Multiple sequence alignment - TraesCS6D01G229100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G229100 chr6D 100.000 4004 0 0 1 4004 320224612 320228615 0.000000e+00 7395.0
1 TraesCS6D01G229100 chr6D 100.000 30 0 0 236 265 320224814 320224843 5.590000e-04 56.5
2 TraesCS6D01G229100 chr6D 100.000 30 0 0 203 232 320224847 320224876 5.590000e-04 56.5
3 TraesCS6D01G229100 chr6B 93.312 3813 174 42 226 3998 502487717 502483946 0.000000e+00 5553.0
4 TraesCS6D01G229100 chr6A 95.765 2456 87 8 904 3346 457682933 457685384 0.000000e+00 3943.0
5 TraesCS6D01G229100 chr6A 92.150 535 32 7 3388 3915 457685762 457686293 0.000000e+00 747.0
6 TraesCS6D01G229100 chr6A 84.821 112 13 3 3894 4004 457686298 457686406 4.230000e-20 110.0
7 TraesCS6D01G229100 chr2D 82.971 276 45 2 3545 3819 523028490 523028764 8.590000e-62 248.0
8 TraesCS6D01G229100 chr2D 77.273 242 51 4 3580 3819 220670866 220671105 5.400000e-29 139.0
9 TraesCS6D01G229100 chr2B 82.909 275 47 0 3545 3819 616934591 616934865 8.590000e-62 248.0
10 TraesCS6D01G229100 chr2B 77.489 231 42 8 3594 3819 290519771 290519996 3.250000e-26 130.0
11 TraesCS6D01G229100 chr2A 82.971 276 45 2 3545 3819 668242743 668243017 8.590000e-62 248.0
12 TraesCS6D01G229100 chr4D 83.908 87 14 0 3734 3820 387441866 387441952 2.560000e-12 84.2
13 TraesCS6D01G229100 chr4B 83.908 87 14 0 3734 3820 475811331 475811417 2.560000e-12 84.2
14 TraesCS6D01G229100 chr4B 100.000 28 0 0 1033 1060 262409843 262409816 7.000000e-03 52.8
15 TraesCS6D01G229100 chr4A 83.908 87 14 0 3734 3820 68689458 68689544 2.560000e-12 84.2
16 TraesCS6D01G229100 chr3B 92.308 39 3 0 3 41 77590539 77590501 5.590000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G229100 chr6D 320224612 320228615 4003 False 2502.666667 7395 100.000 1 4004 3 chr6D.!!$F1 4003
1 TraesCS6D01G229100 chr6B 502483946 502487717 3771 True 5553.000000 5553 93.312 226 3998 1 chr6B.!!$R1 3772
2 TraesCS6D01G229100 chr6A 457682933 457686406 3473 False 1600.000000 3943 90.912 904 4004 3 chr6A.!!$F1 3100

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 102 0.038343 CTGCCACCAAAATTGTCCGG 60.038 55.0 0.00 0.00 0.0 5.14 F
103 104 0.038618 GCCACCAAAATTGTCCGGAC 60.039 55.0 28.17 28.17 0.0 4.79 F
562 565 0.103208 CCACCTCTATGAGCACCGTC 59.897 60.0 0.00 0.00 0.0 4.79 F
745 784 0.107703 TGACTGATTGGACGATGGGC 60.108 55.0 0.00 0.00 0.0 5.36 F
746 785 0.107703 GACTGATTGGACGATGGGCA 60.108 55.0 0.00 0.00 0.0 5.36 F
846 885 0.177373 GATTTAAGACGCCGGGACCT 59.823 55.0 2.18 0.00 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1630 1686 0.868406 GCTGGCAGTACAGACACAAC 59.132 55.000 17.16 0.00 40.97 3.32 R
2284 2340 2.887152 AGTGGATGTTCTTTGCTTGTCC 59.113 45.455 0.00 0.00 0.00 4.02 R
2317 2373 1.443802 CTCCGAAGAAACCCAAGAGC 58.556 55.000 0.00 0.00 0.00 4.09 R
2518 2574 2.359975 GTTCGGCTTCACCCCCAG 60.360 66.667 0.00 0.00 33.26 4.45 R
2599 2655 2.991250 ACGCATGTCCTCAAATAGCTT 58.009 42.857 0.00 0.00 0.00 3.74 R
3008 3064 1.524355 CTGACACGAGTGCAAGACTTG 59.476 52.381 11.02 11.02 41.48 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.866872 TAAGGGCAACTCCAATGCG 58.133 52.632 0.00 0.00 44.75 4.73
19 20 0.679640 TAAGGGCAACTCCAATGCGG 60.680 55.000 0.00 0.00 44.75 5.69
20 21 3.451894 GGGCAACTCCAATGCGGG 61.452 66.667 0.00 0.00 44.75 6.13
21 22 2.676471 GGCAACTCCAATGCGGGT 60.676 61.111 0.00 0.00 44.75 5.28
22 23 2.700773 GGCAACTCCAATGCGGGTC 61.701 63.158 0.00 0.00 44.75 4.46
23 24 1.971167 GCAACTCCAATGCGGGTCA 60.971 57.895 0.00 0.00 33.57 4.02
24 25 1.875963 CAACTCCAATGCGGGTCAC 59.124 57.895 0.00 0.00 34.36 3.67
25 26 1.303317 AACTCCAATGCGGGTCACC 60.303 57.895 0.00 0.00 34.36 4.02
26 27 2.063015 AACTCCAATGCGGGTCACCA 62.063 55.000 0.00 0.00 36.13 4.17
27 28 1.303236 CTCCAATGCGGGTCACCAA 60.303 57.895 0.00 0.00 36.13 3.67
28 29 0.893270 CTCCAATGCGGGTCACCAAA 60.893 55.000 0.00 0.00 36.13 3.28
29 30 0.251564 TCCAATGCGGGTCACCAAAT 60.252 50.000 0.00 0.00 36.13 2.32
30 31 0.173255 CCAATGCGGGTCACCAAATC 59.827 55.000 0.00 0.00 36.13 2.17
31 32 0.179166 CAATGCGGGTCACCAAATCG 60.179 55.000 0.00 0.00 36.13 3.34
32 33 0.322098 AATGCGGGTCACCAAATCGA 60.322 50.000 0.00 0.00 36.13 3.59
33 34 1.024579 ATGCGGGTCACCAAATCGAC 61.025 55.000 0.00 0.00 36.13 4.20
36 37 4.687464 GGTCACCAAATCGACCGT 57.313 55.556 0.00 0.00 42.19 4.83
37 38 3.818586 GGTCACCAAATCGACCGTA 57.181 52.632 0.00 0.00 42.19 4.02
38 39 2.083167 GGTCACCAAATCGACCGTAA 57.917 50.000 0.00 0.00 42.19 3.18
39 40 2.415776 GGTCACCAAATCGACCGTAAA 58.584 47.619 0.00 0.00 42.19 2.01
40 41 3.004862 GGTCACCAAATCGACCGTAAAT 58.995 45.455 0.00 0.00 42.19 1.40
41 42 3.181514 GGTCACCAAATCGACCGTAAATG 60.182 47.826 0.00 0.00 42.19 2.32
42 43 3.434299 GTCACCAAATCGACCGTAAATGT 59.566 43.478 0.00 0.00 0.00 2.71
43 44 4.066490 TCACCAAATCGACCGTAAATGTT 58.934 39.130 0.00 0.00 0.00 2.71
44 45 4.515944 TCACCAAATCGACCGTAAATGTTT 59.484 37.500 0.00 0.00 0.00 2.83
45 46 4.615121 CACCAAATCGACCGTAAATGTTTG 59.385 41.667 0.00 0.00 0.00 2.93
46 47 4.515944 ACCAAATCGACCGTAAATGTTTGA 59.484 37.500 4.39 0.00 0.00 2.69
47 48 5.008811 ACCAAATCGACCGTAAATGTTTGAA 59.991 36.000 4.39 0.00 0.00 2.69
48 49 5.341196 CCAAATCGACCGTAAATGTTTGAAC 59.659 40.000 4.39 0.00 0.00 3.18
49 50 5.934935 AATCGACCGTAAATGTTTGAACT 57.065 34.783 0.00 0.00 0.00 3.01
50 51 7.292292 CAAATCGACCGTAAATGTTTGAACTA 58.708 34.615 0.00 0.00 0.00 2.24
51 52 7.424227 AATCGACCGTAAATGTTTGAACTAA 57.576 32.000 0.00 0.00 0.00 2.24
52 53 6.841443 TCGACCGTAAATGTTTGAACTAAA 57.159 33.333 0.00 0.00 0.00 1.85
64 65 6.864560 GTTTGAACTAAACACTCCAAACAC 57.135 37.500 0.00 0.00 46.29 3.32
65 66 6.617879 GTTTGAACTAAACACTCCAAACACT 58.382 36.000 0.00 0.00 46.29 3.55
66 67 6.431198 TTGAACTAAACACTCCAAACACTC 57.569 37.500 0.00 0.00 0.00 3.51
67 68 5.741011 TGAACTAAACACTCCAAACACTCT 58.259 37.500 0.00 0.00 0.00 3.24
68 69 6.177610 TGAACTAAACACTCCAAACACTCTT 58.822 36.000 0.00 0.00 0.00 2.85
69 70 7.332557 TGAACTAAACACTCCAAACACTCTTA 58.667 34.615 0.00 0.00 0.00 2.10
70 71 7.494625 TGAACTAAACACTCCAAACACTCTTAG 59.505 37.037 0.00 0.00 0.00 2.18
71 72 5.758784 ACTAAACACTCCAAACACTCTTAGC 59.241 40.000 0.00 0.00 0.00 3.09
72 73 3.127425 ACACTCCAAACACTCTTAGCC 57.873 47.619 0.00 0.00 0.00 3.93
73 74 2.438021 ACACTCCAAACACTCTTAGCCA 59.562 45.455 0.00 0.00 0.00 4.75
74 75 3.073062 ACACTCCAAACACTCTTAGCCAT 59.927 43.478 0.00 0.00 0.00 4.40
75 76 3.686726 CACTCCAAACACTCTTAGCCATC 59.313 47.826 0.00 0.00 0.00 3.51
76 77 3.274288 CTCCAAACACTCTTAGCCATCC 58.726 50.000 0.00 0.00 0.00 3.51
77 78 2.642311 TCCAAACACTCTTAGCCATCCA 59.358 45.455 0.00 0.00 0.00 3.41
78 79 3.073798 TCCAAACACTCTTAGCCATCCAA 59.926 43.478 0.00 0.00 0.00 3.53
79 80 3.191371 CCAAACACTCTTAGCCATCCAAC 59.809 47.826 0.00 0.00 0.00 3.77
80 81 2.386661 ACACTCTTAGCCATCCAACG 57.613 50.000 0.00 0.00 0.00 4.10
81 82 1.899814 ACACTCTTAGCCATCCAACGA 59.100 47.619 0.00 0.00 0.00 3.85
82 83 2.271800 CACTCTTAGCCATCCAACGAC 58.728 52.381 0.00 0.00 0.00 4.34
83 84 2.093973 CACTCTTAGCCATCCAACGACT 60.094 50.000 0.00 0.00 0.00 4.18
84 85 2.093973 ACTCTTAGCCATCCAACGACTG 60.094 50.000 0.00 0.00 0.00 3.51
85 86 1.009829 CTTAGCCATCCAACGACTGC 58.990 55.000 0.00 0.00 0.00 4.40
86 87 0.392461 TTAGCCATCCAACGACTGCC 60.392 55.000 0.00 0.00 0.00 4.85
87 88 1.549243 TAGCCATCCAACGACTGCCA 61.549 55.000 0.00 0.00 0.00 4.92
88 89 2.690778 GCCATCCAACGACTGCCAC 61.691 63.158 0.00 0.00 0.00 5.01
89 90 2.040544 CCATCCAACGACTGCCACC 61.041 63.158 0.00 0.00 0.00 4.61
90 91 1.302431 CATCCAACGACTGCCACCA 60.302 57.895 0.00 0.00 0.00 4.17
91 92 0.888736 CATCCAACGACTGCCACCAA 60.889 55.000 0.00 0.00 0.00 3.67
92 93 0.179004 ATCCAACGACTGCCACCAAA 60.179 50.000 0.00 0.00 0.00 3.28
93 94 0.394488 TCCAACGACTGCCACCAAAA 60.394 50.000 0.00 0.00 0.00 2.44
94 95 0.673437 CCAACGACTGCCACCAAAAT 59.327 50.000 0.00 0.00 0.00 1.82
95 96 1.068434 CCAACGACTGCCACCAAAATT 59.932 47.619 0.00 0.00 0.00 1.82
96 97 2.126467 CAACGACTGCCACCAAAATTG 58.874 47.619 0.00 0.00 0.00 2.32
97 98 1.398692 ACGACTGCCACCAAAATTGT 58.601 45.000 0.00 0.00 0.00 2.71
98 99 1.336755 ACGACTGCCACCAAAATTGTC 59.663 47.619 0.00 0.00 0.00 3.18
99 100 1.335872 CGACTGCCACCAAAATTGTCC 60.336 52.381 0.00 0.00 0.00 4.02
100 101 0.673437 ACTGCCACCAAAATTGTCCG 59.327 50.000 0.00 0.00 0.00 4.79
101 102 0.038343 CTGCCACCAAAATTGTCCGG 60.038 55.000 0.00 0.00 0.00 5.14
102 103 0.468214 TGCCACCAAAATTGTCCGGA 60.468 50.000 0.00 0.00 0.00 5.14
103 104 0.038618 GCCACCAAAATTGTCCGGAC 60.039 55.000 28.17 28.17 0.00 4.79
104 105 1.616159 CCACCAAAATTGTCCGGACT 58.384 50.000 33.39 13.58 0.00 3.85
105 106 1.269448 CCACCAAAATTGTCCGGACTG 59.731 52.381 33.39 22.55 0.00 3.51
106 107 1.269448 CACCAAAATTGTCCGGACTGG 59.731 52.381 33.39 30.93 40.09 4.00
107 108 1.133606 ACCAAAATTGTCCGGACTGGT 60.134 47.619 30.11 30.11 39.52 4.00
108 109 1.539827 CCAAAATTGTCCGGACTGGTC 59.460 52.381 33.39 9.21 39.52 4.02
109 110 2.504367 CAAAATTGTCCGGACTGGTCT 58.496 47.619 33.39 13.90 39.52 3.85
110 111 3.558321 CCAAAATTGTCCGGACTGGTCTA 60.558 47.826 33.39 11.17 39.52 2.59
111 112 3.611766 AAATTGTCCGGACTGGTCTAG 57.388 47.619 33.39 0.00 39.52 2.43
112 113 1.486211 ATTGTCCGGACTGGTCTAGG 58.514 55.000 33.39 5.35 39.52 3.02
113 114 1.255667 TTGTCCGGACTGGTCTAGGC 61.256 60.000 33.39 5.25 39.52 3.93
114 115 1.681327 GTCCGGACTGGTCTAGGCA 60.681 63.158 27.64 0.00 35.47 4.75
115 116 1.043673 GTCCGGACTGGTCTAGGCAT 61.044 60.000 27.64 0.00 35.47 4.40
116 117 0.554305 TCCGGACTGGTCTAGGCATA 59.446 55.000 0.00 0.00 35.47 3.14
117 118 1.063492 TCCGGACTGGTCTAGGCATAA 60.063 52.381 0.00 0.00 35.47 1.90
118 119 1.341531 CCGGACTGGTCTAGGCATAAG 59.658 57.143 0.00 0.00 35.47 1.73
119 120 2.032620 CGGACTGGTCTAGGCATAAGT 58.967 52.381 0.00 0.00 35.47 2.24
120 121 3.220110 CGGACTGGTCTAGGCATAAGTA 58.780 50.000 0.00 0.00 35.47 2.24
121 122 3.635373 CGGACTGGTCTAGGCATAAGTAA 59.365 47.826 0.00 0.00 35.47 2.24
122 123 4.281182 CGGACTGGTCTAGGCATAAGTAAT 59.719 45.833 0.00 0.00 35.47 1.89
123 124 5.565045 CGGACTGGTCTAGGCATAAGTAATC 60.565 48.000 0.00 0.00 35.47 1.75
124 125 5.279556 GGACTGGTCTAGGCATAAGTAATCC 60.280 48.000 0.00 0.00 35.47 3.01
125 126 4.593634 ACTGGTCTAGGCATAAGTAATCCC 59.406 45.833 0.00 0.00 0.00 3.85
126 127 3.576982 TGGTCTAGGCATAAGTAATCCCG 59.423 47.826 0.00 0.00 0.00 5.14
127 128 3.586892 GTCTAGGCATAAGTAATCCCGC 58.413 50.000 0.00 0.00 0.00 6.13
128 129 3.006537 GTCTAGGCATAAGTAATCCCGCA 59.993 47.826 0.00 0.00 0.00 5.69
129 130 3.644265 TCTAGGCATAAGTAATCCCGCAA 59.356 43.478 0.00 0.00 0.00 4.85
130 131 3.290948 AGGCATAAGTAATCCCGCAAA 57.709 42.857 0.00 0.00 0.00 3.68
131 132 2.949644 AGGCATAAGTAATCCCGCAAAC 59.050 45.455 0.00 0.00 0.00 2.93
132 133 2.034179 GGCATAAGTAATCCCGCAAACC 59.966 50.000 0.00 0.00 0.00 3.27
133 134 2.286772 GCATAAGTAATCCCGCAAACCG 60.287 50.000 0.00 0.00 0.00 4.44
142 143 2.656973 CGCAAACCGGCACCAAAC 60.657 61.111 0.00 0.00 0.00 2.93
143 144 2.496817 GCAAACCGGCACCAAACA 59.503 55.556 0.00 0.00 0.00 2.83
144 145 1.068921 GCAAACCGGCACCAAACAT 59.931 52.632 0.00 0.00 0.00 2.71
145 146 0.531753 GCAAACCGGCACCAAACATT 60.532 50.000 0.00 0.00 0.00 2.71
146 147 1.216122 CAAACCGGCACCAAACATTG 58.784 50.000 0.00 0.00 0.00 2.82
155 156 4.459199 CAAACATTGGGGAGGGGG 57.541 61.111 0.00 0.00 0.00 5.40
170 171 3.539842 GGGGGAGTCTCGATGACC 58.460 66.667 10.24 1.61 46.46 4.02
171 172 1.075896 GGGGGAGTCTCGATGACCT 60.076 63.158 10.24 1.08 46.46 3.85
172 173 1.110518 GGGGGAGTCTCGATGACCTC 61.111 65.000 10.24 7.95 46.46 3.85
173 174 1.110518 GGGGAGTCTCGATGACCTCC 61.111 65.000 16.15 16.15 46.46 4.30
174 175 0.395862 GGGAGTCTCGATGACCTCCA 60.396 60.000 20.77 0.00 46.46 3.86
175 176 0.741915 GGAGTCTCGATGACCTCCAC 59.258 60.000 17.78 6.78 46.46 4.02
176 177 1.464734 GAGTCTCGATGACCTCCACA 58.535 55.000 10.24 0.00 46.46 4.17
177 178 2.028130 GAGTCTCGATGACCTCCACAT 58.972 52.381 10.24 0.00 46.46 3.21
178 179 2.028130 AGTCTCGATGACCTCCACATC 58.972 52.381 10.24 0.00 46.46 3.06
182 183 3.669354 GATGACCTCCACATCGGAC 57.331 57.895 0.00 0.00 39.64 4.79
183 184 0.249073 GATGACCTCCACATCGGACG 60.249 60.000 0.00 0.00 39.64 4.79
184 185 2.202756 GACCTCCACATCGGACGC 60.203 66.667 0.00 0.00 39.64 5.19
185 186 3.718210 GACCTCCACATCGGACGCC 62.718 68.421 0.00 0.00 39.64 5.68
196 197 4.980805 GGACGCCGGACTGCAACA 62.981 66.667 5.05 0.00 0.00 3.33
197 198 3.712881 GACGCCGGACTGCAACAC 61.713 66.667 5.05 0.00 0.00 3.32
201 202 4.263572 CCGGACTGCAACACCCCA 62.264 66.667 0.00 0.00 0.00 4.96
202 203 2.669569 CGGACTGCAACACCCCAG 60.670 66.667 0.00 0.00 35.26 4.45
203 204 2.836154 GGACTGCAACACCCCAGA 59.164 61.111 0.00 0.00 33.40 3.86
204 205 1.380302 GGACTGCAACACCCCAGAT 59.620 57.895 0.00 0.00 33.40 2.90
205 206 0.962356 GGACTGCAACACCCCAGATG 60.962 60.000 0.00 0.00 33.40 2.90
206 207 0.250901 GACTGCAACACCCCAGATGT 60.251 55.000 0.00 0.00 33.40 3.06
207 208 0.185901 ACTGCAACACCCCAGATGTT 59.814 50.000 0.00 0.00 40.95 2.71
208 209 1.331214 CTGCAACACCCCAGATGTTT 58.669 50.000 0.00 0.00 38.22 2.83
209 210 1.000060 CTGCAACACCCCAGATGTTTG 60.000 52.381 0.00 0.00 38.22 2.93
210 211 1.327303 GCAACACCCCAGATGTTTGA 58.673 50.000 0.00 0.00 38.22 2.69
211 212 1.895131 GCAACACCCCAGATGTTTGAT 59.105 47.619 0.00 0.00 38.22 2.57
212 213 2.353011 GCAACACCCCAGATGTTTGATG 60.353 50.000 0.00 0.00 38.22 3.07
213 214 3.156293 CAACACCCCAGATGTTTGATGA 58.844 45.455 0.00 0.00 38.22 2.92
214 215 3.077484 ACACCCCAGATGTTTGATGAG 57.923 47.619 0.00 0.00 0.00 2.90
215 216 2.291153 ACACCCCAGATGTTTGATGAGG 60.291 50.000 0.00 0.00 0.00 3.86
216 217 2.025981 CACCCCAGATGTTTGATGAGGA 60.026 50.000 0.00 0.00 0.00 3.71
217 218 2.240667 ACCCCAGATGTTTGATGAGGAG 59.759 50.000 0.00 0.00 0.00 3.69
218 219 2.295885 CCCAGATGTTTGATGAGGAGC 58.704 52.381 0.00 0.00 0.00 4.70
219 220 2.356432 CCCAGATGTTTGATGAGGAGCA 60.356 50.000 0.00 0.00 0.00 4.26
220 221 3.349927 CCAGATGTTTGATGAGGAGCAA 58.650 45.455 0.00 0.00 0.00 3.91
221 222 3.952323 CCAGATGTTTGATGAGGAGCAAT 59.048 43.478 0.00 0.00 0.00 3.56
222 223 4.036498 CCAGATGTTTGATGAGGAGCAATC 59.964 45.833 0.00 0.00 0.00 2.67
223 224 3.875727 AGATGTTTGATGAGGAGCAATCG 59.124 43.478 0.00 0.00 0.00 3.34
224 225 3.057969 TGTTTGATGAGGAGCAATCGT 57.942 42.857 0.00 0.00 0.00 3.73
234 235 1.536284 GGAGCAATCGTAGGAGGAACG 60.536 57.143 0.00 0.00 41.64 3.95
257 258 3.057969 TGTTTGATGAGGAGCAATCGT 57.942 42.857 0.00 0.00 0.00 3.73
264 265 1.063942 TGAGGAGCAATCGTAGGAGGA 60.064 52.381 0.00 0.00 0.00 3.71
295 296 2.445654 GCCTGGGAGGAGGAGGAG 60.446 72.222 0.00 0.00 37.67 3.69
296 297 2.285180 CCTGGGAGGAGGAGGAGG 59.715 72.222 0.00 0.00 37.67 4.30
297 298 2.328589 CCTGGGAGGAGGAGGAGGA 61.329 68.421 0.00 0.00 37.67 3.71
320 321 0.105039 ACTTATGCGCTAGAGGCCAC 59.895 55.000 9.73 0.00 37.74 5.01
335 336 2.579201 CACGCGGAAGGATCCTGT 59.421 61.111 17.02 5.32 44.17 4.00
341 342 1.103803 CGGAAGGATCCTGTCTTCGA 58.896 55.000 17.02 0.00 44.17 3.71
346 347 1.686052 AGGATCCTGTCTTCGATGAGC 59.314 52.381 15.29 0.00 0.00 4.26
361 362 0.608035 TGAGCACCCGGTTTGGAATC 60.608 55.000 0.00 0.00 42.00 2.52
375 376 5.641636 GGTTTGGAATCACAAAACACACTTT 59.358 36.000 7.16 0.00 45.13 2.66
393 394 6.918892 CACTTTATTGTGTGGAATATCCGA 57.081 37.500 0.00 0.00 40.17 4.55
413 414 3.406764 GACATGGCTCTATGTTGATCCC 58.593 50.000 0.00 0.00 41.15 3.85
414 415 3.051581 ACATGGCTCTATGTTGATCCCT 58.948 45.455 0.00 0.00 38.05 4.20
424 425 7.308450 TCTATGTTGATCCCTTATGAGAAGG 57.692 40.000 0.00 0.00 37.17 3.46
447 448 1.194781 AGAGACCTCGCCCACACAAT 61.195 55.000 0.00 0.00 34.09 2.71
494 495 2.722487 GACGATGACGGCTCGGAT 59.278 61.111 13.41 0.00 45.04 4.18
495 496 1.947013 GACGATGACGGCTCGGATA 59.053 57.895 13.41 0.00 45.04 2.59
497 498 0.818445 ACGATGACGGCTCGGATAGT 60.818 55.000 13.41 0.00 44.46 2.12
536 537 3.394836 GCCTTGGCCTCGGAGACT 61.395 66.667 14.16 0.00 0.00 3.24
541 542 0.970937 TTGGCCTCGGAGACTACCTG 60.971 60.000 6.58 0.00 0.00 4.00
548 549 0.323542 CGGAGACTACCTGTCCACCT 60.324 60.000 0.00 0.00 46.46 4.00
552 553 3.117436 GGAGACTACCTGTCCACCTCTAT 60.117 52.174 0.00 0.00 46.46 1.98
562 565 0.103208 CCACCTCTATGAGCACCGTC 59.897 60.000 0.00 0.00 0.00 4.79
568 571 4.762765 ACCTCTATGAGCACCGTCTAATAG 59.237 45.833 0.00 0.00 31.47 1.73
574 577 2.379972 AGCACCGTCTAATAGCTCACT 58.620 47.619 0.00 0.00 0.00 3.41
584 588 7.856894 CCGTCTAATAGCTCACTAGTTTTAGTC 59.143 40.741 0.00 0.00 38.05 2.59
587 591 9.682465 TCTAATAGCTCACTAGTTTTAGTCAGA 57.318 33.333 0.00 0.00 38.05 3.27
593 597 8.254508 AGCTCACTAGTTTTAGTCAGAATTAGG 58.745 37.037 0.00 0.00 38.05 2.69
666 705 7.139896 ACCAAACTTTGTTTGAATTTTGTCC 57.860 32.000 20.52 0.00 31.22 4.02
667 706 6.128418 ACCAAACTTTGTTTGAATTTTGTCCG 60.128 34.615 20.52 6.14 31.22 4.79
668 707 6.128418 CCAAACTTTGTTTGAATTTTGTCCGT 60.128 34.615 20.52 0.00 31.22 4.69
669 708 7.294473 CAAACTTTGTTTGAATTTTGTCCGTT 58.706 30.769 15.56 0.00 29.64 4.44
670 709 7.428282 AACTTTGTTTGAATTTTGTCCGTTT 57.572 28.000 0.00 0.00 0.00 3.60
671 710 7.428282 ACTTTGTTTGAATTTTGTCCGTTTT 57.572 28.000 0.00 0.00 0.00 2.43
672 711 7.514805 ACTTTGTTTGAATTTTGTCCGTTTTC 58.485 30.769 0.00 0.00 0.00 2.29
673 712 7.386573 ACTTTGTTTGAATTTTGTCCGTTTTCT 59.613 29.630 0.00 0.00 0.00 2.52
674 713 7.659652 TTGTTTGAATTTTGTCCGTTTTCTT 57.340 28.000 0.00 0.00 0.00 2.52
675 714 7.659652 TGTTTGAATTTTGTCCGTTTTCTTT 57.340 28.000 0.00 0.00 0.00 2.52
676 715 7.734554 TGTTTGAATTTTGTCCGTTTTCTTTC 58.265 30.769 0.00 0.00 0.00 2.62
677 716 7.385205 TGTTTGAATTTTGTCCGTTTTCTTTCA 59.615 29.630 0.00 0.00 0.00 2.69
678 717 8.387354 GTTTGAATTTTGTCCGTTTTCTTTCAT 58.613 29.630 0.00 0.00 0.00 2.57
679 718 8.485976 TTGAATTTTGTCCGTTTTCTTTCATT 57.514 26.923 0.00 0.00 0.00 2.57
680 719 8.485976 TGAATTTTGTCCGTTTTCTTTCATTT 57.514 26.923 0.00 0.00 0.00 2.32
681 720 8.940952 TGAATTTTGTCCGTTTTCTTTCATTTT 58.059 25.926 0.00 0.00 0.00 1.82
682 721 9.420966 GAATTTTGTCCGTTTTCTTTCATTTTC 57.579 29.630 0.00 0.00 0.00 2.29
683 722 6.561945 TTTGTCCGTTTTCTTTCATTTTCG 57.438 33.333 0.00 0.00 0.00 3.46
684 723 5.238006 TGTCCGTTTTCTTTCATTTTCGT 57.762 34.783 0.00 0.00 0.00 3.85
685 724 5.267776 TGTCCGTTTTCTTTCATTTTCGTC 58.732 37.500 0.00 0.00 0.00 4.20
686 725 5.065474 TGTCCGTTTTCTTTCATTTTCGTCT 59.935 36.000 0.00 0.00 0.00 4.18
687 726 6.258287 TGTCCGTTTTCTTTCATTTTCGTCTA 59.742 34.615 0.00 0.00 0.00 2.59
688 727 7.041644 TGTCCGTTTTCTTTCATTTTCGTCTAT 60.042 33.333 0.00 0.00 0.00 1.98
689 728 7.801783 GTCCGTTTTCTTTCATTTTCGTCTATT 59.198 33.333 0.00 0.00 0.00 1.73
690 729 8.347035 TCCGTTTTCTTTCATTTTCGTCTATTT 58.653 29.630 0.00 0.00 0.00 1.40
691 730 8.417176 CCGTTTTCTTTCATTTTCGTCTATTTG 58.583 33.333 0.00 0.00 0.00 2.32
692 731 8.953990 CGTTTTCTTTCATTTTCGTCTATTTGT 58.046 29.630 0.00 0.00 0.00 2.83
694 733 7.851822 TTCTTTCATTTTCGTCTATTTGTGC 57.148 32.000 0.00 0.00 0.00 4.57
695 734 6.077197 TCTTTCATTTTCGTCTATTTGTGCG 58.923 36.000 0.00 0.00 0.00 5.34
696 735 5.351233 TTCATTTTCGTCTATTTGTGCGT 57.649 34.783 0.00 0.00 0.00 5.24
697 736 4.953269 TCATTTTCGTCTATTTGTGCGTC 58.047 39.130 0.00 0.00 0.00 5.19
702 741 1.705256 GTCTATTTGTGCGTCGTCCA 58.295 50.000 0.00 0.00 0.00 4.02
713 752 3.494626 GTGCGTCGTCCATTTCATATGAT 59.505 43.478 6.17 0.00 0.00 2.45
717 756 4.556233 GTCGTCCATTTCATATGATCCGA 58.444 43.478 6.17 5.68 0.00 4.55
719 758 4.988540 TCGTCCATTTCATATGATCCGAAC 59.011 41.667 6.17 2.58 0.00 3.95
722 761 6.605849 GTCCATTTCATATGATCCGAACATG 58.394 40.000 6.17 0.00 0.00 3.21
738 777 2.783135 ACATGTGGTGACTGATTGGAC 58.217 47.619 0.00 0.00 0.00 4.02
741 780 1.623311 TGTGGTGACTGATTGGACGAT 59.377 47.619 0.00 0.00 0.00 3.73
744 783 1.656652 GTGACTGATTGGACGATGGG 58.343 55.000 0.00 0.00 0.00 4.00
745 784 0.107703 TGACTGATTGGACGATGGGC 60.108 55.000 0.00 0.00 0.00 5.36
746 785 0.107703 GACTGATTGGACGATGGGCA 60.108 55.000 0.00 0.00 0.00 5.36
747 786 0.548031 ACTGATTGGACGATGGGCAT 59.452 50.000 0.00 0.00 0.00 4.40
748 787 1.064463 ACTGATTGGACGATGGGCATT 60.064 47.619 0.00 0.00 0.00 3.56
749 788 1.605710 CTGATTGGACGATGGGCATTC 59.394 52.381 0.00 0.00 0.00 2.67
750 789 0.954452 GATTGGACGATGGGCATTCC 59.046 55.000 0.00 0.00 0.00 3.01
751 790 0.819259 ATTGGACGATGGGCATTCCG 60.819 55.000 0.00 0.00 38.76 4.30
752 791 3.279875 GGACGATGGGCATTCCGC 61.280 66.667 0.00 0.00 38.76 5.54
762 801 3.803082 CATTCCGCCCGCTGTGTG 61.803 66.667 0.00 0.00 0.00 3.82
778 817 4.093261 GCTGTGTGCAAAACATTTTGTTCT 59.907 37.500 16.33 0.00 46.92 3.01
795 834 6.844097 TTGTTCTATAAATTTGGTGGTCCC 57.156 37.500 0.00 0.00 0.00 4.46
818 857 2.054232 TAGAGTTGCCCTAGAGGACG 57.946 55.000 0.00 0.00 38.24 4.79
826 865 2.240279 GCCCTAGAGGACGATGTATGT 58.760 52.381 0.00 0.00 38.24 2.29
833 872 7.255836 CCCTAGAGGACGATGTATGTGATTTAA 60.256 40.741 0.00 0.00 38.24 1.52
838 877 5.332355 GGACGATGTATGTGATTTAAGACGC 60.332 44.000 0.00 0.00 0.00 5.19
846 885 0.177373 GATTTAAGACGCCGGGACCT 59.823 55.000 2.18 0.00 0.00 3.85
849 888 1.035139 TTAAGACGCCGGGACCTATC 58.965 55.000 2.18 0.00 0.00 2.08
874 913 5.446143 AACAAATTTGATGAGCCGTGTTA 57.554 34.783 24.64 0.00 0.00 2.41
893 937 4.768448 TGTTAGATAGAAGTGTTCGGACCA 59.232 41.667 0.00 0.00 34.02 4.02
894 938 5.421056 TGTTAGATAGAAGTGTTCGGACCAT 59.579 40.000 0.00 0.00 34.02 3.55
895 939 4.657436 AGATAGAAGTGTTCGGACCATC 57.343 45.455 0.00 0.00 34.02 3.51
896 940 3.385111 AGATAGAAGTGTTCGGACCATCC 59.615 47.826 0.00 0.00 34.02 3.51
912 956 3.951680 ACCATCCGATCCAAATGTTTACC 59.048 43.478 0.00 0.00 0.00 2.85
948 999 5.566774 CGGTTTAACTGAGTTACGAGTACAG 59.433 44.000 4.23 0.00 35.14 2.74
976 1030 1.661112 GAAAGACCGAAGATCCAAGCG 59.339 52.381 0.00 0.00 0.00 4.68
1611 1667 0.700564 AGATGGTTGGTGATGGTGCT 59.299 50.000 0.00 0.00 0.00 4.40
1630 1686 2.978010 GGGTTGACCGTGCCACAG 60.978 66.667 0.00 0.00 36.71 3.66
2284 2340 4.528674 CAGAATCTGCGGACCTGG 57.471 61.111 15.52 0.00 0.00 4.45
2317 2373 2.783135 ACATCCACTGTTACTTGCTGG 58.217 47.619 0.00 0.00 32.90 4.85
2547 2603 1.890510 GCCGAACACCGTGACCTTT 60.891 57.895 5.28 0.00 36.31 3.11
2598 2654 1.329256 GCTGGATAGACGAAGGCCTA 58.671 55.000 5.16 0.00 0.00 3.93
2599 2655 1.687123 GCTGGATAGACGAAGGCCTAA 59.313 52.381 5.16 0.00 0.00 2.69
3008 3064 5.674008 CAGAACAGCGATGTTATAGAATGC 58.326 41.667 20.45 4.21 31.35 3.56
3136 3195 3.490155 TGTTTTGATGCTGCAACGATTTG 59.510 39.130 6.36 0.00 35.62 2.32
3137 3196 2.350899 TTGATGCTGCAACGATTTGG 57.649 45.000 6.36 0.00 32.81 3.28
3525 3921 7.281549 CCCTTATAACTGGGTATGTGTTAACAC 59.718 40.741 28.13 28.13 41.45 3.32
3684 4080 2.430367 GTGGTGGTGGACAGGGTC 59.570 66.667 0.00 0.00 0.00 4.46
3729 4125 0.828762 ATTTCACAGCCTGCTTGCCA 60.829 50.000 0.00 0.00 0.00 4.92
3747 4143 2.105128 GCTGACGAGTGCCGCTAT 59.895 61.111 0.00 0.00 43.32 2.97
3831 4227 3.065306 TGGTAACACCTGCTCGGG 58.935 61.111 0.00 0.00 46.17 5.14
3851 4247 6.574350 TCGGGTCACAAATATTGTTTGTTTT 58.426 32.000 8.60 0.00 43.23 2.43
3970 4400 6.869695 TCTGCATGTTAGATCAATGCATTTT 58.130 32.000 19.25 0.00 45.57 1.82
3973 4403 5.277154 GCATGTTAGATCAATGCATTTTGGC 60.277 40.000 9.83 0.00 38.08 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.679640 CCGCATTGGAGTTGCCCTTA 60.680 55.000 0.00 0.00 42.00 2.69
1 2 1.978617 CCGCATTGGAGTTGCCCTT 60.979 57.895 0.00 0.00 42.00 3.95
2 3 2.361610 CCGCATTGGAGTTGCCCT 60.362 61.111 0.00 0.00 42.00 5.19
3 4 3.451894 CCCGCATTGGAGTTGCCC 61.452 66.667 0.00 0.00 42.00 5.36
4 5 2.676471 ACCCGCATTGGAGTTGCC 60.676 61.111 0.00 0.00 42.00 4.52
5 6 1.971167 TGACCCGCATTGGAGTTGC 60.971 57.895 0.00 0.00 42.00 4.17
6 7 1.586154 GGTGACCCGCATTGGAGTTG 61.586 60.000 0.00 0.00 42.00 3.16
7 8 1.303317 GGTGACCCGCATTGGAGTT 60.303 57.895 0.00 0.00 42.00 3.01
8 9 2.063015 TTGGTGACCCGCATTGGAGT 62.063 55.000 0.00 0.00 42.00 3.85
9 10 0.893270 TTTGGTGACCCGCATTGGAG 60.893 55.000 0.00 0.00 42.00 3.86
10 11 0.251564 ATTTGGTGACCCGCATTGGA 60.252 50.000 0.00 0.00 42.00 3.53
11 12 0.173255 GATTTGGTGACCCGCATTGG 59.827 55.000 0.00 0.00 37.55 3.16
12 13 0.179166 CGATTTGGTGACCCGCATTG 60.179 55.000 0.00 0.00 0.00 2.82
13 14 0.322098 TCGATTTGGTGACCCGCATT 60.322 50.000 0.00 0.00 0.00 3.56
14 15 1.024579 GTCGATTTGGTGACCCGCAT 61.025 55.000 0.00 0.00 0.00 4.73
15 16 1.669760 GTCGATTTGGTGACCCGCA 60.670 57.895 0.00 0.00 0.00 5.69
16 17 3.174788 GTCGATTTGGTGACCCGC 58.825 61.111 0.00 0.00 0.00 6.13
20 21 3.434299 ACATTTACGGTCGATTTGGTGAC 59.566 43.478 0.00 0.00 0.00 3.67
21 22 3.666274 ACATTTACGGTCGATTTGGTGA 58.334 40.909 0.00 0.00 0.00 4.02
22 23 4.413495 AACATTTACGGTCGATTTGGTG 57.587 40.909 0.00 0.00 0.00 4.17
23 24 4.515944 TCAAACATTTACGGTCGATTTGGT 59.484 37.500 0.00 0.00 0.00 3.67
24 25 5.037015 TCAAACATTTACGGTCGATTTGG 57.963 39.130 0.00 0.00 0.00 3.28
25 26 6.140110 AGTTCAAACATTTACGGTCGATTTG 58.860 36.000 0.00 0.00 0.00 2.32
26 27 6.308371 AGTTCAAACATTTACGGTCGATTT 57.692 33.333 0.00 0.00 0.00 2.17
27 28 5.934935 AGTTCAAACATTTACGGTCGATT 57.065 34.783 0.00 0.00 0.00 3.34
28 29 7.293018 GTTTAGTTCAAACATTTACGGTCGAT 58.707 34.615 0.00 0.00 45.01 3.59
29 30 6.648502 GTTTAGTTCAAACATTTACGGTCGA 58.351 36.000 0.00 0.00 45.01 4.20
30 31 6.883918 GTTTAGTTCAAACATTTACGGTCG 57.116 37.500 0.00 0.00 45.01 4.79
42 43 6.657541 AGAGTGTTTGGAGTGTTTAGTTCAAA 59.342 34.615 0.00 0.00 33.32 2.69
43 44 6.177610 AGAGTGTTTGGAGTGTTTAGTTCAA 58.822 36.000 0.00 0.00 0.00 2.69
44 45 5.741011 AGAGTGTTTGGAGTGTTTAGTTCA 58.259 37.500 0.00 0.00 0.00 3.18
45 46 6.679327 AAGAGTGTTTGGAGTGTTTAGTTC 57.321 37.500 0.00 0.00 0.00 3.01
46 47 6.260271 GCTAAGAGTGTTTGGAGTGTTTAGTT 59.740 38.462 0.00 0.00 0.00 2.24
47 48 5.758784 GCTAAGAGTGTTTGGAGTGTTTAGT 59.241 40.000 0.00 0.00 0.00 2.24
48 49 5.179555 GGCTAAGAGTGTTTGGAGTGTTTAG 59.820 44.000 0.00 0.00 0.00 1.85
49 50 5.061179 GGCTAAGAGTGTTTGGAGTGTTTA 58.939 41.667 0.00 0.00 0.00 2.01
50 51 3.883489 GGCTAAGAGTGTTTGGAGTGTTT 59.117 43.478 0.00 0.00 0.00 2.83
51 52 3.118038 TGGCTAAGAGTGTTTGGAGTGTT 60.118 43.478 0.00 0.00 0.00 3.32
52 53 2.438021 TGGCTAAGAGTGTTTGGAGTGT 59.562 45.455 0.00 0.00 0.00 3.55
53 54 3.126001 TGGCTAAGAGTGTTTGGAGTG 57.874 47.619 0.00 0.00 0.00 3.51
54 55 3.307762 GGATGGCTAAGAGTGTTTGGAGT 60.308 47.826 0.00 0.00 0.00 3.85
55 56 3.274288 GGATGGCTAAGAGTGTTTGGAG 58.726 50.000 0.00 0.00 0.00 3.86
56 57 2.642311 TGGATGGCTAAGAGTGTTTGGA 59.358 45.455 0.00 0.00 0.00 3.53
57 58 3.071874 TGGATGGCTAAGAGTGTTTGG 57.928 47.619 0.00 0.00 0.00 3.28
58 59 3.120199 CGTTGGATGGCTAAGAGTGTTTG 60.120 47.826 0.00 0.00 0.00 2.93
59 60 3.074412 CGTTGGATGGCTAAGAGTGTTT 58.926 45.455 0.00 0.00 0.00 2.83
60 61 2.301870 TCGTTGGATGGCTAAGAGTGTT 59.698 45.455 0.00 0.00 0.00 3.32
61 62 1.899814 TCGTTGGATGGCTAAGAGTGT 59.100 47.619 0.00 0.00 0.00 3.55
62 63 2.093973 AGTCGTTGGATGGCTAAGAGTG 60.094 50.000 0.00 0.00 0.00 3.51
63 64 2.093973 CAGTCGTTGGATGGCTAAGAGT 60.094 50.000 0.00 0.00 0.00 3.24
64 65 2.544685 CAGTCGTTGGATGGCTAAGAG 58.455 52.381 0.00 0.00 0.00 2.85
65 66 1.405526 GCAGTCGTTGGATGGCTAAGA 60.406 52.381 0.00 0.00 0.00 2.10
66 67 1.009829 GCAGTCGTTGGATGGCTAAG 58.990 55.000 0.00 0.00 0.00 2.18
67 68 0.392461 GGCAGTCGTTGGATGGCTAA 60.392 55.000 0.00 0.00 36.63 3.09
68 69 1.220749 GGCAGTCGTTGGATGGCTA 59.779 57.895 0.00 0.00 36.63 3.93
69 70 2.045926 GGCAGTCGTTGGATGGCT 60.046 61.111 0.00 0.00 36.63 4.75
70 71 2.359850 TGGCAGTCGTTGGATGGC 60.360 61.111 0.00 0.00 39.75 4.40
71 72 2.040544 GGTGGCAGTCGTTGGATGG 61.041 63.158 0.00 0.00 0.00 3.51
72 73 0.888736 TTGGTGGCAGTCGTTGGATG 60.889 55.000 0.00 0.00 0.00 3.51
73 74 0.179004 TTTGGTGGCAGTCGTTGGAT 60.179 50.000 0.00 0.00 0.00 3.41
74 75 0.394488 TTTTGGTGGCAGTCGTTGGA 60.394 50.000 0.00 0.00 0.00 3.53
75 76 0.673437 ATTTTGGTGGCAGTCGTTGG 59.327 50.000 0.00 0.00 0.00 3.77
76 77 2.126467 CAATTTTGGTGGCAGTCGTTG 58.874 47.619 0.00 0.00 0.00 4.10
77 78 1.754226 ACAATTTTGGTGGCAGTCGTT 59.246 42.857 0.00 0.00 0.00 3.85
78 79 1.336755 GACAATTTTGGTGGCAGTCGT 59.663 47.619 0.00 0.00 0.00 4.34
79 80 1.335872 GGACAATTTTGGTGGCAGTCG 60.336 52.381 0.00 0.00 0.00 4.18
80 81 1.335872 CGGACAATTTTGGTGGCAGTC 60.336 52.381 0.00 0.00 0.00 3.51
81 82 0.673437 CGGACAATTTTGGTGGCAGT 59.327 50.000 0.00 0.00 0.00 4.40
82 83 0.038343 CCGGACAATTTTGGTGGCAG 60.038 55.000 0.00 0.00 0.00 4.85
83 84 0.468214 TCCGGACAATTTTGGTGGCA 60.468 50.000 0.00 0.00 0.00 4.92
84 85 0.038618 GTCCGGACAATTTTGGTGGC 60.039 55.000 29.75 0.00 0.00 5.01
85 86 1.269448 CAGTCCGGACAATTTTGGTGG 59.731 52.381 35.00 8.15 0.00 4.61
86 87 1.269448 CCAGTCCGGACAATTTTGGTG 59.731 52.381 35.00 21.12 36.56 4.17
87 88 1.133606 ACCAGTCCGGACAATTTTGGT 60.134 47.619 35.00 32.24 38.63 3.67
88 89 1.539827 GACCAGTCCGGACAATTTTGG 59.460 52.381 35.00 31.61 38.63 3.28
89 90 2.504367 AGACCAGTCCGGACAATTTTG 58.496 47.619 35.00 23.22 38.63 2.44
90 91 2.951229 AGACCAGTCCGGACAATTTT 57.049 45.000 35.00 12.66 38.63 1.82
91 92 2.236395 CCTAGACCAGTCCGGACAATTT 59.764 50.000 35.00 16.82 38.63 1.82
92 93 1.831736 CCTAGACCAGTCCGGACAATT 59.168 52.381 35.00 18.69 38.63 2.32
93 94 1.486211 CCTAGACCAGTCCGGACAAT 58.514 55.000 35.00 20.19 38.63 2.71
94 95 1.255667 GCCTAGACCAGTCCGGACAA 61.256 60.000 35.00 12.56 38.63 3.18
95 96 1.681327 GCCTAGACCAGTCCGGACA 60.681 63.158 35.00 13.49 38.63 4.02
96 97 1.043673 ATGCCTAGACCAGTCCGGAC 61.044 60.000 27.67 27.67 38.63 4.79
97 98 0.554305 TATGCCTAGACCAGTCCGGA 59.446 55.000 0.00 0.00 38.63 5.14
98 99 1.341531 CTTATGCCTAGACCAGTCCGG 59.658 57.143 0.00 0.00 42.50 5.14
99 100 2.032620 ACTTATGCCTAGACCAGTCCG 58.967 52.381 0.00 0.00 0.00 4.79
100 101 5.279556 GGATTACTTATGCCTAGACCAGTCC 60.280 48.000 0.00 0.00 0.00 3.85
101 102 5.279556 GGGATTACTTATGCCTAGACCAGTC 60.280 48.000 0.00 0.00 41.33 3.51
102 103 4.593634 GGGATTACTTATGCCTAGACCAGT 59.406 45.833 0.00 0.00 41.33 4.00
103 104 4.322049 CGGGATTACTTATGCCTAGACCAG 60.322 50.000 0.00 0.00 42.31 4.00
104 105 3.576982 CGGGATTACTTATGCCTAGACCA 59.423 47.826 0.00 0.00 42.31 4.02
105 106 3.616802 GCGGGATTACTTATGCCTAGACC 60.617 52.174 0.00 0.00 42.31 3.85
106 107 3.006537 TGCGGGATTACTTATGCCTAGAC 59.993 47.826 0.00 0.00 42.31 2.59
107 108 3.236047 TGCGGGATTACTTATGCCTAGA 58.764 45.455 0.00 0.00 42.31 2.43
108 109 3.678056 TGCGGGATTACTTATGCCTAG 57.322 47.619 0.00 0.00 42.31 3.02
109 110 4.131596 GTTTGCGGGATTACTTATGCCTA 58.868 43.478 0.00 0.00 42.31 3.93
110 111 2.949644 GTTTGCGGGATTACTTATGCCT 59.050 45.455 0.00 0.00 42.31 4.75
111 112 2.034179 GGTTTGCGGGATTACTTATGCC 59.966 50.000 0.00 0.00 41.14 4.40
112 113 2.286772 CGGTTTGCGGGATTACTTATGC 60.287 50.000 0.00 0.00 0.00 3.14
113 114 2.289547 CCGGTTTGCGGGATTACTTATG 59.710 50.000 0.00 0.00 37.28 1.90
114 115 2.567985 CCGGTTTGCGGGATTACTTAT 58.432 47.619 0.00 0.00 37.28 1.73
115 116 2.013058 GCCGGTTTGCGGGATTACTTA 61.013 52.381 1.90 0.00 37.28 2.24
116 117 1.310216 GCCGGTTTGCGGGATTACTT 61.310 55.000 1.90 0.00 37.28 2.24
117 118 1.747745 GCCGGTTTGCGGGATTACT 60.748 57.895 1.90 0.00 37.28 2.24
118 119 2.041686 TGCCGGTTTGCGGGATTAC 61.042 57.895 1.90 0.00 37.28 1.89
119 120 2.041686 GTGCCGGTTTGCGGGATTA 61.042 57.895 1.90 0.00 37.28 1.75
120 121 3.370231 GTGCCGGTTTGCGGGATT 61.370 61.111 1.90 0.00 37.28 3.01
124 125 3.905678 TTTGGTGCCGGTTTGCGG 61.906 61.111 1.90 0.00 0.00 5.69
125 126 2.656973 GTTTGGTGCCGGTTTGCG 60.657 61.111 1.90 0.00 0.00 4.85
126 127 0.531753 AATGTTTGGTGCCGGTTTGC 60.532 50.000 1.90 0.00 0.00 3.68
127 128 1.216122 CAATGTTTGGTGCCGGTTTG 58.784 50.000 1.90 0.00 0.00 2.93
128 129 0.105778 CCAATGTTTGGTGCCGGTTT 59.894 50.000 1.90 0.00 45.93 3.27
129 130 1.745264 CCAATGTTTGGTGCCGGTT 59.255 52.632 1.90 0.00 45.93 4.44
130 131 3.453988 CCAATGTTTGGTGCCGGT 58.546 55.556 1.90 0.00 45.93 5.28
138 139 4.459199 CCCCCTCCCCAATGTTTG 57.541 61.111 0.00 0.00 0.00 2.93
153 154 1.075896 AGGTCATCGAGACTCCCCC 60.076 63.158 12.62 0.00 46.72 5.40
154 155 1.110518 GGAGGTCATCGAGACTCCCC 61.111 65.000 13.51 9.20 46.72 4.81
155 156 0.395862 TGGAGGTCATCGAGACTCCC 60.396 60.000 18.81 15.88 46.72 4.30
156 157 0.741915 GTGGAGGTCATCGAGACTCC 59.258 60.000 16.24 16.24 46.72 3.85
157 158 1.464734 TGTGGAGGTCATCGAGACTC 58.535 55.000 12.62 7.23 46.72 3.36
158 159 2.028130 GATGTGGAGGTCATCGAGACT 58.972 52.381 12.62 0.00 46.72 3.24
159 160 2.500509 GATGTGGAGGTCATCGAGAC 57.499 55.000 6.50 6.50 46.83 3.36
179 180 4.980805 TGTTGCAGTCCGGCGTCC 62.981 66.667 6.01 0.00 36.28 4.79
180 181 3.712881 GTGTTGCAGTCCGGCGTC 61.713 66.667 6.01 0.00 36.28 5.19
184 185 4.263572 TGGGGTGTTGCAGTCCGG 62.264 66.667 0.00 0.00 0.00 5.14
185 186 2.469465 ATCTGGGGTGTTGCAGTCCG 62.469 60.000 0.00 0.00 0.00 4.79
186 187 0.962356 CATCTGGGGTGTTGCAGTCC 60.962 60.000 0.00 0.00 0.00 3.85
187 188 0.250901 ACATCTGGGGTGTTGCAGTC 60.251 55.000 0.00 0.00 0.00 3.51
188 189 0.185901 AACATCTGGGGTGTTGCAGT 59.814 50.000 0.00 0.00 38.31 4.40
189 190 1.000060 CAAACATCTGGGGTGTTGCAG 60.000 52.381 0.00 0.00 39.57 4.41
190 191 1.039068 CAAACATCTGGGGTGTTGCA 58.961 50.000 0.00 0.00 39.57 4.08
191 192 1.327303 TCAAACATCTGGGGTGTTGC 58.673 50.000 0.00 0.00 39.57 4.17
192 193 3.156293 TCATCAAACATCTGGGGTGTTG 58.844 45.455 0.00 0.00 39.57 3.33
193 194 3.424703 CTCATCAAACATCTGGGGTGTT 58.575 45.455 0.00 0.00 41.28 3.32
194 195 2.291153 CCTCATCAAACATCTGGGGTGT 60.291 50.000 0.00 0.00 0.00 4.16
195 196 2.025981 TCCTCATCAAACATCTGGGGTG 60.026 50.000 0.00 0.00 32.09 4.61
196 197 2.240667 CTCCTCATCAAACATCTGGGGT 59.759 50.000 0.00 0.00 32.09 4.95
197 198 2.928334 CTCCTCATCAAACATCTGGGG 58.072 52.381 0.00 0.00 31.36 4.96
198 199 2.295885 GCTCCTCATCAAACATCTGGG 58.704 52.381 0.00 0.00 0.00 4.45
199 200 2.995283 TGCTCCTCATCAAACATCTGG 58.005 47.619 0.00 0.00 0.00 3.86
200 201 4.260661 CGATTGCTCCTCATCAAACATCTG 60.261 45.833 0.00 0.00 0.00 2.90
201 202 3.875727 CGATTGCTCCTCATCAAACATCT 59.124 43.478 0.00 0.00 0.00 2.90
202 203 3.624861 ACGATTGCTCCTCATCAAACATC 59.375 43.478 0.00 0.00 0.00 3.06
203 204 3.614092 ACGATTGCTCCTCATCAAACAT 58.386 40.909 0.00 0.00 0.00 2.71
204 205 3.057969 ACGATTGCTCCTCATCAAACA 57.942 42.857 0.00 0.00 0.00 2.83
205 206 3.557595 CCTACGATTGCTCCTCATCAAAC 59.442 47.826 0.00 0.00 0.00 2.93
206 207 3.450817 TCCTACGATTGCTCCTCATCAAA 59.549 43.478 0.00 0.00 0.00 2.69
207 208 3.031013 TCCTACGATTGCTCCTCATCAA 58.969 45.455 0.00 0.00 0.00 2.57
208 209 2.625314 CTCCTACGATTGCTCCTCATCA 59.375 50.000 0.00 0.00 0.00 3.07
209 210 2.029470 CCTCCTACGATTGCTCCTCATC 60.029 54.545 0.00 0.00 0.00 2.92
210 211 1.967066 CCTCCTACGATTGCTCCTCAT 59.033 52.381 0.00 0.00 0.00 2.90
211 212 1.063942 TCCTCCTACGATTGCTCCTCA 60.064 52.381 0.00 0.00 0.00 3.86
212 213 1.693627 TCCTCCTACGATTGCTCCTC 58.306 55.000 0.00 0.00 0.00 3.71
213 214 1.757699 GTTCCTCCTACGATTGCTCCT 59.242 52.381 0.00 0.00 0.00 3.69
214 215 1.536284 CGTTCCTCCTACGATTGCTCC 60.536 57.143 0.00 0.00 41.33 4.70
215 216 1.536284 CCGTTCCTCCTACGATTGCTC 60.536 57.143 0.00 0.00 41.33 4.26
216 217 0.460311 CCGTTCCTCCTACGATTGCT 59.540 55.000 0.00 0.00 41.33 3.91
217 218 0.458669 TCCGTTCCTCCTACGATTGC 59.541 55.000 0.00 0.00 41.33 3.56
218 219 2.100916 ACATCCGTTCCTCCTACGATTG 59.899 50.000 0.00 0.00 41.33 2.67
219 220 2.385803 ACATCCGTTCCTCCTACGATT 58.614 47.619 0.00 0.00 41.33 3.34
220 221 2.068834 ACATCCGTTCCTCCTACGAT 57.931 50.000 0.00 0.00 41.33 3.73
221 222 1.843368 AACATCCGTTCCTCCTACGA 58.157 50.000 0.00 0.00 41.33 3.43
222 223 2.094390 TCAAACATCCGTTCCTCCTACG 60.094 50.000 0.00 0.00 38.67 3.51
223 224 3.604875 TCAAACATCCGTTCCTCCTAC 57.395 47.619 0.00 0.00 32.91 3.18
224 225 3.772572 TCATCAAACATCCGTTCCTCCTA 59.227 43.478 0.00 0.00 32.91 2.94
234 235 3.003068 CGATTGCTCCTCATCAAACATCC 59.997 47.826 0.00 0.00 0.00 3.51
257 258 4.541648 GAGGGCGGCCTCCTCCTA 62.542 72.222 40.54 0.00 43.71 2.94
277 278 3.284251 TCCTCCTCCTCCCAGGCA 61.284 66.667 0.00 0.00 34.61 4.75
295 296 2.414824 CCTCTAGCGCATAAGTCGATCC 60.415 54.545 11.47 0.00 0.00 3.36
296 297 2.857618 CCTCTAGCGCATAAGTCGATC 58.142 52.381 11.47 0.00 0.00 3.69
297 298 1.068194 GCCTCTAGCGCATAAGTCGAT 60.068 52.381 11.47 0.00 0.00 3.59
322 323 1.683917 ATCGAAGACAGGATCCTTCCG 59.316 52.381 13.00 11.15 44.13 4.30
325 326 2.102252 GCTCATCGAAGACAGGATCCTT 59.898 50.000 13.00 3.61 42.51 3.36
335 336 1.541310 AACCGGGTGCTCATCGAAGA 61.541 55.000 6.32 0.00 45.75 2.87
341 342 0.039618 ATTCCAAACCGGGTGCTCAT 59.960 50.000 6.32 0.00 34.36 2.90
346 347 1.323412 TTGTGATTCCAAACCGGGTG 58.677 50.000 6.32 2.89 34.36 4.61
375 376 5.304778 CCATGTCGGATATTCCACACAATA 58.695 41.667 0.00 0.00 35.91 1.90
392 393 3.072184 AGGGATCAACATAGAGCCATGTC 59.928 47.826 0.43 0.00 45.76 3.06
393 394 3.051581 AGGGATCAACATAGAGCCATGT 58.948 45.455 0.43 0.00 45.76 3.21
413 414 4.803452 AGGTCTCTCCTCCTTCTCATAAG 58.197 47.826 0.00 0.00 44.42 1.73
414 415 4.890499 AGGTCTCTCCTCCTTCTCATAA 57.110 45.455 0.00 0.00 44.42 1.90
435 436 2.355197 CACTATGAATTGTGTGGGCGA 58.645 47.619 0.00 0.00 0.00 5.54
441 442 2.224992 TGGTGGCCACTATGAATTGTGT 60.225 45.455 33.91 0.00 32.79 3.72
494 495 0.747644 CATCACCATTGCCGCCACTA 60.748 55.000 0.00 0.00 0.00 2.74
495 496 2.048023 CATCACCATTGCCGCCACT 61.048 57.895 0.00 0.00 0.00 4.00
497 498 1.303970 TTCATCACCATTGCCGCCA 60.304 52.632 0.00 0.00 0.00 5.69
536 537 2.024369 TGCTCATAGAGGTGGACAGGTA 60.024 50.000 0.00 0.00 0.00 3.08
541 542 0.103208 CGGTGCTCATAGAGGTGGAC 59.897 60.000 0.00 0.00 0.00 4.02
548 549 4.399219 AGCTATTAGACGGTGCTCATAGA 58.601 43.478 0.00 0.00 28.12 1.98
568 571 8.035984 ACCTAATTCTGACTAAAACTAGTGAGC 58.964 37.037 0.00 0.00 32.47 4.26
606 610 9.403110 CCAAACAAACAAAATTTGAACAATTCA 57.597 25.926 13.19 0.00 35.73 2.57
607 611 9.404348 ACCAAACAAACAAAATTTGAACAATTC 57.596 25.926 13.19 0.00 35.73 2.17
608 612 9.755804 AACCAAACAAACAAAATTTGAACAATT 57.244 22.222 13.19 0.00 35.73 2.32
665 704 8.417176 CAAATAGACGAAAATGAAAGAAAACGG 58.583 33.333 0.00 0.00 0.00 4.44
666 705 8.953990 ACAAATAGACGAAAATGAAAGAAAACG 58.046 29.630 0.00 0.00 0.00 3.60
668 707 8.751335 GCACAAATAGACGAAAATGAAAGAAAA 58.249 29.630 0.00 0.00 0.00 2.29
669 708 7.112844 CGCACAAATAGACGAAAATGAAAGAAA 59.887 33.333 0.00 0.00 0.00 2.52
670 709 6.577055 CGCACAAATAGACGAAAATGAAAGAA 59.423 34.615 0.00 0.00 0.00 2.52
671 710 6.077197 CGCACAAATAGACGAAAATGAAAGA 58.923 36.000 0.00 0.00 0.00 2.52
672 711 5.851177 ACGCACAAATAGACGAAAATGAAAG 59.149 36.000 0.00 0.00 0.00 2.62
673 712 5.753744 ACGCACAAATAGACGAAAATGAAA 58.246 33.333 0.00 0.00 0.00 2.69
674 713 5.351233 ACGCACAAATAGACGAAAATGAA 57.649 34.783 0.00 0.00 0.00 2.57
675 714 4.433674 CGACGCACAAATAGACGAAAATGA 60.434 41.667 0.00 0.00 0.00 2.57
676 715 3.773549 CGACGCACAAATAGACGAAAATG 59.226 43.478 0.00 0.00 0.00 2.32
677 716 3.430895 ACGACGCACAAATAGACGAAAAT 59.569 39.130 0.00 0.00 0.00 1.82
678 717 2.796031 ACGACGCACAAATAGACGAAAA 59.204 40.909 0.00 0.00 0.00 2.29
679 718 2.396601 ACGACGCACAAATAGACGAAA 58.603 42.857 0.00 0.00 0.00 3.46
680 719 1.980844 GACGACGCACAAATAGACGAA 59.019 47.619 0.00 0.00 0.00 3.85
681 720 1.609932 GACGACGCACAAATAGACGA 58.390 50.000 0.00 0.00 0.00 4.20
682 721 0.638746 GGACGACGCACAAATAGACG 59.361 55.000 0.00 0.00 0.00 4.18
683 722 1.705256 TGGACGACGCACAAATAGAC 58.295 50.000 0.00 0.00 0.00 2.59
684 723 2.665649 ATGGACGACGCACAAATAGA 57.334 45.000 0.00 0.00 0.00 1.98
685 724 3.124466 TGAAATGGACGACGCACAAATAG 59.876 43.478 0.00 0.00 0.00 1.73
686 725 3.067833 TGAAATGGACGACGCACAAATA 58.932 40.909 0.00 0.00 0.00 1.40
687 726 1.876799 TGAAATGGACGACGCACAAAT 59.123 42.857 0.00 0.00 0.00 2.32
688 727 1.300481 TGAAATGGACGACGCACAAA 58.700 45.000 0.00 0.00 0.00 2.83
689 728 1.518325 ATGAAATGGACGACGCACAA 58.482 45.000 0.00 0.00 0.00 3.33
690 729 2.371910 TATGAAATGGACGACGCACA 57.628 45.000 0.00 0.00 0.00 4.57
691 730 2.863740 TCATATGAAATGGACGACGCAC 59.136 45.455 1.98 0.00 0.00 5.34
692 731 3.172229 TCATATGAAATGGACGACGCA 57.828 42.857 1.98 0.00 0.00 5.24
693 732 3.123621 GGATCATATGAAATGGACGACGC 59.876 47.826 9.99 0.00 0.00 5.19
694 733 3.364920 CGGATCATATGAAATGGACGACG 59.635 47.826 9.99 0.00 0.00 5.12
695 734 4.556233 TCGGATCATATGAAATGGACGAC 58.444 43.478 9.99 0.00 0.00 4.34
696 735 4.864704 TCGGATCATATGAAATGGACGA 57.135 40.909 9.99 10.34 0.00 4.20
697 736 4.749598 TGTTCGGATCATATGAAATGGACG 59.250 41.667 9.99 8.31 0.00 4.79
702 741 6.016860 CACCACATGTTCGGATCATATGAAAT 60.017 38.462 9.99 0.00 0.00 2.17
713 752 1.044611 TCAGTCACCACATGTTCGGA 58.955 50.000 9.12 0.00 0.00 4.55
717 756 3.149196 GTCCAATCAGTCACCACATGTT 58.851 45.455 0.00 0.00 0.00 2.71
719 758 1.733912 CGTCCAATCAGTCACCACATG 59.266 52.381 0.00 0.00 0.00 3.21
722 761 2.002586 CATCGTCCAATCAGTCACCAC 58.997 52.381 0.00 0.00 0.00 4.16
745 784 3.803082 CACACAGCGGGCGGAATG 61.803 66.667 0.00 0.00 0.00 2.67
791 830 2.808906 AGGGCAACTCTAATTGGGAC 57.191 50.000 0.00 0.00 0.00 4.46
795 834 4.698575 GTCCTCTAGGGCAACTCTAATTG 58.301 47.826 0.00 0.00 40.23 2.32
818 857 4.084537 CCGGCGTCTTAAATCACATACATC 60.085 45.833 6.01 0.00 0.00 3.06
826 865 0.108041 GGTCCCGGCGTCTTAAATCA 60.108 55.000 6.01 0.00 0.00 2.57
833 872 2.521224 GGATAGGTCCCGGCGTCT 60.521 66.667 6.01 0.19 38.69 4.18
838 877 2.500392 TTTGTTTGGATAGGTCCCGG 57.500 50.000 0.00 0.00 44.41 5.73
846 885 5.184864 ACGGCTCATCAAATTTGTTTGGATA 59.815 36.000 17.47 0.00 32.99 2.59
849 888 3.429543 CACGGCTCATCAAATTTGTTTGG 59.570 43.478 17.47 11.13 32.99 3.28
869 908 5.100943 GGTCCGAACACTTCTATCTAACAC 58.899 45.833 0.00 0.00 0.00 3.32
874 913 3.385111 GGATGGTCCGAACACTTCTATCT 59.615 47.826 0.00 0.00 0.00 1.98
893 937 3.211045 CCGGTAAACATTTGGATCGGAT 58.789 45.455 0.00 0.00 38.64 4.18
894 938 2.634600 CCGGTAAACATTTGGATCGGA 58.365 47.619 0.00 0.00 38.64 4.55
895 939 1.064952 GCCGGTAAACATTTGGATCGG 59.935 52.381 1.90 0.00 39.26 4.18
896 940 1.267832 CGCCGGTAAACATTTGGATCG 60.268 52.381 1.90 0.00 0.00 3.69
897 941 1.741145 ACGCCGGTAAACATTTGGATC 59.259 47.619 1.90 0.00 0.00 3.36
898 942 1.828979 ACGCCGGTAAACATTTGGAT 58.171 45.000 1.90 0.00 0.00 3.41
899 943 1.606903 AACGCCGGTAAACATTTGGA 58.393 45.000 1.90 0.00 0.00 3.53
900 944 2.425578 AAACGCCGGTAAACATTTGG 57.574 45.000 1.90 0.00 0.00 3.28
901 945 6.543187 GTTATAAACGCCGGTAAACATTTG 57.457 37.500 1.90 0.00 0.00 2.32
941 985 4.444720 CGGTCTTTCTGTTTGACTGTACTC 59.555 45.833 0.00 0.00 33.72 2.59
948 999 4.152580 GGATCTTCGGTCTTTCTGTTTGAC 59.847 45.833 0.00 0.00 0.00 3.18
1031 1086 3.934962 GGAGGAGGGCGAGGCATC 61.935 72.222 2.63 2.63 0.00 3.91
1098 1153 1.030488 CGGACGTTAGGAGGAGAGCA 61.030 60.000 0.00 0.00 0.00 4.26
1129 1184 1.826921 GGGGATGGATGCTGCTGTG 60.827 63.158 0.00 0.00 0.00 3.66
1611 1667 4.572571 GTGGCACGGTCAACCCCA 62.573 66.667 0.00 0.00 0.00 4.96
1630 1686 0.868406 GCTGGCAGTACAGACACAAC 59.132 55.000 17.16 0.00 40.97 3.32
2284 2340 2.887152 AGTGGATGTTCTTTGCTTGTCC 59.113 45.455 0.00 0.00 0.00 4.02
2317 2373 1.443802 CTCCGAAGAAACCCAAGAGC 58.556 55.000 0.00 0.00 0.00 4.09
2518 2574 2.359975 GTTCGGCTTCACCCCCAG 60.360 66.667 0.00 0.00 33.26 4.45
2598 2654 3.347216 ACGCATGTCCTCAAATAGCTTT 58.653 40.909 0.00 0.00 0.00 3.51
2599 2655 2.991250 ACGCATGTCCTCAAATAGCTT 58.009 42.857 0.00 0.00 0.00 3.74
2986 3042 5.359756 TGCATTCTATAACATCGCTGTTCT 58.640 37.500 8.09 1.42 44.43 3.01
3008 3064 1.524355 CTGACACGAGTGCAAGACTTG 59.476 52.381 11.02 11.02 41.48 3.16
3098 3157 4.085733 CAAAACAAGGGTACATGGGATGA 58.914 43.478 0.00 0.00 0.00 2.92
3136 3195 2.284995 ACAGACCCTCCCTCAGCC 60.285 66.667 0.00 0.00 0.00 4.85
3137 3196 0.033011 TAGACAGACCCTCCCTCAGC 60.033 60.000 0.00 0.00 0.00 4.26
3270 3330 2.011122 TATAGGGAGGCCTGCTGTAC 57.989 55.000 24.77 7.21 0.00 2.90
3509 3905 4.936411 CCATAACGTGTTAACACATACCCA 59.064 41.667 32.07 14.73 46.75 4.51
3525 3921 3.192422 TGCAACAAGGAATTCCCATAACG 59.808 43.478 21.22 6.93 37.41 3.18
3534 3930 4.853924 ATTCGACTTGCAACAAGGAATT 57.146 36.364 11.69 0.00 0.00 2.17
3695 4091 3.046390 GTGAAATCATCGTAGCTCTCGG 58.954 50.000 10.51 0.00 0.00 4.63
3729 4125 2.418910 ATAGCGGCACTCGTCAGCT 61.419 57.895 1.45 0.00 41.72 4.24
3747 4143 4.142491 ACGAAGTCAAAATCAAACACTGCA 60.142 37.500 0.00 0.00 29.74 4.41
3928 4358 6.899393 TGCAGAGGTGATTTTATCAAACTT 57.101 33.333 0.00 0.00 41.69 2.66
3970 4400 9.893634 AATGATCAAGAATAAAATGAAATGCCA 57.106 25.926 0.00 0.00 0.00 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.