Multiple sequence alignment - TraesCS6D01G228300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G228300 chr6D 100.000 4384 0 0 1 4384 319347533 319351916 0.000000e+00 8096.0
1 TraesCS6D01G228300 chr6D 81.517 211 28 7 648 851 434464284 434464490 3.510000e-36 163.0
2 TraesCS6D01G228300 chr6A 96.201 1632 43 4 2085 3711 457313521 457315138 0.000000e+00 2652.0
3 TraesCS6D01G228300 chr6A 90.593 1584 74 30 520 2088 457309457 457310980 0.000000e+00 2030.0
4 TraesCS6D01G228300 chr6A 95.382 693 23 6 3698 4384 457318029 457318718 0.000000e+00 1094.0
5 TraesCS6D01G228300 chr6B 93.695 1602 78 13 124 1710 503900740 503899147 0.000000e+00 2377.0
6 TraesCS6D01G228300 chr6B 92.031 778 40 15 2699 3465 503898072 503897306 0.000000e+00 1074.0
7 TraesCS6D01G228300 chr6B 93.162 117 7 1 12 128 503928223 503928108 2.100000e-38 171.0
8 TraesCS6D01G228300 chr6B 79.048 210 36 6 1740 1946 142707376 142707172 2.130000e-28 137.0
9 TraesCS6D01G228300 chr6B 89.815 108 8 2 2515 2621 503898479 503898374 7.650000e-28 135.0
10 TraesCS6D01G228300 chr6B 79.188 197 24 10 648 840 23449479 23449296 2.140000e-23 121.0
11 TraesCS6D01G228300 chr7D 82.521 349 54 6 1772 2116 267043255 267042910 2.560000e-77 300.0
12 TraesCS6D01G228300 chr4A 80.296 203 30 7 655 851 642955439 642955637 1.270000e-30 145.0
13 TraesCS6D01G228300 chr5B 79.048 210 36 6 1740 1946 703111540 703111336 2.130000e-28 137.0
14 TraesCS6D01G228300 chr1A 79.048 210 36 6 1740 1946 449513298 449513094 2.130000e-28 137.0
15 TraesCS6D01G228300 chr2D 78.341 217 30 7 648 851 181304103 181304315 1.660000e-24 124.0
16 TraesCS6D01G228300 chr2D 76.170 235 42 12 643 866 201092062 201091831 1.290000e-20 111.0
17 TraesCS6D01G228300 chr2D 83.486 109 17 1 4153 4261 143265503 143265610 2.790000e-17 100.0
18 TraesCS6D01G228300 chr7B 77.143 210 40 5 645 851 700788240 700788444 9.960000e-22 115.0
19 TraesCS6D01G228300 chr2B 84.404 109 16 1 4153 4261 201268728 201268835 6.000000e-19 106.0
20 TraesCS6D01G228300 chr1D 84.466 103 15 1 643 745 233893238 233893339 2.790000e-17 100.0
21 TraesCS6D01G228300 chr3B 84.043 94 15 0 648 741 657592327 657592420 1.680000e-14 91.6
22 TraesCS6D01G228300 chr3B 80.392 102 14 5 704 800 657592406 657592506 6.080000e-09 73.1
23 TraesCS6D01G228300 chr3A 78.626 131 16 9 747 866 145649807 145649936 4.700000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G228300 chr6D 319347533 319351916 4383 False 8096.000000 8096 100.000000 1 4384 1 chr6D.!!$F1 4383
1 TraesCS6D01G228300 chr6A 457309457 457318718 9261 False 1925.333333 2652 94.058667 520 4384 3 chr6A.!!$F1 3864
2 TraesCS6D01G228300 chr6B 503897306 503900740 3434 True 1195.333333 2377 91.847000 124 3465 3 chr6B.!!$R4 3341

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
599 603 0.033642 TGCGTGTGTCATTTCGGGTA 59.966 50.0 0.0 0.0 0.00 3.69 F
1304 1318 0.916358 CCACCACCTCCTCCTCCAAT 60.916 60.0 0.0 0.0 0.00 3.16 F
1690 1712 1.280457 AACTTGGGTTGTGGGCAAAA 58.720 45.0 0.0 0.0 36.22 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1690 1712 0.322456 TGCGGTCTTGCAGCCTAAAT 60.322 50.000 0.00 0.0 40.62 1.40 R
2134 4733 3.069016 TCAGTGCTTATATACACCCCACG 59.931 47.826 2.83 0.0 37.51 4.94 R
3592 6545 0.111253 CCAATGAGTATCCAGGCCCC 59.889 60.000 0.00 0.0 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.359011 TCCAGTAGGAGCAGGCGA 59.641 61.111 0.00 0.00 39.61 5.54
20 21 1.075970 TCCAGTAGGAGCAGGCGAT 60.076 57.895 0.00 0.00 39.61 4.58
21 22 1.068753 CCAGTAGGAGCAGGCGATG 59.931 63.158 0.00 0.00 36.89 3.84
30 31 3.574445 CAGGCGATGCAGCAGAGC 61.574 66.667 14.60 14.60 39.27 4.09
31 32 3.783580 AGGCGATGCAGCAGAGCT 61.784 61.111 20.18 0.00 40.77 4.09
32 33 2.107750 GGCGATGCAGCAGAGCTA 59.892 61.111 20.18 0.00 36.40 3.32
33 34 1.955157 GGCGATGCAGCAGAGCTAG 60.955 63.158 20.18 0.00 36.40 3.42
34 35 1.955157 GCGATGCAGCAGAGCTAGG 60.955 63.158 15.42 0.00 36.40 3.02
35 36 1.738432 CGATGCAGCAGAGCTAGGA 59.262 57.895 1.53 0.00 36.40 2.94
36 37 0.317799 CGATGCAGCAGAGCTAGGAT 59.682 55.000 1.53 0.00 36.40 3.24
37 38 1.270199 CGATGCAGCAGAGCTAGGATT 60.270 52.381 1.53 0.00 36.40 3.01
38 39 2.144730 GATGCAGCAGAGCTAGGATTG 58.855 52.381 0.00 0.00 36.40 2.67
39 40 0.463295 TGCAGCAGAGCTAGGATTGC 60.463 55.000 0.00 0.00 36.40 3.56
40 41 0.463295 GCAGCAGAGCTAGGATTGCA 60.463 55.000 8.64 0.00 36.40 4.08
41 42 1.814634 GCAGCAGAGCTAGGATTGCAT 60.815 52.381 8.64 0.00 36.40 3.96
42 43 2.549563 GCAGCAGAGCTAGGATTGCATA 60.550 50.000 8.64 0.00 36.40 3.14
43 44 3.736720 CAGCAGAGCTAGGATTGCATAA 58.263 45.455 8.64 0.00 36.40 1.90
44 45 3.497640 CAGCAGAGCTAGGATTGCATAAC 59.502 47.826 8.64 0.00 36.40 1.89
45 46 3.135348 AGCAGAGCTAGGATTGCATAACA 59.865 43.478 8.64 0.00 36.99 2.41
46 47 3.497640 GCAGAGCTAGGATTGCATAACAG 59.502 47.826 0.00 0.00 36.59 3.16
47 48 4.701765 CAGAGCTAGGATTGCATAACAGT 58.298 43.478 0.00 0.00 0.00 3.55
48 49 4.749099 CAGAGCTAGGATTGCATAACAGTC 59.251 45.833 0.00 0.00 34.37 3.51
53 54 3.405170 GGATTGCATAACAGTCCGTTG 57.595 47.619 0.00 0.00 44.34 4.10
54 55 2.747446 GGATTGCATAACAGTCCGTTGT 59.253 45.455 0.00 0.00 44.34 3.32
55 56 3.936453 GGATTGCATAACAGTCCGTTGTA 59.064 43.478 0.00 0.00 44.34 2.41
56 57 4.574828 GGATTGCATAACAGTCCGTTGTAT 59.425 41.667 0.00 0.00 44.34 2.29
57 58 4.937696 TTGCATAACAGTCCGTTGTATG 57.062 40.909 0.00 0.00 38.63 2.39
58 59 4.195225 TGCATAACAGTCCGTTGTATGA 57.805 40.909 0.00 0.00 38.63 2.15
59 60 4.570930 TGCATAACAGTCCGTTGTATGAA 58.429 39.130 0.00 0.00 38.63 2.57
60 61 5.182487 TGCATAACAGTCCGTTGTATGAAT 58.818 37.500 0.00 0.00 38.63 2.57
61 62 5.645929 TGCATAACAGTCCGTTGTATGAATT 59.354 36.000 0.00 0.00 38.63 2.17
62 63 6.150307 TGCATAACAGTCCGTTGTATGAATTT 59.850 34.615 0.00 0.00 38.63 1.82
63 64 7.334671 TGCATAACAGTCCGTTGTATGAATTTA 59.665 33.333 0.00 0.00 38.63 1.40
64 65 8.342634 GCATAACAGTCCGTTGTATGAATTTAT 58.657 33.333 0.00 0.00 38.63 1.40
67 68 7.781548 ACAGTCCGTTGTATGAATTTATACC 57.218 36.000 15.55 3.16 33.56 2.73
68 69 7.562135 ACAGTCCGTTGTATGAATTTATACCT 58.438 34.615 15.55 4.07 33.56 3.08
69 70 8.698210 ACAGTCCGTTGTATGAATTTATACCTA 58.302 33.333 15.55 3.80 33.56 3.08
70 71 9.193133 CAGTCCGTTGTATGAATTTATACCTAG 57.807 37.037 15.55 7.97 33.56 3.02
71 72 8.365647 AGTCCGTTGTATGAATTTATACCTAGG 58.634 37.037 15.55 7.41 33.56 3.02
72 73 8.362639 GTCCGTTGTATGAATTTATACCTAGGA 58.637 37.037 17.98 16.12 33.56 2.94
73 74 9.096823 TCCGTTGTATGAATTTATACCTAGGAT 57.903 33.333 17.98 7.35 33.56 3.24
74 75 9.720769 CCGTTGTATGAATTTATACCTAGGATT 57.279 33.333 17.98 3.78 33.56 3.01
91 92 8.934697 ACCTAGGATTATGCACTAACATAAAGA 58.065 33.333 17.98 0.00 43.68 2.52
92 93 9.950496 CCTAGGATTATGCACTAACATAAAGAT 57.050 33.333 1.05 0.00 43.68 2.40
95 96 8.571336 AGGATTATGCACTAACATAAAGATTGC 58.429 33.333 0.00 0.00 43.68 3.56
96 97 8.352201 GGATTATGCACTAACATAAAGATTGCA 58.648 33.333 0.00 0.00 43.68 4.08
98 99 9.903682 ATTATGCACTAACATAAAGATTGCATC 57.096 29.630 9.28 0.00 43.89 3.91
99 100 6.756299 TGCACTAACATAAAGATTGCATCA 57.244 33.333 0.00 0.00 33.72 3.07
100 101 7.337480 TGCACTAACATAAAGATTGCATCAT 57.663 32.000 0.00 0.00 33.72 2.45
101 102 8.449251 TGCACTAACATAAAGATTGCATCATA 57.551 30.769 0.00 0.00 33.72 2.15
102 103 8.344831 TGCACTAACATAAAGATTGCATCATAC 58.655 33.333 0.00 0.00 33.72 2.39
103 104 7.805071 GCACTAACATAAAGATTGCATCATACC 59.195 37.037 0.00 0.00 0.00 2.73
104 105 8.011673 CACTAACATAAAGATTGCATCATACCG 58.988 37.037 0.00 0.00 0.00 4.02
105 106 5.362556 ACATAAAGATTGCATCATACCGC 57.637 39.130 0.00 0.00 0.00 5.68
106 107 4.821260 ACATAAAGATTGCATCATACCGCA 59.179 37.500 0.00 0.00 36.05 5.69
107 108 5.474532 ACATAAAGATTGCATCATACCGCAT 59.525 36.000 0.00 0.00 38.10 4.73
108 109 6.654582 ACATAAAGATTGCATCATACCGCATA 59.345 34.615 0.00 0.00 38.10 3.14
109 110 7.174772 ACATAAAGATTGCATCATACCGCATAA 59.825 33.333 0.00 0.00 38.10 1.90
110 111 6.389830 AAAGATTGCATCATACCGCATAAA 57.610 33.333 0.00 0.00 38.10 1.40
111 112 6.579666 AAGATTGCATCATACCGCATAAAT 57.420 33.333 0.00 0.00 38.10 1.40
112 113 6.579666 AGATTGCATCATACCGCATAAATT 57.420 33.333 0.00 0.00 38.10 1.82
113 114 6.985117 AGATTGCATCATACCGCATAAATTT 58.015 32.000 0.00 0.00 38.10 1.82
114 115 7.436118 AGATTGCATCATACCGCATAAATTTT 58.564 30.769 0.00 0.00 38.10 1.82
115 116 6.825284 TTGCATCATACCGCATAAATTTTG 57.175 33.333 0.00 0.00 38.10 2.44
116 117 5.288015 TGCATCATACCGCATAAATTTTGG 58.712 37.500 0.00 0.00 31.95 3.28
117 118 4.685628 GCATCATACCGCATAAATTTTGGG 59.314 41.667 0.00 3.54 0.00 4.12
118 119 4.314740 TCATACCGCATAAATTTTGGGC 57.685 40.909 0.00 0.00 0.00 5.36
119 120 3.068873 TCATACCGCATAAATTTTGGGCC 59.931 43.478 0.00 0.00 0.00 5.80
120 121 0.539518 ACCGCATAAATTTTGGGCCC 59.460 50.000 17.59 17.59 0.00 5.80
121 122 0.829990 CCGCATAAATTTTGGGCCCT 59.170 50.000 25.70 3.19 0.00 5.19
122 123 1.473080 CCGCATAAATTTTGGGCCCTG 60.473 52.381 25.70 11.48 0.00 4.45
134 135 3.892581 GCCCTGCTATGCGTTGGC 61.893 66.667 0.00 0.00 40.52 4.52
146 147 1.908066 GCGTTGGCCGACGATCTTTT 61.908 55.000 42.80 0.00 45.47 2.27
159 160 2.414161 CGATCTTTTCAAAAGACCCGCC 60.414 50.000 14.95 2.20 0.00 6.13
160 161 2.060050 TCTTTTCAAAAGACCCGCCA 57.940 45.000 8.60 0.00 0.00 5.69
164 165 1.770294 TTCAAAAGACCCGCCACTTT 58.230 45.000 0.00 0.00 37.85 2.66
204 206 3.219281 CATCATCAATGATCCAGCCACA 58.781 45.455 2.47 0.00 45.23 4.17
214 216 3.181451 TGATCCAGCCACATCCTTATCAC 60.181 47.826 0.00 0.00 0.00 3.06
221 223 3.346315 CCACATCCTTATCACTGCAACA 58.654 45.455 0.00 0.00 0.00 3.33
228 230 3.745975 CCTTATCACTGCAACAAAGACGA 59.254 43.478 0.00 0.00 0.00 4.20
232 234 2.942376 TCACTGCAACAAAGACGATGTT 59.058 40.909 0.00 0.00 41.50 2.71
238 240 2.157834 ACAAAGACGATGTTGCGGTA 57.842 45.000 0.00 0.00 35.12 4.02
263 265 3.011513 GCAAAGAGCTCATGTTGCG 57.988 52.632 24.74 6.73 41.15 4.85
292 294 4.727507 TTTGCAATAGTGGTTGTGTTGT 57.272 36.364 0.00 0.00 0.00 3.32
316 318 9.371136 TGTATATTGTTTTTCACTTTTTGCACA 57.629 25.926 0.00 0.00 0.00 4.57
331 333 6.947644 TTTTGCACATATAGATGATGCTGT 57.052 33.333 18.82 0.00 39.16 4.40
361 363 2.361119 ACATGGATGATGTTGCAGATGC 59.639 45.455 0.00 0.00 43.20 3.91
414 417 0.256464 TGACCCCACGAAAAACACCT 59.744 50.000 0.00 0.00 0.00 4.00
437 440 7.108241 CTGAGTACGAAGGAGGTAGTCAACC 62.108 52.000 9.85 0.00 45.00 3.77
452 455 2.926200 GTCAACCAGTCACATGAGATCG 59.074 50.000 0.00 0.00 0.00 3.69
459 462 1.001406 GTCACATGAGATCGGGATCCC 59.999 57.143 22.12 22.12 38.58 3.85
487 490 1.496429 CTATTGGTGGGGGAGATTGCT 59.504 52.381 0.00 0.00 0.00 3.91
489 492 0.623723 TTGGTGGGGGAGATTGCTAC 59.376 55.000 0.00 0.00 0.00 3.58
503 506 0.758734 TGCTACAGTGGCTCAGTTGT 59.241 50.000 10.64 0.00 0.00 3.32
531 534 8.798859 ACCTATAATATGAAAATAGGCTGCTG 57.201 34.615 0.00 0.00 44.09 4.41
572 575 0.179056 ATATCCGACGGCCACAAAGG 60.179 55.000 9.66 0.00 41.84 3.11
586 589 0.957395 CAAAGGAGGCTGATGCGTGT 60.957 55.000 0.00 0.00 40.82 4.49
597 600 0.096976 GATGCGTGTGTCATTTCGGG 59.903 55.000 0.00 0.00 0.00 5.14
599 603 0.033642 TGCGTGTGTCATTTCGGGTA 59.966 50.000 0.00 0.00 0.00 3.69
742 746 2.735134 GCGAGGATGACAACGTTAGTTT 59.265 45.455 0.00 0.00 38.79 2.66
757 761 9.155053 CAACGTTAGTTTTTCATGACTACTTTC 57.845 33.333 0.00 0.00 38.79 2.62
877 888 7.287696 TGTGGCACTTATCATCTATCTTGTCTA 59.712 37.037 19.83 0.00 0.00 2.59
945 958 2.831742 CTGCCCGCGGGTCTAGTA 60.832 66.667 42.53 21.53 37.65 1.82
946 959 2.831742 TGCCCGCGGGTCTAGTAG 60.832 66.667 42.53 17.60 37.65 2.57
965 978 1.338337 AGCTTGGATCGATACCAGACG 59.662 52.381 12.82 8.51 38.70 4.18
1030 1043 3.126171 CCGGCAGTCGAAAATAACATTCA 59.874 43.478 0.00 0.00 42.43 2.57
1148 1162 2.441001 CTCTTGCCCCTTCTGATATGGT 59.559 50.000 0.00 0.00 0.00 3.55
1257 1271 3.333219 CCAGCTCCAGCCCCTTCA 61.333 66.667 0.00 0.00 43.38 3.02
1304 1318 0.916358 CCACCACCTCCTCCTCCAAT 60.916 60.000 0.00 0.00 0.00 3.16
1512 1526 3.637273 GAGGCGGGGTTCCACACT 61.637 66.667 0.00 0.00 0.00 3.55
1690 1712 1.280457 AACTTGGGTTGTGGGCAAAA 58.720 45.000 0.00 0.00 36.22 2.44
1813 1840 5.437060 TCTGAGCTGTTTACCTCTGTTTTT 58.563 37.500 0.00 0.00 0.00 1.94
1903 1934 4.953667 TCTCTCTCAACATATGCCATGTC 58.046 43.478 1.58 0.00 0.00 3.06
1984 2015 2.472029 AGGTTCTTCGGTCATGGATCT 58.528 47.619 0.00 0.00 0.00 2.75
2010 2041 4.741321 ATGAACCCTTTTGCATACCATG 57.259 40.909 0.00 0.00 0.00 3.66
2134 4733 6.903883 TGAACCGATGAGTATTCTTTTAGC 57.096 37.500 0.00 0.00 0.00 3.09
2173 4772 2.225908 ACTGAAAGGAGGGGATGTACCT 60.226 50.000 0.00 0.00 39.30 3.08
2364 5064 2.159599 GCTGTTACTTGCTGTCTCATGC 60.160 50.000 0.00 0.00 0.00 4.06
2422 5122 3.133003 AGGGACACTGATCTTATCCAACG 59.867 47.826 0.00 0.00 0.00 4.10
2493 5193 7.556275 ACACTGATCTTTCTTTTGTTGGTTCTA 59.444 33.333 0.00 0.00 0.00 2.10
2915 5860 3.997021 CCGCCAGAGGTATATCATGTTTC 59.003 47.826 0.00 0.00 0.00 2.78
2920 5865 6.939163 GCCAGAGGTATATCATGTTTCATTCT 59.061 38.462 0.00 0.00 0.00 2.40
2973 5925 3.946558 ACATGCATTGCCTTTTTGTGTTT 59.053 34.783 6.12 0.00 0.00 2.83
2974 5926 4.035441 ACATGCATTGCCTTTTTGTGTTTC 59.965 37.500 6.12 0.00 0.00 2.78
2975 5927 3.603532 TGCATTGCCTTTTTGTGTTTCA 58.396 36.364 6.12 0.00 0.00 2.69
3112 6064 1.404391 CACAGAGCCAATTCCATCTGC 59.596 52.381 9.25 0.00 42.33 4.26
3134 6086 4.764308 GCAGAAAGAAATCAAGTTCCTCCT 59.236 41.667 0.00 0.00 0.00 3.69
3444 6396 6.323482 TGAGATGTTCCCTTCAAATTGAAACA 59.677 34.615 9.85 10.94 35.73 2.83
3478 6431 8.710835 TGTAATGTACTCTTAAATTGATGCGA 57.289 30.769 0.00 0.00 0.00 5.10
3486 6439 7.910304 ACTCTTAAATTGATGCGAGTTATGAC 58.090 34.615 0.00 0.00 0.00 3.06
3489 6442 8.946085 TCTTAAATTGATGCGAGTTATGACTTT 58.054 29.630 0.00 0.00 35.88 2.66
3504 6457 9.965824 AGTTATGACTTTGTTTTAACATCCTTG 57.034 29.630 0.00 0.00 38.95 3.61
3527 6480 5.013704 TGTCCTTAAATTCACTAAGCTCCCA 59.986 40.000 0.00 0.00 0.00 4.37
3532 6485 0.991920 TTCACTAAGCTCCCAAGGGG 59.008 55.000 5.08 0.00 46.11 4.79
3558 6511 1.674221 GCGCTCTCAGTCAATTGAGGT 60.674 52.381 8.80 0.00 43.78 3.85
3571 6524 2.341846 TTGAGGTATCAATTCGGGCC 57.658 50.000 0.00 0.00 40.54 5.80
3592 6545 5.179929 GGCCTTTGATTTTGAATTTGACTGG 59.820 40.000 0.00 0.00 0.00 4.00
3627 6580 2.319136 TTGGGGTCGATGGTTATTCG 57.681 50.000 0.00 0.00 37.94 3.34
3628 6581 0.466543 TGGGGTCGATGGTTATTCGG 59.533 55.000 0.00 0.00 37.22 4.30
3629 6582 0.466963 GGGGTCGATGGTTATTCGGT 59.533 55.000 0.00 0.00 37.22 4.69
3630 6583 1.578583 GGGTCGATGGTTATTCGGTG 58.421 55.000 0.00 0.00 37.22 4.94
3631 6584 0.935196 GGTCGATGGTTATTCGGTGC 59.065 55.000 0.00 0.00 37.22 5.01
3632 6585 0.935196 GTCGATGGTTATTCGGTGCC 59.065 55.000 0.00 0.00 37.22 5.01
3633 6586 0.828022 TCGATGGTTATTCGGTGCCT 59.172 50.000 0.00 0.00 37.22 4.75
3634 6587 0.937304 CGATGGTTATTCGGTGCCTG 59.063 55.000 0.00 0.00 33.05 4.85
3635 6588 0.663153 GATGGTTATTCGGTGCCTGC 59.337 55.000 0.00 0.00 0.00 4.85
3636 6589 0.751643 ATGGTTATTCGGTGCCTGCC 60.752 55.000 0.00 0.00 0.00 4.85
3728 9585 7.569599 AATATTTACCCGGAGAACCAGATAT 57.430 36.000 0.73 0.00 35.59 1.63
3776 9635 0.188342 AAAAGCCAGGGGTCATGTGT 59.812 50.000 0.00 0.00 0.00 3.72
3784 9643 1.014352 GGGGTCATGTGTGTTATCGC 58.986 55.000 0.00 0.00 0.00 4.58
3848 9707 2.658593 CCGACGATCATGGACCGC 60.659 66.667 0.00 0.00 0.00 5.68
3866 9725 1.812571 CGCATAGGTCAAACAAGCCTT 59.187 47.619 0.00 0.00 34.07 4.35
3880 9739 2.179018 CCTTGTTGGAATGCGCGG 59.821 61.111 8.83 0.00 38.35 6.46
3890 9749 1.260561 GGAATGCGCGGTTACATGTAG 59.739 52.381 8.83 0.00 0.00 2.74
3941 9800 4.222588 TGTTGGGGCCAGATTCAAAATAAG 59.777 41.667 4.39 0.00 0.00 1.73
3949 9808 6.591448 GGCCAGATTCAAAATAAGTTTTCCAG 59.409 38.462 0.00 0.00 35.41 3.86
3951 9810 7.670364 CCAGATTCAAAATAAGTTTTCCAGGT 58.330 34.615 0.00 0.00 35.41 4.00
4079 9940 6.959639 TGTTTCTTAAGCTTTGAGTGGATT 57.040 33.333 3.20 0.00 0.00 3.01
4135 9998 3.037431 TGCAATTTTGGCACATGGTAC 57.963 42.857 0.00 0.00 39.30 3.34
4195 10058 1.409064 TGTCGCTGAGGTGGATGTATC 59.591 52.381 0.00 0.00 0.00 2.24
4243 10106 6.732154 ACATCCATTTGAGCGAGAATTAATG 58.268 36.000 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.185175 TCGCCTGCTCCTACTGGATA 59.815 55.000 0.00 0.00 42.29 2.59
2 3 1.075970 ATCGCCTGCTCCTACTGGA 60.076 57.895 0.00 0.00 40.69 3.86
3 4 1.068753 CATCGCCTGCTCCTACTGG 59.931 63.158 0.00 0.00 0.00 4.00
4 5 4.746361 CATCGCCTGCTCCTACTG 57.254 61.111 0.00 0.00 0.00 2.74
13 14 2.639883 TAGCTCTGCTGCATCGCCTG 62.640 60.000 16.43 0.00 40.10 4.85
14 15 2.366480 CTAGCTCTGCTGCATCGCCT 62.366 60.000 16.43 8.10 40.10 5.52
15 16 1.955157 CTAGCTCTGCTGCATCGCC 60.955 63.158 16.43 1.69 40.10 5.54
16 17 1.955157 CCTAGCTCTGCTGCATCGC 60.955 63.158 1.31 9.01 40.10 4.58
17 18 0.317799 ATCCTAGCTCTGCTGCATCG 59.682 55.000 1.31 0.00 40.10 3.84
18 19 2.144730 CAATCCTAGCTCTGCTGCATC 58.855 52.381 1.31 0.00 40.10 3.91
19 20 1.814634 GCAATCCTAGCTCTGCTGCAT 60.815 52.381 1.31 0.00 40.10 3.96
20 21 0.463295 GCAATCCTAGCTCTGCTGCA 60.463 55.000 0.88 0.88 40.10 4.41
21 22 0.463295 TGCAATCCTAGCTCTGCTGC 60.463 55.000 1.96 0.00 40.10 5.25
22 23 2.257691 ATGCAATCCTAGCTCTGCTG 57.742 50.000 1.96 0.00 40.10 4.41
23 24 3.135348 TGTTATGCAATCCTAGCTCTGCT 59.865 43.478 0.00 0.00 43.41 4.24
24 25 3.470709 TGTTATGCAATCCTAGCTCTGC 58.529 45.455 0.00 0.00 35.32 4.26
25 26 4.701765 ACTGTTATGCAATCCTAGCTCTG 58.298 43.478 0.00 0.00 0.00 3.35
26 27 4.202305 GGACTGTTATGCAATCCTAGCTCT 60.202 45.833 0.00 0.00 40.17 4.09
27 28 4.061596 GGACTGTTATGCAATCCTAGCTC 58.938 47.826 0.00 0.00 40.17 4.09
28 29 3.493350 CGGACTGTTATGCAATCCTAGCT 60.493 47.826 0.00 0.00 41.09 3.32
29 30 2.802816 CGGACTGTTATGCAATCCTAGC 59.197 50.000 0.00 0.00 41.09 3.42
30 31 4.060038 ACGGACTGTTATGCAATCCTAG 57.940 45.455 0.00 0.00 41.09 3.02
31 32 4.188462 CAACGGACTGTTATGCAATCCTA 58.812 43.478 0.00 0.00 41.09 2.94
32 33 3.009723 CAACGGACTGTTATGCAATCCT 58.990 45.455 0.00 0.00 41.09 3.24
33 34 2.747446 ACAACGGACTGTTATGCAATCC 59.253 45.455 0.00 0.00 39.94 3.01
34 35 5.293324 TCATACAACGGACTGTTATGCAATC 59.707 40.000 0.00 0.00 39.29 2.67
35 36 5.182487 TCATACAACGGACTGTTATGCAAT 58.818 37.500 0.00 0.00 39.29 3.56
36 37 4.570930 TCATACAACGGACTGTTATGCAA 58.429 39.130 0.00 0.00 39.29 4.08
37 38 4.195225 TCATACAACGGACTGTTATGCA 57.805 40.909 0.00 0.00 39.29 3.96
38 39 5.734855 ATTCATACAACGGACTGTTATGC 57.265 39.130 0.00 0.00 39.29 3.14
41 42 9.316730 GGTATAAATTCATACAACGGACTGTTA 57.683 33.333 0.00 0.00 39.29 2.41
42 43 8.044908 AGGTATAAATTCATACAACGGACTGTT 58.955 33.333 1.18 0.00 43.09 3.16
43 44 7.562135 AGGTATAAATTCATACAACGGACTGT 58.438 34.615 1.18 0.00 33.77 3.55
44 45 9.193133 CTAGGTATAAATTCATACAACGGACTG 57.807 37.037 1.18 0.00 33.77 3.51
45 46 8.365647 CCTAGGTATAAATTCATACAACGGACT 58.634 37.037 0.00 0.00 33.77 3.85
46 47 8.362639 TCCTAGGTATAAATTCATACAACGGAC 58.637 37.037 9.08 0.00 33.77 4.79
47 48 8.481492 TCCTAGGTATAAATTCATACAACGGA 57.519 34.615 9.08 0.76 33.77 4.69
48 49 9.720769 AATCCTAGGTATAAATTCATACAACGG 57.279 33.333 9.08 0.00 33.77 4.44
65 66 8.934697 TCTTTATGTTAGTGCATAATCCTAGGT 58.065 33.333 9.08 0.00 39.95 3.08
66 67 9.950496 ATCTTTATGTTAGTGCATAATCCTAGG 57.050 33.333 0.82 0.82 39.95 3.02
69 70 8.571336 GCAATCTTTATGTTAGTGCATAATCCT 58.429 33.333 0.00 0.00 39.95 3.24
70 71 8.352201 TGCAATCTTTATGTTAGTGCATAATCC 58.648 33.333 0.00 0.00 39.95 3.01
71 72 9.903682 ATGCAATCTTTATGTTAGTGCATAATC 57.096 29.630 7.60 0.00 46.37 1.75
76 77 6.756299 TGATGCAATCTTTATGTTAGTGCA 57.244 33.333 0.00 0.00 45.81 4.57
77 78 7.805071 GGTATGATGCAATCTTTATGTTAGTGC 59.195 37.037 0.00 0.00 45.81 4.40
78 79 8.011673 CGGTATGATGCAATCTTTATGTTAGTG 58.988 37.037 0.00 0.00 45.81 2.74
79 80 7.307989 GCGGTATGATGCAATCTTTATGTTAGT 60.308 37.037 0.00 0.00 45.81 2.24
80 81 7.017645 GCGGTATGATGCAATCTTTATGTTAG 58.982 38.462 0.00 0.00 45.81 2.34
81 82 6.484977 TGCGGTATGATGCAATCTTTATGTTA 59.515 34.615 0.00 0.00 45.81 2.41
82 83 5.299028 TGCGGTATGATGCAATCTTTATGTT 59.701 36.000 0.00 0.00 45.81 2.71
83 84 4.821260 TGCGGTATGATGCAATCTTTATGT 59.179 37.500 0.00 0.00 45.81 2.29
84 85 5.361135 TGCGGTATGATGCAATCTTTATG 57.639 39.130 0.00 0.00 45.81 1.90
85 86 7.686438 TTATGCGGTATGATGCAATCTTTAT 57.314 32.000 0.00 0.00 45.81 1.40
86 87 7.503521 TTTATGCGGTATGATGCAATCTTTA 57.496 32.000 0.00 0.00 45.81 1.85
87 88 6.389830 TTTATGCGGTATGATGCAATCTTT 57.610 33.333 0.00 0.00 45.81 2.52
88 89 6.579666 ATTTATGCGGTATGATGCAATCTT 57.420 33.333 0.00 0.00 45.81 2.40
89 90 6.579666 AATTTATGCGGTATGATGCAATCT 57.420 33.333 0.00 0.00 45.81 2.40
90 91 7.359431 CCAAAATTTATGCGGTATGATGCAATC 60.359 37.037 0.00 0.00 45.45 2.67
91 92 6.424509 CCAAAATTTATGCGGTATGATGCAAT 59.575 34.615 0.00 0.00 45.45 3.56
92 93 5.752472 CCAAAATTTATGCGGTATGATGCAA 59.248 36.000 0.00 0.00 45.45 4.08
93 94 5.288015 CCAAAATTTATGCGGTATGATGCA 58.712 37.500 0.00 0.00 46.51 3.96
94 95 4.685628 CCCAAAATTTATGCGGTATGATGC 59.314 41.667 0.00 0.00 0.00 3.91
95 96 4.685628 GCCCAAAATTTATGCGGTATGATG 59.314 41.667 0.00 0.00 0.00 3.07
96 97 4.262420 GGCCCAAAATTTATGCGGTATGAT 60.262 41.667 0.00 0.00 0.00 2.45
97 98 3.068873 GGCCCAAAATTTATGCGGTATGA 59.931 43.478 0.00 0.00 0.00 2.15
98 99 3.389221 GGCCCAAAATTTATGCGGTATG 58.611 45.455 0.00 0.00 0.00 2.39
99 100 2.367241 GGGCCCAAAATTTATGCGGTAT 59.633 45.455 19.95 0.00 0.00 2.73
100 101 1.757699 GGGCCCAAAATTTATGCGGTA 59.242 47.619 19.95 0.00 0.00 4.02
101 102 0.539518 GGGCCCAAAATTTATGCGGT 59.460 50.000 19.95 0.00 0.00 5.68
102 103 0.829990 AGGGCCCAAAATTTATGCGG 59.170 50.000 27.56 0.00 0.00 5.69
103 104 1.938625 CAGGGCCCAAAATTTATGCG 58.061 50.000 27.56 0.00 0.00 4.73
104 105 1.210234 AGCAGGGCCCAAAATTTATGC 59.790 47.619 27.56 22.12 0.00 3.14
105 106 4.634199 CATAGCAGGGCCCAAAATTTATG 58.366 43.478 27.56 17.40 0.00 1.90
106 107 3.071457 GCATAGCAGGGCCCAAAATTTAT 59.929 43.478 27.56 9.79 0.00 1.40
107 108 2.433970 GCATAGCAGGGCCCAAAATTTA 59.566 45.455 27.56 7.73 0.00 1.40
108 109 1.210234 GCATAGCAGGGCCCAAAATTT 59.790 47.619 27.56 0.00 0.00 1.82
109 110 0.832626 GCATAGCAGGGCCCAAAATT 59.167 50.000 27.56 7.06 0.00 1.82
110 111 1.394266 CGCATAGCAGGGCCCAAAAT 61.394 55.000 27.56 8.96 0.00 1.82
111 112 2.051518 CGCATAGCAGGGCCCAAAA 61.052 57.895 27.56 6.57 0.00 2.44
112 113 2.440065 CGCATAGCAGGGCCCAAA 60.440 61.111 27.56 6.15 0.00 3.28
113 114 3.280938 AACGCATAGCAGGGCCCAA 62.281 57.895 27.56 6.58 0.00 4.12
114 115 3.727258 AACGCATAGCAGGGCCCA 61.727 61.111 27.56 2.25 0.00 5.36
115 116 3.211963 CAACGCATAGCAGGGCCC 61.212 66.667 16.46 16.46 0.00 5.80
116 117 3.211963 CCAACGCATAGCAGGGCC 61.212 66.667 0.00 0.00 0.00 5.80
117 118 3.892581 GCCAACGCATAGCAGGGC 61.893 66.667 0.00 0.00 33.13 5.19
118 119 3.211963 GGCCAACGCATAGCAGGG 61.212 66.667 0.00 0.00 36.38 4.45
119 120 3.576356 CGGCCAACGCATAGCAGG 61.576 66.667 2.24 0.00 36.38 4.85
120 121 2.511373 TCGGCCAACGCATAGCAG 60.511 61.111 2.24 0.00 43.86 4.24
121 122 2.817834 GTCGGCCAACGCATAGCA 60.818 61.111 2.24 0.00 43.86 3.49
122 123 3.925238 CGTCGGCCAACGCATAGC 61.925 66.667 1.82 0.00 43.86 2.97
134 135 3.120304 GGGTCTTTTGAAAAGATCGTCGG 60.120 47.826 21.69 0.00 0.00 4.79
146 147 1.028905 CAAAGTGGCGGGTCTTTTGA 58.971 50.000 0.00 0.00 32.52 2.69
159 160 2.015736 ATCTAGCCGCTGTCAAAGTG 57.984 50.000 2.16 0.00 36.06 3.16
160 161 3.493350 CCATATCTAGCCGCTGTCAAAGT 60.493 47.826 2.16 0.00 0.00 2.66
164 165 0.318441 GCCATATCTAGCCGCTGTCA 59.682 55.000 2.16 0.00 0.00 3.58
204 206 4.393062 CGTCTTTGTTGCAGTGATAAGGAT 59.607 41.667 0.00 0.00 0.00 3.24
221 223 4.454504 AGAAAATACCGCAACATCGTCTTT 59.545 37.500 0.00 0.00 0.00 2.52
228 230 3.932545 TTGCAGAAAATACCGCAACAT 57.067 38.095 0.00 0.00 39.32 2.71
232 234 2.095263 GCTCTTTGCAGAAAATACCGCA 60.095 45.455 0.00 0.00 42.31 5.69
238 240 5.227908 CAACATGAGCTCTTTGCAGAAAAT 58.772 37.500 16.19 0.00 45.94 1.82
263 265 7.602265 ACACAACCACTATTGCAAATATTTTCC 59.398 33.333 1.71 0.00 32.47 3.13
315 317 7.141100 TGCATTCAACAGCATCATCTATATG 57.859 36.000 0.00 0.00 35.51 1.78
316 318 7.754851 TTGCATTCAACAGCATCATCTATAT 57.245 32.000 0.00 0.00 40.94 0.86
359 361 2.553602 AGTTGCGACATCTTTCATTGCA 59.446 40.909 6.90 0.00 0.00 4.08
360 362 2.912967 CAGTTGCGACATCTTTCATTGC 59.087 45.455 6.90 0.00 0.00 3.56
361 363 2.912967 GCAGTTGCGACATCTTTCATTG 59.087 45.455 6.90 0.00 0.00 2.82
405 408 4.377897 CTCCTTCGTACTCAGGTGTTTTT 58.622 43.478 7.01 0.00 0.00 1.94
414 417 3.708403 TGACTACCTCCTTCGTACTCA 57.292 47.619 0.00 0.00 0.00 3.41
437 440 2.288702 GGATCCCGATCTCATGTGACTG 60.289 54.545 0.00 0.00 37.92 3.51
452 455 1.676006 CAATAGTTGTTGCGGGATCCC 59.324 52.381 22.12 22.12 0.00 3.85
459 462 0.525761 CCCCACCAATAGTTGTTGCG 59.474 55.000 0.00 0.00 0.00 4.85
461 464 2.041081 TCTCCCCCACCAATAGTTGTTG 59.959 50.000 0.00 0.00 0.00 3.33
487 490 3.389983 AGGTTTACAACTGAGCCACTGTA 59.610 43.478 0.00 0.00 0.00 2.74
489 492 2.851195 AGGTTTACAACTGAGCCACTG 58.149 47.619 0.00 0.00 0.00 3.66
529 532 1.895707 GATCGGATGGCTTGGGCAG 60.896 63.158 0.00 0.00 42.43 4.85
531 534 1.037030 TTTGATCGGATGGCTTGGGC 61.037 55.000 0.00 0.00 37.82 5.36
572 575 0.742281 ATGACACACGCATCAGCCTC 60.742 55.000 0.00 0.00 37.52 4.70
586 589 3.942748 GCTTACCATTACCCGAAATGACA 59.057 43.478 6.66 0.00 38.84 3.58
742 746 7.979444 ATCCGAAAAGAAAGTAGTCATGAAA 57.021 32.000 0.00 0.00 0.00 2.69
911 922 1.544246 GCAGCCTTTTTCACCGGTATT 59.456 47.619 6.87 0.00 0.00 1.89
944 957 2.552743 CGTCTGGTATCGATCCAAGCTA 59.447 50.000 0.00 0.00 34.35 3.32
945 958 1.338337 CGTCTGGTATCGATCCAAGCT 59.662 52.381 0.00 0.00 34.35 3.74
946 959 1.772182 CGTCTGGTATCGATCCAAGC 58.228 55.000 0.00 0.00 34.35 4.01
965 978 2.125512 ATCTCGGCTTCGGTGTGC 60.126 61.111 0.00 0.00 34.13 4.57
1030 1043 4.065281 GTCACGGTGCGGCTAGGT 62.065 66.667 2.51 0.00 0.00 3.08
1122 1136 1.203237 TCAGAAGGGGCAAGAGAGACT 60.203 52.381 0.00 0.00 0.00 3.24
1304 1318 4.124351 CCGCAGGCTCCGTCGTTA 62.124 66.667 0.00 0.00 46.14 3.18
1512 1526 1.679680 CGGATCTTGTAGTAGGCGGAA 59.320 52.381 0.00 0.00 0.00 4.30
1690 1712 0.322456 TGCGGTCTTGCAGCCTAAAT 60.322 50.000 0.00 0.00 40.62 1.40
1795 1822 6.387041 ACCTTAAAAACAGAGGTAAACAGC 57.613 37.500 0.00 0.00 41.83 4.40
1813 1840 5.401531 AATCAGTAGCTTCGTGAACCTTA 57.598 39.130 0.00 0.00 0.00 2.69
1903 1934 7.064609 TCGTCTAAAATAACTGATGCCTTTCTG 59.935 37.037 0.00 0.00 0.00 3.02
1984 2015 5.954752 TGGTATGCAAAAGGGTTCATATTCA 59.045 36.000 0.00 0.00 0.00 2.57
2134 4733 3.069016 TCAGTGCTTATATACACCCCACG 59.931 47.826 2.83 0.00 37.51 4.94
2173 4772 8.375493 ACCAATAAACTACTCAGAACCTATCA 57.625 34.615 0.00 0.00 0.00 2.15
2422 5122 6.263617 TGTTACACCTTGGAAGTGGAATTTAC 59.736 38.462 0.00 0.00 40.12 2.01
2514 5214 5.173131 CACGCAAAAAGGATCAACAAACTAC 59.827 40.000 0.00 0.00 0.00 2.73
2841 5785 7.865889 GGAAAGTTTTGTAAACATCTACCTTGG 59.134 37.037 5.23 0.00 0.00 3.61
2844 5788 7.064229 TGGGAAAGTTTTGTAAACATCTACCT 58.936 34.615 5.23 0.00 0.00 3.08
2973 5925 8.539117 TCCATAACTGTCTTTATCTCTGATGA 57.461 34.615 0.00 0.00 0.00 2.92
2974 5926 9.039870 GTTCCATAACTGTCTTTATCTCTGATG 57.960 37.037 0.00 0.00 32.54 3.07
2975 5927 8.986991 AGTTCCATAACTGTCTTTATCTCTGAT 58.013 33.333 0.00 0.00 44.40 2.90
3112 6064 6.936900 TGTAGGAGGAACTTGATTTCTTTCTG 59.063 38.462 0.00 0.00 41.55 3.02
3476 6429 8.504005 AGGATGTTAAAACAAAGTCATAACTCG 58.496 33.333 0.00 0.00 43.03 4.18
3478 6431 9.965824 CAAGGATGTTAAAACAAAGTCATAACT 57.034 29.630 0.00 0.00 43.03 2.24
3486 6439 9.810545 TTTAAGGACAAGGATGTTAAAACAAAG 57.189 29.630 0.00 0.00 43.03 2.77
3489 6442 9.974980 GAATTTAAGGACAAGGATGTTAAAACA 57.025 29.630 0.00 0.00 40.74 2.83
3504 6457 5.497474 TGGGAGCTTAGTGAATTTAAGGAC 58.503 41.667 0.00 0.00 0.00 3.85
3532 6485 2.435059 GACTGAGAGCGCCCCAAC 60.435 66.667 2.29 0.00 0.00 3.77
3558 6511 5.420421 TCAAAATCAAAGGCCCGAATTGATA 59.580 36.000 18.48 5.96 41.58 2.15
3567 6520 5.179929 CAGTCAAATTCAAAATCAAAGGCCC 59.820 40.000 0.00 0.00 0.00 5.80
3571 6524 5.702209 CCCCCAGTCAAATTCAAAATCAAAG 59.298 40.000 0.00 0.00 0.00 2.77
3592 6545 0.111253 CCAATGAGTATCCAGGCCCC 59.889 60.000 0.00 0.00 0.00 5.80
3711 6664 1.762957 CACATATCTGGTTCTCCGGGT 59.237 52.381 0.00 0.00 40.36 5.28
3712 6665 2.039418 TCACATATCTGGTTCTCCGGG 58.961 52.381 0.00 0.00 40.36 5.73
3728 9585 0.904865 ACCATCCGAGAGCCTTCACA 60.905 55.000 0.00 0.00 0.00 3.58
3776 9635 2.202690 CGGACAGGCGCGATAACA 60.203 61.111 12.10 0.00 0.00 2.41
3866 9725 0.885150 TGTAACCGCGCATTCCAACA 60.885 50.000 8.75 0.23 0.00 3.33
3870 9729 1.260561 CTACATGTAACCGCGCATTCC 59.739 52.381 8.75 0.00 0.00 3.01
3876 9735 2.739292 ACTATGCTACATGTAACCGCG 58.261 47.619 7.06 0.00 0.00 6.46
3880 9739 7.376336 CGAACTGACTACTATGCTACATGTAAC 59.624 40.741 7.06 2.93 0.00 2.50
3890 9749 3.550436 GCCTACCGAACTGACTACTATGC 60.550 52.174 0.00 0.00 0.00 3.14
3941 9800 0.673985 GCCCACTGAACCTGGAAAAC 59.326 55.000 0.00 0.00 0.00 2.43
3949 9808 2.007608 GACTAATTCGCCCACTGAACC 58.992 52.381 0.00 0.00 0.00 3.62
3951 9810 3.627395 ATGACTAATTCGCCCACTGAA 57.373 42.857 0.00 0.00 0.00 3.02
3998 9858 7.435068 TTTAATTAGTTTGACTCACAGGAGC 57.565 36.000 0.00 0.00 45.42 4.70
4098 9961 4.933505 TTGCACATTCAAATTCCACTCA 57.066 36.364 0.00 0.00 0.00 3.41
4135 9998 9.981114 AAAAGGAGTAAATAAAAAGTCCACATG 57.019 29.630 0.00 0.00 37.63 3.21
4210 10073 4.449068 CGCTCAAATGGATGTATCTACCAC 59.551 45.833 0.00 0.00 36.49 4.16
4213 10076 5.773575 TCTCGCTCAAATGGATGTATCTAC 58.226 41.667 0.00 0.00 0.00 2.59
4243 10106 2.959707 ACTGATACTCCCTTCGATCCAC 59.040 50.000 0.00 0.00 0.00 4.02
4327 10190 7.413657 GCGATTTTATTAACAACCAGCACTCTA 60.414 37.037 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.