Multiple sequence alignment - TraesCS6D01G228600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G228600 chr6D 100.000 4964 0 0 1 4964 319677435 319682398 0.000000e+00 9167.0
1 TraesCS6D01G228600 chr6A 91.140 3826 182 73 261 4006 457370090 457373838 0.000000e+00 5042.0
2 TraesCS6D01G228600 chr6A 94.619 223 9 3 4547 4767 276454115 276453894 4.760000e-90 342.0
3 TraesCS6D01G228600 chr6A 80.658 243 33 11 10 241 158924410 158924649 5.110000e-40 176.0
4 TraesCS6D01G228600 chr6A 94.545 55 3 0 4906 4960 53814780 53814834 8.850000e-13 86.1
5 TraesCS6D01G228600 chr6B 87.172 4381 282 128 269 4509 503562112 503557872 0.000000e+00 4719.0
6 TraesCS6D01G228600 chr6B 88.318 214 17 4 52 259 503562425 503562214 2.970000e-62 250.0
7 TraesCS6D01G228600 chr6B 93.407 91 6 0 356 446 503586868 503586778 8.670000e-28 135.0
8 TraesCS6D01G228600 chr6B 88.421 95 8 1 4818 4909 503557859 503557765 1.460000e-20 111.0
9 TraesCS6D01G228600 chr6B 90.625 64 6 0 4897 4960 201452668 201452731 8.850000e-13 86.1
10 TraesCS6D01G228600 chr6B 97.674 43 1 0 247 289 503562194 503562152 1.920000e-09 75.0
11 TraesCS6D01G228600 chr7B 95.000 220 9 2 4544 4761 648055894 648055675 1.320000e-90 344.0
12 TraesCS6D01G228600 chr7B 94.977 219 9 2 4545 4761 301590884 301591102 4.760000e-90 342.0
13 TraesCS6D01G228600 chr5B 95.000 220 9 2 4545 4762 631097462 631097243 1.320000e-90 344.0
14 TraesCS6D01G228600 chr5B 83.000 100 14 3 4374 4471 10262067 10261969 2.460000e-13 87.9
15 TraesCS6D01G228600 chr5B 93.023 43 2 1 4389 4430 499132154 499132196 1.490000e-05 62.1
16 TraesCS6D01G228600 chr7D 94.977 219 9 2 4545 4761 227049056 227048838 4.760000e-90 342.0
17 TraesCS6D01G228600 chr4D 94.977 219 9 2 4545 4761 213305490 213305272 4.760000e-90 342.0
18 TraesCS6D01G228600 chr4D 93.833 227 12 2 4545 4769 334111881 334112107 1.710000e-89 340.0
19 TraesCS6D01G228600 chr4D 79.752 242 32 11 10 241 255989172 255989406 5.140000e-35 159.0
20 TraesCS6D01G228600 chr5D 94.931 217 11 0 4545 4761 536591623 536591407 1.710000e-89 340.0
21 TraesCS6D01G228600 chr5D 96.154 52 2 0 4909 4960 6168342 6168291 8.850000e-13 86.1
22 TraesCS6D01G228600 chr5D 96.154 52 2 0 4909 4960 6267379 6267328 8.850000e-13 86.1
23 TraesCS6D01G228600 chr5D 96.154 52 2 0 4909 4960 329159372 329159321 8.850000e-13 86.1
24 TraesCS6D01G228600 chr5D 94.545 55 3 0 4906 4960 503300504 503300558 8.850000e-13 86.1
25 TraesCS6D01G228600 chr3B 94.570 221 10 2 4544 4762 750436328 750436548 1.710000e-89 340.0
26 TraesCS6D01G228600 chr7A 81.092 238 34 8 10 241 446368784 446369016 3.950000e-41 180.0
27 TraesCS6D01G228600 chr7A 79.032 248 33 14 5 240 716248570 716248810 8.610000e-33 152.0
28 TraesCS6D01G228600 chr1A 80.000 240 37 8 10 241 443869343 443869107 3.070000e-37 167.0
29 TraesCS6D01G228600 chr1A 79.498 239 39 7 10 241 465257754 465257519 1.430000e-35 161.0
30 TraesCS6D01G228600 chr1A 85.217 115 13 4 4367 4479 154075091 154075203 1.130000e-21 115.0
31 TraesCS6D01G228600 chr1A 94.545 55 3 0 4906 4960 154075203 154075257 8.850000e-13 86.1
32 TraesCS6D01G228600 chr4A 79.498 239 34 11 13 241 343606710 343606477 6.650000e-34 156.0
33 TraesCS6D01G228600 chr4A 93.220 59 3 1 4903 4960 43719127 43719185 8.850000e-13 86.1
34 TraesCS6D01G228600 chr4A 100.000 28 0 0 4475 4502 614680287 614680314 9.000000e-03 52.8
35 TraesCS6D01G228600 chr2D 80.102 196 34 5 5 198 8149234 8149042 1.860000e-29 141.0
36 TraesCS6D01G228600 chr5A 85.000 100 12 3 4374 4471 8064878 8064976 1.140000e-16 99.0
37 TraesCS6D01G228600 chrUn 96.154 52 2 0 4909 4960 469402779 469402728 8.850000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G228600 chr6D 319677435 319682398 4963 False 9167.00 9167 100.00000 1 4964 1 chr6D.!!$F1 4963
1 TraesCS6D01G228600 chr6A 457370090 457373838 3748 False 5042.00 5042 91.14000 261 4006 1 chr6A.!!$F3 3745
2 TraesCS6D01G228600 chr6B 503557765 503562425 4660 True 1288.75 4719 90.39625 52 4909 4 chr6B.!!$R2 4857

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
529 632 0.039165 AAACCTAACGACCGACGACC 60.039 55.0 0.0 0.0 45.77 4.79 F
2318 2627 0.615850 CCTCAGGTCTCAAGGGTTCC 59.384 60.0 0.0 0.0 0.00 3.62 F
2485 2814 0.110486 GCTTCCCCAACAGAGGAACA 59.890 55.0 0.0 0.0 37.23 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2414 2743 0.035458 AGTCCCTGTTCTTGCGAAGG 59.965 55.000 0.0 0.0 0.00 3.46 R
3445 3783 1.471153 GGGCTAGAACTACTTCACCGC 60.471 57.143 0.0 0.0 0.00 5.68 R
4279 4621 2.103537 TAAAACTCGTAGCCCAAGCC 57.896 50.000 0.0 0.0 41.25 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.050970 TCACTACTCCGCATATAAGATTTGT 57.949 36.000 0.00 0.00 0.00 2.83
25 26 7.145985 TCACTACTCCGCATATAAGATTTGTC 58.854 38.462 0.00 0.00 0.00 3.18
26 27 7.014326 TCACTACTCCGCATATAAGATTTGTCT 59.986 37.037 0.00 0.00 0.00 3.41
27 28 7.115520 CACTACTCCGCATATAAGATTTGTCTG 59.884 40.741 0.00 0.00 0.00 3.51
28 29 6.161855 ACTCCGCATATAAGATTTGTCTGA 57.838 37.500 0.00 0.00 0.00 3.27
29 30 6.582636 ACTCCGCATATAAGATTTGTCTGAA 58.417 36.000 0.00 0.00 0.00 3.02
30 31 7.047891 ACTCCGCATATAAGATTTGTCTGAAA 58.952 34.615 0.00 0.00 0.00 2.69
31 32 7.716998 ACTCCGCATATAAGATTTGTCTGAAAT 59.283 33.333 0.00 0.00 0.00 2.17
32 33 8.087982 TCCGCATATAAGATTTGTCTGAAATC 57.912 34.615 0.00 0.00 37.01 2.17
33 34 7.714813 TCCGCATATAAGATTTGTCTGAAATCA 59.285 33.333 9.24 0.00 38.70 2.57
34 35 8.344831 CCGCATATAAGATTTGTCTGAAATCAA 58.655 33.333 9.24 0.00 38.70 2.57
35 36 9.378597 CGCATATAAGATTTGTCTGAAATCAAG 57.621 33.333 9.24 0.00 38.70 3.02
36 37 9.178427 GCATATAAGATTTGTCTGAAATCAAGC 57.822 33.333 9.24 1.84 38.70 4.01
40 41 6.264841 AGATTTGTCTGAAATCAAGCTTCC 57.735 37.500 0.00 0.00 38.70 3.46
41 42 5.771666 AGATTTGTCTGAAATCAAGCTTCCA 59.228 36.000 0.00 0.00 38.70 3.53
42 43 6.436532 AGATTTGTCTGAAATCAAGCTTCCAT 59.563 34.615 0.00 0.00 38.70 3.41
43 44 7.613022 AGATTTGTCTGAAATCAAGCTTCCATA 59.387 33.333 0.00 0.00 38.70 2.74
44 45 7.523293 TTTGTCTGAAATCAAGCTTCCATAA 57.477 32.000 0.00 0.00 0.00 1.90
45 46 7.523293 TTGTCTGAAATCAAGCTTCCATAAA 57.477 32.000 0.00 0.00 0.00 1.40
46 47 7.149569 TGTCTGAAATCAAGCTTCCATAAAG 57.850 36.000 0.00 0.00 38.08 1.85
47 48 6.716628 TGTCTGAAATCAAGCTTCCATAAAGT 59.283 34.615 0.00 0.00 37.31 2.66
48 49 7.231317 TGTCTGAAATCAAGCTTCCATAAAGTT 59.769 33.333 0.00 0.00 37.31 2.66
49 50 8.084684 GTCTGAAATCAAGCTTCCATAAAGTTT 58.915 33.333 0.00 0.00 38.78 2.66
125 126 7.595819 TTAGATGCATCCCGGATTTAATTTT 57.404 32.000 23.06 1.91 0.00 1.82
128 129 5.867903 TGCATCCCGGATTTAATTTTCAT 57.132 34.783 0.73 0.00 0.00 2.57
130 131 7.537596 TGCATCCCGGATTTAATTTTCATAT 57.462 32.000 0.73 0.00 0.00 1.78
135 136 9.981114 ATCCCGGATTTAATTTTCATATTTGTC 57.019 29.630 0.73 0.00 0.00 3.18
153 154 9.787435 ATATTTGTCTAACTTTGGTGTTGTAGA 57.213 29.630 0.00 0.00 0.00 2.59
155 156 7.490962 TTGTCTAACTTTGGTGTTGTAGATG 57.509 36.000 0.00 0.00 0.00 2.90
259 266 5.241728 GGAGTAGGCAAATAAATGGATCACC 59.758 44.000 0.00 0.00 0.00 4.02
420 515 9.998106 CTATAATTAGGGCAGAGCTACTAAAAA 57.002 33.333 9.44 3.99 34.15 1.94
441 544 1.410153 CAGGAGCATGTTTTATGGGGC 59.590 52.381 0.00 0.00 0.00 5.80
442 545 1.006998 AGGAGCATGTTTTATGGGGCA 59.993 47.619 0.00 0.00 0.00 5.36
443 546 1.830477 GGAGCATGTTTTATGGGGCAA 59.170 47.619 0.00 0.00 0.00 4.52
444 547 2.235898 GGAGCATGTTTTATGGGGCAAA 59.764 45.455 0.00 0.00 0.00 3.68
445 548 3.307339 GGAGCATGTTTTATGGGGCAAAA 60.307 43.478 0.00 0.00 0.00 2.44
446 549 4.322567 GAGCATGTTTTATGGGGCAAAAA 58.677 39.130 0.00 0.00 0.00 1.94
470 573 6.481434 AGGAGTATATACGGCAAAACTCTT 57.519 37.500 7.23 0.00 34.99 2.85
519 622 3.919804 TCGGTCATTTACGAAACCTAACG 59.080 43.478 0.00 0.00 36.01 3.18
527 630 0.110238 CGAAACCTAACGACCGACGA 60.110 55.000 0.00 0.00 45.77 4.20
528 631 1.331241 GAAACCTAACGACCGACGAC 58.669 55.000 0.00 0.00 45.77 4.34
529 632 0.039165 AAACCTAACGACCGACGACC 60.039 55.000 0.00 0.00 45.77 4.79
530 633 2.099062 CCTAACGACCGACGACCG 59.901 66.667 0.00 1.50 45.77 4.79
531 634 2.390599 CCTAACGACCGACGACCGA 61.391 63.158 13.99 0.00 45.77 4.69
532 635 1.225854 CTAACGACCGACGACCGAC 60.226 63.158 13.99 0.00 45.77 4.79
553 665 1.131126 CGCCACGATTTTTCAGCAGAT 59.869 47.619 0.00 0.00 0.00 2.90
555 667 3.181511 CGCCACGATTTTTCAGCAGATAA 60.182 43.478 0.00 0.00 0.00 1.75
556 668 4.496341 CGCCACGATTTTTCAGCAGATAAT 60.496 41.667 0.00 0.00 0.00 1.28
558 670 5.220931 GCCACGATTTTTCAGCAGATAATCT 60.221 40.000 10.59 0.00 0.00 2.40
559 671 6.425504 CCACGATTTTTCAGCAGATAATCTC 58.574 40.000 10.59 0.49 0.00 2.75
560 672 6.037500 CCACGATTTTTCAGCAGATAATCTCA 59.962 38.462 10.59 0.00 0.00 3.27
561 673 7.255035 CCACGATTTTTCAGCAGATAATCTCAT 60.255 37.037 10.59 0.00 0.00 2.90
562 674 7.797587 CACGATTTTTCAGCAGATAATCTCATC 59.202 37.037 10.59 0.14 0.00 2.92
619 731 1.236616 CGCCCAGCAATGTTCAGTCA 61.237 55.000 0.00 0.00 0.00 3.41
638 750 2.769617 CGATCACCACGAACGCAC 59.230 61.111 0.00 0.00 32.88 5.34
639 751 2.726691 CGATCACCACGAACGCACC 61.727 63.158 0.00 0.00 32.88 5.01
640 752 1.666553 GATCACCACGAACGCACCA 60.667 57.895 0.00 0.00 0.00 4.17
641 753 1.897398 GATCACCACGAACGCACCAC 61.897 60.000 0.00 0.00 0.00 4.16
653 765 4.012895 CACCACGAACGCTGGCAC 62.013 66.667 12.78 0.00 31.13 5.01
654 766 4.235762 ACCACGAACGCTGGCACT 62.236 61.111 12.78 0.00 31.13 4.40
655 767 3.716006 CCACGAACGCTGGCACTG 61.716 66.667 0.00 0.00 0.00 3.66
656 768 2.661537 CACGAACGCTGGCACTGA 60.662 61.111 0.00 0.00 0.00 3.41
657 769 2.661866 ACGAACGCTGGCACTGAC 60.662 61.111 0.00 0.00 0.00 3.51
658 770 3.414700 CGAACGCTGGCACTGACC 61.415 66.667 0.00 0.00 0.00 4.02
659 771 2.280797 GAACGCTGGCACTGACCA 60.281 61.111 0.00 0.00 38.29 4.02
660 772 2.591715 AACGCTGGCACTGACCAC 60.592 61.111 0.00 0.00 35.33 4.16
661 773 4.969196 ACGCTGGCACTGACCACG 62.969 66.667 0.00 0.00 38.97 4.94
662 774 4.662961 CGCTGGCACTGACCACGA 62.663 66.667 0.00 0.00 36.78 4.35
663 775 2.046892 GCTGGCACTGACCACGAT 60.047 61.111 0.00 0.00 35.33 3.73
664 776 2.103042 GCTGGCACTGACCACGATC 61.103 63.158 0.00 0.00 35.33 3.69
668 780 2.103042 GCACTGACCACGATCCTGC 61.103 63.158 0.00 0.00 0.00 4.85
966 1158 4.805219 TCGTACGATGATAACATGGGATG 58.195 43.478 15.28 0.00 36.72 3.51
997 1189 3.068691 CCGCTTCTCCTCGTCCCA 61.069 66.667 0.00 0.00 0.00 4.37
1258 1506 1.058404 CCGGAAAACGTCTTCTCGTC 58.942 55.000 0.00 0.00 43.38 4.20
1259 1507 1.058404 CGGAAAACGTCTTCTCGTCC 58.942 55.000 0.97 0.00 43.38 4.79
1260 1508 1.335689 CGGAAAACGTCTTCTCGTCCT 60.336 52.381 0.97 0.00 43.38 3.85
1261 1509 2.095567 CGGAAAACGTCTTCTCGTCCTA 60.096 50.000 0.97 0.00 43.38 2.94
1303 1557 6.563753 CGTCGGTACAAATTCGTTTCCTTTTA 60.564 38.462 0.00 0.00 0.00 1.52
1337 1595 1.399440 TGCATGCGATCTTGCTTCTTC 59.601 47.619 14.09 0.00 42.07 2.87
1338 1596 1.669779 GCATGCGATCTTGCTTCTTCT 59.330 47.619 0.00 0.00 39.47 2.85
1339 1597 2.097142 GCATGCGATCTTGCTTCTTCTT 59.903 45.455 0.00 0.00 39.47 2.52
1363 1621 4.853743 GCTGAACACGATCAAGGATTTTTC 59.146 41.667 0.00 0.00 0.00 2.29
1367 1628 6.592220 TGAACACGATCAAGGATTTTTCGATA 59.408 34.615 0.00 0.00 34.15 2.92
1380 1641 6.237996 GGATTTTTCGATATGTTGCACGAGTA 60.238 38.462 0.00 0.00 36.22 2.59
1389 1650 7.736017 CGATATGTTGCACGAGTATGATTTTAC 59.264 37.037 0.00 0.00 0.00 2.01
1390 1651 6.985188 ATGTTGCACGAGTATGATTTTACT 57.015 33.333 0.00 0.00 35.13 2.24
1391 1652 9.758651 ATATGTTGCACGAGTATGATTTTACTA 57.241 29.630 0.00 0.00 32.59 1.82
1392 1653 7.520119 TGTTGCACGAGTATGATTTTACTAG 57.480 36.000 0.00 0.00 32.59 2.57
1397 1658 6.362820 GCACGAGTATGATTTTACTAGTAGGC 59.637 42.308 2.23 0.00 36.34 3.93
1524 1791 8.740123 ACGTAAGATCAATCTCTCTCTTTCTA 57.260 34.615 0.00 0.00 43.62 2.10
1566 1835 3.065655 GCCTCTTCATCATTGGAGATCG 58.934 50.000 0.00 0.00 36.86 3.69
1577 1846 1.990799 TGGAGATCGTAGCACAAACG 58.009 50.000 0.00 0.00 41.64 3.60
1597 1892 3.567797 GCCGCGAGCCATCACTTC 61.568 66.667 8.23 0.00 34.35 3.01
1634 1929 7.639378 TGCATCCTTTAATTCTAACCTAACCT 58.361 34.615 0.00 0.00 0.00 3.50
1639 1934 7.929785 TCCTTTAATTCTAACCTAACCTATGCG 59.070 37.037 0.00 0.00 0.00 4.73
1644 1951 5.002464 TCTAACCTAACCTATGCGAACAC 57.998 43.478 0.00 0.00 0.00 3.32
1657 1964 1.665679 GCGAACACATGTGTATCCAGG 59.334 52.381 30.75 16.59 44.13 4.45
1737 2044 1.274703 ACAATGTGGCCGAGGAGGAT 61.275 55.000 0.00 0.00 45.00 3.24
1740 2047 0.982852 ATGTGGCCGAGGAGGATGAA 60.983 55.000 0.00 0.00 45.00 2.57
1752 2059 1.148048 GGATGAAGAGGAGCTGCCC 59.852 63.158 0.00 0.00 37.37 5.36
1780 2087 5.681179 GCTGAGGAGATAGAAGTGGAAGAAC 60.681 48.000 0.00 0.00 0.00 3.01
1785 2092 6.378848 AGGAGATAGAAGTGGAAGAACAGTAC 59.621 42.308 0.00 0.00 0.00 2.73
1887 2194 4.062991 GGAAACAACATCAGTCTAACGGT 58.937 43.478 0.00 0.00 0.00 4.83
1891 2198 0.973632 ACATCAGTCTAACGGTGCCA 59.026 50.000 0.00 0.00 0.00 4.92
1963 2270 1.068055 GGTGAGTTTTCGCTCGGTCTA 60.068 52.381 0.00 0.00 38.28 2.59
2015 2323 1.070843 CAGTTGTTAACGGCGTCAGTG 60.071 52.381 15.17 5.21 36.23 3.66
2143 2451 1.763968 CCGTCCAGAGTATGTCCTGA 58.236 55.000 0.00 0.00 32.37 3.86
2145 2453 2.035193 CCGTCCAGAGTATGTCCTGATG 59.965 54.545 0.00 0.00 32.37 3.07
2307 2616 1.409427 CCCAAGATCGTACCTCAGGTC 59.591 57.143 0.00 0.00 37.09 3.85
2309 2618 2.359531 CCAAGATCGTACCTCAGGTCTC 59.640 54.545 0.00 0.00 37.09 3.36
2317 2626 1.353091 ACCTCAGGTCTCAAGGGTTC 58.647 55.000 0.00 0.00 34.31 3.62
2318 2627 0.615850 CCTCAGGTCTCAAGGGTTCC 59.384 60.000 0.00 0.00 0.00 3.62
2319 2628 1.352083 CTCAGGTCTCAAGGGTTCCA 58.648 55.000 0.00 0.00 0.00 3.53
2320 2629 1.699634 CTCAGGTCTCAAGGGTTCCAA 59.300 52.381 0.00 0.00 0.00 3.53
2321 2630 2.106511 CTCAGGTCTCAAGGGTTCCAAA 59.893 50.000 0.00 0.00 0.00 3.28
2322 2631 2.158667 TCAGGTCTCAAGGGTTCCAAAC 60.159 50.000 0.00 0.00 0.00 2.93
2324 2633 2.514160 AGGTCTCAAGGGTTCCAAACTT 59.486 45.455 0.00 0.00 0.00 2.66
2325 2634 3.052869 AGGTCTCAAGGGTTCCAAACTTT 60.053 43.478 0.00 0.00 0.00 2.66
2328 2637 4.401202 GTCTCAAGGGTTCCAAACTTTCAA 59.599 41.667 0.00 0.00 0.00 2.69
2330 2639 5.301805 TCTCAAGGGTTCCAAACTTTCAATC 59.698 40.000 0.00 0.00 0.00 2.67
2331 2640 4.037446 TCAAGGGTTCCAAACTTTCAATCG 59.963 41.667 0.00 0.00 0.00 3.34
2332 2641 3.827722 AGGGTTCCAAACTTTCAATCGA 58.172 40.909 0.00 0.00 0.00 3.59
2333 2642 3.568430 AGGGTTCCAAACTTTCAATCGAC 59.432 43.478 0.00 0.00 0.00 4.20
2338 2652 6.581166 GGTTCCAAACTTTCAATCGACATTAC 59.419 38.462 0.00 0.00 0.00 1.89
2339 2653 6.249035 TCCAAACTTTCAATCGACATTACC 57.751 37.500 0.00 0.00 0.00 2.85
2341 2655 6.072728 TCCAAACTTTCAATCGACATTACCAG 60.073 38.462 0.00 0.00 0.00 4.00
2342 2656 6.072728 CCAAACTTTCAATCGACATTACCAGA 60.073 38.462 0.00 0.00 0.00 3.86
2352 2666 4.506288 TCGACATTACCAGATTGTTATGCG 59.494 41.667 0.00 0.00 30.42 4.73
2356 2670 5.065988 ACATTACCAGATTGTTATGCGGTTC 59.934 40.000 0.00 0.00 30.42 3.62
2358 2672 3.417101 ACCAGATTGTTATGCGGTTCAA 58.583 40.909 0.00 0.00 0.00 2.69
2365 2693 4.418013 TGTTATGCGGTTCAAATGTGAG 57.582 40.909 0.00 0.00 34.49 3.51
2369 2697 2.503331 TGCGGTTCAAATGTGAGTGAT 58.497 42.857 0.00 0.00 34.49 3.06
2376 2704 7.304735 CGGTTCAAATGTGAGTGATAATTTGA 58.695 34.615 5.75 5.75 43.61 2.69
2420 2749 1.154197 GTAAGGTTGACACCCTTCGC 58.846 55.000 7.67 0.00 45.63 4.70
2421 2750 0.759959 TAAGGTTGACACCCTTCGCA 59.240 50.000 7.67 0.00 45.63 5.10
2469 2798 1.299926 GACGATGCCGATACCGCTT 60.300 57.895 0.00 0.00 39.50 4.68
2485 2814 0.110486 GCTTCCCCAACAGAGGAACA 59.890 55.000 0.00 0.00 37.23 3.18
2486 2815 1.897560 CTTCCCCAACAGAGGAACAC 58.102 55.000 0.00 0.00 37.23 3.32
2487 2816 1.142870 CTTCCCCAACAGAGGAACACA 59.857 52.381 0.00 0.00 37.23 3.72
2533 2862 6.414732 CCCTAAAATCTGGTGAGTATGAACA 58.585 40.000 0.00 0.00 0.00 3.18
2535 2864 6.878923 CCTAAAATCTGGTGAGTATGAACACA 59.121 38.462 0.00 0.00 38.57 3.72
2549 2878 7.551585 AGTATGAACACAGTAGATCTTTCCAG 58.448 38.462 0.00 0.00 0.00 3.86
2555 2884 2.768527 CAGTAGATCTTTCCAGAGCCCA 59.231 50.000 0.00 0.00 35.91 5.36
2559 2888 2.376518 AGATCTTTCCAGAGCCCAAACA 59.623 45.455 0.00 0.00 35.91 2.83
2560 2889 2.746279 TCTTTCCAGAGCCCAAACAA 57.254 45.000 0.00 0.00 0.00 2.83
2561 2890 3.025322 TCTTTCCAGAGCCCAAACAAA 57.975 42.857 0.00 0.00 0.00 2.83
2562 2891 3.575805 TCTTTCCAGAGCCCAAACAAAT 58.424 40.909 0.00 0.00 0.00 2.32
2563 2892 3.966665 TCTTTCCAGAGCCCAAACAAATT 59.033 39.130 0.00 0.00 0.00 1.82
2564 2893 4.039124 TCTTTCCAGAGCCCAAACAAATTC 59.961 41.667 0.00 0.00 0.00 2.17
2565 2894 1.885887 TCCAGAGCCCAAACAAATTCG 59.114 47.619 0.00 0.00 0.00 3.34
2566 2895 1.885887 CCAGAGCCCAAACAAATTCGA 59.114 47.619 0.00 0.00 0.00 3.71
2567 2896 2.295909 CCAGAGCCCAAACAAATTCGAA 59.704 45.455 0.00 0.00 0.00 3.71
2568 2897 3.056607 CCAGAGCCCAAACAAATTCGAAT 60.057 43.478 4.39 4.39 0.00 3.34
2571 2900 6.155827 CAGAGCCCAAACAAATTCGAATTTA 58.844 36.000 30.14 0.00 36.52 1.40
2573 2902 6.813152 AGAGCCCAAACAAATTCGAATTTATG 59.187 34.615 30.14 26.02 36.52 1.90
2586 2915 7.946918 TTCGAATTTATGTGTGCTTAATTCG 57.053 32.000 17.35 17.35 39.46 3.34
2598 2927 8.722394 TGTGTGCTTAATTCGTTTGACATTATA 58.278 29.630 0.00 0.00 0.00 0.98
2624 2957 4.278669 TGGTATAGAAGTCGAAGCTCATCC 59.721 45.833 0.00 0.00 0.00 3.51
2631 2964 2.123342 GTCGAAGCTCATCCGATGAAG 58.877 52.381 12.16 7.73 39.11 3.02
2632 2965 2.024414 TCGAAGCTCATCCGATGAAGA 58.976 47.619 12.16 4.78 39.11 2.87
2634 2967 2.123342 GAAGCTCATCCGATGAAGACG 58.877 52.381 12.16 2.25 39.11 4.18
2636 2969 1.751351 AGCTCATCCGATGAAGACGAA 59.249 47.619 12.16 0.00 39.11 3.85
2640 2973 2.101415 TCATCCGATGAAGACGAAGCAT 59.899 45.455 8.70 0.00 36.11 3.79
2666 2999 0.663153 GCGACAAACAAGAAGGTGCT 59.337 50.000 0.00 0.00 0.00 4.40
2720 3053 0.815615 GGATCCATCCAGAACCACGC 60.816 60.000 6.95 0.00 46.38 5.34
2724 3057 2.031919 ATCCAGAACCACGCGCAA 59.968 55.556 5.73 0.00 0.00 4.85
2725 3058 1.599518 ATCCAGAACCACGCGCAAA 60.600 52.632 5.73 0.00 0.00 3.68
2726 3059 1.852067 ATCCAGAACCACGCGCAAAC 61.852 55.000 5.73 0.00 0.00 2.93
2763 3096 0.980423 AGGTGAAGAAGGAGCCACTC 59.020 55.000 0.00 0.00 0.00 3.51
2845 3178 1.073199 AAAGCTCGTCCAGGGTTGG 59.927 57.895 0.00 0.00 46.49 3.77
2946 3279 3.283684 CAGCGGCGACCAAAACCA 61.284 61.111 12.98 0.00 0.00 3.67
3071 3404 4.575885 CCTCGGGACAGAACAAAATTAGA 58.424 43.478 0.00 0.00 0.00 2.10
3156 3489 5.701290 GCTTTTGCTCTCAGTACCTTCTTTA 59.299 40.000 0.00 0.00 43.35 1.85
3269 3604 0.961019 TGTTTGCAGCCATCTCCAAC 59.039 50.000 0.00 0.00 0.00 3.77
3385 3720 7.144661 TGTGTTCAAGTATGGTTTGCTTATTG 58.855 34.615 0.00 0.00 0.00 1.90
3445 3783 3.900892 CACCGACCTCGATCCGGG 61.901 72.222 19.60 6.12 46.83 5.73
3644 3983 8.968969 AGAGAAGAAGGTACGTACTTATCAAAT 58.031 33.333 24.07 1.34 34.43 2.32
3729 4068 4.980339 AACCATGCTGATTTTTCCCTTT 57.020 36.364 0.00 0.00 0.00 3.11
3872 4211 3.845781 ATCGTAGACAATTCCATGGCT 57.154 42.857 6.96 0.00 42.51 4.75
3944 4285 2.904434 AGGACATCAAGTTAAGGACCGT 59.096 45.455 0.00 0.00 0.00 4.83
3967 4309 6.511929 CGTCATATCTCATGAGTACAAGACGT 60.512 42.308 29.51 0.00 39.09 4.34
3992 4334 7.692291 GTGACTACATTTTGACGGTTCATATTG 59.308 37.037 0.00 0.00 0.00 1.90
3995 4337 6.339587 ACATTTTGACGGTTCATATTGGTT 57.660 33.333 0.00 0.00 0.00 3.67
3996 4338 6.386654 ACATTTTGACGGTTCATATTGGTTC 58.613 36.000 0.00 0.00 0.00 3.62
4046 4388 9.643693 AACATAGATTGAATTTGGAATTGTGAC 57.356 29.630 0.00 0.00 0.00 3.67
4047 4389 8.805175 ACATAGATTGAATTTGGAATTGTGACA 58.195 29.630 0.00 0.00 0.00 3.58
4180 4522 8.738645 AGAAACTGAGGTGGACAATAATAATC 57.261 34.615 0.00 0.00 0.00 1.75
4242 4584 8.468399 ACGGATCTTTAACCAAAAGTACAAAAA 58.532 29.630 0.00 0.00 44.27 1.94
4243 4585 8.964150 CGGATCTTTAACCAAAAGTACAAAAAG 58.036 33.333 0.00 0.00 44.27 2.27
4244 4586 9.256477 GGATCTTTAACCAAAAGTACAAAAAGG 57.744 33.333 0.00 0.00 44.27 3.11
4252 4594 8.911918 ACCAAAAGTACAAAAAGGAAAGTTTT 57.088 26.923 0.00 0.00 0.00 2.43
4268 4610 6.758416 GGAAAGTTTTGAGATGCTTTCAACTT 59.242 34.615 14.93 0.00 44.91 2.66
4279 4621 2.093467 GCTTTCAACTTCTGCGCTCTAG 59.907 50.000 9.73 5.27 0.00 2.43
4289 4631 2.797278 GCGCTCTAGGCTTGGGCTA 61.797 63.158 18.36 1.16 39.70 3.93
4290 4632 1.068250 CGCTCTAGGCTTGGGCTAC 59.932 63.158 18.36 0.00 39.70 3.58
4327 4669 2.223112 CCTTGAGAATTCGAACCATGCG 60.223 50.000 0.00 0.00 0.00 4.73
4522 4874 9.466497 AAAAGATTCAACTTATCTAAGCCATCA 57.534 29.630 0.00 0.00 36.79 3.07
4523 4875 9.466497 AAAGATTCAACTTATCTAAGCCATCAA 57.534 29.630 0.00 0.00 36.79 2.57
4524 4876 9.466497 AAGATTCAACTTATCTAAGCCATCAAA 57.534 29.630 0.00 0.00 36.79 2.69
4525 4877 8.897752 AGATTCAACTTATCTAAGCCATCAAAC 58.102 33.333 0.00 0.00 36.79 2.93
4526 4878 7.391148 TTCAACTTATCTAAGCCATCAAACC 57.609 36.000 0.00 0.00 36.79 3.27
4527 4879 6.480763 TCAACTTATCTAAGCCATCAAACCA 58.519 36.000 0.00 0.00 36.79 3.67
4528 4880 7.118723 TCAACTTATCTAAGCCATCAAACCAT 58.881 34.615 0.00 0.00 36.79 3.55
4529 4881 6.949352 ACTTATCTAAGCCATCAAACCATG 57.051 37.500 0.00 0.00 36.79 3.66
4530 4882 6.426587 ACTTATCTAAGCCATCAAACCATGT 58.573 36.000 0.00 0.00 36.79 3.21
4531 4883 6.543831 ACTTATCTAAGCCATCAAACCATGTC 59.456 38.462 0.00 0.00 36.79 3.06
4532 4884 4.299586 TCTAAGCCATCAAACCATGTCA 57.700 40.909 0.00 0.00 0.00 3.58
4533 4885 4.264253 TCTAAGCCATCAAACCATGTCAG 58.736 43.478 0.00 0.00 0.00 3.51
4534 4886 2.592102 AGCCATCAAACCATGTCAGT 57.408 45.000 0.00 0.00 0.00 3.41
4535 4887 2.440409 AGCCATCAAACCATGTCAGTC 58.560 47.619 0.00 0.00 0.00 3.51
4536 4888 2.161855 GCCATCAAACCATGTCAGTCA 58.838 47.619 0.00 0.00 0.00 3.41
4537 4889 2.557924 GCCATCAAACCATGTCAGTCAA 59.442 45.455 0.00 0.00 0.00 3.18
4538 4890 3.194116 GCCATCAAACCATGTCAGTCAAT 59.806 43.478 0.00 0.00 0.00 2.57
4539 4891 4.676196 GCCATCAAACCATGTCAGTCAATC 60.676 45.833 0.00 0.00 0.00 2.67
4540 4892 4.437794 CCATCAAACCATGTCAGTCAATCG 60.438 45.833 0.00 0.00 0.00 3.34
4541 4893 4.001618 TCAAACCATGTCAGTCAATCGA 57.998 40.909 0.00 0.00 0.00 3.59
4542 4894 3.745975 TCAAACCATGTCAGTCAATCGAC 59.254 43.478 0.00 0.00 42.95 4.20
4543 4895 2.386661 ACCATGTCAGTCAATCGACC 57.613 50.000 0.00 0.00 43.73 4.79
4544 4896 1.902508 ACCATGTCAGTCAATCGACCT 59.097 47.619 0.00 0.00 43.73 3.85
4545 4897 3.096852 ACCATGTCAGTCAATCGACCTA 58.903 45.455 0.00 0.00 43.73 3.08
4546 4898 3.119101 ACCATGTCAGTCAATCGACCTAC 60.119 47.826 0.00 0.00 43.73 3.18
4547 4899 3.131223 CCATGTCAGTCAATCGACCTACT 59.869 47.826 0.00 0.00 43.73 2.57
4548 4900 4.338400 CCATGTCAGTCAATCGACCTACTA 59.662 45.833 0.00 0.00 43.73 1.82
4549 4901 4.959596 TGTCAGTCAATCGACCTACTAC 57.040 45.455 0.00 0.00 43.73 2.73
4550 4902 3.693085 TGTCAGTCAATCGACCTACTACC 59.307 47.826 0.00 0.00 43.73 3.18
4551 4903 3.946558 GTCAGTCAATCGACCTACTACCT 59.053 47.826 0.00 0.00 43.73 3.08
4552 4904 4.035441 GTCAGTCAATCGACCTACTACCTC 59.965 50.000 0.00 0.00 43.73 3.85
4553 4905 3.315749 CAGTCAATCGACCTACTACCTCC 59.684 52.174 0.00 0.00 43.73 4.30
4554 4906 2.290093 GTCAATCGACCTACTACCTCCG 59.710 54.545 0.00 0.00 36.02 4.63
4555 4907 2.092753 TCAATCGACCTACTACCTCCGT 60.093 50.000 0.00 0.00 0.00 4.69
4556 4908 2.686915 CAATCGACCTACTACCTCCGTT 59.313 50.000 0.00 0.00 0.00 4.44
4557 4909 2.496899 TCGACCTACTACCTCCGTTT 57.503 50.000 0.00 0.00 0.00 3.60
4558 4910 2.359900 TCGACCTACTACCTCCGTTTC 58.640 52.381 0.00 0.00 0.00 2.78
4559 4911 2.086869 CGACCTACTACCTCCGTTTCA 58.913 52.381 0.00 0.00 0.00 2.69
4560 4912 2.097142 CGACCTACTACCTCCGTTTCAG 59.903 54.545 0.00 0.00 0.00 3.02
4561 4913 3.087781 GACCTACTACCTCCGTTTCAGT 58.912 50.000 0.00 0.00 0.00 3.41
4562 4914 3.504375 ACCTACTACCTCCGTTTCAGTT 58.496 45.455 0.00 0.00 0.00 3.16
4563 4915 3.899980 ACCTACTACCTCCGTTTCAGTTT 59.100 43.478 0.00 0.00 0.00 2.66
4564 4916 5.079643 ACCTACTACCTCCGTTTCAGTTTA 58.920 41.667 0.00 0.00 0.00 2.01
4565 4917 5.047731 ACCTACTACCTCCGTTTCAGTTTAC 60.048 44.000 0.00 0.00 0.00 2.01
4566 4918 4.942761 ACTACCTCCGTTTCAGTTTACA 57.057 40.909 0.00 0.00 0.00 2.41
4567 4919 5.280654 ACTACCTCCGTTTCAGTTTACAA 57.719 39.130 0.00 0.00 0.00 2.41
4568 4920 5.295152 ACTACCTCCGTTTCAGTTTACAAG 58.705 41.667 0.00 0.00 0.00 3.16
4569 4921 4.146745 ACCTCCGTTTCAGTTTACAAGT 57.853 40.909 0.00 0.00 0.00 3.16
4570 4922 4.124970 ACCTCCGTTTCAGTTTACAAGTC 58.875 43.478 0.00 0.00 0.00 3.01
4571 4923 3.497262 CCTCCGTTTCAGTTTACAAGTCC 59.503 47.826 0.00 0.00 0.00 3.85
4572 4924 4.377897 CTCCGTTTCAGTTTACAAGTCCT 58.622 43.478 0.00 0.00 0.00 3.85
4573 4925 5.510179 CCTCCGTTTCAGTTTACAAGTCCTA 60.510 44.000 0.00 0.00 0.00 2.94
4574 4926 5.291971 TCCGTTTCAGTTTACAAGTCCTAC 58.708 41.667 0.00 0.00 0.00 3.18
4575 4927 4.149396 CCGTTTCAGTTTACAAGTCCTACG 59.851 45.833 0.00 0.00 0.00 3.51
4576 4928 4.741676 CGTTTCAGTTTACAAGTCCTACGT 59.258 41.667 0.00 0.00 0.00 3.57
4577 4929 5.332055 CGTTTCAGTTTACAAGTCCTACGTG 60.332 44.000 0.00 0.00 33.76 4.49
4578 4930 4.924305 TCAGTTTACAAGTCCTACGTGT 57.076 40.909 0.00 4.18 43.02 4.49
4579 4931 6.389830 TTCAGTTTACAAGTCCTACGTGTA 57.610 37.500 0.00 2.37 40.98 2.90
4580 4932 6.579666 TCAGTTTACAAGTCCTACGTGTAT 57.420 37.500 0.00 0.00 41.34 2.29
4581 4933 7.686438 TCAGTTTACAAGTCCTACGTGTATA 57.314 36.000 0.00 0.77 41.34 1.47
4582 4934 7.530010 TCAGTTTACAAGTCCTACGTGTATAC 58.470 38.462 14.14 14.14 41.34 1.47
4583 4935 6.749118 CAGTTTACAAGTCCTACGTGTATACC 59.251 42.308 16.56 6.29 41.70 2.73
4584 4936 6.660949 AGTTTACAAGTCCTACGTGTATACCT 59.339 38.462 16.56 7.78 41.70 3.08
4585 4937 7.829211 AGTTTACAAGTCCTACGTGTATACCTA 59.171 37.037 16.56 0.00 41.70 3.08
4586 4938 7.792374 TTACAAGTCCTACGTGTATACCTAG 57.208 40.000 0.00 0.00 41.34 3.02
4587 4939 5.994250 ACAAGTCCTACGTGTATACCTAGA 58.006 41.667 0.00 0.00 38.97 2.43
4588 4940 6.599445 ACAAGTCCTACGTGTATACCTAGAT 58.401 40.000 0.00 0.00 38.97 1.98
4589 4941 7.059156 ACAAGTCCTACGTGTATACCTAGATT 58.941 38.462 0.00 0.00 38.97 2.40
4590 4942 7.013083 ACAAGTCCTACGTGTATACCTAGATTG 59.987 40.741 0.00 5.75 38.97 2.67
4591 4943 5.472820 AGTCCTACGTGTATACCTAGATTGC 59.527 44.000 0.00 0.00 0.00 3.56
4592 4944 4.763793 TCCTACGTGTATACCTAGATTGCC 59.236 45.833 0.00 0.00 0.00 4.52
4593 4945 4.521639 CCTACGTGTATACCTAGATTGCCA 59.478 45.833 0.00 0.00 0.00 4.92
4594 4946 5.010314 CCTACGTGTATACCTAGATTGCCAA 59.990 44.000 0.00 0.00 0.00 4.52
4595 4947 5.546621 ACGTGTATACCTAGATTGCCAAT 57.453 39.130 0.00 0.00 0.00 3.16
4596 4948 5.925509 ACGTGTATACCTAGATTGCCAATT 58.074 37.500 0.00 0.00 0.00 2.32
4597 4949 6.354130 ACGTGTATACCTAGATTGCCAATTT 58.646 36.000 0.00 0.00 0.00 1.82
4598 4950 6.826741 ACGTGTATACCTAGATTGCCAATTTT 59.173 34.615 0.00 0.00 0.00 1.82
4599 4951 7.988599 ACGTGTATACCTAGATTGCCAATTTTA 59.011 33.333 0.00 0.00 0.00 1.52
4600 4952 8.999431 CGTGTATACCTAGATTGCCAATTTTAT 58.001 33.333 0.00 0.00 0.00 1.40
4605 4957 7.530426 ACCTAGATTGCCAATTTTATCATCC 57.470 36.000 0.00 0.00 0.00 3.51
4606 4958 7.300658 ACCTAGATTGCCAATTTTATCATCCT 58.699 34.615 0.00 0.00 0.00 3.24
4607 4959 8.448008 ACCTAGATTGCCAATTTTATCATCCTA 58.552 33.333 0.00 0.00 0.00 2.94
4608 4960 9.300681 CCTAGATTGCCAATTTTATCATCCTAA 57.699 33.333 0.00 0.00 0.00 2.69
4647 4999 8.840833 ACACAAAAATTGTACCTTTTGAAAGT 57.159 26.923 21.99 16.28 43.23 2.66
4648 5000 9.930693 ACACAAAAATTGTACCTTTTGAAAGTA 57.069 25.926 21.99 0.00 43.23 2.24
4656 5008 7.797038 TGTACCTTTTGAAAGTAGAAACTCC 57.203 36.000 3.09 0.00 33.75 3.85
4657 5009 6.480981 TGTACCTTTTGAAAGTAGAAACTCCG 59.519 38.462 3.09 0.00 33.75 4.63
4658 5010 5.677567 ACCTTTTGAAAGTAGAAACTCCGA 58.322 37.500 3.09 0.00 33.75 4.55
4659 5011 6.117488 ACCTTTTGAAAGTAGAAACTCCGAA 58.883 36.000 3.09 0.00 33.75 4.30
4660 5012 6.260271 ACCTTTTGAAAGTAGAAACTCCGAAG 59.740 38.462 3.09 0.00 33.75 3.79
4661 5013 6.260271 CCTTTTGAAAGTAGAAACTCCGAAGT 59.740 38.462 3.09 0.00 33.75 3.01
4662 5014 7.201705 CCTTTTGAAAGTAGAAACTCCGAAGTT 60.202 37.037 3.09 0.00 39.62 2.66
4677 5029 9.457436 AACTCCGAAGTTTGTATTGGTATATTT 57.543 29.630 0.00 0.00 43.28 1.40
4678 5030 9.457436 ACTCCGAAGTTTGTATTGGTATATTTT 57.543 29.630 0.00 0.00 28.74 1.82
4712 5064 9.920946 ATATGACTTGTATTAGGTTGGTCAAAT 57.079 29.630 0.00 0.00 36.16 2.32
4713 5065 8.650143 ATGACTTGTATTAGGTTGGTCAAATT 57.350 30.769 0.00 0.00 36.16 1.82
4714 5066 7.881142 TGACTTGTATTAGGTTGGTCAAATTG 58.119 34.615 0.00 0.00 30.81 2.32
4715 5067 7.721842 TGACTTGTATTAGGTTGGTCAAATTGA 59.278 33.333 0.00 0.00 30.81 2.57
4716 5068 7.882179 ACTTGTATTAGGTTGGTCAAATTGAC 58.118 34.615 17.16 17.16 46.23 3.18
4727 5079 4.138487 GTCAAATTGACGATCTAGGGGT 57.862 45.455 10.58 0.00 37.67 4.95
4728 5080 5.272283 GTCAAATTGACGATCTAGGGGTA 57.728 43.478 10.58 0.00 37.67 3.69
4729 5081 5.048507 GTCAAATTGACGATCTAGGGGTAC 58.951 45.833 10.58 0.00 37.67 3.34
4730 5082 4.049186 CAAATTGACGATCTAGGGGTACG 58.951 47.826 0.00 0.00 0.00 3.67
4731 5083 2.425143 TTGACGATCTAGGGGTACGT 57.575 50.000 0.00 0.00 39.82 3.57
4732 5084 1.671979 TGACGATCTAGGGGTACGTG 58.328 55.000 0.00 0.00 37.32 4.49
4733 5085 0.310232 GACGATCTAGGGGTACGTGC 59.690 60.000 0.00 0.00 37.32 5.34
4734 5086 0.394762 ACGATCTAGGGGTACGTGCA 60.395 55.000 5.86 0.00 35.91 4.57
4735 5087 0.030369 CGATCTAGGGGTACGTGCAC 59.970 60.000 6.82 6.82 0.00 4.57
4736 5088 0.030369 GATCTAGGGGTACGTGCACG 59.970 60.000 35.99 35.99 46.33 5.34
4737 5089 2.012902 ATCTAGGGGTACGTGCACGC 62.013 60.000 37.35 22.55 44.43 5.34
4742 5094 4.675029 GGTACGTGCACGCCCTGT 62.675 66.667 37.35 20.98 44.43 4.00
4743 5095 2.259204 GTACGTGCACGCCCTGTA 59.741 61.111 37.35 19.88 44.43 2.74
4744 5096 1.373246 GTACGTGCACGCCCTGTAA 60.373 57.895 37.35 12.50 44.43 2.41
4745 5097 0.945265 GTACGTGCACGCCCTGTAAA 60.945 55.000 37.35 11.10 44.43 2.01
4746 5098 0.945265 TACGTGCACGCCCTGTAAAC 60.945 55.000 37.35 0.00 44.43 2.01
4747 5099 1.959226 CGTGCACGCCCTGTAAACT 60.959 57.895 28.16 0.00 0.00 2.66
4748 5100 1.574428 GTGCACGCCCTGTAAACTG 59.426 57.895 0.00 0.00 0.00 3.16
4749 5101 0.882927 GTGCACGCCCTGTAAACTGA 60.883 55.000 0.00 0.00 0.00 3.41
4750 5102 0.602638 TGCACGCCCTGTAAACTGAG 60.603 55.000 0.00 0.00 0.00 3.35
4751 5103 0.320421 GCACGCCCTGTAAACTGAGA 60.320 55.000 0.00 0.00 0.00 3.27
4752 5104 1.714794 CACGCCCTGTAAACTGAGAG 58.285 55.000 0.00 0.00 0.00 3.20
4753 5105 1.272490 CACGCCCTGTAAACTGAGAGA 59.728 52.381 0.00 0.00 0.00 3.10
4754 5106 1.546476 ACGCCCTGTAAACTGAGAGAG 59.454 52.381 0.00 0.00 0.00 3.20
4755 5107 1.134965 CGCCCTGTAAACTGAGAGAGG 60.135 57.143 0.00 0.00 0.00 3.69
4756 5108 1.903183 GCCCTGTAAACTGAGAGAGGT 59.097 52.381 0.00 0.00 0.00 3.85
4757 5109 3.097614 GCCCTGTAAACTGAGAGAGGTA 58.902 50.000 0.00 0.00 0.00 3.08
4758 5110 3.131400 GCCCTGTAAACTGAGAGAGGTAG 59.869 52.174 0.00 0.00 0.00 3.18
4759 5111 4.345854 CCCTGTAAACTGAGAGAGGTAGT 58.654 47.826 0.00 0.00 0.00 2.73
4760 5112 5.507637 CCCTGTAAACTGAGAGAGGTAGTA 58.492 45.833 0.00 0.00 0.00 1.82
4761 5113 5.950549 CCCTGTAAACTGAGAGAGGTAGTAA 59.049 44.000 0.00 0.00 0.00 2.24
4762 5114 6.436532 CCCTGTAAACTGAGAGAGGTAGTAAA 59.563 42.308 0.00 0.00 0.00 2.01
4763 5115 7.124448 CCCTGTAAACTGAGAGAGGTAGTAAAT 59.876 40.741 0.00 0.00 0.00 1.40
4764 5116 8.532819 CCTGTAAACTGAGAGAGGTAGTAAATT 58.467 37.037 0.00 0.00 0.00 1.82
4771 5123 8.569641 ACTGAGAGAGGTAGTAAATTATTAGCG 58.430 37.037 0.00 0.00 0.00 4.26
4772 5124 8.461249 TGAGAGAGGTAGTAAATTATTAGCGT 57.539 34.615 0.30 0.00 0.00 5.07
4773 5125 8.350722 TGAGAGAGGTAGTAAATTATTAGCGTG 58.649 37.037 0.30 0.00 0.00 5.34
4774 5126 7.146648 AGAGAGGTAGTAAATTATTAGCGTGC 58.853 38.462 0.30 0.00 0.00 5.34
4775 5127 6.812998 AGAGGTAGTAAATTATTAGCGTGCA 58.187 36.000 0.00 0.00 0.00 4.57
4776 5128 7.442656 AGAGGTAGTAAATTATTAGCGTGCAT 58.557 34.615 0.00 0.00 0.00 3.96
4777 5129 7.931948 AGAGGTAGTAAATTATTAGCGTGCATT 59.068 33.333 0.00 0.00 0.00 3.56
4778 5130 8.446599 AGGTAGTAAATTATTAGCGTGCATTT 57.553 30.769 0.00 0.00 0.00 2.32
4779 5131 9.550406 AGGTAGTAAATTATTAGCGTGCATTTA 57.450 29.630 0.00 0.00 0.00 1.40
4786 5138 9.748708 AAATTATTAGCGTGCATTTAATGTCAT 57.251 25.926 6.81 0.00 0.00 3.06
4788 5140 9.825972 ATTATTAGCGTGCATTTAATGTCATAC 57.174 29.630 6.81 1.35 0.00 2.39
4789 5141 4.552166 AGCGTGCATTTAATGTCATACC 57.448 40.909 6.81 0.00 0.00 2.73
4790 5142 3.944650 AGCGTGCATTTAATGTCATACCA 59.055 39.130 6.81 0.00 0.00 3.25
4791 5143 4.397730 AGCGTGCATTTAATGTCATACCAA 59.602 37.500 6.81 0.00 0.00 3.67
4792 5144 5.098893 GCGTGCATTTAATGTCATACCAAA 58.901 37.500 6.81 0.00 0.00 3.28
4793 5145 5.748152 GCGTGCATTTAATGTCATACCAAAT 59.252 36.000 6.81 0.00 0.00 2.32
4794 5146 6.915300 GCGTGCATTTAATGTCATACCAAATA 59.085 34.615 6.81 0.00 0.00 1.40
4795 5147 7.594758 GCGTGCATTTAATGTCATACCAAATAT 59.405 33.333 6.81 0.00 0.00 1.28
4796 5148 8.904712 CGTGCATTTAATGTCATACCAAATATG 58.095 33.333 6.81 0.00 41.99 1.78
4797 5149 9.964303 GTGCATTTAATGTCATACCAAATATGA 57.036 29.630 6.81 0.00 46.19 2.15
4805 5157 3.563808 TCATACCAAATATGAACGGCAGC 59.436 43.478 0.00 0.00 45.53 5.25
4806 5158 1.832883 ACCAAATATGAACGGCAGCA 58.167 45.000 0.00 0.00 0.00 4.41
4807 5159 1.472480 ACCAAATATGAACGGCAGCAC 59.528 47.619 0.00 0.00 0.00 4.40
4808 5160 1.745087 CCAAATATGAACGGCAGCACT 59.255 47.619 0.00 0.00 0.00 4.40
4809 5161 2.942376 CCAAATATGAACGGCAGCACTA 59.058 45.455 0.00 0.00 0.00 2.74
4810 5162 3.376859 CCAAATATGAACGGCAGCACTAA 59.623 43.478 0.00 0.00 0.00 2.24
4811 5163 4.496341 CCAAATATGAACGGCAGCACTAAG 60.496 45.833 0.00 0.00 0.00 2.18
4812 5164 1.651987 TATGAACGGCAGCACTAAGC 58.348 50.000 0.00 0.00 46.19 3.09
4827 5179 6.867662 GCACTAAGCATGTAATTCACCTAT 57.132 37.500 0.00 0.00 44.79 2.57
4888 5243 6.749139 AGACTATCTAATAACAGCGATTGCA 58.251 36.000 7.90 0.00 46.23 4.08
4889 5244 6.642950 AGACTATCTAATAACAGCGATTGCAC 59.357 38.462 7.90 0.00 46.23 4.57
4902 5257 3.181524 GCGATTGCACGTACACATTTACT 60.182 43.478 0.00 0.00 42.15 2.24
4904 5259 4.491924 CGATTGCACGTACACATTTACTCC 60.492 45.833 0.00 0.00 0.00 3.85
4909 5264 6.167685 TGCACGTACACATTTACTCCTTTAT 58.832 36.000 0.00 0.00 0.00 1.40
4910 5265 7.321908 TGCACGTACACATTTACTCCTTTATA 58.678 34.615 0.00 0.00 0.00 0.98
4911 5266 7.490079 TGCACGTACACATTTACTCCTTTATAG 59.510 37.037 0.00 0.00 0.00 1.31
4912 5267 7.703621 GCACGTACACATTTACTCCTTTATAGA 59.296 37.037 0.00 0.00 0.00 1.98
4913 5268 9.577110 CACGTACACATTTACTCCTTTATAGAA 57.423 33.333 0.00 0.00 0.00 2.10
4938 5293 9.866798 AAAGGAGATAAAATGAGAAATCTTTGC 57.133 29.630 0.00 0.00 0.00 3.68
4939 5294 8.005192 AGGAGATAAAATGAGAAATCTTTGCC 57.995 34.615 0.00 0.00 0.00 4.52
4940 5295 7.616935 AGGAGATAAAATGAGAAATCTTTGCCA 59.383 33.333 0.00 0.00 0.00 4.92
4941 5296 8.419442 GGAGATAAAATGAGAAATCTTTGCCAT 58.581 33.333 0.00 0.00 0.00 4.40
4942 5297 9.460906 GAGATAAAATGAGAAATCTTTGCCATC 57.539 33.333 0.00 0.00 0.00 3.51
4943 5298 8.419442 AGATAAAATGAGAAATCTTTGCCATCC 58.581 33.333 0.00 0.00 0.00 3.51
4944 5299 6.363167 AAAATGAGAAATCTTTGCCATCCA 57.637 33.333 0.00 0.00 0.00 3.41
4945 5300 6.363167 AAATGAGAAATCTTTGCCATCCAA 57.637 33.333 0.00 0.00 0.00 3.53
4946 5301 6.555463 AATGAGAAATCTTTGCCATCCAAT 57.445 33.333 0.00 0.00 32.49 3.16
4947 5302 6.555463 ATGAGAAATCTTTGCCATCCAATT 57.445 33.333 0.00 0.00 32.49 2.32
4948 5303 6.363167 TGAGAAATCTTTGCCATCCAATTT 57.637 33.333 0.00 0.00 32.49 1.82
4949 5304 6.167685 TGAGAAATCTTTGCCATCCAATTTG 58.832 36.000 0.00 0.00 32.49 2.32
4950 5305 5.493809 AGAAATCTTTGCCATCCAATTTGG 58.506 37.500 9.28 9.28 39.43 3.28
4951 5306 4.914177 AATCTTTGCCATCCAATTTGGT 57.086 36.364 14.98 0.40 39.03 3.67
4952 5307 4.914177 ATCTTTGCCATCCAATTTGGTT 57.086 36.364 14.98 4.24 39.03 3.67
4953 5308 6.371595 AATCTTTGCCATCCAATTTGGTTA 57.628 33.333 14.98 0.00 39.03 2.85
4954 5309 5.404466 TCTTTGCCATCCAATTTGGTTAG 57.596 39.130 14.98 6.22 39.03 2.34
4955 5310 5.083122 TCTTTGCCATCCAATTTGGTTAGA 58.917 37.500 14.98 4.02 39.03 2.10
4956 5311 5.541868 TCTTTGCCATCCAATTTGGTTAGAA 59.458 36.000 14.98 0.00 39.03 2.10
4957 5312 6.213195 TCTTTGCCATCCAATTTGGTTAGAAT 59.787 34.615 14.98 0.00 39.03 2.40
4958 5313 7.398618 TCTTTGCCATCCAATTTGGTTAGAATA 59.601 33.333 14.98 0.00 39.03 1.75
4959 5314 7.673641 TTGCCATCCAATTTGGTTAGAATAT 57.326 32.000 14.98 0.00 39.03 1.28
4960 5315 7.673641 TGCCATCCAATTTGGTTAGAATATT 57.326 32.000 14.98 0.00 39.03 1.28
4961 5316 7.499292 TGCCATCCAATTTGGTTAGAATATTG 58.501 34.615 14.98 0.00 39.03 1.90
4962 5317 7.125507 TGCCATCCAATTTGGTTAGAATATTGT 59.874 33.333 14.98 0.00 39.03 2.71
4963 5318 7.439056 GCCATCCAATTTGGTTAGAATATTGTG 59.561 37.037 14.98 0.00 39.03 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.014326 AGACAAATCTTATATGCGGAGTAGTGA 59.986 37.037 0.00 0.00 0.00 3.41
1 2 7.115520 CAGACAAATCTTATATGCGGAGTAGTG 59.884 40.741 0.00 0.00 30.42 2.74
2 3 7.014326 TCAGACAAATCTTATATGCGGAGTAGT 59.986 37.037 0.00 0.00 30.42 2.73
3 4 7.371159 TCAGACAAATCTTATATGCGGAGTAG 58.629 38.462 0.00 0.00 30.42 2.57
4 5 7.284919 TCAGACAAATCTTATATGCGGAGTA 57.715 36.000 0.00 0.00 30.42 2.59
7 8 7.714813 TGATTTCAGACAAATCTTATATGCGGA 59.285 33.333 8.21 0.00 37.50 5.54
8 9 7.864686 TGATTTCAGACAAATCTTATATGCGG 58.135 34.615 8.21 0.00 37.50 5.69
9 10 9.378597 CTTGATTTCAGACAAATCTTATATGCG 57.621 33.333 8.21 0.00 37.50 4.73
10 11 9.178427 GCTTGATTTCAGACAAATCTTATATGC 57.822 33.333 8.21 0.32 37.50 3.14
14 15 8.465201 GGAAGCTTGATTTCAGACAAATCTTAT 58.535 33.333 2.10 0.00 37.50 1.73
15 16 7.448161 TGGAAGCTTGATTTCAGACAAATCTTA 59.552 33.333 2.10 0.00 37.50 2.10
16 17 6.266103 TGGAAGCTTGATTTCAGACAAATCTT 59.734 34.615 2.10 0.00 37.50 2.40
17 18 5.771666 TGGAAGCTTGATTTCAGACAAATCT 59.228 36.000 2.10 0.00 37.50 2.40
18 19 6.017400 TGGAAGCTTGATTTCAGACAAATC 57.983 37.500 2.10 0.89 37.21 2.17
19 20 6.600882 ATGGAAGCTTGATTTCAGACAAAT 57.399 33.333 2.10 0.00 0.00 2.32
20 21 7.523293 TTATGGAAGCTTGATTTCAGACAAA 57.477 32.000 2.10 0.00 0.00 2.83
21 22 7.231317 ACTTTATGGAAGCTTGATTTCAGACAA 59.769 33.333 2.10 0.00 39.04 3.18
22 23 6.716628 ACTTTATGGAAGCTTGATTTCAGACA 59.283 34.615 2.10 0.00 39.04 3.41
23 24 7.150783 ACTTTATGGAAGCTTGATTTCAGAC 57.849 36.000 2.10 0.00 39.04 3.51
24 25 7.765695 AACTTTATGGAAGCTTGATTTCAGA 57.234 32.000 2.10 0.00 39.04 3.27
25 26 8.084073 TCAAACTTTATGGAAGCTTGATTTCAG 58.916 33.333 2.10 0.00 42.51 3.02
26 27 7.867403 GTCAAACTTTATGGAAGCTTGATTTCA 59.133 33.333 2.10 0.00 46.42 2.69
27 28 7.329471 GGTCAAACTTTATGGAAGCTTGATTTC 59.671 37.037 2.10 0.00 46.42 2.17
28 29 7.154656 GGTCAAACTTTATGGAAGCTTGATTT 58.845 34.615 2.10 0.00 46.42 2.17
29 30 6.267471 TGGTCAAACTTTATGGAAGCTTGATT 59.733 34.615 2.10 0.00 46.42 2.57
30 31 5.774690 TGGTCAAACTTTATGGAAGCTTGAT 59.225 36.000 2.10 0.00 46.42 2.57
31 32 5.136828 TGGTCAAACTTTATGGAAGCTTGA 58.863 37.500 2.10 5.77 44.18 3.02
32 33 5.452078 TGGTCAAACTTTATGGAAGCTTG 57.548 39.130 2.10 0.00 40.94 4.01
33 34 5.842907 GTTGGTCAAACTTTATGGAAGCTT 58.157 37.500 0.00 0.00 39.04 3.74
34 35 5.453567 GTTGGTCAAACTTTATGGAAGCT 57.546 39.130 0.00 0.00 39.04 3.74
87 88 9.453572 GGGATGCATCTAATAATAGTGATTTCA 57.546 33.333 25.28 0.00 0.00 2.69
125 126 8.458573 ACAACACCAAAGTTAGACAAATATGA 57.541 30.769 0.00 0.00 0.00 2.15
128 129 9.787435 ATCTACAACACCAAAGTTAGACAAATA 57.213 29.630 0.00 0.00 0.00 1.40
130 131 7.554835 ACATCTACAACACCAAAGTTAGACAAA 59.445 33.333 0.00 0.00 0.00 2.83
135 136 7.490962 TCAACATCTACAACACCAAAGTTAG 57.509 36.000 0.00 0.00 0.00 2.34
143 144 7.812191 TGCAAAAATATCAACATCTACAACACC 59.188 33.333 0.00 0.00 0.00 4.16
242 249 6.258507 GGTCAATTGGTGATCCATTTATTTGC 59.741 38.462 5.42 0.00 43.91 3.68
243 250 7.329499 TGGTCAATTGGTGATCCATTTATTTG 58.671 34.615 5.42 0.00 43.91 2.32
259 266 6.481976 TGCGGTAGTATATCTTTGGTCAATTG 59.518 38.462 0.00 0.00 0.00 2.32
420 515 2.738743 CCCCATAAAACATGCTCCTGT 58.261 47.619 0.00 0.00 0.00 4.00
443 546 7.827729 AGAGTTTTGCCGTATATACTCCTTTTT 59.172 33.333 11.05 0.00 34.10 1.94
444 547 7.336396 AGAGTTTTGCCGTATATACTCCTTTT 58.664 34.615 11.05 0.00 34.10 2.27
445 548 6.885922 AGAGTTTTGCCGTATATACTCCTTT 58.114 36.000 11.05 0.00 34.10 3.11
446 549 6.481434 AGAGTTTTGCCGTATATACTCCTT 57.519 37.500 11.05 0.00 34.10 3.36
447 550 6.481434 AAGAGTTTTGCCGTATATACTCCT 57.519 37.500 11.05 0.00 34.10 3.69
448 551 8.652810 TTTAAGAGTTTTGCCGTATATACTCC 57.347 34.615 11.05 2.58 34.10 3.85
526 629 1.571215 AAAAATCGTGGCGGTCGGTC 61.571 55.000 0.00 0.00 0.00 4.79
527 630 1.571215 GAAAAATCGTGGCGGTCGGT 61.571 55.000 0.00 0.00 0.00 4.69
528 631 1.133869 GAAAAATCGTGGCGGTCGG 59.866 57.895 0.00 0.00 0.00 4.79
529 632 0.179225 CTGAAAAATCGTGGCGGTCG 60.179 55.000 0.00 0.00 0.00 4.79
530 633 0.454452 GCTGAAAAATCGTGGCGGTC 60.454 55.000 0.00 0.00 0.00 4.79
531 634 1.169661 TGCTGAAAAATCGTGGCGGT 61.170 50.000 0.00 0.00 0.00 5.68
532 635 0.454957 CTGCTGAAAAATCGTGGCGG 60.455 55.000 0.00 0.00 0.00 6.13
636 748 4.012895 GTGCCAGCGTTCGTGGTG 62.013 66.667 12.46 0.00 37.40 4.17
637 749 4.235762 AGTGCCAGCGTTCGTGGT 62.236 61.111 12.46 0.00 37.40 4.16
638 750 3.716006 CAGTGCCAGCGTTCGTGG 61.716 66.667 8.59 8.59 38.21 4.94
639 751 2.661537 TCAGTGCCAGCGTTCGTG 60.662 61.111 0.00 0.00 0.00 4.35
640 752 2.661866 GTCAGTGCCAGCGTTCGT 60.662 61.111 0.00 0.00 0.00 3.85
641 753 3.414700 GGTCAGTGCCAGCGTTCG 61.415 66.667 0.00 0.00 0.00 3.95
642 754 2.280797 TGGTCAGTGCCAGCGTTC 60.281 61.111 2.57 0.00 33.97 3.95
643 755 2.591715 GTGGTCAGTGCCAGCGTT 60.592 61.111 6.54 0.00 39.53 4.84
644 756 4.969196 CGTGGTCAGTGCCAGCGT 62.969 66.667 6.54 0.00 39.53 5.07
645 757 3.939837 ATCGTGGTCAGTGCCAGCG 62.940 63.158 6.54 11.98 39.53 5.18
646 758 2.046892 ATCGTGGTCAGTGCCAGC 60.047 61.111 6.54 2.65 39.53 4.85
647 759 1.448540 GGATCGTGGTCAGTGCCAG 60.449 63.158 6.54 2.84 39.53 4.85
648 760 1.913262 AGGATCGTGGTCAGTGCCA 60.913 57.895 2.57 2.57 35.93 4.92
649 761 1.448540 CAGGATCGTGGTCAGTGCC 60.449 63.158 7.54 0.00 0.00 5.01
650 762 2.103042 GCAGGATCGTGGTCAGTGC 61.103 63.158 16.66 0.00 0.00 4.40
651 763 1.448540 GGCAGGATCGTGGTCAGTG 60.449 63.158 16.66 0.00 0.00 3.66
652 764 2.660064 GGGCAGGATCGTGGTCAGT 61.660 63.158 16.66 0.00 0.00 3.41
653 765 2.187946 GGGCAGGATCGTGGTCAG 59.812 66.667 16.66 0.00 0.00 3.51
654 766 2.284625 AGGGCAGGATCGTGGTCA 60.285 61.111 16.66 0.00 0.00 4.02
655 767 2.022240 GAGAGGGCAGGATCGTGGTC 62.022 65.000 16.66 1.37 0.00 4.02
656 768 2.039624 AGAGGGCAGGATCGTGGT 59.960 61.111 16.66 0.00 0.00 4.16
657 769 2.801631 GGAGAGGGCAGGATCGTGG 61.802 68.421 16.66 0.00 0.00 4.94
658 770 2.801631 GGGAGAGGGCAGGATCGTG 61.802 68.421 11.07 11.07 0.00 4.35
659 771 2.444895 GGGAGAGGGCAGGATCGT 60.445 66.667 0.00 0.00 0.00 3.73
660 772 2.123077 AGGGAGAGGGCAGGATCG 60.123 66.667 0.00 0.00 0.00 3.69
661 773 2.146061 CCAGGGAGAGGGCAGGATC 61.146 68.421 0.00 0.00 0.00 3.36
662 774 2.040043 CCAGGGAGAGGGCAGGAT 60.040 66.667 0.00 0.00 0.00 3.24
668 780 4.087892 CACGTGCCAGGGAGAGGG 62.088 72.222 0.82 0.00 0.00 4.30
1303 1557 6.430308 AGATCGCATGCAAATATTCTCTGAAT 59.570 34.615 19.57 0.00 0.00 2.57
1337 1595 2.416747 TCCTTGATCGTGTTCAGCAAG 58.583 47.619 0.00 0.00 36.58 4.01
1338 1596 2.542020 TCCTTGATCGTGTTCAGCAA 57.458 45.000 0.00 0.00 0.00 3.91
1339 1597 2.768253 ATCCTTGATCGTGTTCAGCA 57.232 45.000 0.00 0.00 0.00 4.41
1363 1621 5.829233 AATCATACTCGTGCAACATATCG 57.171 39.130 0.00 0.00 35.74 2.92
1367 1628 6.985188 AGTAAAATCATACTCGTGCAACAT 57.015 33.333 0.00 0.00 35.74 2.71
1389 1650 8.027771 CGGATAAGGTGTTTATAAGCCTACTAG 58.972 40.741 5.96 0.00 32.09 2.57
1390 1651 7.725397 TCGGATAAGGTGTTTATAAGCCTACTA 59.275 37.037 5.96 0.00 32.09 1.82
1391 1652 6.552350 TCGGATAAGGTGTTTATAAGCCTACT 59.448 38.462 5.96 0.00 32.09 2.57
1392 1653 6.752168 TCGGATAAGGTGTTTATAAGCCTAC 58.248 40.000 5.96 0.00 32.09 3.18
1397 1658 7.866393 AGAACGATCGGATAAGGTGTTTATAAG 59.134 37.037 20.98 0.00 32.09 1.73
1465 1732 3.224324 GTAGCCCGCCATCTCCGA 61.224 66.667 0.00 0.00 0.00 4.55
1524 1791 7.721399 AGAGGCAAATTAAGGATGTATTCGAAT 59.279 33.333 16.15 16.15 0.00 3.34
1566 1835 2.173382 CGGCTGCGTTTGTGCTAC 59.827 61.111 0.00 0.00 35.36 3.58
1591 1860 2.168313 TGCAATCTGCTATCGGAAGTGA 59.832 45.455 0.00 0.00 45.31 3.41
1597 1892 2.469274 AGGATGCAATCTGCTATCGG 57.531 50.000 0.00 0.00 45.31 4.18
1634 1929 4.119136 CTGGATACACATGTGTTCGCATA 58.881 43.478 34.66 17.42 46.17 3.14
1639 1934 4.870426 CACTACCTGGATACACATGTGTTC 59.130 45.833 34.66 27.28 46.17 3.18
1657 1964 2.287373 CGTCGTACTCATCCTCCACTAC 59.713 54.545 0.00 0.00 0.00 2.73
1668 1975 2.429478 TCATCAAGGTCGTCGTACTCA 58.571 47.619 0.00 0.00 0.00 3.41
1704 2011 0.460109 CATTGTCGCCCTCATCGTCA 60.460 55.000 0.00 0.00 0.00 4.35
1729 2036 1.688197 CAGCTCCTCTTCATCCTCCTC 59.312 57.143 0.00 0.00 0.00 3.71
1737 2044 2.283894 TCGGGCAGCTCCTCTTCA 60.284 61.111 0.00 0.00 34.39 3.02
1752 2059 2.293122 CACTTCTATCTCCTCAGCCTCG 59.707 54.545 0.00 0.00 0.00 4.63
1765 2072 5.125739 CCTCGTACTGTTCTTCCACTTCTAT 59.874 44.000 0.00 0.00 0.00 1.98
1780 2087 2.421751 TCCTCTTCCTCCTCGTACTG 57.578 55.000 0.00 0.00 0.00 2.74
1785 2092 2.687935 CTCTTCTTCCTCTTCCTCCTCG 59.312 54.545 0.00 0.00 0.00 4.63
1887 2194 0.544833 TAGGGTTCCCGTAGTTGGCA 60.545 55.000 1.91 0.00 0.00 4.92
1891 2198 1.192428 CAGCTAGGGTTCCCGTAGTT 58.808 55.000 10.66 3.36 42.12 2.24
1981 2288 6.313905 CGTTAACAACTGAAAGAGGATGCTAT 59.686 38.462 6.39 0.00 37.43 2.97
2015 2323 4.808558 TGCCAAATCTGCAACAAGTTATC 58.191 39.130 0.00 0.00 35.40 1.75
2143 2451 9.082313 ACTTCAGGATCAAAACAGTTTAATCAT 57.918 29.630 17.15 11.00 0.00 2.45
2245 2554 1.412710 ACTTGGCTGTGTCTTCGAAGA 59.587 47.619 23.74 23.74 0.00 2.87
2307 2616 5.532557 GATTGAAAGTTTGGAACCCTTGAG 58.467 41.667 0.00 0.00 0.00 3.02
2309 2618 4.037446 TCGATTGAAAGTTTGGAACCCTTG 59.963 41.667 0.00 0.00 0.00 3.61
2317 2626 6.007936 TGGTAATGTCGATTGAAAGTTTGG 57.992 37.500 0.00 0.00 0.00 3.28
2318 2627 6.898041 TCTGGTAATGTCGATTGAAAGTTTG 58.102 36.000 0.00 0.00 0.00 2.93
2319 2628 7.687941 ATCTGGTAATGTCGATTGAAAGTTT 57.312 32.000 0.00 0.00 0.00 2.66
2320 2629 7.174946 ACAATCTGGTAATGTCGATTGAAAGTT 59.825 33.333 15.31 0.00 43.19 2.66
2321 2630 6.655003 ACAATCTGGTAATGTCGATTGAAAGT 59.345 34.615 15.31 0.00 43.19 2.66
2322 2631 7.076842 ACAATCTGGTAATGTCGATTGAAAG 57.923 36.000 15.31 0.00 43.19 2.62
2324 2633 8.611757 CATAACAATCTGGTAATGTCGATTGAA 58.388 33.333 15.31 5.79 43.19 2.69
2325 2634 7.254761 GCATAACAATCTGGTAATGTCGATTGA 60.255 37.037 15.31 0.00 43.19 2.57
2328 2637 5.177511 CGCATAACAATCTGGTAATGTCGAT 59.822 40.000 0.00 0.00 0.00 3.59
2330 2639 4.318760 CCGCATAACAATCTGGTAATGTCG 60.319 45.833 0.00 0.00 0.00 4.35
2331 2640 4.574828 ACCGCATAACAATCTGGTAATGTC 59.425 41.667 0.00 0.00 0.00 3.06
2332 2641 4.523083 ACCGCATAACAATCTGGTAATGT 58.477 39.130 0.00 0.00 0.00 2.71
2333 2642 5.065859 TGAACCGCATAACAATCTGGTAATG 59.934 40.000 0.00 0.00 0.00 1.90
2338 2652 4.433186 TTTGAACCGCATAACAATCTGG 57.567 40.909 0.00 0.00 0.00 3.86
2339 2653 5.286797 CACATTTGAACCGCATAACAATCTG 59.713 40.000 0.00 0.00 0.00 2.90
2341 2655 5.398169 TCACATTTGAACCGCATAACAATC 58.602 37.500 0.00 0.00 0.00 2.67
2342 2656 5.048083 ACTCACATTTGAACCGCATAACAAT 60.048 36.000 0.00 0.00 0.00 2.71
2352 2666 7.756722 CCTCAAATTATCACTCACATTTGAACC 59.243 37.037 7.40 0.00 42.33 3.62
2356 2670 7.161773 ACCCTCAAATTATCACTCACATTTG 57.838 36.000 0.00 0.00 37.77 2.32
2358 2672 7.309990 CCAAACCCTCAAATTATCACTCACATT 60.310 37.037 0.00 0.00 0.00 2.71
2365 2693 4.799564 TGCCAAACCCTCAAATTATCAC 57.200 40.909 0.00 0.00 0.00 3.06
2369 2697 4.202398 TGCAAATGCCAAACCCTCAAATTA 60.202 37.500 2.46 0.00 41.18 1.40
2376 2704 0.763986 ACCTGCAAATGCCAAACCCT 60.764 50.000 2.46 0.00 41.18 4.34
2414 2743 0.035458 AGTCCCTGTTCTTGCGAAGG 59.965 55.000 0.00 0.00 0.00 3.46
2420 2749 3.576648 GTTCGAGTAGTCCCTGTTCTTG 58.423 50.000 0.00 0.00 0.00 3.02
2421 2750 2.561858 GGTTCGAGTAGTCCCTGTTCTT 59.438 50.000 0.00 0.00 0.00 2.52
2465 2794 0.955919 GTTCCTCTGTTGGGGAAGCG 60.956 60.000 0.00 0.00 41.55 4.68
2466 2795 0.110486 TGTTCCTCTGTTGGGGAAGC 59.890 55.000 0.00 0.00 41.55 3.86
2469 2798 0.472471 GTGTGTTCCTCTGTTGGGGA 59.528 55.000 0.00 0.00 0.00 4.81
2485 2814 4.460382 CCATGACAGGCTTATTTTCTGTGT 59.540 41.667 0.00 0.00 41.24 3.72
2486 2815 4.990257 CCATGACAGGCTTATTTTCTGTG 58.010 43.478 0.00 0.00 41.24 3.66
2512 2841 7.450074 ACTGTGTTCATACTCACCAGATTTTA 58.550 34.615 0.00 0.00 34.14 1.52
2533 2862 2.769095 GGGCTCTGGAAAGATCTACTGT 59.231 50.000 0.00 0.00 0.00 3.55
2535 2864 3.121929 TGGGCTCTGGAAAGATCTACT 57.878 47.619 0.00 0.00 0.00 2.57
2549 2878 6.589907 ACATAAATTCGAATTTGTTTGGGCTC 59.410 34.615 35.21 0.00 38.90 4.70
2555 2884 7.945033 AGCACACATAAATTCGAATTTGTTT 57.055 28.000 35.21 23.98 38.90 2.83
2565 2894 9.123709 TCAAACGAATTAAGCACACATAAATTC 57.876 29.630 0.00 0.00 34.64 2.17
2566 2895 8.911662 GTCAAACGAATTAAGCACACATAAATT 58.088 29.630 0.00 0.00 0.00 1.82
2567 2896 8.079203 TGTCAAACGAATTAAGCACACATAAAT 58.921 29.630 0.00 0.00 0.00 1.40
2568 2897 7.418408 TGTCAAACGAATTAAGCACACATAAA 58.582 30.769 0.00 0.00 0.00 1.40
2571 2900 5.431420 TGTCAAACGAATTAAGCACACAT 57.569 34.783 0.00 0.00 0.00 3.21
2573 2902 9.716507 ATATAATGTCAAACGAATTAAGCACAC 57.283 29.630 0.00 0.00 0.00 3.82
2598 2927 7.147983 GGATGAGCTTCGACTTCTATACCATAT 60.148 40.741 0.00 0.00 0.00 1.78
2602 2931 4.614078 CGGATGAGCTTCGACTTCTATACC 60.614 50.000 0.00 0.00 0.00 2.73
2603 2932 4.213694 TCGGATGAGCTTCGACTTCTATAC 59.786 45.833 0.00 0.00 0.00 1.47
2604 2933 4.386711 TCGGATGAGCTTCGACTTCTATA 58.613 43.478 0.00 0.00 0.00 1.31
2605 2934 3.215151 TCGGATGAGCTTCGACTTCTAT 58.785 45.455 0.00 0.00 0.00 1.98
2610 2943 1.393603 TCATCGGATGAGCTTCGACT 58.606 50.000 16.44 0.00 35.70 4.18
2624 2957 3.566038 CAGAATGCTTCGTCTTCATCG 57.434 47.619 0.00 0.00 34.02 3.84
2640 2973 1.662517 TCTTGTTTGTCGCAGCAGAA 58.337 45.000 0.00 0.00 0.00 3.02
2666 2999 0.770499 TCTGGCAGGATGGTTTGTGA 59.230 50.000 15.73 0.00 35.86 3.58
2714 3047 0.800300 CTTGTTTGTTTGCGCGTGGT 60.800 50.000 8.43 0.00 0.00 4.16
2717 3050 0.800300 CACCTTGTTTGTTTGCGCGT 60.800 50.000 8.43 0.00 0.00 6.01
2720 3053 1.134175 AGACCACCTTGTTTGTTTGCG 59.866 47.619 0.00 0.00 0.00 4.85
2724 3057 3.545703 CTGAGAGACCACCTTGTTTGTT 58.454 45.455 0.00 0.00 0.00 2.83
2725 3058 2.158755 CCTGAGAGACCACCTTGTTTGT 60.159 50.000 0.00 0.00 0.00 2.83
2726 3059 2.158755 ACCTGAGAGACCACCTTGTTTG 60.159 50.000 0.00 0.00 0.00 2.93
2799 3132 1.836999 CGTTGGGTGGTCTGGATCCA 61.837 60.000 15.27 15.27 0.00 3.41
2811 3144 3.663815 TTTGGTGGTGCCGTTGGGT 62.664 57.895 0.00 0.00 41.21 4.51
2946 3279 2.527624 TGCTGCCTCTGACCCTGT 60.528 61.111 0.00 0.00 0.00 4.00
3425 3763 1.734137 CGGATCGAGGTCGGTGAAT 59.266 57.895 0.00 0.00 40.29 2.57
3445 3783 1.471153 GGGCTAGAACTACTTCACCGC 60.471 57.143 0.00 0.00 0.00 5.68
3644 3983 5.124645 TGTACTTTTCGGTAAGAAGGCAAA 58.875 37.500 0.00 0.00 40.40 3.68
3698 4037 3.658757 TCAGCATGGTTTAGGCAAAAC 57.341 42.857 0.00 5.57 45.70 2.43
3729 4068 4.671831 TGGATGTCCAAAGCAAATAAGGA 58.328 39.130 0.00 0.00 44.35 3.36
3944 4285 6.542370 TCACGTCTTGTACTCATGAGATATGA 59.458 38.462 29.27 16.73 0.00 2.15
3967 4309 7.148323 CCAATATGAACCGTCAAAATGTAGTCA 60.148 37.037 0.00 0.00 37.30 3.41
3992 4334 4.584327 AAAACTACCATGTTGCAGAACC 57.416 40.909 0.00 0.00 0.00 3.62
4149 4491 6.445357 TTGTCCACCTCAGTTTCTTTAAAC 57.555 37.500 0.00 0.00 44.47 2.01
4218 4560 9.256477 CCTTTTTGTACTTTTGGTTAAAGATCC 57.744 33.333 4.42 0.00 45.00 3.36
4242 4584 6.097412 AGTTGAAAGCATCTCAAAACTTTCCT 59.903 34.615 10.77 1.12 44.67 3.36
4243 4585 6.276091 AGTTGAAAGCATCTCAAAACTTTCC 58.724 36.000 10.77 0.00 44.67 3.13
4244 4586 7.704047 AGAAGTTGAAAGCATCTCAAAACTTTC 59.296 33.333 7.26 7.26 45.22 2.62
4245 4587 7.490402 CAGAAGTTGAAAGCATCTCAAAACTTT 59.510 33.333 0.00 0.00 34.68 2.66
4246 4588 6.976925 CAGAAGTTGAAAGCATCTCAAAACTT 59.023 34.615 0.00 0.00 34.68 2.66
4247 4589 6.501781 CAGAAGTTGAAAGCATCTCAAAACT 58.498 36.000 0.00 0.00 34.68 2.66
4248 4590 5.174579 GCAGAAGTTGAAAGCATCTCAAAAC 59.825 40.000 0.00 0.00 34.68 2.43
4252 4594 2.481568 CGCAGAAGTTGAAAGCATCTCA 59.518 45.455 0.00 0.00 0.00 3.27
4279 4621 2.103537 TAAAACTCGTAGCCCAAGCC 57.896 50.000 0.00 0.00 41.25 4.35
4327 4669 9.778741 TCAATCTGTCTTAATATAATGTCCACC 57.221 33.333 0.00 0.00 0.00 4.61
4338 4680 9.671279 TGCATTTTCTCTCAATCTGTCTTAATA 57.329 29.630 0.00 0.00 0.00 0.98
4339 4681 8.571461 TGCATTTTCTCTCAATCTGTCTTAAT 57.429 30.769 0.00 0.00 0.00 1.40
4499 4851 8.897752 GTTTGATGGCTTAGATAAGTTGAATCT 58.102 33.333 1.82 0.00 37.46 2.40
4509 4861 6.000246 TGACATGGTTTGATGGCTTAGATA 58.000 37.500 0.00 0.00 31.94 1.98
4511 4863 4.263462 ACTGACATGGTTTGATGGCTTAGA 60.263 41.667 0.00 0.00 31.94 2.10
4512 4864 4.012374 ACTGACATGGTTTGATGGCTTAG 58.988 43.478 0.00 0.00 31.94 2.18
4513 4865 4.009675 GACTGACATGGTTTGATGGCTTA 58.990 43.478 0.00 0.00 31.94 3.09
4514 4866 2.821969 GACTGACATGGTTTGATGGCTT 59.178 45.455 0.00 0.00 31.94 4.35
4516 4868 2.161855 TGACTGACATGGTTTGATGGC 58.838 47.619 0.00 0.00 0.00 4.40
4518 4870 4.392754 TCGATTGACTGACATGGTTTGATG 59.607 41.667 0.00 0.00 0.00 3.07
4519 4871 4.393062 GTCGATTGACTGACATGGTTTGAT 59.607 41.667 5.79 0.00 42.08 2.57
4520 4872 3.745975 GTCGATTGACTGACATGGTTTGA 59.254 43.478 5.79 0.00 42.08 2.69
4521 4873 3.120199 GGTCGATTGACTGACATGGTTTG 60.120 47.826 12.89 0.00 44.83 2.93
4522 4874 3.074412 GGTCGATTGACTGACATGGTTT 58.926 45.455 12.89 0.00 44.83 3.27
4523 4875 2.303022 AGGTCGATTGACTGACATGGTT 59.697 45.455 12.89 0.00 44.83 3.67
4524 4876 1.902508 AGGTCGATTGACTGACATGGT 59.097 47.619 12.89 0.00 44.83 3.55
4525 4877 2.680312 AGGTCGATTGACTGACATGG 57.320 50.000 12.89 0.00 44.83 3.66
4526 4878 4.377839 AGTAGGTCGATTGACTGACATG 57.622 45.455 12.89 0.00 44.83 3.21
4527 4879 4.338682 GGTAGTAGGTCGATTGACTGACAT 59.661 45.833 12.89 4.76 44.83 3.06
4528 4880 3.693085 GGTAGTAGGTCGATTGACTGACA 59.307 47.826 12.89 1.09 44.83 3.58
4529 4881 3.946558 AGGTAGTAGGTCGATTGACTGAC 59.053 47.826 12.89 10.60 44.83 3.51
4530 4882 4.197750 GAGGTAGTAGGTCGATTGACTGA 58.802 47.826 12.89 0.00 44.83 3.41
4531 4883 3.315749 GGAGGTAGTAGGTCGATTGACTG 59.684 52.174 12.89 0.00 44.83 3.51
4532 4884 3.553904 GGAGGTAGTAGGTCGATTGACT 58.446 50.000 12.89 2.19 44.83 3.41
4533 4885 2.290093 CGGAGGTAGTAGGTCGATTGAC 59.710 54.545 4.31 4.31 44.72 3.18
4534 4886 2.092753 ACGGAGGTAGTAGGTCGATTGA 60.093 50.000 0.00 0.00 0.00 2.57
4535 4887 2.295885 ACGGAGGTAGTAGGTCGATTG 58.704 52.381 0.00 0.00 0.00 2.67
4536 4888 2.725221 ACGGAGGTAGTAGGTCGATT 57.275 50.000 0.00 0.00 0.00 3.34
4537 4889 2.725221 AACGGAGGTAGTAGGTCGAT 57.275 50.000 0.00 0.00 0.00 3.59
4538 4890 2.290260 TGAAACGGAGGTAGTAGGTCGA 60.290 50.000 0.00 0.00 0.00 4.20
4539 4891 2.086869 TGAAACGGAGGTAGTAGGTCG 58.913 52.381 0.00 0.00 0.00 4.79
4540 4892 3.087781 ACTGAAACGGAGGTAGTAGGTC 58.912 50.000 0.00 0.00 0.00 3.85
4541 4893 3.166560 ACTGAAACGGAGGTAGTAGGT 57.833 47.619 0.00 0.00 0.00 3.08
4542 4894 4.532314 AAACTGAAACGGAGGTAGTAGG 57.468 45.455 0.00 0.00 0.00 3.18
4543 4895 6.017400 TGTAAACTGAAACGGAGGTAGTAG 57.983 41.667 0.00 0.00 0.00 2.57
4544 4896 6.040842 ACTTGTAAACTGAAACGGAGGTAGTA 59.959 38.462 0.00 0.00 0.00 1.82
4545 4897 4.942761 TGTAAACTGAAACGGAGGTAGT 57.057 40.909 0.00 0.00 0.00 2.73
4546 4898 5.295152 ACTTGTAAACTGAAACGGAGGTAG 58.705 41.667 0.00 0.00 0.00 3.18
4547 4899 5.280654 ACTTGTAAACTGAAACGGAGGTA 57.719 39.130 0.00 0.00 0.00 3.08
4548 4900 4.124970 GACTTGTAAACTGAAACGGAGGT 58.875 43.478 0.00 0.00 0.00 3.85
4549 4901 3.497262 GGACTTGTAAACTGAAACGGAGG 59.503 47.826 0.00 0.00 0.00 4.30
4550 4902 4.377897 AGGACTTGTAAACTGAAACGGAG 58.622 43.478 0.00 0.00 0.00 4.63
4551 4903 4.411256 AGGACTTGTAAACTGAAACGGA 57.589 40.909 0.00 0.00 0.00 4.69
4552 4904 4.149396 CGTAGGACTTGTAAACTGAAACGG 59.851 45.833 0.00 0.00 0.00 4.44
4553 4905 4.741676 ACGTAGGACTTGTAAACTGAAACG 59.258 41.667 0.00 0.00 0.00 3.60
4554 4906 5.521372 ACACGTAGGACTTGTAAACTGAAAC 59.479 40.000 0.00 0.00 28.16 2.78
4555 4907 5.663456 ACACGTAGGACTTGTAAACTGAAA 58.337 37.500 0.00 0.00 28.16 2.69
4556 4908 5.266733 ACACGTAGGACTTGTAAACTGAA 57.733 39.130 0.00 0.00 28.16 3.02
4557 4909 4.924305 ACACGTAGGACTTGTAAACTGA 57.076 40.909 0.00 0.00 28.16 3.41
4558 4910 6.749118 GGTATACACGTAGGACTTGTAAACTG 59.251 42.308 5.01 0.00 36.60 3.16
4559 4911 6.660949 AGGTATACACGTAGGACTTGTAAACT 59.339 38.462 5.01 0.00 36.60 2.66
4560 4912 6.856895 AGGTATACACGTAGGACTTGTAAAC 58.143 40.000 5.01 0.00 36.60 2.01
4561 4913 8.046708 TCTAGGTATACACGTAGGACTTGTAAA 58.953 37.037 5.01 0.00 41.44 2.01
4562 4914 7.564793 TCTAGGTATACACGTAGGACTTGTAA 58.435 38.462 5.01 0.00 41.44 2.41
4563 4915 7.124573 TCTAGGTATACACGTAGGACTTGTA 57.875 40.000 5.01 0.00 41.44 2.41
4564 4916 5.994250 TCTAGGTATACACGTAGGACTTGT 58.006 41.667 5.01 0.00 41.44 3.16
4565 4917 7.361127 CAATCTAGGTATACACGTAGGACTTG 58.639 42.308 5.01 0.95 41.44 3.16
4566 4918 6.016443 GCAATCTAGGTATACACGTAGGACTT 60.016 42.308 5.01 0.00 41.44 3.01
4567 4919 5.472820 GCAATCTAGGTATACACGTAGGACT 59.527 44.000 5.01 0.00 41.44 3.85
4568 4920 5.335504 GGCAATCTAGGTATACACGTAGGAC 60.336 48.000 5.01 0.00 41.44 3.85
4569 4921 4.763793 GGCAATCTAGGTATACACGTAGGA 59.236 45.833 5.01 0.00 41.44 2.94
4570 4922 4.521639 TGGCAATCTAGGTATACACGTAGG 59.478 45.833 5.01 0.00 41.44 3.18
4571 4923 5.700722 TGGCAATCTAGGTATACACGTAG 57.299 43.478 5.01 2.90 42.13 3.51
4572 4924 6.659745 ATTGGCAATCTAGGTATACACGTA 57.340 37.500 6.96 0.00 0.00 3.57
4573 4925 5.546621 ATTGGCAATCTAGGTATACACGT 57.453 39.130 6.96 0.00 0.00 4.49
4574 4926 6.861065 AAATTGGCAATCTAGGTATACACG 57.139 37.500 14.04 0.00 0.00 4.49
4579 4931 9.247861 GGATGATAAAATTGGCAATCTAGGTAT 57.752 33.333 14.04 6.93 0.00 2.73
4580 4932 8.448008 AGGATGATAAAATTGGCAATCTAGGTA 58.552 33.333 14.04 2.41 0.00 3.08
4581 4933 7.300658 AGGATGATAAAATTGGCAATCTAGGT 58.699 34.615 14.04 0.00 0.00 3.08
4582 4934 7.771927 AGGATGATAAAATTGGCAATCTAGG 57.228 36.000 14.04 0.00 0.00 3.02
4621 4973 9.278978 ACTTTCAAAAGGTACAATTTTTGTGTT 57.721 25.926 19.81 8.30 42.20 3.32
4622 4974 8.840833 ACTTTCAAAAGGTACAATTTTTGTGT 57.159 26.923 19.81 15.98 42.20 3.72
4630 4982 8.847196 GGAGTTTCTACTTTCAAAAGGTACAAT 58.153 33.333 7.37 0.00 40.31 2.71
4631 4983 7.011669 CGGAGTTTCTACTTTCAAAAGGTACAA 59.988 37.037 7.37 0.00 40.31 2.41
4632 4984 6.480981 CGGAGTTTCTACTTTCAAAAGGTACA 59.519 38.462 7.37 0.00 40.31 2.90
4633 4985 6.703165 TCGGAGTTTCTACTTTCAAAAGGTAC 59.297 38.462 7.37 0.00 40.31 3.34
4634 4986 6.819284 TCGGAGTTTCTACTTTCAAAAGGTA 58.181 36.000 7.37 0.00 40.31 3.08
4635 4987 5.677567 TCGGAGTTTCTACTTTCAAAAGGT 58.322 37.500 7.37 0.00 40.31 3.50
4636 4988 6.260271 ACTTCGGAGTTTCTACTTTCAAAAGG 59.740 38.462 7.37 0.00 34.81 3.11
4637 4989 7.247929 ACTTCGGAGTTTCTACTTTCAAAAG 57.752 36.000 0.00 0.97 35.92 2.27
4638 4990 7.619964 AACTTCGGAGTTTCTACTTTCAAAA 57.380 32.000 2.29 0.00 43.48 2.44
4652 5004 9.457436 AAAATATACCAATACAAACTTCGGAGT 57.543 29.630 0.00 0.00 37.87 3.85
4686 5038 9.920946 ATTTGACCAACCTAATACAAGTCATAT 57.079 29.630 0.00 0.00 33.21 1.78
4687 5039 9.747898 AATTTGACCAACCTAATACAAGTCATA 57.252 29.630 0.00 0.00 33.21 2.15
4688 5040 8.522830 CAATTTGACCAACCTAATACAAGTCAT 58.477 33.333 0.00 0.00 33.21 3.06
4689 5041 7.721842 TCAATTTGACCAACCTAATACAAGTCA 59.278 33.333 0.00 0.00 0.00 3.41
4690 5042 8.021396 GTCAATTTGACCAACCTAATACAAGTC 58.979 37.037 17.07 0.00 41.37 3.01
4691 5043 7.308348 CGTCAATTTGACCAACCTAATACAAGT 60.308 37.037 20.87 0.00 44.20 3.16
4692 5044 7.021196 CGTCAATTTGACCAACCTAATACAAG 58.979 38.462 20.87 1.46 44.20 3.16
4693 5045 6.711194 TCGTCAATTTGACCAACCTAATACAA 59.289 34.615 20.87 0.00 44.20 2.41
4694 5046 6.231951 TCGTCAATTTGACCAACCTAATACA 58.768 36.000 20.87 0.00 44.20 2.29
4695 5047 6.730960 TCGTCAATTTGACCAACCTAATAC 57.269 37.500 20.87 0.00 44.20 1.89
4696 5048 7.335627 AGATCGTCAATTTGACCAACCTAATA 58.664 34.615 20.87 0.16 44.20 0.98
4697 5049 6.180472 AGATCGTCAATTTGACCAACCTAAT 58.820 36.000 20.87 6.17 44.20 1.73
4698 5050 5.556915 AGATCGTCAATTTGACCAACCTAA 58.443 37.500 20.87 2.23 44.20 2.69
4699 5051 5.160607 AGATCGTCAATTTGACCAACCTA 57.839 39.130 20.87 3.68 44.20 3.08
4700 5052 4.021102 AGATCGTCAATTTGACCAACCT 57.979 40.909 20.87 11.55 44.20 3.50
4701 5053 4.332819 CCTAGATCGTCAATTTGACCAACC 59.667 45.833 20.87 9.81 44.20 3.77
4702 5054 4.332819 CCCTAGATCGTCAATTTGACCAAC 59.667 45.833 20.87 9.60 44.20 3.77
4703 5055 4.513442 CCCTAGATCGTCAATTTGACCAA 58.487 43.478 20.87 11.64 44.20 3.67
4704 5056 3.118408 CCCCTAGATCGTCAATTTGACCA 60.118 47.826 20.87 11.17 44.20 4.02
4705 5057 3.118371 ACCCCTAGATCGTCAATTTGACC 60.118 47.826 20.87 9.44 44.20 4.02
4706 5058 4.138487 ACCCCTAGATCGTCAATTTGAC 57.862 45.455 17.76 17.76 43.65 3.18
4707 5059 4.202080 CGTACCCCTAGATCGTCAATTTGA 60.202 45.833 0.00 0.00 0.00 2.69
4708 5060 4.049186 CGTACCCCTAGATCGTCAATTTG 58.951 47.826 0.00 0.00 0.00 2.32
4709 5061 3.703052 ACGTACCCCTAGATCGTCAATTT 59.297 43.478 0.00 0.00 0.00 1.82
4710 5062 3.067742 CACGTACCCCTAGATCGTCAATT 59.932 47.826 0.00 0.00 32.47 2.32
4711 5063 2.621998 CACGTACCCCTAGATCGTCAAT 59.378 50.000 0.00 0.00 32.47 2.57
4712 5064 2.019249 CACGTACCCCTAGATCGTCAA 58.981 52.381 0.00 0.00 32.47 3.18
4713 5065 1.671979 CACGTACCCCTAGATCGTCA 58.328 55.000 0.00 0.00 32.47 4.35
4714 5066 0.310232 GCACGTACCCCTAGATCGTC 59.690 60.000 0.00 0.00 32.47 4.20
4715 5067 0.394762 TGCACGTACCCCTAGATCGT 60.395 55.000 0.00 0.00 35.12 3.73
4716 5068 0.030369 GTGCACGTACCCCTAGATCG 59.970 60.000 0.00 0.00 0.00 3.69
4717 5069 0.030369 CGTGCACGTACCCCTAGATC 59.970 60.000 30.50 0.00 34.11 2.75
4718 5070 2.012902 GCGTGCACGTACCCCTAGAT 62.013 60.000 36.80 0.00 42.22 1.98
4719 5071 2.703798 GCGTGCACGTACCCCTAGA 61.704 63.158 36.80 0.00 42.22 2.43
4720 5072 2.202703 GCGTGCACGTACCCCTAG 60.203 66.667 36.80 9.58 42.22 3.02
4721 5073 3.762247 GGCGTGCACGTACCCCTA 61.762 66.667 36.80 0.00 42.22 3.53
4725 5077 2.768503 TTACAGGGCGTGCACGTACC 62.769 60.000 36.80 34.88 42.22 3.34
4726 5078 0.945265 TTTACAGGGCGTGCACGTAC 60.945 55.000 36.80 28.93 42.22 3.67
4727 5079 0.945265 GTTTACAGGGCGTGCACGTA 60.945 55.000 36.80 20.26 42.22 3.57
4728 5080 2.109387 TTTACAGGGCGTGCACGT 59.891 55.556 36.80 21.32 42.22 4.49
4729 5081 1.959226 AGTTTACAGGGCGTGCACG 60.959 57.895 34.01 34.01 43.27 5.34
4730 5082 0.882927 TCAGTTTACAGGGCGTGCAC 60.883 55.000 6.82 6.82 0.00 4.57
4731 5083 0.602638 CTCAGTTTACAGGGCGTGCA 60.603 55.000 7.17 0.00 0.00 4.57
4732 5084 0.320421 TCTCAGTTTACAGGGCGTGC 60.320 55.000 7.17 0.00 0.00 5.34
4733 5085 1.272490 TCTCTCAGTTTACAGGGCGTG 59.728 52.381 5.50 5.50 0.00 5.34
4734 5086 1.546476 CTCTCTCAGTTTACAGGGCGT 59.454 52.381 0.00 0.00 0.00 5.68
4735 5087 1.134965 CCTCTCTCAGTTTACAGGGCG 60.135 57.143 0.00 0.00 0.00 6.13
4736 5088 1.903183 ACCTCTCTCAGTTTACAGGGC 59.097 52.381 0.00 0.00 0.00 5.19
4737 5089 4.345854 ACTACCTCTCTCAGTTTACAGGG 58.654 47.826 0.00 0.00 0.00 4.45
4738 5090 7.463961 TTTACTACCTCTCTCAGTTTACAGG 57.536 40.000 0.00 0.00 0.00 4.00
4745 5097 8.569641 CGCTAATAATTTACTACCTCTCTCAGT 58.430 37.037 0.00 0.00 0.00 3.41
4746 5098 8.569641 ACGCTAATAATTTACTACCTCTCTCAG 58.430 37.037 0.00 0.00 0.00 3.35
4747 5099 8.350722 CACGCTAATAATTTACTACCTCTCTCA 58.649 37.037 0.00 0.00 0.00 3.27
4748 5100 7.326547 GCACGCTAATAATTTACTACCTCTCTC 59.673 40.741 0.00 0.00 0.00 3.20
4749 5101 7.146648 GCACGCTAATAATTTACTACCTCTCT 58.853 38.462 0.00 0.00 0.00 3.10
4750 5102 6.921857 TGCACGCTAATAATTTACTACCTCTC 59.078 38.462 0.00 0.00 0.00 3.20
4751 5103 6.812998 TGCACGCTAATAATTTACTACCTCT 58.187 36.000 0.00 0.00 0.00 3.69
4752 5104 7.653767 ATGCACGCTAATAATTTACTACCTC 57.346 36.000 0.00 0.00 0.00 3.85
4753 5105 8.446599 AAATGCACGCTAATAATTTACTACCT 57.553 30.769 0.00 0.00 0.00 3.08
4760 5112 9.748708 ATGACATTAAATGCACGCTAATAATTT 57.251 25.926 0.00 0.00 0.00 1.82
4762 5114 9.825972 GTATGACATTAAATGCACGCTAATAAT 57.174 29.630 0.00 0.00 0.00 1.28
4763 5115 8.286800 GGTATGACATTAAATGCACGCTAATAA 58.713 33.333 0.00 0.00 0.00 1.40
4764 5116 7.442666 TGGTATGACATTAAATGCACGCTAATA 59.557 33.333 0.00 0.00 0.00 0.98
4765 5117 6.262049 TGGTATGACATTAAATGCACGCTAAT 59.738 34.615 0.00 0.00 0.00 1.73
4766 5118 5.586643 TGGTATGACATTAAATGCACGCTAA 59.413 36.000 0.00 0.00 0.00 3.09
4767 5119 5.119694 TGGTATGACATTAAATGCACGCTA 58.880 37.500 0.00 0.00 0.00 4.26
4768 5120 3.944650 TGGTATGACATTAAATGCACGCT 59.055 39.130 0.00 0.00 0.00 5.07
4769 5121 4.285807 TGGTATGACATTAAATGCACGC 57.714 40.909 0.00 0.00 0.00 5.34
4770 5122 8.904712 CATATTTGGTATGACATTAAATGCACG 58.095 33.333 0.00 0.00 42.34 5.34
4771 5123 9.964303 TCATATTTGGTATGACATTAAATGCAC 57.036 29.630 0.00 0.00 43.25 4.57
4776 5128 8.132362 GCCGTTCATATTTGGTATGACATTAAA 58.868 33.333 0.00 0.00 46.73 1.52
4777 5129 7.283354 TGCCGTTCATATTTGGTATGACATTAA 59.717 33.333 0.00 0.00 46.73 1.40
4778 5130 6.768381 TGCCGTTCATATTTGGTATGACATTA 59.232 34.615 0.00 0.00 46.73 1.90
4779 5131 5.592282 TGCCGTTCATATTTGGTATGACATT 59.408 36.000 0.00 0.00 46.73 2.71
4780 5132 5.129634 TGCCGTTCATATTTGGTATGACAT 58.870 37.500 0.00 0.00 46.73 3.06
4781 5133 4.518249 TGCCGTTCATATTTGGTATGACA 58.482 39.130 0.00 0.00 46.73 3.58
4782 5134 4.554723 GCTGCCGTTCATATTTGGTATGAC 60.555 45.833 0.00 0.00 46.73 3.06
4783 5135 3.563808 GCTGCCGTTCATATTTGGTATGA 59.436 43.478 0.00 0.00 45.72 2.15
4784 5136 3.314913 TGCTGCCGTTCATATTTGGTATG 59.685 43.478 0.00 0.00 41.32 2.39
4785 5137 3.315191 GTGCTGCCGTTCATATTTGGTAT 59.685 43.478 0.00 0.00 0.00 2.73
4786 5138 2.680841 GTGCTGCCGTTCATATTTGGTA 59.319 45.455 0.00 0.00 0.00 3.25
4787 5139 1.472480 GTGCTGCCGTTCATATTTGGT 59.528 47.619 0.00 0.00 0.00 3.67
4788 5140 1.745087 AGTGCTGCCGTTCATATTTGG 59.255 47.619 0.00 0.00 0.00 3.28
4789 5141 4.591202 CTTAGTGCTGCCGTTCATATTTG 58.409 43.478 0.00 0.00 0.00 2.32
4790 5142 3.065371 GCTTAGTGCTGCCGTTCATATTT 59.935 43.478 0.00 0.00 38.95 1.40
4791 5143 2.614057 GCTTAGTGCTGCCGTTCATATT 59.386 45.455 0.00 0.00 38.95 1.28
4792 5144 2.213499 GCTTAGTGCTGCCGTTCATAT 58.787 47.619 0.00 0.00 38.95 1.78
4793 5145 1.066502 TGCTTAGTGCTGCCGTTCATA 60.067 47.619 0.00 0.00 43.37 2.15
4794 5146 0.321564 TGCTTAGTGCTGCCGTTCAT 60.322 50.000 0.00 0.00 43.37 2.57
4795 5147 0.321564 ATGCTTAGTGCTGCCGTTCA 60.322 50.000 0.00 0.00 43.37 3.18
4796 5148 0.097674 CATGCTTAGTGCTGCCGTTC 59.902 55.000 0.00 0.00 43.37 3.95
4797 5149 0.606401 ACATGCTTAGTGCTGCCGTT 60.606 50.000 0.00 0.00 43.37 4.44
4798 5150 0.249120 TACATGCTTAGTGCTGCCGT 59.751 50.000 0.00 0.00 43.37 5.68
4799 5151 1.368641 TTACATGCTTAGTGCTGCCG 58.631 50.000 0.00 0.00 43.37 5.69
4800 5152 3.378112 TGAATTACATGCTTAGTGCTGCC 59.622 43.478 0.00 0.00 43.37 4.85
4801 5153 4.346129 GTGAATTACATGCTTAGTGCTGC 58.654 43.478 0.00 0.00 43.37 5.25
4802 5154 4.637534 AGGTGAATTACATGCTTAGTGCTG 59.362 41.667 0.00 0.00 43.37 4.41
4803 5155 4.848357 AGGTGAATTACATGCTTAGTGCT 58.152 39.130 0.00 0.00 43.37 4.40
4804 5156 6.867662 ATAGGTGAATTACATGCTTAGTGC 57.132 37.500 0.00 0.00 43.25 4.40
4840 5192 9.219603 TCTATTAATTGCACACTCATATTAGGC 57.780 33.333 0.00 0.00 0.00 3.93
4880 5232 2.241259 AAATGTGTACGTGCAATCGC 57.759 45.000 8.25 0.00 39.24 4.58
4912 5267 9.866798 GCAAAGATTTCTCATTTTATCTCCTTT 57.133 29.630 0.00 0.00 0.00 3.11
4913 5268 8.473219 GGCAAAGATTTCTCATTTTATCTCCTT 58.527 33.333 0.00 0.00 0.00 3.36
4914 5269 7.616935 TGGCAAAGATTTCTCATTTTATCTCCT 59.383 33.333 0.00 0.00 0.00 3.69
4915 5270 7.775120 TGGCAAAGATTTCTCATTTTATCTCC 58.225 34.615 0.00 0.00 0.00 3.71
4916 5271 9.460906 GATGGCAAAGATTTCTCATTTTATCTC 57.539 33.333 0.00 0.00 0.00 2.75
4917 5272 8.419442 GGATGGCAAAGATTTCTCATTTTATCT 58.581 33.333 0.00 0.00 0.00 1.98
4918 5273 8.199449 TGGATGGCAAAGATTTCTCATTTTATC 58.801 33.333 0.00 0.00 0.00 1.75
4919 5274 8.081517 TGGATGGCAAAGATTTCTCATTTTAT 57.918 30.769 0.00 0.00 0.00 1.40
4920 5275 7.479352 TGGATGGCAAAGATTTCTCATTTTA 57.521 32.000 0.00 0.00 0.00 1.52
4921 5276 6.363167 TGGATGGCAAAGATTTCTCATTTT 57.637 33.333 0.00 0.00 0.00 1.82
4922 5277 6.363167 TTGGATGGCAAAGATTTCTCATTT 57.637 33.333 0.00 0.00 0.00 2.32
4923 5278 6.555463 ATTGGATGGCAAAGATTTCTCATT 57.445 33.333 0.00 0.00 0.00 2.57
4924 5279 6.555463 AATTGGATGGCAAAGATTTCTCAT 57.445 33.333 0.00 0.00 0.00 2.90
4925 5280 6.167685 CAAATTGGATGGCAAAGATTTCTCA 58.832 36.000 0.00 0.00 0.00 3.27
4926 5281 5.583457 CCAAATTGGATGGCAAAGATTTCTC 59.417 40.000 6.04 0.00 40.96 2.87
4927 5282 5.013391 ACCAAATTGGATGGCAAAGATTTCT 59.987 36.000 20.25 0.00 40.96 2.52
4928 5283 5.247862 ACCAAATTGGATGGCAAAGATTTC 58.752 37.500 20.25 0.00 40.96 2.17
4929 5284 5.245584 ACCAAATTGGATGGCAAAGATTT 57.754 34.783 20.25 0.00 40.96 2.17
4930 5285 4.914177 ACCAAATTGGATGGCAAAGATT 57.086 36.364 20.25 0.00 40.96 2.40
4931 5286 4.914177 AACCAAATTGGATGGCAAAGAT 57.086 36.364 20.25 0.00 40.96 2.40
4932 5287 5.083122 TCTAACCAAATTGGATGGCAAAGA 58.917 37.500 20.25 3.34 40.96 2.52
4933 5288 5.404466 TCTAACCAAATTGGATGGCAAAG 57.596 39.130 20.25 0.76 40.96 2.77
4934 5289 5.815233 TTCTAACCAAATTGGATGGCAAA 57.185 34.783 20.25 0.00 40.96 3.68
4935 5290 7.673641 ATATTCTAACCAAATTGGATGGCAA 57.326 32.000 20.25 6.08 40.96 4.52
4936 5291 7.125507 ACAATATTCTAACCAAATTGGATGGCA 59.874 33.333 20.25 0.00 40.96 4.92
4937 5292 7.439056 CACAATATTCTAACCAAATTGGATGGC 59.561 37.037 20.25 0.00 40.96 4.40
4938 5293 8.876275 CACAATATTCTAACCAAATTGGATGG 57.124 34.615 20.25 9.30 40.96 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.