Multiple sequence alignment - TraesCS6D01G229500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G229500 chr6D 100.000 2538 0 0 1 2538 321987285 321989822 0.000000e+00 4687.0
1 TraesCS6D01G229500 chr6A 94.376 1049 43 8 801 1837 459507464 459508508 0.000000e+00 1596.0
2 TraesCS6D01G229500 chr6A 90.922 727 36 10 1 705 459506750 459507468 0.000000e+00 950.0
3 TraesCS6D01G229500 chr6A 86.290 248 12 2 2313 2538 459508553 459508800 1.510000e-62 250.0
4 TraesCS6D01G229500 chr6A 95.238 42 1 1 1847 1887 585198849 585198890 5.860000e-07 65.8
5 TraesCS6D01G229500 chr6B 95.489 931 30 5 801 1720 501555011 501554082 0.000000e+00 1476.0
6 TraesCS6D01G229500 chr6B 92.127 724 35 7 1 705 501555727 501555007 0.000000e+00 1002.0
7 TraesCS6D01G229500 chr6B 84.279 229 29 6 462 688 654737442 654737665 1.530000e-52 217.0
8 TraesCS6D01G229500 chr6B 84.615 195 8 2 2366 2538 501553583 501553389 9.330000e-40 174.0
9 TraesCS6D01G229500 chr7D 97.257 401 11 0 1912 2312 418729587 418729987 0.000000e+00 680.0
10 TraesCS6D01G229500 chr7D 96.491 399 13 1 1915 2313 120120682 120121079 0.000000e+00 658.0
11 TraesCS6D01G229500 chr7D 96.482 398 14 0 1915 2312 613857280 613856883 0.000000e+00 658.0
12 TraesCS6D01G229500 chr7D 87.923 207 24 1 464 670 551607074 551607279 2.520000e-60 243.0
13 TraesCS6D01G229500 chr7D 100.000 31 0 0 1856 1886 135361495 135361525 9.810000e-05 58.4
14 TraesCS6D01G229500 chr2D 97.037 405 11 1 1908 2312 34885428 34885025 0.000000e+00 680.0
15 TraesCS6D01G229500 chr2D 96.734 398 13 0 1915 2312 623790295 623789898 0.000000e+00 664.0
16 TraesCS6D01G229500 chr2D 87.727 220 27 0 464 683 620601572 620601791 9.010000e-65 257.0
17 TraesCS6D01G229500 chr2D 84.071 113 12 2 697 808 578875152 578875045 1.240000e-18 104.0
18 TraesCS6D01G229500 chr1D 96.992 399 12 0 1914 2312 216319649 216319251 0.000000e+00 671.0
19 TraesCS6D01G229500 chr1D 96.985 398 12 0 1915 2312 467781936 467782333 0.000000e+00 669.0
20 TraesCS6D01G229500 chr4D 95.694 418 14 4 1895 2312 484764414 484764001 0.000000e+00 669.0
21 TraesCS6D01G229500 chr4D 86.667 210 26 2 464 672 109270157 109270365 5.460000e-57 231.0
22 TraesCS6D01G229500 chr5D 96.482 398 13 1 1915 2312 441124457 441124061 0.000000e+00 656.0
23 TraesCS6D01G229500 chr5D 87.619 105 13 0 698 802 419768027 419768131 3.430000e-24 122.0
24 TraesCS6D01G229500 chr3B 91.220 410 34 2 1903 2312 536427491 536427084 7.930000e-155 556.0
25 TraesCS6D01G229500 chr3B 85.372 417 56 5 1899 2312 537411030 537410616 6.490000e-116 427.0
26 TraesCS6D01G229500 chr2A 87.290 417 46 5 1893 2308 623737135 623737545 1.060000e-128 470.0
27 TraesCS6D01G229500 chr2A 87.111 225 25 3 464 686 737498068 737498290 4.190000e-63 252.0
28 TraesCS6D01G229500 chr2A 89.796 49 3 1 1839 1887 29369224 29369270 7.580000e-06 62.1
29 TraesCS6D01G229500 chr3A 86.978 407 50 3 1904 2309 691513958 691514362 2.980000e-124 455.0
30 TraesCS6D01G229500 chr3A 85.167 418 54 7 1898 2312 743839264 743839676 3.020000e-114 422.0
31 TraesCS6D01G229500 chr3A 97.222 36 1 0 1851 1886 569420702 569420737 7.580000e-06 62.1
32 TraesCS6D01G229500 chr4A 87.097 403 49 3 1911 2312 578271311 578270911 1.070000e-123 453.0
33 TraesCS6D01G229500 chr4A 87.156 109 9 1 700 808 741587387 741587490 4.440000e-23 119.0
34 TraesCS6D01G229500 chr7B 86.064 409 55 2 1904 2312 619080772 619081178 3.000000e-119 438.0
35 TraesCS6D01G229500 chr7B 85.472 413 55 5 1902 2312 434999954 434999545 2.330000e-115 425.0
36 TraesCS6D01G229500 chr3D 88.000 200 24 0 465 664 6464729 6464530 1.170000e-58 237.0
37 TraesCS6D01G229500 chr1B 84.444 225 35 0 464 688 645529280 645529504 3.290000e-54 222.0
38 TraesCS6D01G229500 chr7A 86.667 105 9 1 698 802 60728525 60728624 7.420000e-21 111.0
39 TraesCS6D01G229500 chr5B 86.239 109 8 3 700 807 418373424 418373526 7.420000e-21 111.0
40 TraesCS6D01G229500 chr5B 85.577 104 10 1 699 802 618153261 618153359 1.240000e-18 104.0
41 TraesCS6D01G229500 chr5B 93.182 44 2 1 1844 1886 458149142 458149185 2.110000e-06 63.9
42 TraesCS6D01G229500 chr2B 85.981 107 10 2 697 803 494162217 494162318 2.670000e-20 110.0
43 TraesCS6D01G229500 chr4B 87.629 97 7 1 706 802 296860299 296860390 9.600000e-20 108.0
44 TraesCS6D01G229500 chr4B 84.259 108 12 2 701 808 22527357 22527255 1.610000e-17 100.0
45 TraesCS6D01G229500 chrUn 91.837 49 2 1 1839 1887 331535884 331535930 1.630000e-07 67.6
46 TraesCS6D01G229500 chrUn 91.837 49 2 1 1839 1887 331539311 331539265 1.630000e-07 67.6
47 TraesCS6D01G229500 chrUn 91.837 49 2 1 1839 1887 413738563 413738609 1.630000e-07 67.6
48 TraesCS6D01G229500 chr5A 100.000 31 0 0 1856 1886 624795541 624795511 9.810000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G229500 chr6D 321987285 321989822 2537 False 4687 4687 100.000000 1 2538 1 chr6D.!!$F1 2537
1 TraesCS6D01G229500 chr6A 459506750 459508800 2050 False 932 1596 90.529333 1 2538 3 chr6A.!!$F2 2537
2 TraesCS6D01G229500 chr6B 501553389 501555727 2338 True 884 1476 90.743667 1 2538 3 chr6B.!!$R1 2537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
796 820 1.014352 CGCTTATTTTGGGACGGAGG 58.986 55.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2448 2765 0.03467 AGATGAGTCCCCTGCAAAGC 60.035 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 77 6.624423 TCGAAGGTATAAACTGTACTTGGTC 58.376 40.000 0.00 0.00 0.00 4.02
186 190 4.019792 TGCACATGATCACCAAGTAACT 57.980 40.909 0.00 0.00 0.00 2.24
284 288 1.406887 GGCTCTGCCTCGGTTTTCATA 60.407 52.381 0.73 0.00 46.69 2.15
437 441 9.628500 AGGAGAAGATTAGTTTGTTACTGTTTT 57.372 29.630 0.00 0.00 37.73 2.43
440 444 9.931210 AGAAGATTAGTTTGTTACTGTTTTTCG 57.069 29.630 0.00 0.00 37.73 3.46
441 445 9.712359 GAAGATTAGTTTGTTACTGTTTTTCGT 57.288 29.630 0.00 0.00 37.73 3.85
444 448 8.976715 ATTAGTTTGTTACTGTTTTTCGTACG 57.023 30.769 9.53 9.53 37.73 3.67
445 449 5.798910 AGTTTGTTACTGTTTTTCGTACGG 58.201 37.500 16.52 0.00 35.19 4.02
495 519 8.427012 CACTTCGTTTTTCATGTCATATTTTGG 58.573 33.333 0.00 0.00 0.00 3.28
615 639 9.114952 TGTGTCATATAACTCACTTTTTGTTGA 57.885 29.630 0.00 0.00 0.00 3.18
664 688 5.959618 ACAAATAAGAAGTGGCCTTGTAC 57.040 39.130 3.32 0.00 0.00 2.90
688 712 4.235372 AGGGGATGAAGGGAGTACTAATG 58.765 47.826 0.00 0.00 0.00 1.90
691 715 5.046231 GGGGATGAAGGGAGTACTAATGATC 60.046 48.000 0.00 0.00 0.00 2.92
700 724 8.568617 AGGGAGTACTAATGATCTTGGTTAAT 57.431 34.615 0.00 0.00 0.00 1.40
701 725 9.670442 AGGGAGTACTAATGATCTTGGTTAATA 57.330 33.333 0.00 0.00 0.00 0.98
702 726 9.708092 GGGAGTACTAATGATCTTGGTTAATAC 57.292 37.037 0.00 0.00 0.00 1.89
709 733 9.495572 CTAATGATCTTGGTTAATACTTCCTCC 57.504 37.037 0.00 0.00 0.00 4.30
710 734 5.914033 TGATCTTGGTTAATACTTCCTCCG 58.086 41.667 0.00 0.00 0.00 4.63
711 735 5.424252 TGATCTTGGTTAATACTTCCTCCGT 59.576 40.000 0.00 0.00 0.00 4.69
712 736 5.334724 TCTTGGTTAATACTTCCTCCGTC 57.665 43.478 0.00 0.00 0.00 4.79
713 737 5.021458 TCTTGGTTAATACTTCCTCCGTCT 58.979 41.667 0.00 0.00 0.00 4.18
714 738 5.482878 TCTTGGTTAATACTTCCTCCGTCTT 59.517 40.000 0.00 0.00 0.00 3.01
715 739 6.664816 TCTTGGTTAATACTTCCTCCGTCTTA 59.335 38.462 0.00 0.00 0.00 2.10
716 740 6.855763 TGGTTAATACTTCCTCCGTCTTAA 57.144 37.500 0.00 0.00 0.00 1.85
717 741 7.243604 TGGTTAATACTTCCTCCGTCTTAAA 57.756 36.000 0.00 0.00 0.00 1.52
718 742 7.678837 TGGTTAATACTTCCTCCGTCTTAAAA 58.321 34.615 0.00 0.00 0.00 1.52
719 743 8.323567 TGGTTAATACTTCCTCCGTCTTAAAAT 58.676 33.333 0.00 0.00 0.00 1.82
720 744 9.822185 GGTTAATACTTCCTCCGTCTTAAAATA 57.178 33.333 0.00 0.00 0.00 1.40
724 748 8.943909 ATACTTCCTCCGTCTTAAAATAAGTG 57.056 34.615 0.00 0.00 0.00 3.16
725 749 6.766429 ACTTCCTCCGTCTTAAAATAAGTGT 58.234 36.000 0.00 0.00 0.00 3.55
726 750 6.872547 ACTTCCTCCGTCTTAAAATAAGTGTC 59.127 38.462 0.00 0.00 0.00 3.67
727 751 6.600882 TCCTCCGTCTTAAAATAAGTGTCT 57.399 37.500 0.00 0.00 0.00 3.41
728 752 6.628185 TCCTCCGTCTTAAAATAAGTGTCTC 58.372 40.000 0.00 0.00 0.00 3.36
729 753 6.209986 TCCTCCGTCTTAAAATAAGTGTCTCA 59.790 38.462 0.00 0.00 0.00 3.27
730 754 6.872020 CCTCCGTCTTAAAATAAGTGTCTCAA 59.128 38.462 0.00 0.00 0.00 3.02
731 755 7.148623 CCTCCGTCTTAAAATAAGTGTCTCAAC 60.149 40.741 0.00 0.00 0.00 3.18
732 756 7.439381 TCCGTCTTAAAATAAGTGTCTCAACT 58.561 34.615 0.00 0.00 0.00 3.16
733 757 7.929785 TCCGTCTTAAAATAAGTGTCTCAACTT 59.070 33.333 0.00 0.00 42.89 2.66
734 758 9.199982 CCGTCTTAAAATAAGTGTCTCAACTTA 57.800 33.333 0.00 0.00 44.52 2.24
746 770 9.530633 AAGTGTCTCAACTTAACTTTGTAGTAG 57.469 33.333 0.00 0.00 38.62 2.57
747 771 7.652507 AGTGTCTCAACTTAACTTTGTAGTAGC 59.347 37.037 0.00 0.00 33.17 3.58
748 772 7.652507 GTGTCTCAACTTAACTTTGTAGTAGCT 59.347 37.037 0.00 0.00 33.17 3.32
749 773 8.202137 TGTCTCAACTTAACTTTGTAGTAGCTT 58.798 33.333 0.00 0.00 33.17 3.74
750 774 9.043079 GTCTCAACTTAACTTTGTAGTAGCTTT 57.957 33.333 0.00 0.00 33.17 3.51
780 804 7.492352 AAATTTGTACTAAGTTCAAGACGCT 57.508 32.000 0.00 0.00 0.00 5.07
781 805 7.492352 AATTTGTACTAAGTTCAAGACGCTT 57.508 32.000 0.00 0.00 0.00 4.68
782 806 8.597662 AATTTGTACTAAGTTCAAGACGCTTA 57.402 30.769 0.00 0.00 0.00 3.09
783 807 8.773404 ATTTGTACTAAGTTCAAGACGCTTAT 57.227 30.769 0.00 0.00 0.00 1.73
784 808 8.597662 TTTGTACTAAGTTCAAGACGCTTATT 57.402 30.769 0.00 0.00 0.00 1.40
785 809 8.597662 TTGTACTAAGTTCAAGACGCTTATTT 57.402 30.769 0.00 0.00 0.00 1.40
786 810 8.597662 TGTACTAAGTTCAAGACGCTTATTTT 57.402 30.769 0.00 0.00 0.00 1.82
787 811 8.492748 TGTACTAAGTTCAAGACGCTTATTTTG 58.507 33.333 0.00 0.00 0.00 2.44
788 812 6.899114 ACTAAGTTCAAGACGCTTATTTTGG 58.101 36.000 0.00 0.00 0.00 3.28
789 813 4.766404 AGTTCAAGACGCTTATTTTGGG 57.234 40.909 0.00 0.00 0.00 4.12
790 814 4.394729 AGTTCAAGACGCTTATTTTGGGA 58.605 39.130 0.00 0.00 0.00 4.37
791 815 4.215613 AGTTCAAGACGCTTATTTTGGGAC 59.784 41.667 0.00 0.00 0.00 4.46
792 816 2.739913 TCAAGACGCTTATTTTGGGACG 59.260 45.455 0.00 0.00 0.00 4.79
793 817 1.734163 AGACGCTTATTTTGGGACGG 58.266 50.000 0.00 0.00 0.00 4.79
794 818 1.276989 AGACGCTTATTTTGGGACGGA 59.723 47.619 0.00 0.00 0.00 4.69
795 819 1.664151 GACGCTTATTTTGGGACGGAG 59.336 52.381 0.00 0.00 0.00 4.63
796 820 1.014352 CGCTTATTTTGGGACGGAGG 58.986 55.000 0.00 0.00 0.00 4.30
797 821 1.389555 GCTTATTTTGGGACGGAGGG 58.610 55.000 0.00 0.00 0.00 4.30
798 822 1.064979 GCTTATTTTGGGACGGAGGGA 60.065 52.381 0.00 0.00 0.00 4.20
799 823 2.919228 CTTATTTTGGGACGGAGGGAG 58.081 52.381 0.00 0.00 0.00 4.30
970 1001 8.649973 AAGCTCTCTTACCTATTAATGTTTCG 57.350 34.615 0.00 0.00 0.00 3.46
1110 1141 4.604156 TCACTCTCTACATCACCTCATGT 58.396 43.478 0.00 0.00 40.28 3.21
1145 1176 1.154150 GCGTCAATGGCAAGCACTC 60.154 57.895 0.00 0.00 0.00 3.51
1180 1211 2.108168 CTTCCTCGTCATCCCAGGTTA 58.892 52.381 0.00 0.00 0.00 2.85
1181 1212 2.241281 TCCTCGTCATCCCAGGTTAA 57.759 50.000 0.00 0.00 0.00 2.01
1182 1213 2.759355 TCCTCGTCATCCCAGGTTAAT 58.241 47.619 0.00 0.00 0.00 1.40
1190 1221 3.011144 TCATCCCAGGTTAATTTCAGCCA 59.989 43.478 0.00 0.00 0.00 4.75
1197 1228 5.394115 CCAGGTTAATTTCAGCCATAACACC 60.394 44.000 0.00 0.00 31.46 4.16
1327 1361 2.413453 GAGAAGCTCGTTGATGGTTCAC 59.587 50.000 0.00 0.00 41.46 3.18
1562 1599 6.739112 ACATATATACATCGATCACGGATGG 58.261 40.000 12.06 0.00 40.21 3.51
1666 1707 1.799383 GCTACCAGCAGCTTCAAGC 59.201 57.895 0.00 0.00 41.89 4.01
1689 1730 4.621460 CCGTATCTGTGTTTCCGCTATATG 59.379 45.833 0.00 0.00 0.00 1.78
1696 1737 5.588240 TGTGTTTCCGCTATATGTCTAGTG 58.412 41.667 0.00 0.00 0.00 2.74
1704 1745 7.952671 TCCGCTATATGTCTAGTGATTTTCTT 58.047 34.615 0.00 0.00 32.15 2.52
1713 1754 8.445275 TGTCTAGTGATTTTCTTGCAACTTTA 57.555 30.769 0.00 0.00 0.00 1.85
1730 1775 0.311790 TTAACGACAGAGTTCGCCGT 59.688 50.000 0.00 0.00 43.06 5.68
1738 1783 2.032204 ACAGAGTTCGCCGTCGATATAC 60.032 50.000 0.00 0.00 45.04 1.47
1751 1796 7.009265 CGCCGTCGATATACATTGAGATAATTT 59.991 37.037 0.00 0.00 38.10 1.82
1795 1840 2.021457 GTTGTGGTGTTGTAGGCTTGT 58.979 47.619 0.00 0.00 0.00 3.16
1829 1956 6.657117 AGCGACAGAATATAGATAGCTCAGAA 59.343 38.462 0.00 0.00 0.00 3.02
1867 1994 9.036980 AGAAGTACTACCTGAAACATCTTACAT 57.963 33.333 0.00 0.00 0.00 2.29
1868 1995 9.654663 GAAGTACTACCTGAAACATCTTACATT 57.345 33.333 0.00 0.00 0.00 2.71
1870 1997 9.436957 AGTACTACCTGAAACATCTTACATTTG 57.563 33.333 0.00 0.00 0.00 2.32
1871 1998 9.216117 GTACTACCTGAAACATCTTACATTTGT 57.784 33.333 0.00 0.00 0.00 2.83
1873 2000 9.131791 ACTACCTGAAACATCTTACATTTGTTT 57.868 29.630 0.29 0.29 44.02 2.83
1876 2003 8.908903 ACCTGAAACATCTTACATTTGTTTACA 58.091 29.630 0.70 1.75 42.07 2.41
1877 2004 9.398170 CCTGAAACATCTTACATTTGTTTACAG 57.602 33.333 13.83 13.83 42.07 2.74
1880 2007 9.612620 GAAACATCTTACATTTGTTTACAGAGG 57.387 33.333 0.70 0.00 42.07 3.69
1881 2008 7.687941 ACATCTTACATTTGTTTACAGAGGG 57.312 36.000 0.00 0.00 0.00 4.30
1882 2009 7.458397 ACATCTTACATTTGTTTACAGAGGGA 58.542 34.615 0.00 0.00 0.00 4.20
1883 2010 7.607991 ACATCTTACATTTGTTTACAGAGGGAG 59.392 37.037 0.00 0.00 0.00 4.30
1908 2035 4.124970 GCTCAGATGAGAATGCACATACA 58.875 43.478 13.98 0.00 44.74 2.29
1909 2036 4.025061 GCTCAGATGAGAATGCACATACAC 60.025 45.833 13.98 0.00 44.74 2.90
1910 2037 4.114794 TCAGATGAGAATGCACATACACG 58.885 43.478 0.00 0.00 0.00 4.49
1911 2038 3.867493 CAGATGAGAATGCACATACACGT 59.133 43.478 0.00 0.00 0.00 4.49
1912 2039 4.330894 CAGATGAGAATGCACATACACGTT 59.669 41.667 0.00 0.00 0.00 3.99
1913 2040 4.568359 AGATGAGAATGCACATACACGTTC 59.432 41.667 0.00 0.00 32.98 3.95
1914 2041 3.925379 TGAGAATGCACATACACGTTCT 58.075 40.909 0.00 0.00 43.18 3.01
1915 2042 4.314961 TGAGAATGCACATACACGTTCTT 58.685 39.130 0.00 0.00 41.15 2.52
1916 2043 4.754618 TGAGAATGCACATACACGTTCTTT 59.245 37.500 0.00 0.00 41.15 2.52
1917 2044 5.238432 TGAGAATGCACATACACGTTCTTTT 59.762 36.000 0.00 0.00 41.15 2.27
1918 2045 6.072112 AGAATGCACATACACGTTCTTTTT 57.928 33.333 0.00 0.00 38.66 1.94
1937 2064 3.690475 TTTAGAAAAGGAGGACGACCC 57.310 47.619 0.00 0.00 36.73 4.46
1938 2065 1.565067 TAGAAAAGGAGGACGACCCC 58.435 55.000 0.00 1.75 36.73 4.95
1939 2066 1.199425 AGAAAAGGAGGACGACCCCC 61.199 60.000 0.00 0.00 36.73 5.40
1940 2067 2.517484 GAAAAGGAGGACGACCCCCG 62.517 65.000 0.00 0.00 45.44 5.73
1953 2080 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
1954 2081 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
1955 2082 3.473647 CCGGCCTCTGCATCTGGA 61.474 66.667 0.00 0.00 40.13 3.86
1956 2083 2.202987 CGGCCTCTGCATCTGGAC 60.203 66.667 0.00 0.35 40.13 4.02
1957 2084 2.202987 GGCCTCTGCATCTGGACG 60.203 66.667 0.00 0.00 40.13 4.79
1958 2085 2.725312 GGCCTCTGCATCTGGACGA 61.725 63.158 0.00 0.00 40.13 4.20
1959 2086 1.445095 GCCTCTGCATCTGGACGAT 59.555 57.895 0.00 0.00 37.47 3.73
1967 2094 1.422388 CATCTGGACGATGCATACGG 58.578 55.000 18.34 6.85 42.75 4.02
1968 2095 0.319900 ATCTGGACGATGCATACGGC 60.320 55.000 18.34 16.22 45.13 5.68
1971 2098 4.361253 GACGATGCATACGGCCAT 57.639 55.556 18.34 0.00 43.89 4.40
1972 2099 2.616969 GACGATGCATACGGCCATT 58.383 52.632 18.34 0.00 43.89 3.16
1973 2100 0.944386 GACGATGCATACGGCCATTT 59.056 50.000 18.34 0.00 43.89 2.32
1974 2101 1.333619 GACGATGCATACGGCCATTTT 59.666 47.619 18.34 1.14 43.89 1.82
1975 2102 2.546368 GACGATGCATACGGCCATTTTA 59.454 45.455 18.34 0.00 43.89 1.52
1976 2103 3.146066 ACGATGCATACGGCCATTTTAT 58.854 40.909 18.34 0.00 43.89 1.40
1977 2104 3.568007 ACGATGCATACGGCCATTTTATT 59.432 39.130 18.34 0.00 43.89 1.40
1978 2105 4.757657 ACGATGCATACGGCCATTTTATTA 59.242 37.500 18.34 0.00 43.89 0.98
1979 2106 5.239744 ACGATGCATACGGCCATTTTATTAA 59.760 36.000 18.34 0.00 43.89 1.40
1980 2107 6.072175 ACGATGCATACGGCCATTTTATTAAT 60.072 34.615 18.34 0.00 43.89 1.40
1981 2108 6.806249 CGATGCATACGGCCATTTTATTAATT 59.194 34.615 2.24 0.00 43.89 1.40
1982 2109 7.965655 CGATGCATACGGCCATTTTATTAATTA 59.034 33.333 2.24 0.00 43.89 1.40
1983 2110 9.801873 GATGCATACGGCCATTTTATTAATTAT 57.198 29.630 2.24 0.00 43.89 1.28
1985 2112 9.416794 TGCATACGGCCATTTTATTAATTATTG 57.583 29.630 2.24 0.00 43.89 1.90
1986 2113 9.632807 GCATACGGCCATTTTATTAATTATTGA 57.367 29.630 2.24 0.00 36.11 2.57
1989 2116 8.865590 ACGGCCATTTTATTAATTATTGACAC 57.134 30.769 2.24 0.00 0.00 3.67
1990 2117 8.470805 ACGGCCATTTTATTAATTATTGACACA 58.529 29.630 2.24 0.00 0.00 3.72
1991 2118 9.307121 CGGCCATTTTATTAATTATTGACACAA 57.693 29.630 2.24 0.00 0.00 3.33
2003 2130 8.553459 AATTATTGACACAAGACCTTACAGAG 57.447 34.615 0.00 0.00 0.00 3.35
2004 2131 5.552870 ATTGACACAAGACCTTACAGAGT 57.447 39.130 0.00 0.00 0.00 3.24
2005 2132 4.585955 TGACACAAGACCTTACAGAGTC 57.414 45.455 0.00 0.00 0.00 3.36
2006 2133 3.958147 TGACACAAGACCTTACAGAGTCA 59.042 43.478 0.00 0.00 35.38 3.41
2007 2134 4.588951 TGACACAAGACCTTACAGAGTCAT 59.411 41.667 0.00 0.00 35.38 3.06
2008 2135 5.773176 TGACACAAGACCTTACAGAGTCATA 59.227 40.000 0.00 0.00 35.38 2.15
2009 2136 6.437477 TGACACAAGACCTTACAGAGTCATAT 59.563 38.462 0.00 0.00 35.38 1.78
2010 2137 7.614192 TGACACAAGACCTTACAGAGTCATATA 59.386 37.037 0.00 0.00 35.38 0.86
2011 2138 8.362464 ACACAAGACCTTACAGAGTCATATAA 57.638 34.615 0.00 0.00 35.38 0.98
2012 2139 8.251721 ACACAAGACCTTACAGAGTCATATAAC 58.748 37.037 0.00 0.00 35.38 1.89
2013 2140 8.251026 CACAAGACCTTACAGAGTCATATAACA 58.749 37.037 0.00 0.00 35.38 2.41
2014 2141 8.812972 ACAAGACCTTACAGAGTCATATAACAA 58.187 33.333 0.00 0.00 35.38 2.83
2015 2142 9.823647 CAAGACCTTACAGAGTCATATAACAAT 57.176 33.333 0.00 0.00 35.38 2.71
2019 2146 9.765795 ACCTTACAGAGTCATATAACAATAAGC 57.234 33.333 0.00 0.00 0.00 3.09
2020 2147 9.209175 CCTTACAGAGTCATATAACAATAAGCC 57.791 37.037 0.00 0.00 0.00 4.35
2021 2148 9.988815 CTTACAGAGTCATATAACAATAAGCCT 57.011 33.333 0.00 0.00 0.00 4.58
2026 2153 9.495572 AGAGTCATATAACAATAAGCCTAAAGC 57.504 33.333 0.00 0.00 44.25 3.51
2027 2154 8.622948 AGTCATATAACAATAAGCCTAAAGCC 57.377 34.615 0.00 0.00 45.47 4.35
2028 2155 8.217799 AGTCATATAACAATAAGCCTAAAGCCA 58.782 33.333 0.00 0.00 45.47 4.75
2029 2156 8.290325 GTCATATAACAATAAGCCTAAAGCCAC 58.710 37.037 0.00 0.00 45.47 5.01
2030 2157 7.447238 TCATATAACAATAAGCCTAAAGCCACC 59.553 37.037 0.00 0.00 45.47 4.61
2031 2158 3.449746 ACAATAAGCCTAAAGCCACCA 57.550 42.857 0.00 0.00 45.47 4.17
2032 2159 3.773560 ACAATAAGCCTAAAGCCACCAA 58.226 40.909 0.00 0.00 45.47 3.67
2033 2160 4.156477 ACAATAAGCCTAAAGCCACCAAA 58.844 39.130 0.00 0.00 45.47 3.28
2034 2161 4.021456 ACAATAAGCCTAAAGCCACCAAAC 60.021 41.667 0.00 0.00 45.47 2.93
2035 2162 2.381752 AAGCCTAAAGCCACCAAACT 57.618 45.000 0.00 0.00 45.47 2.66
2036 2163 3.518992 AAGCCTAAAGCCACCAAACTA 57.481 42.857 0.00 0.00 45.47 2.24
2037 2164 3.518992 AGCCTAAAGCCACCAAACTAA 57.481 42.857 0.00 0.00 45.47 2.24
2038 2165 3.421844 AGCCTAAAGCCACCAAACTAAG 58.578 45.455 0.00 0.00 45.47 2.18
2039 2166 2.094700 GCCTAAAGCCACCAAACTAAGC 60.095 50.000 0.00 0.00 34.35 3.09
2040 2167 3.153919 CCTAAAGCCACCAAACTAAGCA 58.846 45.455 0.00 0.00 0.00 3.91
2041 2168 3.572255 CCTAAAGCCACCAAACTAAGCAA 59.428 43.478 0.00 0.00 0.00 3.91
2042 2169 3.452755 AAAGCCACCAAACTAAGCAAC 57.547 42.857 0.00 0.00 0.00 4.17
2043 2170 2.065899 AGCCACCAAACTAAGCAACA 57.934 45.000 0.00 0.00 0.00 3.33
2044 2171 2.597455 AGCCACCAAACTAAGCAACAT 58.403 42.857 0.00 0.00 0.00 2.71
2045 2172 2.558359 AGCCACCAAACTAAGCAACATC 59.442 45.455 0.00 0.00 0.00 3.06
2046 2173 2.558359 GCCACCAAACTAAGCAACATCT 59.442 45.455 0.00 0.00 0.00 2.90
2047 2174 3.612479 GCCACCAAACTAAGCAACATCTG 60.612 47.826 0.00 0.00 0.00 2.90
2048 2175 3.569701 CCACCAAACTAAGCAACATCTGT 59.430 43.478 0.00 0.00 0.00 3.41
2049 2176 4.320494 CCACCAAACTAAGCAACATCTGTC 60.320 45.833 0.00 0.00 0.00 3.51
2050 2177 3.498397 ACCAAACTAAGCAACATCTGTCG 59.502 43.478 0.00 0.00 0.00 4.35
2051 2178 3.482786 CAAACTAAGCAACATCTGTCGC 58.517 45.455 0.00 0.00 0.00 5.19
2052 2179 2.751166 ACTAAGCAACATCTGTCGCT 57.249 45.000 0.00 0.00 35.90 4.93
2053 2180 3.868757 ACTAAGCAACATCTGTCGCTA 57.131 42.857 0.00 0.00 33.45 4.26
2054 2181 4.392921 ACTAAGCAACATCTGTCGCTAT 57.607 40.909 0.00 0.00 33.45 2.97
2055 2182 4.363999 ACTAAGCAACATCTGTCGCTATC 58.636 43.478 0.00 0.00 33.45 2.08
2056 2183 2.231215 AGCAACATCTGTCGCTATCC 57.769 50.000 0.00 0.00 31.60 2.59
2057 2184 1.202580 AGCAACATCTGTCGCTATCCC 60.203 52.381 0.00 0.00 31.60 3.85
2058 2185 1.202580 GCAACATCTGTCGCTATCCCT 60.203 52.381 0.00 0.00 0.00 4.20
2059 2186 2.035961 GCAACATCTGTCGCTATCCCTA 59.964 50.000 0.00 0.00 0.00 3.53
2060 2187 3.306364 GCAACATCTGTCGCTATCCCTAT 60.306 47.826 0.00 0.00 0.00 2.57
2061 2188 4.489810 CAACATCTGTCGCTATCCCTATC 58.510 47.826 0.00 0.00 0.00 2.08
2062 2189 3.093057 ACATCTGTCGCTATCCCTATCC 58.907 50.000 0.00 0.00 0.00 2.59
2063 2190 2.971901 TCTGTCGCTATCCCTATCCA 57.028 50.000 0.00 0.00 0.00 3.41
2064 2191 2.796557 TCTGTCGCTATCCCTATCCAG 58.203 52.381 0.00 0.00 0.00 3.86
2065 2192 2.108425 TCTGTCGCTATCCCTATCCAGT 59.892 50.000 0.00 0.00 0.00 4.00
2066 2193 2.894126 CTGTCGCTATCCCTATCCAGTT 59.106 50.000 0.00 0.00 0.00 3.16
2067 2194 2.628178 TGTCGCTATCCCTATCCAGTTG 59.372 50.000 0.00 0.00 0.00 3.16
2068 2195 2.891580 GTCGCTATCCCTATCCAGTTGA 59.108 50.000 0.00 0.00 0.00 3.18
2069 2196 3.511934 GTCGCTATCCCTATCCAGTTGAT 59.488 47.826 0.00 0.00 37.49 2.57
2070 2197 3.511540 TCGCTATCCCTATCCAGTTGATG 59.488 47.826 0.00 0.00 34.76 3.07
2071 2198 3.259374 CGCTATCCCTATCCAGTTGATGT 59.741 47.826 0.00 0.00 34.76 3.06
2072 2199 4.462834 CGCTATCCCTATCCAGTTGATGTA 59.537 45.833 0.00 0.00 34.76 2.29
2073 2200 5.393569 CGCTATCCCTATCCAGTTGATGTAG 60.394 48.000 0.00 0.00 34.76 2.74
2074 2201 5.105146 GCTATCCCTATCCAGTTGATGTAGG 60.105 48.000 0.00 0.00 34.76 3.18
2075 2202 3.587498 TCCCTATCCAGTTGATGTAGGG 58.413 50.000 9.06 9.06 45.47 3.53
2076 2203 2.639839 CCCTATCCAGTTGATGTAGGGG 59.360 54.545 7.71 0.00 42.40 4.79
2077 2204 2.039084 CCTATCCAGTTGATGTAGGGGC 59.961 54.545 0.00 0.00 34.76 5.80
2078 2205 0.469917 ATCCAGTTGATGTAGGGGCG 59.530 55.000 0.00 0.00 30.54 6.13
2079 2206 1.819632 CCAGTTGATGTAGGGGCGC 60.820 63.158 0.00 0.00 0.00 6.53
2080 2207 1.221840 CAGTTGATGTAGGGGCGCT 59.778 57.895 7.64 9.68 0.00 5.92
2081 2208 1.091771 CAGTTGATGTAGGGGCGCTG 61.092 60.000 15.11 0.00 0.00 5.18
2082 2209 1.220749 GTTGATGTAGGGGCGCTGA 59.779 57.895 15.11 0.63 0.00 4.26
2083 2210 0.392461 GTTGATGTAGGGGCGCTGAA 60.392 55.000 15.11 2.23 0.00 3.02
2084 2211 0.326595 TTGATGTAGGGGCGCTGAAA 59.673 50.000 15.11 0.00 0.00 2.69
2085 2212 0.107703 TGATGTAGGGGCGCTGAAAG 60.108 55.000 15.11 0.00 0.00 2.62
2086 2213 0.107654 GATGTAGGGGCGCTGAAAGT 60.108 55.000 15.11 0.00 35.30 2.66
2087 2214 0.107654 ATGTAGGGGCGCTGAAAGTC 60.108 55.000 15.11 0.00 35.30 3.01
2088 2215 1.192146 TGTAGGGGCGCTGAAAGTCT 61.192 55.000 15.11 0.00 35.30 3.24
2089 2216 0.036294 GTAGGGGCGCTGAAAGTCTT 60.036 55.000 15.11 0.00 35.30 3.01
2090 2217 0.036388 TAGGGGCGCTGAAAGTCTTG 60.036 55.000 15.11 0.00 35.30 3.02
2091 2218 2.335712 GGGGCGCTGAAAGTCTTGG 61.336 63.158 7.64 0.00 35.30 3.61
2092 2219 2.563427 GGCGCTGAAAGTCTTGGC 59.437 61.111 7.64 0.00 35.30 4.52
2093 2220 2.563427 GCGCTGAAAGTCTTGGCC 59.437 61.111 0.00 0.00 35.30 5.36
2094 2221 1.968540 GCGCTGAAAGTCTTGGCCT 60.969 57.895 3.32 0.00 35.30 5.19
2095 2222 0.673644 GCGCTGAAAGTCTTGGCCTA 60.674 55.000 3.32 0.00 35.30 3.93
2096 2223 1.808411 CGCTGAAAGTCTTGGCCTAA 58.192 50.000 3.32 0.00 35.30 2.69
2097 2224 2.359900 CGCTGAAAGTCTTGGCCTAAT 58.640 47.619 3.32 0.00 35.30 1.73
2098 2225 3.531538 CGCTGAAAGTCTTGGCCTAATA 58.468 45.455 3.32 0.00 35.30 0.98
2099 2226 3.309954 CGCTGAAAGTCTTGGCCTAATAC 59.690 47.826 3.32 0.00 35.30 1.89
2100 2227 3.628032 GCTGAAAGTCTTGGCCTAATACC 59.372 47.826 3.32 0.00 35.30 2.73
2101 2228 4.843728 CTGAAAGTCTTGGCCTAATACCA 58.156 43.478 3.32 0.00 34.65 3.25
2102 2229 5.249780 TGAAAGTCTTGGCCTAATACCAA 57.750 39.130 3.32 0.00 44.86 3.67
2103 2230 5.636123 TGAAAGTCTTGGCCTAATACCAAA 58.364 37.500 3.32 0.00 46.24 3.28
2104 2231 5.475564 TGAAAGTCTTGGCCTAATACCAAAC 59.524 40.000 3.32 0.00 46.24 2.93
2105 2232 4.650972 AGTCTTGGCCTAATACCAAACA 57.349 40.909 3.32 0.00 46.24 2.83
2106 2233 4.589908 AGTCTTGGCCTAATACCAAACAG 58.410 43.478 3.32 0.00 46.24 3.16
2107 2234 4.288626 AGTCTTGGCCTAATACCAAACAGA 59.711 41.667 3.32 0.00 46.24 3.41
2108 2235 4.395231 GTCTTGGCCTAATACCAAACAGAC 59.605 45.833 3.32 0.00 46.24 3.51
2109 2236 3.359695 TGGCCTAATACCAAACAGACC 57.640 47.619 3.32 0.00 33.12 3.85
2110 2237 2.916934 TGGCCTAATACCAAACAGACCT 59.083 45.455 3.32 0.00 33.12 3.85
2111 2238 3.054655 TGGCCTAATACCAAACAGACCTC 60.055 47.826 3.32 0.00 33.12 3.85
2112 2239 3.195661 GCCTAATACCAAACAGACCTCG 58.804 50.000 0.00 0.00 0.00 4.63
2113 2240 3.195661 CCTAATACCAAACAGACCTCGC 58.804 50.000 0.00 0.00 0.00 5.03
2114 2241 2.851263 AATACCAAACAGACCTCGCA 57.149 45.000 0.00 0.00 0.00 5.10
2115 2242 2.386661 ATACCAAACAGACCTCGCAG 57.613 50.000 0.00 0.00 0.00 5.18
2116 2243 0.320421 TACCAAACAGACCTCGCAGC 60.320 55.000 0.00 0.00 0.00 5.25
2117 2244 2.328099 CCAAACAGACCTCGCAGCC 61.328 63.158 0.00 0.00 0.00 4.85
2118 2245 1.597854 CAAACAGACCTCGCAGCCA 60.598 57.895 0.00 0.00 0.00 4.75
2119 2246 1.148273 AAACAGACCTCGCAGCCAA 59.852 52.632 0.00 0.00 0.00 4.52
2120 2247 0.465460 AAACAGACCTCGCAGCCAAA 60.465 50.000 0.00 0.00 0.00 3.28
2121 2248 1.166531 AACAGACCTCGCAGCCAAAC 61.167 55.000 0.00 0.00 0.00 2.93
2122 2249 2.032681 AGACCTCGCAGCCAAACC 59.967 61.111 0.00 0.00 0.00 3.27
2123 2250 2.032681 GACCTCGCAGCCAAACCT 59.967 61.111 0.00 0.00 0.00 3.50
2124 2251 1.192146 AGACCTCGCAGCCAAACCTA 61.192 55.000 0.00 0.00 0.00 3.08
2125 2252 0.321298 GACCTCGCAGCCAAACCTAA 60.321 55.000 0.00 0.00 0.00 2.69
2126 2253 0.605589 ACCTCGCAGCCAAACCTAAC 60.606 55.000 0.00 0.00 0.00 2.34
2127 2254 0.605319 CCTCGCAGCCAAACCTAACA 60.605 55.000 0.00 0.00 0.00 2.41
2128 2255 1.453155 CTCGCAGCCAAACCTAACAT 58.547 50.000 0.00 0.00 0.00 2.71
2129 2256 1.398390 CTCGCAGCCAAACCTAACATC 59.602 52.381 0.00 0.00 0.00 3.06
2130 2257 1.003118 TCGCAGCCAAACCTAACATCT 59.997 47.619 0.00 0.00 0.00 2.90
2131 2258 2.235155 TCGCAGCCAAACCTAACATCTA 59.765 45.455 0.00 0.00 0.00 1.98
2132 2259 3.006940 CGCAGCCAAACCTAACATCTAA 58.993 45.455 0.00 0.00 0.00 2.10
2133 2260 3.063997 CGCAGCCAAACCTAACATCTAAG 59.936 47.826 0.00 0.00 0.00 2.18
2134 2261 4.261801 GCAGCCAAACCTAACATCTAAGA 58.738 43.478 0.00 0.00 0.00 2.10
2135 2262 4.095036 GCAGCCAAACCTAACATCTAAGAC 59.905 45.833 0.00 0.00 0.00 3.01
2136 2263 5.491982 CAGCCAAACCTAACATCTAAGACT 58.508 41.667 0.00 0.00 0.00 3.24
2137 2264 5.940470 CAGCCAAACCTAACATCTAAGACTT 59.060 40.000 0.00 0.00 0.00 3.01
2138 2265 5.940470 AGCCAAACCTAACATCTAAGACTTG 59.060 40.000 0.00 0.00 0.00 3.16
2139 2266 5.938125 GCCAAACCTAACATCTAAGACTTGA 59.062 40.000 0.00 0.00 0.00 3.02
2140 2267 6.092807 GCCAAACCTAACATCTAAGACTTGAG 59.907 42.308 0.00 0.00 0.00 3.02
2141 2268 6.595716 CCAAACCTAACATCTAAGACTTGAGG 59.404 42.308 0.00 0.00 0.00 3.86
2142 2269 6.936968 AACCTAACATCTAAGACTTGAGGT 57.063 37.500 0.00 0.00 36.34 3.85
2143 2270 6.532988 ACCTAACATCTAAGACTTGAGGTC 57.467 41.667 0.00 0.00 44.80 3.85
2156 2283 1.924731 TGAGGTCTCAATCAGGACGT 58.075 50.000 0.00 0.00 36.53 4.34
2157 2284 1.819288 TGAGGTCTCAATCAGGACGTC 59.181 52.381 7.13 7.13 43.38 4.34
2158 2285 2.096248 GAGGTCTCAATCAGGACGTCT 58.904 52.381 16.46 0.00 41.33 4.18
2159 2286 1.821753 AGGTCTCAATCAGGACGTCTG 59.178 52.381 16.46 11.66 44.68 3.51
2160 2287 1.634702 GTCTCAATCAGGACGTCTGC 58.365 55.000 16.46 0.00 43.06 4.26
2161 2288 0.532573 TCTCAATCAGGACGTCTGCC 59.467 55.000 16.46 0.00 43.06 4.85
2162 2289 0.803768 CTCAATCAGGACGTCTGCCG 60.804 60.000 16.46 1.70 43.06 5.69
2163 2290 1.811266 CAATCAGGACGTCTGCCGG 60.811 63.158 16.46 0.00 43.06 6.13
2164 2291 3.019003 AATCAGGACGTCTGCCGGG 62.019 63.158 16.46 0.00 43.06 5.73
2165 2292 4.988716 TCAGGACGTCTGCCGGGT 62.989 66.667 16.46 0.00 43.06 5.28
2166 2293 2.849096 ATCAGGACGTCTGCCGGGTA 62.849 60.000 16.46 0.00 43.06 3.69
2167 2294 2.043248 AGGACGTCTGCCGGGTAT 60.043 61.111 16.46 0.00 42.24 2.73
2168 2295 2.106332 GGACGTCTGCCGGGTATG 59.894 66.667 16.46 0.00 42.24 2.39
2169 2296 2.106332 GACGTCTGCCGGGTATGG 59.894 66.667 8.70 0.00 42.24 2.74
2170 2297 3.441011 GACGTCTGCCGGGTATGGG 62.441 68.421 8.70 0.00 42.24 4.00
2186 2313 2.439156 GGCACCCATCAGTCTGGC 60.439 66.667 0.00 0.00 34.77 4.85
2187 2314 2.821366 GCACCCATCAGTCTGGCG 60.821 66.667 0.00 0.00 34.77 5.69
2188 2315 2.665000 CACCCATCAGTCTGGCGT 59.335 61.111 0.00 0.00 34.77 5.68
2189 2316 1.742880 CACCCATCAGTCTGGCGTG 60.743 63.158 0.00 0.00 34.77 5.34
2190 2317 2.821366 CCCATCAGTCTGGCGTGC 60.821 66.667 0.00 0.00 34.77 5.34
2191 2318 2.267006 CCATCAGTCTGGCGTGCT 59.733 61.111 0.00 0.00 0.00 4.40
2192 2319 1.376424 CCATCAGTCTGGCGTGCTT 60.376 57.895 0.00 0.00 0.00 3.91
2193 2320 1.364626 CCATCAGTCTGGCGTGCTTC 61.365 60.000 0.00 0.00 0.00 3.86
2194 2321 0.390866 CATCAGTCTGGCGTGCTTCT 60.391 55.000 0.00 0.00 0.00 2.85
2195 2322 0.108424 ATCAGTCTGGCGTGCTTCTC 60.108 55.000 0.00 0.00 0.00 2.87
2196 2323 1.005748 CAGTCTGGCGTGCTTCTCA 60.006 57.895 0.00 0.00 0.00 3.27
2197 2324 0.601046 CAGTCTGGCGTGCTTCTCAA 60.601 55.000 0.00 0.00 0.00 3.02
2198 2325 0.601311 AGTCTGGCGTGCTTCTCAAC 60.601 55.000 0.00 0.00 0.00 3.18
2199 2326 1.301716 TCTGGCGTGCTTCTCAACC 60.302 57.895 0.00 0.00 0.00 3.77
2200 2327 1.597854 CTGGCGTGCTTCTCAACCA 60.598 57.895 0.00 0.00 33.55 3.67
2201 2328 1.572085 CTGGCGTGCTTCTCAACCAG 61.572 60.000 0.00 0.00 41.83 4.00
2202 2329 2.328099 GGCGTGCTTCTCAACCAGG 61.328 63.158 0.00 0.00 0.00 4.45
2203 2330 1.301716 GCGTGCTTCTCAACCAGGA 60.302 57.895 0.00 0.00 0.00 3.86
2204 2331 1.569479 GCGTGCTTCTCAACCAGGAC 61.569 60.000 0.00 0.00 0.00 3.85
2205 2332 1.284982 CGTGCTTCTCAACCAGGACG 61.285 60.000 0.00 0.00 46.31 4.79
2206 2333 1.301716 TGCTTCTCAACCAGGACGC 60.302 57.895 0.00 0.00 0.00 5.19
2207 2334 2.035442 GCTTCTCAACCAGGACGCC 61.035 63.158 0.00 0.00 0.00 5.68
2208 2335 1.674057 CTTCTCAACCAGGACGCCT 59.326 57.895 0.00 0.00 0.00 5.52
2218 2345 4.910585 GGACGCCTGCCGGGTATG 62.911 72.222 2.18 0.00 42.52 2.39
2219 2346 3.845259 GACGCCTGCCGGGTATGA 61.845 66.667 2.18 0.00 42.52 2.15
2220 2347 3.792053 GACGCCTGCCGGGTATGAG 62.792 68.421 2.18 0.00 42.52 2.90
2221 2348 4.609018 CGCCTGCCGGGTATGAGG 62.609 72.222 2.18 0.00 37.43 3.86
2244 2371 3.225798 GCAGCCACTTGCCACCAA 61.226 61.111 0.00 0.00 42.71 3.67
2245 2372 2.576832 GCAGCCACTTGCCACCAAT 61.577 57.895 0.00 0.00 42.71 3.16
2246 2373 1.250154 GCAGCCACTTGCCACCAATA 61.250 55.000 0.00 0.00 42.71 1.90
2247 2374 0.527565 CAGCCACTTGCCACCAATAC 59.472 55.000 0.00 0.00 42.71 1.89
2248 2375 0.112218 AGCCACTTGCCACCAATACA 59.888 50.000 0.00 0.00 42.71 2.29
2249 2376 1.185315 GCCACTTGCCACCAATACAT 58.815 50.000 0.00 0.00 0.00 2.29
2250 2377 1.134946 GCCACTTGCCACCAATACATC 59.865 52.381 0.00 0.00 0.00 3.06
2251 2378 2.726821 CCACTTGCCACCAATACATCT 58.273 47.619 0.00 0.00 0.00 2.90
2252 2379 3.091545 CCACTTGCCACCAATACATCTT 58.908 45.455 0.00 0.00 0.00 2.40
2253 2380 3.129287 CCACTTGCCACCAATACATCTTC 59.871 47.826 0.00 0.00 0.00 2.87
2254 2381 3.758023 CACTTGCCACCAATACATCTTCA 59.242 43.478 0.00 0.00 0.00 3.02
2255 2382 4.012374 ACTTGCCACCAATACATCTTCAG 58.988 43.478 0.00 0.00 0.00 3.02
2256 2383 3.998913 TGCCACCAATACATCTTCAGA 57.001 42.857 0.00 0.00 0.00 3.27
2257 2384 4.299586 TGCCACCAATACATCTTCAGAA 57.700 40.909 0.00 0.00 0.00 3.02
2258 2385 4.009675 TGCCACCAATACATCTTCAGAAC 58.990 43.478 0.00 0.00 0.00 3.01
2259 2386 4.263462 TGCCACCAATACATCTTCAGAACT 60.263 41.667 0.00 0.00 0.00 3.01
2260 2387 4.095483 GCCACCAATACATCTTCAGAACTG 59.905 45.833 0.00 0.00 0.00 3.16
2261 2388 5.248640 CCACCAATACATCTTCAGAACTGT 58.751 41.667 1.73 0.48 0.00 3.55
2262 2389 6.406370 CCACCAATACATCTTCAGAACTGTA 58.594 40.000 1.73 4.15 0.00 2.74
2263 2390 6.313905 CCACCAATACATCTTCAGAACTGTAC 59.686 42.308 1.73 0.00 0.00 2.90
2264 2391 7.099764 CACCAATACATCTTCAGAACTGTACT 58.900 38.462 1.73 0.00 0.00 2.73
2265 2392 7.063898 CACCAATACATCTTCAGAACTGTACTG 59.936 40.741 0.00 0.00 36.80 2.74
2266 2393 6.036517 CCAATACATCTTCAGAACTGTACTGC 59.963 42.308 0.00 0.00 35.61 4.40
2267 2394 4.881019 ACATCTTCAGAACTGTACTGCT 57.119 40.909 0.00 0.00 35.61 4.24
2268 2395 4.564041 ACATCTTCAGAACTGTACTGCTG 58.436 43.478 0.00 0.88 35.61 4.41
2269 2396 3.032017 TCTTCAGAACTGTACTGCTGC 57.968 47.619 0.00 0.00 35.61 5.25
2270 2397 2.365293 TCTTCAGAACTGTACTGCTGCA 59.635 45.455 0.88 0.88 35.61 4.41
2271 2398 3.007290 TCTTCAGAACTGTACTGCTGCAT 59.993 43.478 1.31 0.00 35.61 3.96
2272 2399 2.964740 TCAGAACTGTACTGCTGCATC 58.035 47.619 1.31 0.00 35.61 3.91
2273 2400 2.299867 TCAGAACTGTACTGCTGCATCA 59.700 45.455 1.31 2.56 35.61 3.07
2274 2401 3.069289 CAGAACTGTACTGCTGCATCAA 58.931 45.455 1.31 0.00 0.00 2.57
2275 2402 3.070018 AGAACTGTACTGCTGCATCAAC 58.930 45.455 1.31 2.47 0.00 3.18
2276 2403 1.813513 ACTGTACTGCTGCATCAACC 58.186 50.000 1.31 0.00 0.00 3.77
2277 2404 1.349026 ACTGTACTGCTGCATCAACCT 59.651 47.619 1.31 0.00 0.00 3.50
2278 2405 2.224621 ACTGTACTGCTGCATCAACCTT 60.225 45.455 1.31 0.00 0.00 3.50
2279 2406 2.153645 TGTACTGCTGCATCAACCTTG 58.846 47.619 1.31 0.00 0.00 3.61
2280 2407 1.135575 GTACTGCTGCATCAACCTTGC 60.136 52.381 1.31 0.00 40.55 4.01
2281 2408 1.214589 CTGCTGCATCAACCTTGCC 59.785 57.895 1.31 0.00 39.39 4.52
2282 2409 2.221906 CTGCTGCATCAACCTTGCCC 62.222 60.000 1.31 0.00 39.39 5.36
2283 2410 2.277591 GCTGCATCAACCTTGCCCA 61.278 57.895 0.00 0.00 39.39 5.36
2284 2411 1.888018 CTGCATCAACCTTGCCCAG 59.112 57.895 0.00 0.00 39.39 4.45
2285 2412 0.896940 CTGCATCAACCTTGCCCAGT 60.897 55.000 0.00 0.00 39.39 4.00
2286 2413 0.895100 TGCATCAACCTTGCCCAGTC 60.895 55.000 0.00 0.00 39.39 3.51
2287 2414 0.610232 GCATCAACCTTGCCCAGTCT 60.610 55.000 0.00 0.00 33.95 3.24
2288 2415 1.340017 GCATCAACCTTGCCCAGTCTA 60.340 52.381 0.00 0.00 33.95 2.59
2289 2416 2.879756 GCATCAACCTTGCCCAGTCTAA 60.880 50.000 0.00 0.00 33.95 2.10
2290 2417 2.561478 TCAACCTTGCCCAGTCTAAC 57.439 50.000 0.00 0.00 0.00 2.34
2291 2418 2.054799 TCAACCTTGCCCAGTCTAACT 58.945 47.619 0.00 0.00 0.00 2.24
2292 2419 2.154462 CAACCTTGCCCAGTCTAACTG 58.846 52.381 0.01 0.01 45.53 3.16
2293 2420 0.036875 ACCTTGCCCAGTCTAACTGC 59.963 55.000 1.49 0.00 44.63 4.40
2294 2421 0.678048 CCTTGCCCAGTCTAACTGCC 60.678 60.000 1.49 0.00 44.63 4.85
2295 2422 1.003839 TTGCCCAGTCTAACTGCCG 60.004 57.895 1.49 0.00 44.63 5.69
2296 2423 2.820037 GCCCAGTCTAACTGCCGC 60.820 66.667 1.49 2.27 44.63 6.53
2297 2424 2.125106 CCCAGTCTAACTGCCGCC 60.125 66.667 1.49 0.00 44.63 6.13
2298 2425 2.509336 CCAGTCTAACTGCCGCCG 60.509 66.667 1.49 0.00 44.63 6.46
2299 2426 2.571757 CAGTCTAACTGCCGCCGA 59.428 61.111 0.00 0.00 39.62 5.54
2300 2427 1.141881 CAGTCTAACTGCCGCCGAT 59.858 57.895 0.00 0.00 39.62 4.18
2301 2428 1.141881 AGTCTAACTGCCGCCGATG 59.858 57.895 0.00 0.00 0.00 3.84
2302 2429 2.202878 TCTAACTGCCGCCGATGC 60.203 61.111 0.00 0.00 0.00 3.91
2303 2430 3.272334 CTAACTGCCGCCGATGCC 61.272 66.667 0.00 0.00 0.00 4.40
2304 2431 4.089239 TAACTGCCGCCGATGCCA 62.089 61.111 0.00 0.00 0.00 4.92
2323 2450 1.068402 CACCACGACATACACGTACCA 60.068 52.381 0.00 0.00 42.07 3.25
2345 2472 7.315890 ACCAATTCTGCACTTAATTAGCTTTC 58.684 34.615 0.00 0.00 0.00 2.62
2357 2484 7.780271 ACTTAATTAGCTTTCTTATTCCCTGGG 59.220 37.037 6.33 6.33 0.00 4.45
2372 2689 7.682787 ATTCCCTGGGTCATATATATCTCAC 57.317 40.000 13.56 0.00 0.00 3.51
2373 2690 5.201243 TCCCTGGGTCATATATATCTCACG 58.799 45.833 13.56 0.00 0.00 4.35
2413 2730 0.608035 TTGCCCTTTAGTCGCCTTGG 60.608 55.000 0.00 0.00 0.00 3.61
2428 2745 2.586425 CCTTGGTTGACCATTCACAGT 58.414 47.619 3.28 0.00 46.97 3.55
2447 2764 8.306313 TCACAGTAATTCATAGTCAGTGGTAT 57.694 34.615 0.00 0.00 0.00 2.73
2448 2765 8.197439 TCACAGTAATTCATAGTCAGTGGTATG 58.803 37.037 6.95 6.95 0.00 2.39
2449 2766 6.986817 ACAGTAATTCATAGTCAGTGGTATGC 59.013 38.462 8.00 0.00 0.00 3.14
2499 2838 2.019951 CGACCACCGTGTACACAGC 61.020 63.158 24.98 6.72 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 123 4.778534 TCTGCCACTGTTGTAGTACTAC 57.221 45.455 23.58 23.58 37.60 2.73
120 124 4.095932 CGATCTGCCACTGTTGTAGTACTA 59.904 45.833 0.00 0.00 37.60 1.82
121 125 3.119459 CGATCTGCCACTGTTGTAGTACT 60.119 47.826 0.00 0.00 37.60 2.73
186 190 3.276031 TAGGCAGCCCAACCCCCTA 62.276 63.158 8.22 0.00 0.00 3.53
284 288 0.258774 GGCATGATGGGGTACTGGTT 59.741 55.000 0.00 0.00 0.00 3.67
435 439 7.814107 AGTACTGTAATTCAATCCGTACGAAAA 59.186 33.333 18.76 1.76 32.70 2.29
436 440 7.274033 CAGTACTGTAATTCAATCCGTACGAAA 59.726 37.037 18.76 4.64 32.70 3.46
437 441 6.748658 CAGTACTGTAATTCAATCCGTACGAA 59.251 38.462 18.76 0.00 32.70 3.85
438 442 6.260377 CAGTACTGTAATTCAATCCGTACGA 58.740 40.000 18.76 3.10 32.70 3.43
439 443 5.051907 GCAGTACTGTAATTCAATCCGTACG 60.052 44.000 23.44 8.69 32.70 3.67
440 444 5.808540 TGCAGTACTGTAATTCAATCCGTAC 59.191 40.000 23.44 2.27 0.00 3.67
441 445 5.968254 TGCAGTACTGTAATTCAATCCGTA 58.032 37.500 23.44 0.00 0.00 4.02
444 448 5.449177 GCCTTGCAGTACTGTAATTCAATCC 60.449 44.000 24.06 9.56 34.80 3.01
445 449 5.449177 GGCCTTGCAGTACTGTAATTCAATC 60.449 44.000 24.06 12.79 34.80 2.67
495 519 2.227865 TCTGCGGACCAAAATTACAAGC 59.772 45.455 0.00 0.00 0.00 4.01
664 688 2.482494 AGTACTCCCTTCATCCCCTTG 58.518 52.381 0.00 0.00 0.00 3.61
670 694 7.158021 CCAAGATCATTAGTACTCCCTTCATC 58.842 42.308 0.00 0.00 0.00 2.92
688 712 5.915175 ACGGAGGAAGTATTAACCAAGATC 58.085 41.667 0.00 0.00 0.00 2.75
691 715 5.340439 AGACGGAGGAAGTATTAACCAAG 57.660 43.478 0.00 0.00 0.00 3.61
700 724 7.899973 ACACTTATTTTAAGACGGAGGAAGTA 58.100 34.615 1.47 0.00 0.00 2.24
701 725 6.766429 ACACTTATTTTAAGACGGAGGAAGT 58.234 36.000 1.47 0.00 0.00 3.01
702 726 7.097834 AGACACTTATTTTAAGACGGAGGAAG 58.902 38.462 1.47 0.00 0.00 3.46
703 727 7.001099 AGACACTTATTTTAAGACGGAGGAA 57.999 36.000 1.47 0.00 0.00 3.36
704 728 6.209986 TGAGACACTTATTTTAAGACGGAGGA 59.790 38.462 1.47 0.00 0.00 3.71
705 729 6.395629 TGAGACACTTATTTTAAGACGGAGG 58.604 40.000 1.47 0.00 0.00 4.30
706 730 7.599245 AGTTGAGACACTTATTTTAAGACGGAG 59.401 37.037 1.47 0.00 0.00 4.63
707 731 7.439381 AGTTGAGACACTTATTTTAAGACGGA 58.561 34.615 1.47 0.00 0.00 4.69
708 732 7.653767 AGTTGAGACACTTATTTTAAGACGG 57.346 36.000 1.47 0.00 0.00 4.79
720 744 9.530633 CTACTACAAAGTTAAGTTGAGACACTT 57.469 33.333 0.00 0.00 37.66 3.16
721 745 7.652507 GCTACTACAAAGTTAAGTTGAGACACT 59.347 37.037 0.00 0.00 37.15 3.55
722 746 7.652507 AGCTACTACAAAGTTAAGTTGAGACAC 59.347 37.037 0.00 0.00 37.15 3.67
723 747 7.723324 AGCTACTACAAAGTTAAGTTGAGACA 58.277 34.615 0.00 0.00 37.15 3.41
724 748 8.590719 AAGCTACTACAAAGTTAAGTTGAGAC 57.409 34.615 0.00 0.00 37.15 3.36
754 778 9.216117 AGCGTCTTGAACTTAGTACAAATTTAT 57.784 29.630 0.00 0.00 0.00 1.40
755 779 8.597662 AGCGTCTTGAACTTAGTACAAATTTA 57.402 30.769 0.00 0.00 0.00 1.40
756 780 7.492352 AGCGTCTTGAACTTAGTACAAATTT 57.508 32.000 0.00 0.00 0.00 1.82
757 781 7.492352 AAGCGTCTTGAACTTAGTACAAATT 57.508 32.000 0.00 0.00 0.00 1.82
758 782 8.773404 ATAAGCGTCTTGAACTTAGTACAAAT 57.227 30.769 0.00 0.00 29.96 2.32
759 783 8.597662 AATAAGCGTCTTGAACTTAGTACAAA 57.402 30.769 0.00 0.00 29.96 2.83
760 784 8.597662 AAATAAGCGTCTTGAACTTAGTACAA 57.402 30.769 0.00 0.00 29.96 2.41
761 785 8.492748 CAAAATAAGCGTCTTGAACTTAGTACA 58.507 33.333 0.00 0.00 29.96 2.90
762 786 7.955864 CCAAAATAAGCGTCTTGAACTTAGTAC 59.044 37.037 2.86 0.00 29.96 2.73
763 787 7.118680 CCCAAAATAAGCGTCTTGAACTTAGTA 59.881 37.037 2.86 0.00 29.96 1.82
764 788 6.072673 CCCAAAATAAGCGTCTTGAACTTAGT 60.073 38.462 2.86 0.00 29.96 2.24
765 789 6.148811 TCCCAAAATAAGCGTCTTGAACTTAG 59.851 38.462 2.86 0.00 29.96 2.18
766 790 5.998981 TCCCAAAATAAGCGTCTTGAACTTA 59.001 36.000 2.86 0.00 0.00 2.24
767 791 4.825085 TCCCAAAATAAGCGTCTTGAACTT 59.175 37.500 2.86 0.00 0.00 2.66
768 792 4.215613 GTCCCAAAATAAGCGTCTTGAACT 59.784 41.667 2.86 0.00 0.00 3.01
769 793 4.473199 GTCCCAAAATAAGCGTCTTGAAC 58.527 43.478 2.86 0.00 0.00 3.18
770 794 3.187637 CGTCCCAAAATAAGCGTCTTGAA 59.812 43.478 2.86 0.00 0.00 2.69
771 795 2.739913 CGTCCCAAAATAAGCGTCTTGA 59.260 45.455 2.86 0.00 0.00 3.02
772 796 2.159572 CCGTCCCAAAATAAGCGTCTTG 60.160 50.000 2.86 0.00 0.00 3.02
773 797 2.081462 CCGTCCCAAAATAAGCGTCTT 58.919 47.619 0.00 0.00 0.00 3.01
774 798 1.276989 TCCGTCCCAAAATAAGCGTCT 59.723 47.619 0.00 0.00 0.00 4.18
775 799 1.664151 CTCCGTCCCAAAATAAGCGTC 59.336 52.381 0.00 0.00 0.00 5.19
776 800 1.677820 CCTCCGTCCCAAAATAAGCGT 60.678 52.381 0.00 0.00 0.00 5.07
777 801 1.014352 CCTCCGTCCCAAAATAAGCG 58.986 55.000 0.00 0.00 0.00 4.68
778 802 1.064979 TCCCTCCGTCCCAAAATAAGC 60.065 52.381 0.00 0.00 0.00 3.09
779 803 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
780 804 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
781 805 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
782 806 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
783 807 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
784 808 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
785 809 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
786 810 1.002069 TAAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
787 811 1.064091 ACTAAGTACTCCCTCCGTCCC 60.064 57.143 0.00 0.00 0.00 4.46
788 812 2.433662 ACTAAGTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
789 813 4.492611 CAAAACTAAGTACTCCCTCCGTC 58.507 47.826 0.00 0.00 0.00 4.79
790 814 3.260128 CCAAAACTAAGTACTCCCTCCGT 59.740 47.826 0.00 0.00 0.00 4.69
791 815 3.260128 ACCAAAACTAAGTACTCCCTCCG 59.740 47.826 0.00 0.00 0.00 4.63
792 816 4.904895 ACCAAAACTAAGTACTCCCTCC 57.095 45.455 0.00 0.00 0.00 4.30
793 817 6.602410 AGTACCAAAACTAAGTACTCCCTC 57.398 41.667 0.00 0.00 42.24 4.30
824 848 3.500448 TTGCCAGGAATACACAAGACA 57.500 42.857 0.00 0.00 0.00 3.41
970 1001 2.812011 GGTGTGATTGGTGACCACTTAC 59.188 50.000 2.46 6.90 30.78 2.34
1078 1109 5.954752 TGATGTAGAGAGTGAAGAGGAACAT 59.045 40.000 0.00 0.00 0.00 2.71
1080 1111 5.393678 GGTGATGTAGAGAGTGAAGAGGAAC 60.394 48.000 0.00 0.00 0.00 3.62
1145 1176 0.240411 GGAAGACTTGCTGCTGCTTG 59.760 55.000 17.00 11.25 40.48 4.01
1180 1211 4.142182 CCGAATGGTGTTATGGCTGAAATT 60.142 41.667 0.00 0.00 0.00 1.82
1181 1212 3.381272 CCGAATGGTGTTATGGCTGAAAT 59.619 43.478 0.00 0.00 0.00 2.17
1182 1213 2.752354 CCGAATGGTGTTATGGCTGAAA 59.248 45.455 0.00 0.00 0.00 2.69
1197 1228 6.767080 TGACGTTATGATGTTTAACCGAATG 58.233 36.000 0.00 0.00 0.00 2.67
1289 1323 3.140325 TCTCGTTTTCTTCTGGGCATT 57.860 42.857 0.00 0.00 0.00 3.56
1327 1361 2.897350 GCCTTCTTCCCCGCATCG 60.897 66.667 0.00 0.00 0.00 3.84
1562 1599 1.134699 TGTCATCTCATGAACGGCTCC 60.135 52.381 0.00 0.00 41.69 4.70
1666 1707 2.572191 TAGCGGAAACACAGATACGG 57.428 50.000 0.00 0.00 0.00 4.02
1689 1730 9.170584 GTTAAAGTTGCAAGAAAATCACTAGAC 57.829 33.333 0.00 0.00 0.00 2.59
1696 1737 6.910433 TCTGTCGTTAAAGTTGCAAGAAAATC 59.090 34.615 0.00 0.00 0.00 2.17
1704 1745 3.244345 CGAACTCTGTCGTTAAAGTTGCA 59.756 43.478 0.00 0.00 36.26 4.08
1709 1750 1.385743 CGGCGAACTCTGTCGTTAAAG 59.614 52.381 0.00 0.00 43.06 1.85
1713 1754 1.371389 GACGGCGAACTCTGTCGTT 60.371 57.895 16.62 0.00 43.06 3.85
1730 1775 9.569167 GTCCGAAATTATCTCAATGTATATCGA 57.431 33.333 0.00 0.00 0.00 3.59
1738 1783 6.369059 AGCTTGTCCGAAATTATCTCAATG 57.631 37.500 0.00 0.00 0.00 2.82
1751 1796 1.593196 CCAAACTGAAGCTTGTCCGA 58.407 50.000 2.10 0.00 0.00 4.55
1840 1967 8.867097 TGTAAGATGTTTCAGGTAGTACTTCTT 58.133 33.333 0.00 2.55 38.11 2.52
1842 1969 9.654663 AATGTAAGATGTTTCAGGTAGTACTTC 57.345 33.333 0.00 0.00 0.00 3.01
1846 1973 9.787435 AACAAATGTAAGATGTTTCAGGTAGTA 57.213 29.630 0.00 0.00 33.73 1.82
1857 1984 7.458397 TCCCTCTGTAAACAAATGTAAGATGT 58.542 34.615 0.00 0.00 0.00 3.06
1858 1985 7.607991 ACTCCCTCTGTAAACAAATGTAAGATG 59.392 37.037 0.00 0.00 0.00 2.90
1859 1986 7.690256 ACTCCCTCTGTAAACAAATGTAAGAT 58.310 34.615 0.00 0.00 0.00 2.40
1861 1988 7.064728 GCTACTCCCTCTGTAAACAAATGTAAG 59.935 40.741 0.00 0.00 0.00 2.34
1862 1989 6.877322 GCTACTCCCTCTGTAAACAAATGTAA 59.123 38.462 0.00 0.00 0.00 2.41
1867 1994 4.591498 TGAGCTACTCCCTCTGTAAACAAA 59.409 41.667 0.00 0.00 0.00 2.83
1868 1995 4.157246 TGAGCTACTCCCTCTGTAAACAA 58.843 43.478 0.00 0.00 0.00 2.83
1869 1996 3.764434 CTGAGCTACTCCCTCTGTAAACA 59.236 47.826 0.00 0.00 0.00 2.83
1870 1997 4.017808 TCTGAGCTACTCCCTCTGTAAAC 58.982 47.826 0.00 0.00 32.24 2.01
1871 1998 4.317530 TCTGAGCTACTCCCTCTGTAAA 57.682 45.455 0.00 0.00 32.24 2.01
1873 2000 3.459969 TCATCTGAGCTACTCCCTCTGTA 59.540 47.826 0.00 0.00 32.24 2.74
1874 2001 2.243478 TCATCTGAGCTACTCCCTCTGT 59.757 50.000 0.00 0.00 32.24 3.41
1875 2002 2.886523 CTCATCTGAGCTACTCCCTCTG 59.113 54.545 0.00 0.00 35.13 3.35
1876 2003 2.782925 TCTCATCTGAGCTACTCCCTCT 59.217 50.000 2.21 0.00 41.80 3.69
1877 2004 3.222173 TCTCATCTGAGCTACTCCCTC 57.778 52.381 2.21 0.00 41.80 4.30
1878 2005 3.678965 TTCTCATCTGAGCTACTCCCT 57.321 47.619 2.21 0.00 41.80 4.20
1879 2006 3.554752 GCATTCTCATCTGAGCTACTCCC 60.555 52.174 2.21 0.00 41.80 4.30
1880 2007 3.069300 TGCATTCTCATCTGAGCTACTCC 59.931 47.826 2.21 0.00 41.80 3.85
1881 2008 4.050553 GTGCATTCTCATCTGAGCTACTC 58.949 47.826 2.21 0.00 41.80 2.59
1882 2009 3.450096 TGTGCATTCTCATCTGAGCTACT 59.550 43.478 2.21 0.00 41.80 2.57
1883 2010 3.790091 TGTGCATTCTCATCTGAGCTAC 58.210 45.455 2.21 0.00 41.80 3.58
1915 2042 4.392047 GGGTCGTCCTCCTTTTCTAAAAA 58.608 43.478 0.00 0.00 0.00 1.94
1916 2043 3.244665 GGGGTCGTCCTCCTTTTCTAAAA 60.245 47.826 0.00 0.00 35.33 1.52
1917 2044 2.303890 GGGGTCGTCCTCCTTTTCTAAA 59.696 50.000 0.00 0.00 35.33 1.85
1918 2045 1.904537 GGGGTCGTCCTCCTTTTCTAA 59.095 52.381 0.00 0.00 35.33 2.10
1919 2046 1.565067 GGGGTCGTCCTCCTTTTCTA 58.435 55.000 0.00 0.00 35.33 2.10
1920 2047 2.373921 GGGGTCGTCCTCCTTTTCT 58.626 57.895 0.00 0.00 35.33 2.52
1936 2063 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
1937 2064 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
1938 2065 3.473647 TCCAGATGCAGAGGCCGG 61.474 66.667 0.00 0.00 40.13 6.13
1939 2066 2.202987 GTCCAGATGCAGAGGCCG 60.203 66.667 0.00 0.00 40.13 6.13
1940 2067 2.037620 ATCGTCCAGATGCAGAGGCC 62.038 60.000 0.00 0.00 38.36 5.19
1941 2068 1.445095 ATCGTCCAGATGCAGAGGC 59.555 57.895 0.00 0.00 38.36 4.70
1949 2076 0.319900 GCCGTATGCATCGTCCAGAT 60.320 55.000 0.19 0.00 41.01 2.90
1950 2077 1.067416 GCCGTATGCATCGTCCAGA 59.933 57.895 0.19 0.00 40.77 3.86
1951 2078 1.956170 GGCCGTATGCATCGTCCAG 60.956 63.158 0.19 0.00 43.89 3.86
1952 2079 2.038814 ATGGCCGTATGCATCGTCCA 62.039 55.000 18.67 18.67 43.89 4.02
1953 2080 0.884704 AATGGCCGTATGCATCGTCC 60.885 55.000 0.19 7.07 43.89 4.79
1954 2081 0.944386 AAATGGCCGTATGCATCGTC 59.056 50.000 0.19 0.00 43.89 4.20
1955 2082 1.388547 AAAATGGCCGTATGCATCGT 58.611 45.000 0.19 0.00 43.89 3.73
1956 2083 3.829886 ATAAAATGGCCGTATGCATCG 57.170 42.857 0.19 7.03 43.89 3.84
1957 2084 9.801873 ATAATTAATAAAATGGCCGTATGCATC 57.198 29.630 0.19 0.00 43.89 3.91
1959 2086 9.416794 CAATAATTAATAAAATGGCCGTATGCA 57.583 29.630 0.00 0.00 43.89 3.96
1960 2087 9.632807 TCAATAATTAATAAAATGGCCGTATGC 57.367 29.630 0.00 0.00 40.16 3.14
1963 2090 9.953697 GTGTCAATAATTAATAAAATGGCCGTA 57.046 29.630 0.00 0.00 0.00 4.02
1964 2091 8.470805 TGTGTCAATAATTAATAAAATGGCCGT 58.529 29.630 0.00 0.00 0.00 5.68
1965 2092 8.864069 TGTGTCAATAATTAATAAAATGGCCG 57.136 30.769 0.00 0.00 0.00 6.13
1977 2104 9.653287 CTCTGTAAGGTCTTGTGTCAATAATTA 57.347 33.333 0.00 0.00 0.00 1.40
1978 2105 8.157476 ACTCTGTAAGGTCTTGTGTCAATAATT 58.843 33.333 0.00 0.00 0.00 1.40
1979 2106 7.680730 ACTCTGTAAGGTCTTGTGTCAATAAT 58.319 34.615 0.00 0.00 0.00 1.28
1980 2107 7.062749 ACTCTGTAAGGTCTTGTGTCAATAA 57.937 36.000 0.00 0.00 0.00 1.40
1981 2108 6.266786 TGACTCTGTAAGGTCTTGTGTCAATA 59.733 38.462 0.00 0.00 35.84 1.90
1982 2109 5.070446 TGACTCTGTAAGGTCTTGTGTCAAT 59.930 40.000 0.00 0.00 35.84 2.57
1983 2110 4.404394 TGACTCTGTAAGGTCTTGTGTCAA 59.596 41.667 0.00 0.00 35.84 3.18
1984 2111 3.958147 TGACTCTGTAAGGTCTTGTGTCA 59.042 43.478 0.00 0.00 35.84 3.58
1985 2112 4.585955 TGACTCTGTAAGGTCTTGTGTC 57.414 45.455 0.00 0.00 35.84 3.67
1986 2113 6.859112 ATATGACTCTGTAAGGTCTTGTGT 57.141 37.500 0.00 0.00 35.84 3.72
1987 2114 8.251026 TGTTATATGACTCTGTAAGGTCTTGTG 58.749 37.037 0.00 0.00 35.84 3.33
1988 2115 8.362464 TGTTATATGACTCTGTAAGGTCTTGT 57.638 34.615 0.00 0.00 35.84 3.16
1989 2116 9.823647 ATTGTTATATGACTCTGTAAGGTCTTG 57.176 33.333 0.00 0.00 35.84 3.02
1993 2120 9.765795 GCTTATTGTTATATGACTCTGTAAGGT 57.234 33.333 0.00 0.00 0.00 3.50
1994 2121 9.209175 GGCTTATTGTTATATGACTCTGTAAGG 57.791 37.037 0.00 0.00 0.00 2.69
1995 2122 9.988815 AGGCTTATTGTTATATGACTCTGTAAG 57.011 33.333 0.00 4.21 26.37 2.34
2000 2127 9.495572 GCTTTAGGCTTATTGTTATATGACTCT 57.504 33.333 0.00 0.00 33.22 3.24
2001 2128 8.722394 GGCTTTAGGCTTATTGTTATATGACTC 58.278 37.037 0.00 0.00 41.46 3.36
2002 2129 8.217799 TGGCTTTAGGCTTATTGTTATATGACT 58.782 33.333 0.00 0.00 41.69 3.41
2003 2130 8.290325 GTGGCTTTAGGCTTATTGTTATATGAC 58.710 37.037 0.00 0.00 41.69 3.06
2004 2131 7.447238 GGTGGCTTTAGGCTTATTGTTATATGA 59.553 37.037 0.00 0.00 41.69 2.15
2005 2132 7.230510 TGGTGGCTTTAGGCTTATTGTTATATG 59.769 37.037 0.00 0.00 41.69 1.78
2006 2133 7.294584 TGGTGGCTTTAGGCTTATTGTTATAT 58.705 34.615 0.00 0.00 41.69 0.86
2007 2134 6.664714 TGGTGGCTTTAGGCTTATTGTTATA 58.335 36.000 0.00 0.00 41.69 0.98
2008 2135 5.515106 TGGTGGCTTTAGGCTTATTGTTAT 58.485 37.500 0.00 0.00 41.69 1.89
2009 2136 4.924625 TGGTGGCTTTAGGCTTATTGTTA 58.075 39.130 0.00 0.00 41.69 2.41
2010 2137 3.773560 TGGTGGCTTTAGGCTTATTGTT 58.226 40.909 0.00 0.00 41.69 2.83
2011 2138 3.449746 TGGTGGCTTTAGGCTTATTGT 57.550 42.857 0.00 0.00 41.69 2.71
2012 2139 4.220602 AGTTTGGTGGCTTTAGGCTTATTG 59.779 41.667 0.00 0.00 41.69 1.90
2013 2140 4.416516 AGTTTGGTGGCTTTAGGCTTATT 58.583 39.130 0.00 0.00 41.69 1.40
2014 2141 4.047627 AGTTTGGTGGCTTTAGGCTTAT 57.952 40.909 0.00 0.00 41.69 1.73
2015 2142 3.518992 AGTTTGGTGGCTTTAGGCTTA 57.481 42.857 0.00 0.00 41.69 3.09
2016 2143 2.381752 AGTTTGGTGGCTTTAGGCTT 57.618 45.000 0.00 0.00 41.69 4.35
2017 2144 3.421844 CTTAGTTTGGTGGCTTTAGGCT 58.578 45.455 4.87 0.00 41.69 4.58
2018 2145 2.094700 GCTTAGTTTGGTGGCTTTAGGC 60.095 50.000 0.00 0.00 41.50 3.93
2019 2146 3.153919 TGCTTAGTTTGGTGGCTTTAGG 58.846 45.455 0.00 0.00 0.00 2.69
2020 2147 4.037446 TGTTGCTTAGTTTGGTGGCTTTAG 59.963 41.667 0.00 0.00 0.00 1.85
2021 2148 3.954904 TGTTGCTTAGTTTGGTGGCTTTA 59.045 39.130 0.00 0.00 0.00 1.85
2022 2149 2.763448 TGTTGCTTAGTTTGGTGGCTTT 59.237 40.909 0.00 0.00 0.00 3.51
2023 2150 2.383855 TGTTGCTTAGTTTGGTGGCTT 58.616 42.857 0.00 0.00 0.00 4.35
2024 2151 2.065899 TGTTGCTTAGTTTGGTGGCT 57.934 45.000 0.00 0.00 0.00 4.75
2025 2152 2.558359 AGATGTTGCTTAGTTTGGTGGC 59.442 45.455 0.00 0.00 0.00 5.01
2026 2153 3.569701 ACAGATGTTGCTTAGTTTGGTGG 59.430 43.478 0.00 0.00 0.00 4.61
2027 2154 4.611355 CGACAGATGTTGCTTAGTTTGGTG 60.611 45.833 0.00 0.00 0.00 4.17
2028 2155 3.498397 CGACAGATGTTGCTTAGTTTGGT 59.502 43.478 0.00 0.00 0.00 3.67
2029 2156 4.070581 CGACAGATGTTGCTTAGTTTGG 57.929 45.455 0.00 0.00 0.00 3.28
2039 2166 2.898729 AGGGATAGCGACAGATGTTG 57.101 50.000 0.00 0.00 0.00 3.33
2040 2167 3.511934 GGATAGGGATAGCGACAGATGTT 59.488 47.826 0.00 0.00 0.00 2.71
2041 2168 3.093057 GGATAGGGATAGCGACAGATGT 58.907 50.000 0.00 0.00 0.00 3.06
2042 2169 3.092301 TGGATAGGGATAGCGACAGATG 58.908 50.000 0.00 0.00 0.00 2.90
2043 2170 3.245443 ACTGGATAGGGATAGCGACAGAT 60.245 47.826 0.00 0.00 0.00 2.90
2044 2171 2.108425 ACTGGATAGGGATAGCGACAGA 59.892 50.000 0.00 0.00 0.00 3.41
2045 2172 2.520069 ACTGGATAGGGATAGCGACAG 58.480 52.381 0.00 0.00 0.00 3.51
2046 2173 2.628178 CAACTGGATAGGGATAGCGACA 59.372 50.000 0.00 0.00 0.00 4.35
2047 2174 2.891580 TCAACTGGATAGGGATAGCGAC 59.108 50.000 0.00 0.00 0.00 5.19
2048 2175 3.238788 TCAACTGGATAGGGATAGCGA 57.761 47.619 0.00 0.00 0.00 4.93
2049 2176 3.259374 ACATCAACTGGATAGGGATAGCG 59.741 47.826 0.00 0.00 33.95 4.26
2050 2177 4.899352 ACATCAACTGGATAGGGATAGC 57.101 45.455 0.00 0.00 33.95 2.97
2051 2178 6.537453 CCTACATCAACTGGATAGGGATAG 57.463 45.833 0.00 0.00 33.95 2.08
2055 2182 2.639839 CCCCTACATCAACTGGATAGGG 59.360 54.545 7.56 7.56 45.83 3.53
2056 2183 2.039084 GCCCCTACATCAACTGGATAGG 59.961 54.545 0.00 0.00 33.95 2.57
2057 2184 2.289072 CGCCCCTACATCAACTGGATAG 60.289 54.545 0.00 0.00 33.95 2.08
2058 2185 1.691976 CGCCCCTACATCAACTGGATA 59.308 52.381 0.00 0.00 33.95 2.59
2059 2186 0.469917 CGCCCCTACATCAACTGGAT 59.530 55.000 0.00 0.00 36.39 3.41
2060 2187 1.904771 CGCCCCTACATCAACTGGA 59.095 57.895 0.00 0.00 0.00 3.86
2061 2188 1.819632 GCGCCCCTACATCAACTGG 60.820 63.158 0.00 0.00 0.00 4.00
2062 2189 1.091771 CAGCGCCCCTACATCAACTG 61.092 60.000 2.29 0.00 0.00 3.16
2063 2190 1.221840 CAGCGCCCCTACATCAACT 59.778 57.895 2.29 0.00 0.00 3.16
2064 2191 0.392461 TTCAGCGCCCCTACATCAAC 60.392 55.000 2.29 0.00 0.00 3.18
2065 2192 0.326595 TTTCAGCGCCCCTACATCAA 59.673 50.000 2.29 0.00 0.00 2.57
2066 2193 0.107703 CTTTCAGCGCCCCTACATCA 60.108 55.000 2.29 0.00 0.00 3.07
2067 2194 0.107654 ACTTTCAGCGCCCCTACATC 60.108 55.000 2.29 0.00 0.00 3.06
2068 2195 0.107654 GACTTTCAGCGCCCCTACAT 60.108 55.000 2.29 0.00 0.00 2.29
2069 2196 1.192146 AGACTTTCAGCGCCCCTACA 61.192 55.000 2.29 0.00 0.00 2.74
2070 2197 0.036294 AAGACTTTCAGCGCCCCTAC 60.036 55.000 2.29 0.00 0.00 3.18
2071 2198 0.036388 CAAGACTTTCAGCGCCCCTA 60.036 55.000 2.29 0.00 0.00 3.53
2072 2199 1.302832 CAAGACTTTCAGCGCCCCT 60.303 57.895 2.29 0.00 0.00 4.79
2073 2200 2.335712 CCAAGACTTTCAGCGCCCC 61.336 63.158 2.29 0.00 0.00 5.80
2074 2201 2.982744 GCCAAGACTTTCAGCGCCC 61.983 63.158 2.29 0.00 0.00 6.13
2075 2202 2.563427 GCCAAGACTTTCAGCGCC 59.437 61.111 2.29 0.00 0.00 6.53
2076 2203 0.673644 TAGGCCAAGACTTTCAGCGC 60.674 55.000 5.01 0.00 0.00 5.92
2077 2204 1.808411 TTAGGCCAAGACTTTCAGCG 58.192 50.000 5.01 0.00 0.00 5.18
2078 2205 3.628032 GGTATTAGGCCAAGACTTTCAGC 59.372 47.826 5.01 0.00 0.00 4.26
2079 2206 4.843728 TGGTATTAGGCCAAGACTTTCAG 58.156 43.478 5.01 0.00 32.29 3.02
2080 2207 4.919774 TGGTATTAGGCCAAGACTTTCA 57.080 40.909 5.01 0.00 32.29 2.69
2081 2208 5.475564 TGTTTGGTATTAGGCCAAGACTTTC 59.524 40.000 5.01 0.00 45.47 2.62
2082 2209 5.390387 TGTTTGGTATTAGGCCAAGACTTT 58.610 37.500 5.01 0.00 45.47 2.66
2083 2210 4.993028 TGTTTGGTATTAGGCCAAGACTT 58.007 39.130 5.01 0.00 45.47 3.01
2084 2211 4.288626 TCTGTTTGGTATTAGGCCAAGACT 59.711 41.667 5.01 0.00 45.47 3.24
2085 2212 4.395231 GTCTGTTTGGTATTAGGCCAAGAC 59.605 45.833 5.01 4.78 45.47 3.01
2086 2213 4.566907 GGTCTGTTTGGTATTAGGCCAAGA 60.567 45.833 5.01 0.00 45.47 3.02
2087 2214 3.694566 GGTCTGTTTGGTATTAGGCCAAG 59.305 47.826 5.01 0.00 45.47 3.61
2088 2215 3.332485 AGGTCTGTTTGGTATTAGGCCAA 59.668 43.478 5.01 0.00 43.51 4.52
2089 2216 2.916934 AGGTCTGTTTGGTATTAGGCCA 59.083 45.455 5.01 0.00 37.39 5.36
2090 2217 3.542648 GAGGTCTGTTTGGTATTAGGCC 58.457 50.000 0.00 0.00 35.18 5.19
2091 2218 3.195661 CGAGGTCTGTTTGGTATTAGGC 58.804 50.000 0.00 0.00 0.00 3.93
2092 2219 3.195661 GCGAGGTCTGTTTGGTATTAGG 58.804 50.000 0.00 0.00 0.00 2.69
2093 2220 3.857052 TGCGAGGTCTGTTTGGTATTAG 58.143 45.455 0.00 0.00 0.00 1.73
2094 2221 3.857052 CTGCGAGGTCTGTTTGGTATTA 58.143 45.455 0.00 0.00 0.00 0.98
2095 2222 2.699954 CTGCGAGGTCTGTTTGGTATT 58.300 47.619 0.00 0.00 0.00 1.89
2096 2223 1.676014 GCTGCGAGGTCTGTTTGGTAT 60.676 52.381 0.00 0.00 0.00 2.73
2097 2224 0.320421 GCTGCGAGGTCTGTTTGGTA 60.320 55.000 0.00 0.00 0.00 3.25
2098 2225 1.598130 GCTGCGAGGTCTGTTTGGT 60.598 57.895 0.00 0.00 0.00 3.67
2099 2226 2.328099 GGCTGCGAGGTCTGTTTGG 61.328 63.158 0.00 0.00 0.00 3.28
2100 2227 1.165907 TTGGCTGCGAGGTCTGTTTG 61.166 55.000 0.00 0.00 0.00 2.93
2101 2228 0.465460 TTTGGCTGCGAGGTCTGTTT 60.465 50.000 0.00 0.00 0.00 2.83
2102 2229 1.148273 TTTGGCTGCGAGGTCTGTT 59.852 52.632 0.00 0.00 0.00 3.16
2103 2230 1.598130 GTTTGGCTGCGAGGTCTGT 60.598 57.895 0.00 0.00 0.00 3.41
2104 2231 2.328099 GGTTTGGCTGCGAGGTCTG 61.328 63.158 0.00 0.00 0.00 3.51
2105 2232 1.192146 TAGGTTTGGCTGCGAGGTCT 61.192 55.000 0.00 0.00 0.00 3.85
2106 2233 0.321298 TTAGGTTTGGCTGCGAGGTC 60.321 55.000 0.00 0.00 0.00 3.85
2107 2234 0.605589 GTTAGGTTTGGCTGCGAGGT 60.606 55.000 0.00 0.00 0.00 3.85
2108 2235 0.605319 TGTTAGGTTTGGCTGCGAGG 60.605 55.000 0.00 0.00 0.00 4.63
2109 2236 1.398390 GATGTTAGGTTTGGCTGCGAG 59.602 52.381 0.00 0.00 0.00 5.03
2110 2237 1.003118 AGATGTTAGGTTTGGCTGCGA 59.997 47.619 0.00 0.00 0.00 5.10
2111 2238 1.453155 AGATGTTAGGTTTGGCTGCG 58.547 50.000 0.00 0.00 0.00 5.18
2112 2239 4.095036 GTCTTAGATGTTAGGTTTGGCTGC 59.905 45.833 0.00 0.00 0.00 5.25
2113 2240 5.491982 AGTCTTAGATGTTAGGTTTGGCTG 58.508 41.667 0.00 0.00 0.00 4.85
2114 2241 5.763876 AGTCTTAGATGTTAGGTTTGGCT 57.236 39.130 0.00 0.00 0.00 4.75
2115 2242 5.938125 TCAAGTCTTAGATGTTAGGTTTGGC 59.062 40.000 0.00 0.00 0.00 4.52
2116 2243 6.595716 CCTCAAGTCTTAGATGTTAGGTTTGG 59.404 42.308 0.00 0.00 0.00 3.28
2117 2244 7.162082 ACCTCAAGTCTTAGATGTTAGGTTTG 58.838 38.462 4.26 0.00 30.79 2.93
2118 2245 7.317722 ACCTCAAGTCTTAGATGTTAGGTTT 57.682 36.000 4.26 0.00 30.79 3.27
2119 2246 6.936968 ACCTCAAGTCTTAGATGTTAGGTT 57.063 37.500 4.26 0.00 30.79 3.50
2120 2247 6.532988 GACCTCAAGTCTTAGATGTTAGGT 57.467 41.667 8.38 8.38 42.69 3.08
2135 2262 7.838523 CAGACGTCCTGATTGAGACCTCAAG 62.839 52.000 13.01 4.79 45.78 3.02
2136 2263 6.116539 CAGACGTCCTGATTGAGACCTCAA 62.117 50.000 13.01 14.02 45.78 3.02
2137 2264 1.819288 GACGTCCTGATTGAGACCTCA 59.181 52.381 3.51 0.00 37.91 3.86
2138 2265 2.096248 AGACGTCCTGATTGAGACCTC 58.904 52.381 13.01 0.00 0.00 3.85
2139 2266 1.821753 CAGACGTCCTGATTGAGACCT 59.178 52.381 13.01 0.00 45.78 3.85
2140 2267 1.737363 GCAGACGTCCTGATTGAGACC 60.737 57.143 13.01 0.00 45.78 3.85
2141 2268 1.634702 GCAGACGTCCTGATTGAGAC 58.365 55.000 13.01 0.00 45.78 3.36
2142 2269 0.532573 GGCAGACGTCCTGATTGAGA 59.467 55.000 13.01 0.00 45.78 3.27
2143 2270 0.803768 CGGCAGACGTCCTGATTGAG 60.804 60.000 13.01 0.00 45.78 3.02
2144 2271 1.215382 CGGCAGACGTCCTGATTGA 59.785 57.895 13.01 0.00 45.78 2.57
2145 2272 1.811266 CCGGCAGACGTCCTGATTG 60.811 63.158 13.01 4.52 45.78 2.67
2146 2273 2.579201 CCGGCAGACGTCCTGATT 59.421 61.111 13.01 0.00 45.78 2.57
2147 2274 2.849096 TACCCGGCAGACGTCCTGAT 62.849 60.000 13.01 0.00 45.78 2.90
2148 2275 2.849096 ATACCCGGCAGACGTCCTGA 62.849 60.000 13.01 0.00 45.78 3.86
2149 2276 2.423898 ATACCCGGCAGACGTCCTG 61.424 63.158 13.01 11.01 45.67 3.86
2150 2277 2.043248 ATACCCGGCAGACGTCCT 60.043 61.111 13.01 0.00 42.24 3.85
2151 2278 2.106332 CATACCCGGCAGACGTCC 59.894 66.667 13.01 0.00 42.24 4.79
2152 2279 2.106332 CCATACCCGGCAGACGTC 59.894 66.667 7.70 7.70 42.24 4.34
2153 2280 3.467226 CCCATACCCGGCAGACGT 61.467 66.667 0.00 0.00 42.24 4.34
2154 2281 4.910585 GCCCATACCCGGCAGACG 62.911 72.222 0.00 0.00 46.27 4.18
2168 2295 2.273449 CCAGACTGATGGGTGCCC 59.727 66.667 3.32 0.00 36.64 5.36
2169 2296 2.439156 GCCAGACTGATGGGTGCC 60.439 66.667 3.32 0.00 40.97 5.01
2170 2297 2.821366 CGCCAGACTGATGGGTGC 60.821 66.667 3.32 0.00 40.97 5.01
2171 2298 1.742880 CACGCCAGACTGATGGGTG 60.743 63.158 3.32 9.06 40.97 4.61
2172 2299 2.665000 CACGCCAGACTGATGGGT 59.335 61.111 3.32 0.00 40.97 4.51
2173 2300 2.809861 AAGCACGCCAGACTGATGGG 62.810 60.000 3.32 0.00 40.97 4.00
2174 2301 1.364626 GAAGCACGCCAGACTGATGG 61.365 60.000 3.32 0.00 43.72 3.51
2175 2302 0.390866 AGAAGCACGCCAGACTGATG 60.391 55.000 3.32 0.54 0.00 3.07
2176 2303 0.108424 GAGAAGCACGCCAGACTGAT 60.108 55.000 3.32 0.00 0.00 2.90
2177 2304 1.290324 GAGAAGCACGCCAGACTGA 59.710 57.895 3.32 0.00 0.00 3.41
2178 2305 0.601046 TTGAGAAGCACGCCAGACTG 60.601 55.000 0.00 0.00 0.00 3.51
2179 2306 0.601311 GTTGAGAAGCACGCCAGACT 60.601 55.000 0.00 0.00 0.00 3.24
2180 2307 1.569479 GGTTGAGAAGCACGCCAGAC 61.569 60.000 0.00 0.00 0.00 3.51
2181 2308 1.301716 GGTTGAGAAGCACGCCAGA 60.302 57.895 0.00 0.00 0.00 3.86
2182 2309 1.572085 CTGGTTGAGAAGCACGCCAG 61.572 60.000 0.00 0.00 40.92 4.85
2183 2310 1.597854 CTGGTTGAGAAGCACGCCA 60.598 57.895 0.00 0.00 34.75 5.69
2184 2311 2.328099 CCTGGTTGAGAAGCACGCC 61.328 63.158 0.00 0.00 34.75 5.68
2185 2312 1.301716 TCCTGGTTGAGAAGCACGC 60.302 57.895 0.00 0.00 34.75 5.34
2186 2313 1.284982 CGTCCTGGTTGAGAAGCACG 61.285 60.000 0.00 0.00 34.75 5.34
2187 2314 1.569479 GCGTCCTGGTTGAGAAGCAC 61.569 60.000 0.00 0.00 37.43 4.40
2188 2315 1.301716 GCGTCCTGGTTGAGAAGCA 60.302 57.895 0.00 0.00 37.43 3.91
2189 2316 2.035442 GGCGTCCTGGTTGAGAAGC 61.035 63.158 0.00 0.00 36.86 3.86
2190 2317 1.674057 AGGCGTCCTGGTTGAGAAG 59.326 57.895 0.00 0.00 29.57 2.85
2191 2318 3.885814 AGGCGTCCTGGTTGAGAA 58.114 55.556 0.00 0.00 29.57 2.87
2201 2328 4.910585 CATACCCGGCAGGCGTCC 62.911 72.222 16.17 0.00 40.58 4.79
2202 2329 3.792053 CTCATACCCGGCAGGCGTC 62.792 68.421 16.17 0.00 40.58 5.19
2203 2330 3.849951 CTCATACCCGGCAGGCGT 61.850 66.667 16.17 0.00 40.58 5.68
2204 2331 4.609018 CCTCATACCCGGCAGGCG 62.609 72.222 9.96 9.96 40.58 5.52
2205 2332 4.937431 GCCTCATACCCGGCAGGC 62.937 72.222 0.00 3.18 45.59 4.85
2227 2354 1.250154 TATTGGTGGCAAGTGGCTGC 61.250 55.000 6.41 0.00 44.01 5.25
2228 2355 0.527565 GTATTGGTGGCAAGTGGCTG 59.472 55.000 6.41 0.00 44.01 4.85
2229 2356 0.112218 TGTATTGGTGGCAAGTGGCT 59.888 50.000 6.41 0.00 44.01 4.75
2230 2357 1.134946 GATGTATTGGTGGCAAGTGGC 59.865 52.381 0.00 0.00 43.74 5.01
2231 2358 2.726821 AGATGTATTGGTGGCAAGTGG 58.273 47.619 0.00 0.00 0.00 4.00
2232 2359 3.758023 TGAAGATGTATTGGTGGCAAGTG 59.242 43.478 0.00 0.00 0.00 3.16
2233 2360 4.012374 CTGAAGATGTATTGGTGGCAAGT 58.988 43.478 0.00 0.00 0.00 3.16
2234 2361 4.264253 TCTGAAGATGTATTGGTGGCAAG 58.736 43.478 0.00 0.00 0.00 4.01
2235 2362 4.299586 TCTGAAGATGTATTGGTGGCAA 57.700 40.909 0.00 0.00 0.00 4.52
2236 2363 3.998913 TCTGAAGATGTATTGGTGGCA 57.001 42.857 0.00 0.00 0.00 4.92
2237 2364 4.095483 CAGTTCTGAAGATGTATTGGTGGC 59.905 45.833 0.00 0.00 0.00 5.01
2238 2365 5.248640 ACAGTTCTGAAGATGTATTGGTGG 58.751 41.667 6.83 0.00 0.00 4.61
2239 2366 7.063898 CAGTACAGTTCTGAAGATGTATTGGTG 59.936 40.741 19.69 12.02 34.23 4.17
2240 2367 7.099764 CAGTACAGTTCTGAAGATGTATTGGT 58.900 38.462 19.69 6.93 34.23 3.67
2241 2368 6.036517 GCAGTACAGTTCTGAAGATGTATTGG 59.963 42.308 24.08 15.59 36.75 3.16
2242 2369 6.815641 AGCAGTACAGTTCTGAAGATGTATTG 59.184 38.462 21.45 21.45 38.29 1.90
2243 2370 6.815641 CAGCAGTACAGTTCTGAAGATGTATT 59.184 38.462 11.21 10.14 35.20 1.89
2244 2371 6.336566 CAGCAGTACAGTTCTGAAGATGTAT 58.663 40.000 11.21 5.74 35.20 2.29
2245 2372 5.714047 CAGCAGTACAGTTCTGAAGATGTA 58.286 41.667 11.21 9.98 35.20 2.29
2246 2373 4.564041 CAGCAGTACAGTTCTGAAGATGT 58.436 43.478 11.21 11.56 35.20 3.06
2247 2374 3.370366 GCAGCAGTACAGTTCTGAAGATG 59.630 47.826 11.21 4.99 35.20 2.90
2248 2375 3.007290 TGCAGCAGTACAGTTCTGAAGAT 59.993 43.478 11.21 0.00 35.20 2.40
2249 2376 2.365293 TGCAGCAGTACAGTTCTGAAGA 59.635 45.455 11.21 0.00 35.20 2.87
2250 2377 2.759191 TGCAGCAGTACAGTTCTGAAG 58.241 47.619 11.21 3.64 35.20 3.02
2251 2378 2.908688 TGCAGCAGTACAGTTCTGAA 57.091 45.000 11.21 0.00 35.20 3.02
2252 2379 2.299867 TGATGCAGCAGTACAGTTCTGA 59.700 45.455 11.21 0.00 35.20 3.27
2253 2380 2.691927 TGATGCAGCAGTACAGTTCTG 58.308 47.619 0.00 2.83 36.18 3.02
2254 2381 3.070018 GTTGATGCAGCAGTACAGTTCT 58.930 45.455 4.20 0.00 0.00 3.01
2255 2382 2.160417 GGTTGATGCAGCAGTACAGTTC 59.840 50.000 4.20 0.00 0.00 3.01
2256 2383 2.154462 GGTTGATGCAGCAGTACAGTT 58.846 47.619 4.20 0.00 0.00 3.16
2257 2384 1.349026 AGGTTGATGCAGCAGTACAGT 59.651 47.619 4.20 0.00 0.00 3.55
2258 2385 2.105006 AGGTTGATGCAGCAGTACAG 57.895 50.000 4.20 0.00 0.00 2.74
2259 2386 2.153645 CAAGGTTGATGCAGCAGTACA 58.846 47.619 4.20 0.00 0.00 2.90
2260 2387 1.135575 GCAAGGTTGATGCAGCAGTAC 60.136 52.381 4.20 0.73 43.29 2.73
2261 2388 1.167851 GCAAGGTTGATGCAGCAGTA 58.832 50.000 4.20 0.00 43.29 2.74
2262 2389 1.530013 GGCAAGGTTGATGCAGCAGT 61.530 55.000 4.20 0.00 45.60 4.40
2263 2390 1.214589 GGCAAGGTTGATGCAGCAG 59.785 57.895 4.20 0.00 45.60 4.24
2264 2391 2.277591 GGGCAAGGTTGATGCAGCA 61.278 57.895 0.00 0.00 45.60 4.41
2265 2392 2.221906 CTGGGCAAGGTTGATGCAGC 62.222 60.000 0.00 0.00 45.60 5.25
2266 2393 0.896940 ACTGGGCAAGGTTGATGCAG 60.897 55.000 0.00 0.00 45.60 4.41
2267 2394 0.895100 GACTGGGCAAGGTTGATGCA 60.895 55.000 0.00 0.00 45.60 3.96
2268 2395 0.610232 AGACTGGGCAAGGTTGATGC 60.610 55.000 0.00 0.00 43.08 3.91
2269 2396 2.749621 GTTAGACTGGGCAAGGTTGATG 59.250 50.000 0.00 0.00 0.00 3.07
2270 2397 2.644798 AGTTAGACTGGGCAAGGTTGAT 59.355 45.455 0.00 0.00 0.00 2.57
2271 2398 2.054799 AGTTAGACTGGGCAAGGTTGA 58.945 47.619 0.00 0.00 0.00 3.18
2272 2399 2.154462 CAGTTAGACTGGGCAAGGTTG 58.846 52.381 0.00 0.00 42.35 3.77
2273 2400 1.545651 GCAGTTAGACTGGGCAAGGTT 60.546 52.381 9.85 0.00 46.01 3.50
2274 2401 0.036875 GCAGTTAGACTGGGCAAGGT 59.963 55.000 9.85 0.00 46.01 3.50
2275 2402 0.678048 GGCAGTTAGACTGGGCAAGG 60.678 60.000 9.85 0.00 46.01 3.61
2276 2403 1.021390 CGGCAGTTAGACTGGGCAAG 61.021 60.000 9.85 0.00 46.01 4.01
2277 2404 1.003839 CGGCAGTTAGACTGGGCAA 60.004 57.895 9.85 0.00 46.01 4.52
2278 2405 2.662596 CGGCAGTTAGACTGGGCA 59.337 61.111 9.85 0.00 46.01 5.36
2279 2406 2.820037 GCGGCAGTTAGACTGGGC 60.820 66.667 9.85 3.01 46.01 5.36
2280 2407 2.125106 GGCGGCAGTTAGACTGGG 60.125 66.667 3.07 0.00 46.01 4.45
2281 2408 2.298158 ATCGGCGGCAGTTAGACTGG 62.298 60.000 10.53 0.00 46.01 4.00
2283 2410 1.141881 CATCGGCGGCAGTTAGACT 59.858 57.895 10.53 0.00 0.00 3.24
2284 2411 2.526120 GCATCGGCGGCAGTTAGAC 61.526 63.158 10.53 0.00 0.00 2.59
2285 2412 2.202878 GCATCGGCGGCAGTTAGA 60.203 61.111 10.53 0.00 0.00 2.10
2286 2413 3.272334 GGCATCGGCGGCAGTTAG 61.272 66.667 10.53 0.00 42.47 2.34
2287 2414 4.089239 TGGCATCGGCGGCAGTTA 62.089 61.111 10.53 0.00 42.47 2.24
2295 2422 2.916502 TATGTCGTGGTGGCATCGGC 62.917 60.000 0.00 0.00 40.13 5.54
2296 2423 1.142965 TATGTCGTGGTGGCATCGG 59.857 57.895 0.00 0.00 0.00 4.18
2297 2424 0.459411 TGTATGTCGTGGTGGCATCG 60.459 55.000 0.00 0.00 0.00 3.84
2298 2425 1.006832 GTGTATGTCGTGGTGGCATC 58.993 55.000 0.00 0.00 0.00 3.91
2299 2426 0.739462 CGTGTATGTCGTGGTGGCAT 60.739 55.000 0.00 0.00 0.00 4.40
2300 2427 1.373622 CGTGTATGTCGTGGTGGCA 60.374 57.895 0.00 0.00 0.00 4.92
2301 2428 0.109179 TACGTGTATGTCGTGGTGGC 60.109 55.000 0.00 0.00 41.62 5.01
2302 2429 1.621107 GTACGTGTATGTCGTGGTGG 58.379 55.000 0.00 0.00 41.62 4.61
2303 2430 1.068402 TGGTACGTGTATGTCGTGGTG 60.068 52.381 0.00 0.00 41.62 4.17
2304 2431 1.246649 TGGTACGTGTATGTCGTGGT 58.753 50.000 0.00 0.00 41.62 4.16
2305 2432 2.350899 TTGGTACGTGTATGTCGTGG 57.649 50.000 0.00 0.00 41.62 4.94
2306 2433 4.031314 CAGAATTGGTACGTGTATGTCGTG 59.969 45.833 0.00 0.00 41.62 4.35
2307 2434 4.171005 CAGAATTGGTACGTGTATGTCGT 58.829 43.478 0.00 0.00 43.86 4.34
2308 2435 3.000078 GCAGAATTGGTACGTGTATGTCG 60.000 47.826 0.00 0.00 0.00 4.35
2309 2436 3.930229 TGCAGAATTGGTACGTGTATGTC 59.070 43.478 0.00 0.00 0.00 3.06
2310 2437 3.682858 GTGCAGAATTGGTACGTGTATGT 59.317 43.478 0.00 0.00 0.00 2.29
2311 2438 3.932710 AGTGCAGAATTGGTACGTGTATG 59.067 43.478 0.00 0.00 0.00 2.39
2345 2472 9.439461 TGAGATATATATGACCCAGGGAATAAG 57.561 37.037 14.54 0.00 0.00 1.73
2357 2484 4.363999 GGCCTGCGTGAGATATATATGAC 58.636 47.826 0.00 0.00 0.00 3.06
2373 2690 3.508840 GTACATGCACCGGCCTGC 61.509 66.667 9.99 9.99 39.00 4.85
2413 2730 8.268850 ACTATGAATTACTGTGAATGGTCAAC 57.731 34.615 0.00 0.00 34.87 3.18
2428 2745 7.012327 GCAAAGCATACCACTGACTATGAATTA 59.988 37.037 0.00 0.00 0.00 1.40
2447 2764 0.322816 GATGAGTCCCCTGCAAAGCA 60.323 55.000 0.00 0.00 36.92 3.91
2448 2765 0.034670 AGATGAGTCCCCTGCAAAGC 60.035 55.000 0.00 0.00 0.00 3.51
2449 2766 1.741732 CGAGATGAGTCCCCTGCAAAG 60.742 57.143 0.00 0.00 0.00 2.77
2499 2838 2.498481 TCCATGGTTACTAGTGTTCCCG 59.502 50.000 12.58 0.08 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.