.607282 CCGATCTACCCACGTAAGCATC 60.607 54.545 0.00 0.00 45.62 3.91
708 726 1.340248 CCGATCTACCCACGTAAGCAT 59.660 52.381 0.00 0.00 45.62 3.79
709 727 0.742505 CCGATCTACCCACGTAAGCA 59.257 55.000 0.00 0.00 45.62 3.91
710 728 1.027357 TCCGATCTACCCACGTAAGC 58.973 55.000 0.00 0.00 45.62 3.09
712 730 1.016627 CGTCCGATCTACCCACGTAA 58.983 55.000 0.00 0.00 0.00 3.18
713 731 0.815213 CCGTCCGATCTACCCACGTA 60.815 60.000 0.00 0.00 0.00 3.57
714 732 2.117156 CCGTCCGATCTACCCACGT 61.117 63.158 0.00 0.00 0.00 4.49
715 733 2.719979 CCGTCCGATCTACCCACG 59.280 66.667 0.00 0.00 0.00 4.94
716 734 2.416260 GCCGTCCGATCTACCCAC 59.584 66.667 0.00 0.00 0.00 4.61
717 735 2.836360 GGCCGTCCGATCTACCCA 60.836 66.667 0.00 0.00 0.00 4.51
727 745 0.380378 TGTATACGTAACGGCCGTCC 59.620 55.000 34.29 23.64 39.60 4.79
728 746 2.031682 AGATGTATACGTAACGGCCGTC 60.032 50.000 34.29 19.69 39.60 4.79
729 747 1.949525 AGATGTATACGTAACGGCCGT 59.050 47.619 28.70 28.70 42.06 5.68
730 748 2.693797 AGATGTATACGTAACGGCCG 57.306 50.000 26.86 26.86 0.00 6.13
731 749 4.860907 CCATTAGATGTATACGTAACGGCC 59.139 45.833 0.00 0.00 0.00 6.13
732 750 5.464168 ACCATTAGATGTATACGTAACGGC 58.536 41.667 0.00 0.00 0.00 5.68
733 751 6.671190 TGACCATTAGATGTATACGTAACGG 58.329 40.000 0.00 0.91 0.00 4.44
734 752 6.304922 GCTGACCATTAGATGTATACGTAACG 59.695 42.308 0.00 0.00 0.00 3.18
735 753 7.143340 TGCTGACCATTAGATGTATACGTAAC 58.857 38.462 0.00 0.11 0.00 2.50
736 754 7.279750 TGCTGACCATTAGATGTATACGTAA 57.720 36.000 0.00 0.00 0.00 3.18
737 755 6.887626 TGCTGACCATTAGATGTATACGTA 57.112 37.500 0.00 0.00 0.00 3.57
738 756 5.784578 TGCTGACCATTAGATGTATACGT 57.215 39.130 0.00 0.00 0.00 3.57
739 757 5.635280 CCTTGCTGACCATTAGATGTATACG 59.365 44.000 0.00 0.00 0.00 3.06
740 758 5.409826 GCCTTGCTGACCATTAGATGTATAC 59.590 44.000 0.00 0.00 0.00 1.47
741 759 5.551233 GCCTTGCTGACCATTAGATGTATA 58.449 41.667 0.00 0.00 0.00 1.47
742 760 4.392940 GCCTTGCTGACCATTAGATGTAT 58.607 43.478 0.00 0.00 0.00 2.29
743 761 3.741075 CGCCTTGCTGACCATTAGATGTA 60.741 47.826 0.00 0.00 0.00 2.29
744 762 2.648059 GCCTTGCTGACCATTAGATGT 58.352 47.619 0.00 0.00 0.00 3.06
745 763 1.600957 CGCCTTGCTGACCATTAGATG 59.399 52.381 0.00 0.00 0.00 2.90
746 764 1.475751 CCGCCTTGCTGACCATTAGAT 60.476 52.381 0.00 0.00 0.00 1.98
747 765 0.107703 CCGCCTTGCTGACCATTAGA 60.108 55.000 0.00 0.00 0.00 2.10
748 766 1.718757 GCCGCCTTGCTGACCATTAG 61.719 60.000 0.00 0.00 0.00 1.73
749 767 1.748879 GCCGCCTTGCTGACCATTA 60.749 57.895 0.00 0.00 0.00 1.90
750 768 3.064324 GCCGCCTTGCTGACCATT 61.064 61.111 0.00 0.00 0.00 3.16
755 773 4.838152 GATCCGCCGCCTTGCTGA 62.838 66.667 0.00 0.00 0.00 4.26
756 774 4.845580 AGATCCGCCGCCTTGCTG 62.846 66.667 0.00 0.00 0.00 4.41
757 775 3.628646 AAAGATCCGCCGCCTTGCT 62.629 57.895 0.00 0.00 0.00 3.91
758 776 2.212900 AAAAAGATCCGCCGCCTTGC 62.213 55.000 0.00 0.00 0.00 4.01
759 777 1.883021 AAAAAGATCCGCCGCCTTG 59.117 52.632 0.00 0.00 0.00 3.61
760 778 4.415783 AAAAAGATCCGCCGCCTT 57.584 50.000 0.00 0.00 0.00 4.35
822 840 2.923121 CCTATGTATGCCACAAGTGCT 58.077 47.619 0.00 0.00 41.55 4.40
824 842 2.355756 GTGCCTATGTATGCCACAAGTG 59.644 50.000 0.00 0.00 41.55 3.16
826 844 2.642427 TGTGCCTATGTATGCCACAAG 58.358 47.619 0.00 0.00 41.55 3.16
882 901 1.256812 CCTTGGCTTGTCCCGAATTT 58.743 50.000 0.00 0.00 0.00 1.82
897 916 2.424956 GCCCAATTAGAGCTGAACCTTG 59.575 50.000 0.00 0.00 0.00 3.61
1055 1301 3.872728 CGACGCGACGGAGGATGA 61.873 66.667 22.72 0.00 0.00 2.92
1284 1530 2.567497 GCTCTTGCAAAGCTGGGCA 61.567 57.895 19.77 8.37 45.70 5.36
1378 1624 4.624336 ACAGTCAATTGCAACAACGTAA 57.376 36.364 0.00 0.00 0.00 3.18
1509 1755 7.729116 AGCATTTTCCATCCAATAAACCATAG 58.271 34.615 0.00 0.00 0.00 2.23
1558 1804 0.247974 GCTCATGCTGCACACGAATC 60.248 55.000 3.57 0.00 36.03 2.52
1565 1811 1.012486 GCCTTTTGCTCATGCTGCAC 61.012 55.000 3.57 0.00 40.40 4.57
1566 1812 1.290955 GCCTTTTGCTCATGCTGCA 59.709 52.632 4.13 4.13 40.48 4.41
1590 1836 6.426980 TTCTGAACAAATCATTGAGGATCG 57.573 37.500 0.00 0.00 38.94 3.69
1621 1867 6.358178 TGGTACAACCATGAACTGAAAGTAA 58.642 36.000 0.00 0.00 46.69 2.24
1656 1902 3.723260 TCATGAACACGAACAGCACTTA 58.277 40.909 0.00 0.00 0.00 2.24
1681 1928 7.944729 ATGGTAACTGACAATTAGAGCATTT 57.055 32.000 0.00 0.00 37.61 2.32
1878 2127 8.402798 TGCCAAAAACTCTGTATCTTTATTCA 57.597 30.769 0.00 0.00 0.00 2.57
2447 2711 7.174080 GCAATAAAATGAGAAGGGAGAGATACC 59.826 40.741 0.00 0.00 0.00 2.73
2588 2852 9.745323 GTTACCTGAACAATAACAACGTAATAC 57.255 33.333 0.00 0.00 38.02 1.89
2594 2858 5.934935 AGGTTACCTGAACAATAACAACG 57.065 39.130 1.74 0.00 40.09 4.10
2960 3232 2.621338 TGCAACAGTATCTGCAGCTAC 58.379 47.619 17.98 17.98 43.44 3.58
3010 3343 1.032014 GAGCCTCACTGCACCAAAAA 58.968 50.000 0.00 0.00 0.00 1.94
3011 3344 1.165907 CGAGCCTCACTGCACCAAAA 61.166 55.000 0.00 0.00 0.00 2.44
3089 3424 3.063452 CCGGTATGTCTGTTTTCATTCCG 59.937 47.826 13.39 13.39 46.62 4.30
3187 3522 4.945246 TGTAGTTCTGTTGTCCTTCAGTC 58.055 43.478 0.00 0.00 33.89 3.51
3334 3675 5.957842 AGTCACAGTTGAAAGTTGAAACA 57.042 34.783 0.00 0.00 31.90 2.83
3377 3718 7.739295 TCATTTAGAACGTCTATTTGAGCAAC 58.261 34.615 0.00 0.00 0.00 4.17
3516 3892 9.264653 TGATAGCTTCATCTATGATAACCTGAT 57.735 33.333 0.00 0.00 36.56 2.90
3517 3893 8.526978 GTGATAGCTTCATCTATGATAACCTGA 58.473 37.037 0.00 0.00 36.54 3.86
3538 3914 5.715439 AATCCTCATCCAACTTGGTGATA 57.285 39.130 7.72 3.82 39.03 2.15
3614 3990 6.271488 TGGATTGAAAGCATTAAGGAACTG 57.729 37.500 0.00 0.00 40.86 3.16
3866 4242 0.745845 CAAGAATGTCCCCTCCGCTG 60.746 60.000 0.00 0.00 0.00 5.18
3870 4463 0.999712 TTCCCAAGAATGTCCCCTCC 59.000 55.000 0.00 0.00 0.00 4.30
4038 4631 7.882179 AGTACAACAAGACAGAAACAAACTTT 58.118 30.769 0.00 0.00 0.00 2.66
4062 4655 8.777865 TCCATTGAAAAGATGTTGAGTACTAG 57.222 34.615 0.00 0.00 0.00 2.57
4065 4658 6.150140 AGCTCCATTGAAAAGATGTTGAGTAC 59.850 38.462 0.00 0.00 0.00 2.73
4067 4660 5.075493 AGCTCCATTGAAAAGATGTTGAGT 58.925 37.500 0.00 0.00 0.00 3.41
4073 4666 6.264088 GCTAAGAAGCTCCATTGAAAAGATG 58.736 40.000 0.00 0.00 45.85 2.90
4075 4668 5.886960 GCTAAGAAGCTCCATTGAAAAGA 57.113 39.130 0.00 0.00 45.85 2.52
4111 4706 9.150348 CTCAAATTATCTAAAAATGGCGGTTTT 57.850 29.630 3.81 3.81 32.94 2.43
4112 4707 7.763985 CCTCAAATTATCTAAAAATGGCGGTTT 59.236 33.333 0.00 0.00 0.00 3.27
4116 4711 9.450807 CTAACCTCAAATTATCTAAAAATGGCG 57.549 33.333 0.00 0.00 0.00 5.69
4125 4720 7.012704 ACGTACGCTCTAACCTCAAATTATCTA 59.987 37.037 16.72 0.00 0.00 1.98
4127 4722 5.975939 ACGTACGCTCTAACCTCAAATTATC 59.024 40.000 16.72 0.00 0.00 1.75
4132 4727 3.648339 AACGTACGCTCTAACCTCAAA 57.352 42.857 16.72 0.00 0.00 2.69
4133 4728 3.243501 ACAAACGTACGCTCTAACCTCAA 60.244 43.478 16.72 0.00 0.00 3.02
4135 4730 2.660236 CACAAACGTACGCTCTAACCTC 59.340 50.000 16.72 0.00 0.00 3.85
4136 4731 2.608752 CCACAAACGTACGCTCTAACCT 60.609 50.000 16.72 0.00 0.00 3.50
4137 4732 1.723003 CCACAAACGTACGCTCTAACC 59.277 52.381 16.72 0.00 0.00 2.85
4138 4733 2.397549 ACCACAAACGTACGCTCTAAC 58.602 47.619 16.72 0.00 0.00 2.34
4139 4734 2.798976 ACCACAAACGTACGCTCTAA 57.201 45.000 16.72 0.00 0.00 2.10
4141 4736 1.862827 GAAACCACAAACGTACGCTCT 59.137 47.619 16.72 0.00 0.00 4.09
4142 4737 1.396316 CGAAACCACAAACGTACGCTC 60.396 52.381 16.72 0.00 0.00 5.03
4144 4739 0.576328 TCGAAACCACAAACGTACGC 59.424 50.000 16.72 0.00 0.00 4.42
4145 4740 2.994716 TTCGAAACCACAAACGTACG 57.005 45.000 15.01 15.01 0.00 3.67
4148 4743 1.202054 CCGTTTCGAAACCACAAACGT 60.202 47.619 29.95 0.00 46.98 3.99
4151 4746 1.132643 CACCCGTTTCGAAACCACAAA 59.867 47.619 29.95 0.00 35.51 2.83
4155 4750 2.188161 GCCACCCGTTTCGAAACCA 61.188 57.895 29.95 0.00 35.51 3.67
4157 4752 0.382873 AAAGCCACCCGTTTCGAAAC 59.617 50.000 27.37 27.37 35.59 2.78
4159 4754 0.464013 TCAAAGCCACCCGTTTCGAA 60.464 50.000 0.00 0.00 0.00 3.71
4161 4756 0.596082 AATCAAAGCCACCCGTTTCG 59.404 50.000 0.00 0.00 0.00 3.46
4163 4758 1.698506 TGAATCAAAGCCACCCGTTT 58.301 45.000 0.00 0.00 0.00 3.60
4164 4759 1.545582 CATGAATCAAAGCCACCCGTT 59.454 47.619 0.00 0.00 0.00 4.44
4165 4760 1.176527 CATGAATCAAAGCCACCCGT 58.823 50.000 0.00 0.00 0.00 5.28
4166 4761 1.402968 CTCATGAATCAAAGCCACCCG 59.597 52.381 0.00 0.00 0.00 5.28
4167 4762 2.450476 ACTCATGAATCAAAGCCACCC 58.550 47.619 0.00 0.00 0.00 4.61
4168 4763 4.096984 CCTAACTCATGAATCAAAGCCACC 59.903 45.833 0.00 0.00 0.00 4.61
4169 4764 4.439289 GCCTAACTCATGAATCAAAGCCAC 60.439 45.833 0.00 0.00 0.00 5.01
4170 4765 3.696051 GCCTAACTCATGAATCAAAGCCA 59.304 43.478 0.00 0.00 0.00 4.75
4171 4766 3.950395 AGCCTAACTCATGAATCAAAGCC 59.050 43.478 0.00 0.00 0.00 4.35
4172 4767 6.051717 TCTAGCCTAACTCATGAATCAAAGC 58.948 40.000 0.00 0.00 0.00 3.51
4173 4768 8.674263 ATTCTAGCCTAACTCATGAATCAAAG 57.326 34.615 0.00 0.00 0.00 2.77
4176 4771 9.716531 CATTATTCTAGCCTAACTCATGAATCA 57.283 33.333 0.00 0.00 30.61 2.57
4177 4772 9.717942 ACATTATTCTAGCCTAACTCATGAATC 57.282 33.333 0.00 0.00 30.61 2.52
4178 4773 9.499479 CACATTATTCTAGCCTAACTCATGAAT 57.501 33.333 0.00 0.00 31.91 2.57
4179 4774 8.486210 ACACATTATTCTAGCCTAACTCATGAA 58.514 33.333 0.00 0.00 0.00 2.57
4180 4775 8.023021 ACACATTATTCTAGCCTAACTCATGA 57.977 34.615 0.00 0.00 0.00 3.07
4181 4776 8.668510 AACACATTATTCTAGCCTAACTCATG 57.331 34.615 0.00 0.00 0.00 3.07
4183 4778 9.595823 GTTAACACATTATTCTAGCCTAACTCA 57.404 33.333 0.00 0.00 0.00 3.41
4184 4779 9.595823 TGTTAACACATTATTCTAGCCTAACTC 57.404 33.333 3.59 0.00 0.00 3.01
4185 4780 9.601217 CTGTTAACACATTATTCTAGCCTAACT 57.399 33.333 3.59 0.00 30.39 2.24
4186 4781 8.827677 CCTGTTAACACATTATTCTAGCCTAAC 58.172 37.037 3.59 0.00 30.39 2.34
4187 4782 7.497909 GCCTGTTAACACATTATTCTAGCCTAA 59.502 37.037 3.59 0.00 30.39 2.69
4188 4783 6.990349 GCCTGTTAACACATTATTCTAGCCTA 59.010 38.462 3.59 0.00 30.39 3.93
4189 4784 5.823045 GCCTGTTAACACATTATTCTAGCCT 59.177 40.000 3.59 0.00 30.39 4.58
4192 4787 6.540189 AGCAGCCTGTTAACACATTATTCTAG 59.460 38.462 3.59 0.00 30.39 2.43
4199 4794 5.982890 ATTTAGCAGCCTGTTAACACATT 57.017 34.783 3.59 0.00 30.39 2.71
4205 4800 6.713276 TGTACCTTATTTAGCAGCCTGTTAA 58.287 36.000 0.00 0.00 0.00 2.01
4225 4820 5.949952 ACCATAGGTTTTGATCCCTTTGTAC 59.050 40.000 0.00 0.00 27.29 2.90
4226 4821 6.147437 ACCATAGGTTTTGATCCCTTTGTA 57.853 37.500 0.00 0.00 27.29 2.41
4241 4836 5.142639 CCCATCAATGATCAAACCATAGGT 58.857 41.667 0.00 0.00 37.65 3.08
4242 4837 4.021719 GCCCATCAATGATCAAACCATAGG 60.022 45.833 0.00 0.00 0.00 2.57
4243 4838 4.831155 AGCCCATCAATGATCAAACCATAG 59.169 41.667 0.00 0.00 0.00 2.23
4244 4839 4.806892 AGCCCATCAATGATCAAACCATA 58.193 39.130 0.00 0.00 0.00 2.74
4245 4840 3.640029 GAGCCCATCAATGATCAAACCAT 59.360 43.478 0.00 0.00 0.00 3.55
4246 4841 3.025978 GAGCCCATCAATGATCAAACCA 58.974 45.455 0.00 0.00 0.00 3.67
4259 4854 3.624861 CAGTGATTGTACTTGAGCCCATC 59.375 47.826 0.00 0.00 0.00 3.51
4281 4876 2.354805 CCTGGGTCTAAGTGGTTAGTGC 60.355 54.545 0.00 0.00 37.50 4.40
4291 4886 0.693049 AGCACCAACCTGGGTCTAAG 59.307 55.000 0.00 0.00 43.37 2.18
4292 4887 0.690762 GAGCACCAACCTGGGTCTAA 59.309 55.000 0.00 0.00 43.37 2.10
4308 4903 5.869753 TTGTCATTTCTGCTTCTTAGAGC 57.130 39.130 0.00 0.00 43.00 4.09
4316 4911 6.127814 CCACTACATGATTGTCATTTCTGCTT 60.128 38.462 0.00 0.00 34.28 3.91
4321 4916 5.106197 TGCACCACTACATGATTGTCATTTC 60.106 40.000 0.00 0.00 34.28 2.17
4332 4927 6.707608 ACAATACAGATATGCACCACTACATG 59.292 38.462 0.00 0.00 0.00 3.21
4333 4928 6.830912 ACAATACAGATATGCACCACTACAT 58.169 36.000 0.00 0.00 0.00 2.29
4334 4929 6.233905 ACAATACAGATATGCACCACTACA 57.766 37.500 0.00 0.00 0.00 2.74
4365 4960 2.814336 GGGAACTTGAGACGAGCAAAAT 59.186 45.455 0.00 0.00 0.00 1.82
4370 4965 1.433534 CTTGGGAACTTGAGACGAGC 58.566 55.000 0.00 0.00 0.00 5.03
4384 4979 0.611618 TTGCATAGTGGTGGCTTGGG 60.612 55.000 0.00 0.00 0.00 4.12
4389 4984 1.755179 ATGAGTTGCATAGTGGTGGC 58.245 50.000 0.00 0.00 34.82 5.01
4397 4992 4.163268 TGGCCAGTAGTTATGAGTTGCATA 59.837 41.667 0.00 0.00 38.44 3.14
4406 5001 4.372656 GCTAGAGTTGGCCAGTAGTTATG 58.627 47.826 5.11 0.00 0.00 1.90
4420 5015 0.978146 ACCCATGGCTCGCTAGAGTT 60.978 55.000 6.09 0.00 46.03 3.01
4421 5016 0.978146 AACCCATGGCTCGCTAGAGT 60.978 55.000 6.09 0.00 46.03 3.24
4423 5018 1.264749 ACAACCCATGGCTCGCTAGA 61.265 55.000 6.09 0.00 0.00 2.43
4424 5019 1.091771 CACAACCCATGGCTCGCTAG 61.092 60.000 6.09 0.00 0.00 3.42
4425 5020 1.078497 CACAACCCATGGCTCGCTA 60.078 57.895 6.09 0.00 0.00 4.26
4426 5021 2.360350 CACAACCCATGGCTCGCT 60.360 61.111 6.09 0.00 0.00 4.93
4427 5022 2.672996 ACACAACCCATGGCTCGC 60.673 61.111 6.09 0.00 0.00 5.03
4428 5023 1.302431 TCACACAACCCATGGCTCG 60.302 57.895 6.09 0.00 0.00 5.03
4429 5024 0.537143 TGTCACACAACCCATGGCTC 60.537 55.000 6.09 0.00 0.00 4.70
4430 5025 0.538057 CTGTCACACAACCCATGGCT 60.538 55.000 6.09 0.00 0.00 4.75
4431 5026 1.526575 CCTGTCACACAACCCATGGC 61.527 60.000 6.09 0.00 0.00 4.40
4432 5027 1.526575 GCCTGTCACACAACCCATGG 61.527 60.000 4.14 4.14 0.00 3.66
4433 5028 1.526575 GGCCTGTCACACAACCCATG 61.527 60.000 0.00 0.00 0.00 3.66
4434 5029 1.228552 GGCCTGTCACACAACCCAT 60.229 57.895 0.00 0.00 0.00 4.00
4435 5030 2.194597 GGCCTGTCACACAACCCA 59.805 61.111 0.00 0.00 0.00 4.51
4436 5031 1.454847 TTGGCCTGTCACACAACCC 60.455 57.895 3.32 0.00 0.00 4.11
4437 5032 2.032981 CTTGGCCTGTCACACAACC 58.967 57.895 3.32 0.00 0.00 3.77
4438 5033 1.360192 GCTTGGCCTGTCACACAAC 59.640 57.895 3.32 0.00 0.00 3.32
4439 5034 1.077140 TGCTTGGCCTGTCACACAA 60.077 52.632 3.32 0.00 0.00 3.33
4440 5035 1.823470 GTGCTTGGCCTGTCACACA 60.823 57.895 3.32 0.00 0.00 3.72
4441 5036 2.555547 GGTGCTTGGCCTGTCACAC 61.556 63.158 18.58 12.88 0.00 3.82
4442 5037 2.203337 GGTGCTTGGCCTGTCACA 60.203 61.111 18.58 3.04 0.00 3.58
4443 5038 2.985847 GGGTGCTTGGCCTGTCAC 60.986 66.667 3.32 8.76 0.00 3.67
4444 5039 4.284550 GGGGTGCTTGGCCTGTCA 62.285 66.667 3.32 0.00 0.00 3.58
4445 5040 3.927481 GAGGGGTGCTTGGCCTGTC 62.927 68.421 3.32 0.00 0.00 3.51
4446 5041 3.971702 GAGGGGTGCTTGGCCTGT 61.972 66.667 3.32 0.00 0.00 4.00
4447 5042 4.748144 GGAGGGGTGCTTGGCCTG 62.748 72.222 3.32 0.00 0.00 4.85
4449 5044 4.748144 CAGGAGGGGTGCTTGGCC 62.748 72.222 0.00 0.00 0.00 5.36
4450 5045 4.748144 CCAGGAGGGGTGCTTGGC 62.748 72.222 0.00 0.00 0.00 4.52
4451 5046 3.260100 ACCAGGAGGGGTGCTTGG 61.260 66.667 0.00 0.00 40.44 3.61
4458 5053 1.376466 CAACAGACACCAGGAGGGG 59.624 63.158 0.00 0.00 46.87 4.79
4459 5054 0.474184 AACAACAGACACCAGGAGGG 59.526 55.000 0.00 0.00 44.81 4.30
4460 5055 2.222027 GAAACAACAGACACCAGGAGG 58.778 52.381 0.00 0.00 42.21 4.30
4461 5056 2.614057 GTGAAACAACAGACACCAGGAG 59.386 50.000 0.00 0.00 36.32 3.69
4462 5057 2.639065 GTGAAACAACAGACACCAGGA 58.361 47.619 0.00 0.00 36.32 3.86
4473 5068 1.065109 GGCGGTGTGGTGAAACAAC 59.935 57.895 0.00 0.00 42.67 3.32
4474 5069 1.378646 TGGCGGTGTGGTGAAACAA 60.379 52.632 0.00 0.00 39.98 2.83
4475 5070 1.821759 CTGGCGGTGTGGTGAAACA 60.822 57.895 0.00 0.00 39.98 2.83
4476 5071 2.551912 CCTGGCGGTGTGGTGAAAC 61.552 63.158 0.00 0.00 0.00 2.78
4477 5072 2.203280 CCTGGCGGTGTGGTGAAA 60.203 61.111 0.00 0.00 0.00 2.69
4478 5073 4.263572 CCCTGGCGGTGTGGTGAA 62.264 66.667 0.00 0.00 0.00 3.18
4482 5077 3.976701 GATGTCCCTGGCGGTGTGG 62.977 68.421 0.00 0.00 0.00 4.17
4483 5078 2.436646 GATGTCCCTGGCGGTGTG 60.437 66.667 0.00 0.00 0.00 3.82
4484 5079 1.852157 ATTGATGTCCCTGGCGGTGT 61.852 55.000 0.00 0.00 0.00 4.16
4485 5080 1.077501 ATTGATGTCCCTGGCGGTG 60.078 57.895 0.00 0.00 0.00 4.94
4486 5081 1.077501 CATTGATGTCCCTGGCGGT 60.078 57.895 0.00 0.00 0.00 5.68
4487 5082 1.097547 GTCATTGATGTCCCTGGCGG 61.098 60.000 0.00 0.00 0.00 6.13
4488 5083 1.097547 GGTCATTGATGTCCCTGGCG 61.098 60.000 0.00 0.00 31.09 5.69
4489 5084 0.257039 AGGTCATTGATGTCCCTGGC 59.743 55.000 4.05 0.00 36.79 4.85
4490 5085 1.473965 CGAGGTCATTGATGTCCCTGG 60.474 57.143 8.84 5.41 36.79 4.45
4491 5086 1.208052 ACGAGGTCATTGATGTCCCTG 59.792 52.381 8.84 3.45 36.79 4.45
4492 5087 1.482593 GACGAGGTCATTGATGTCCCT 59.517 52.381 4.05 4.65 36.79 4.20
4493 5088 1.207089 TGACGAGGTCATTGATGTCCC 59.793 52.381 4.05 0.40 37.67 4.46
4494 5089 2.166459 TCTGACGAGGTCATTGATGTCC 59.834 50.000 0.00 0.00 41.94 4.02
4495 5090 3.510388 TCTGACGAGGTCATTGATGTC 57.490 47.619 0.00 0.00 41.94 3.06
4496 5091 3.259374 ACTTCTGACGAGGTCATTGATGT 59.741 43.478 0.00 0.94 41.94 3.06
4497 5092 3.854666 ACTTCTGACGAGGTCATTGATG 58.145 45.455 0.00 0.39 41.94 3.07
4498 5093 4.438880 CGTACTTCTGACGAGGTCATTGAT 60.439 45.833 0.00 0.00 41.94 2.57
4499 5094 3.119955 CGTACTTCTGACGAGGTCATTGA 60.120 47.826 0.00 0.00 41.94 2.57
4500 5095 3.172050 CGTACTTCTGACGAGGTCATTG 58.828 50.000 0.00 0.00 41.94 2.82
4501 5096 2.818432 ACGTACTTCTGACGAGGTCATT 59.182 45.455 1.71 0.00 41.94 2.57
4502 5097 2.161808 CACGTACTTCTGACGAGGTCAT 59.838 50.000 1.71 0.00 41.94 3.06
4503 5098 1.534163 CACGTACTTCTGACGAGGTCA 59.466 52.381 1.71 0.00 42.98 4.02
4504 5099 1.802960 TCACGTACTTCTGACGAGGTC 59.197 52.381 1.71 0.00 42.98 3.85
4505 5100 1.888215 TCACGTACTTCTGACGAGGT 58.112 50.000 1.71 0.00 42.98 3.85
4506 5101 2.418976 TCATCACGTACTTCTGACGAGG 59.581 50.000 1.71 0.00 42.98 4.63
4507 5102 3.741805 TCATCACGTACTTCTGACGAG 57.258 47.619 1.71 0.00 42.98 4.18
4508 5103 3.687698 TGATCATCACGTACTTCTGACGA 59.312 43.478 1.71 0.00 42.98 4.20
4509 5104 4.016113 TGATCATCACGTACTTCTGACG 57.984 45.455 0.00 0.00 45.75 4.35
4510 5105 4.355437 CCTGATCATCACGTACTTCTGAC 58.645 47.826 0.00 0.00 0.00 3.51
4511 5106 3.181486 GCCTGATCATCACGTACTTCTGA 60.181 47.826 0.00 0.00 0.00 3.27
4512 5107 3.119291 GCCTGATCATCACGTACTTCTG 58.881 50.000 0.00 0.00 0.00 3.02
4513 5108 2.101582 GGCCTGATCATCACGTACTTCT 59.898 50.000 0.00 0.00 0.00 2.85
4514 5109 2.474816 GGCCTGATCATCACGTACTTC 58.525 52.381 0.00 0.00 0.00 3.01
4515 5110 1.202417 CGGCCTGATCATCACGTACTT 60.202 52.381 0.00 0.00 0.00 2.24
4516 5111 0.385751 CGGCCTGATCATCACGTACT 59.614 55.000 0.00 0.00 0.00 2.73
4517 5112 0.384309 TCGGCCTGATCATCACGTAC 59.616 55.000 0.00 0.00 0.00 3.67
4518 5113 1.107945 TTCGGCCTGATCATCACGTA 58.892 50.000 0.00 0.00 0.00 3.57
4519 5114 0.460284 GTTCGGCCTGATCATCACGT 60.460 55.000 0.00 0.00 0.00 4.49
4520 5115 1.154205 GGTTCGGCCTGATCATCACG 61.154 60.000 0.00 1.06 0.00 4.35
4521 5116 2.695314 GGTTCGGCCTGATCATCAC 58.305 57.895 0.00 0.00 0.00 3.06
4533 5128 4.820744 CATGGGGCCCAGGTTCGG 62.821 72.222 31.98 11.71 36.75 4.30
4534 5129 4.820744 CCATGGGGCCCAGGTTCG 62.821 72.222 33.20 16.44 36.75 3.95
4535 5130 4.463788 CCCATGGGGCCCAGGTTC 62.464 72.222 33.20 5.98 36.75 3.62
4545 5140 5.634118 AGACATGTTTCATATACCCATGGG 58.366 41.667 30.23 30.23 37.74 4.00
4546 5141 6.772233 TCAAGACATGTTTCATATACCCATGG 59.228 38.462 4.14 4.14 37.74 3.66
4547 5142 7.806409 TCAAGACATGTTTCATATACCCATG 57.194 36.000 0.00 0.00 39.00 3.66
4548 5143 9.425248 AATTCAAGACATGTTTCATATACCCAT 57.575 29.630 0.00 0.00 0.00 4.00
4549 5144 8.821686 AATTCAAGACATGTTTCATATACCCA 57.178 30.769 0.00 0.00 0.00 4.51
4550 5145 9.736023 GAAATTCAAGACATGTTTCATATACCC 57.264 33.333 0.00 0.00 29.12 3.69
4551 5146 9.438291 CGAAATTCAAGACATGTTTCATATACC 57.562 33.333 0.00 0.00 29.12 2.73
4557 5152 9.958234 TTAAATCGAAATTCAAGACATGTTTCA 57.042 25.926 0.00 0.00 29.12 2.69
4560 5155 9.410556 CCTTTAAATCGAAATTCAAGACATGTT 57.589 29.630 0.00 0.00 0.00 2.71
4561 5156 8.792633 TCCTTTAAATCGAAATTCAAGACATGT 58.207 29.630 0.00 0.00 0.00 3.21
4562 5157 9.624697 TTCCTTTAAATCGAAATTCAAGACATG 57.375 29.630 8.86 0.00 0.00 3.21
4595 5190 9.549509 GAACACGCATATAACAGAACAAAAATA 57.450 29.630 0.00 0.00 0.00 1.40
4596 5191 8.296713 AGAACACGCATATAACAGAACAAAAAT 58.703 29.630 0.00 0.00 0.00 1.82
4597 5192 7.644490 AGAACACGCATATAACAGAACAAAAA 58.356 30.769 0.00 0.00 0.00 1.94
4598 5193 7.197071 AGAACACGCATATAACAGAACAAAA 57.803 32.000 0.00 0.00 0.00 2.44
4599 5194 6.128391 GGAGAACACGCATATAACAGAACAAA 60.128 38.462 0.00 0.00 0.00 2.83
4600 5195 5.350365 GGAGAACACGCATATAACAGAACAA 59.650 40.000 0.00 0.00 0.00 2.83
4601 5196 4.868171 GGAGAACACGCATATAACAGAACA 59.132 41.667 0.00 0.00 0.00 3.18
4602 5197 4.868171 TGGAGAACACGCATATAACAGAAC 59.132 41.667 0.00 0.00 0.00 3.01
4603 5198 4.868171 GTGGAGAACACGCATATAACAGAA 59.132 41.667 0.00 0.00 40.85 3.02
4604 5199 4.430007 GTGGAGAACACGCATATAACAGA 58.570 43.478 0.00 0.00 40.85 3.41
4605 5200 4.778842 GTGGAGAACACGCATATAACAG 57.221 45.455 0.00 0.00 40.85 3.16
4617 5212 7.182817 AGCAAAGTACATATAGTGGAGAACA 57.817 36.000 0.00 0.00 0.00 3.18
4618 5213 8.391106 CAAAGCAAAGTACATATAGTGGAGAAC 58.609 37.037 0.00 0.00 0.00 3.01
4619 5214 8.100791 ACAAAGCAAAGTACATATAGTGGAGAA 58.899 33.333 0.00 0.00 0.00 2.87
4620 5215 7.620880 ACAAAGCAAAGTACATATAGTGGAGA 58.379 34.615 0.00 0.00 0.00 3.71
4621 5216 7.849804 ACAAAGCAAAGTACATATAGTGGAG 57.150 36.000 0.00 0.00 0.00 3.86
4622 5217 9.899661 ATAACAAAGCAAAGTACATATAGTGGA 57.100 29.630 0.00 0.00 0.00 4.02
4624 5219 9.849607 CGATAACAAAGCAAAGTACATATAGTG 57.150 33.333 0.00 0.00 0.00 2.74
4625 5220 9.811995 TCGATAACAAAGCAAAGTACATATAGT 57.188 29.630 0.00 0.00 0.00 2.12
4630 5225 9.128107 CAATTTCGATAACAAAGCAAAGTACAT 57.872 29.630 0.00 0.00 0.00 2.29
4631 5226 8.132362 ACAATTTCGATAACAAAGCAAAGTACA 58.868 29.630 0.00 0.00 0.00 2.90
4632 5227 8.502161 ACAATTTCGATAACAAAGCAAAGTAC 57.498 30.769 0.00 0.00 0.00 2.73
4633 5228 8.722342 GACAATTTCGATAACAAAGCAAAGTA 57.278 30.769 0.00 0.00 0.00 2.24
4634 5229 7.623268 GACAATTTCGATAACAAAGCAAAGT 57.377 32.000 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.