Multiple sequence alignment - TraesCS6D01G227000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G227000 chr6D 100.000 2588 0 0 1 2588 318361008 318358421 0.000000e+00 4780.0
1 TraesCS6D01G227000 chr6A 93.878 1127 40 13 485 1590 455986095 455984977 0.000000e+00 1672.0
2 TraesCS6D01G227000 chr6A 91.117 349 22 4 1587 1929 455984938 455984593 5.040000e-127 464.0
3 TraesCS6D01G227000 chr6A 83.578 408 54 13 2181 2581 455983851 455983450 1.130000e-98 370.0
4 TraesCS6D01G227000 chr6A 86.697 218 16 4 1939 2154 455984055 455983849 2.000000e-56 230.0
5 TraesCS6D01G227000 chr6B 91.813 1136 47 16 472 1590 505709614 505710720 0.000000e+00 1541.0
6 TraesCS6D01G227000 chr6B 86.431 737 77 14 1587 2318 505710759 505711477 0.000000e+00 785.0
7 TraesCS6D01G227000 chr3D 84.759 374 57 0 1 374 24884613 24884240 2.430000e-100 375.0
8 TraesCS6D01G227000 chr4B 83.511 376 60 2 1 376 433320368 433319995 1.470000e-92 350.0
9 TraesCS6D01G227000 chr4A 82.759 377 63 2 1 375 722138520 722138896 4.130000e-88 335.0
10 TraesCS6D01G227000 chr1B 85.507 276 40 0 98 373 437766451 437766726 3.260000e-74 289.0
11 TraesCS6D01G227000 chrUn 89.302 215 23 0 158 372 146288054 146287840 1.180000e-68 270.0
12 TraesCS6D01G227000 chr5A 100.000 33 0 0 290 322 547606079 547606047 7.730000e-06 62.1
13 TraesCS6D01G227000 chr7A 97.143 35 1 0 290 324 720823768 720823802 2.780000e-05 60.2
14 TraesCS6D01G227000 chr2B 97.143 35 1 0 290 324 794418077 794418111 2.780000e-05 60.2
15 TraesCS6D01G227000 chr1D 97.143 35 1 0 290 324 471636106 471636140 2.780000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G227000 chr6D 318358421 318361008 2587 True 4780 4780 100.0000 1 2588 1 chr6D.!!$R1 2587
1 TraesCS6D01G227000 chr6A 455983450 455986095 2645 True 684 1672 88.8175 485 2581 4 chr6A.!!$R1 2096
2 TraesCS6D01G227000 chr6B 505709614 505711477 1863 False 1163 1541 89.1220 472 2318 2 chr6B.!!$F1 1846

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.034059 AGTGCTGTTCGCTTAGCTGT 59.966 50.0 1.76 0.0 40.52 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2008 2612 1.137086 CATGCGTTAGCCTCTGGTAGT 59.863 52.381 0.0 0.0 44.33 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.544721 TCCTGAGATGGCAGAAGTTCT 58.455 47.619 0.00 0.00 38.14 3.01
21 22 2.909006 TCCTGAGATGGCAGAAGTTCTT 59.091 45.455 1.56 0.00 38.14 2.52
22 23 3.008330 CCTGAGATGGCAGAAGTTCTTG 58.992 50.000 1.56 0.43 38.14 3.02
23 24 2.419324 CTGAGATGGCAGAAGTTCTTGC 59.581 50.000 1.56 10.29 38.14 4.01
24 25 2.224597 TGAGATGGCAGAAGTTCTTGCA 60.225 45.455 21.15 12.25 0.00 4.08
25 26 3.015327 GAGATGGCAGAAGTTCTTGCAT 58.985 45.455 21.15 15.01 0.00 3.96
26 27 2.753452 AGATGGCAGAAGTTCTTGCATG 59.247 45.455 21.15 7.04 0.00 4.06
27 28 0.599558 TGGCAGAAGTTCTTGCATGC 59.400 50.000 21.15 11.82 0.00 4.06
28 29 0.599558 GGCAGAAGTTCTTGCATGCA 59.400 50.000 18.46 18.46 35.40 3.96
29 30 1.402456 GGCAGAAGTTCTTGCATGCAG 60.402 52.381 21.50 14.85 35.40 4.41
30 31 1.402456 GCAGAAGTTCTTGCATGCAGG 60.402 52.381 22.93 22.93 33.92 4.85
31 32 2.156917 CAGAAGTTCTTGCATGCAGGA 58.843 47.619 26.87 26.87 0.00 3.86
32 33 2.161808 CAGAAGTTCTTGCATGCAGGAG 59.838 50.000 28.43 20.65 33.64 3.69
33 34 2.157738 GAAGTTCTTGCATGCAGGAGT 58.842 47.619 28.43 18.93 33.64 3.85
34 35 1.531423 AGTTCTTGCATGCAGGAGTG 58.469 50.000 28.43 14.41 33.64 3.51
44 45 4.368391 CAGGAGTGCTGTTCGCTT 57.632 55.556 2.99 0.00 40.11 4.68
45 46 3.514777 CAGGAGTGCTGTTCGCTTA 57.485 52.632 2.99 0.00 40.11 3.09
46 47 1.354040 CAGGAGTGCTGTTCGCTTAG 58.646 55.000 2.99 0.00 40.11 2.18
47 48 0.390472 AGGAGTGCTGTTCGCTTAGC 60.390 55.000 0.00 0.00 40.11 3.09
48 49 0.390472 GGAGTGCTGTTCGCTTAGCT 60.390 55.000 1.76 0.00 40.52 3.32
49 50 0.718343 GAGTGCTGTTCGCTTAGCTG 59.282 55.000 1.76 0.00 40.52 4.24
50 51 0.034059 AGTGCTGTTCGCTTAGCTGT 59.966 50.000 1.76 0.00 40.52 4.40
51 52 0.164647 GTGCTGTTCGCTTAGCTGTG 59.835 55.000 1.76 0.00 40.52 3.66
52 53 1.133458 GCTGTTCGCTTAGCTGTGC 59.867 57.895 1.76 0.00 36.99 4.57
53 54 1.568612 GCTGTTCGCTTAGCTGTGCA 61.569 55.000 1.76 0.00 36.99 4.57
54 55 1.081892 CTGTTCGCTTAGCTGTGCAT 58.918 50.000 1.76 0.00 0.00 3.96
55 56 1.466167 CTGTTCGCTTAGCTGTGCATT 59.534 47.619 1.76 0.00 0.00 3.56
56 57 2.672874 CTGTTCGCTTAGCTGTGCATTA 59.327 45.455 1.76 0.00 0.00 1.90
57 58 3.270027 TGTTCGCTTAGCTGTGCATTAT 58.730 40.909 1.76 0.00 0.00 1.28
58 59 3.309682 TGTTCGCTTAGCTGTGCATTATC 59.690 43.478 1.76 0.00 0.00 1.75
59 60 3.177997 TCGCTTAGCTGTGCATTATCA 57.822 42.857 1.76 0.00 0.00 2.15
60 61 2.866156 TCGCTTAGCTGTGCATTATCAC 59.134 45.455 1.76 0.00 37.48 3.06
61 62 2.347939 CGCTTAGCTGTGCATTATCACG 60.348 50.000 1.76 0.00 39.73 4.35
62 63 2.609459 GCTTAGCTGTGCATTATCACGT 59.391 45.455 0.00 0.00 39.73 4.49
63 64 3.063997 GCTTAGCTGTGCATTATCACGTT 59.936 43.478 0.00 0.00 39.73 3.99
64 65 4.783450 GCTTAGCTGTGCATTATCACGTTC 60.783 45.833 0.00 0.00 39.73 3.95
65 66 2.698803 AGCTGTGCATTATCACGTTCA 58.301 42.857 0.00 0.00 39.73 3.18
66 67 2.674852 AGCTGTGCATTATCACGTTCAG 59.325 45.455 0.00 0.00 39.73 3.02
67 68 2.672874 GCTGTGCATTATCACGTTCAGA 59.327 45.455 0.00 0.00 39.73 3.27
68 69 3.242220 GCTGTGCATTATCACGTTCAGAG 60.242 47.826 0.00 0.00 39.73 3.35
69 70 4.176271 CTGTGCATTATCACGTTCAGAGA 58.824 43.478 0.00 0.00 39.73 3.10
70 71 4.176271 TGTGCATTATCACGTTCAGAGAG 58.824 43.478 0.00 0.00 39.73 3.20
71 72 3.000724 GTGCATTATCACGTTCAGAGAGC 59.999 47.826 0.00 0.00 0.00 4.09
72 73 3.118992 TGCATTATCACGTTCAGAGAGCT 60.119 43.478 0.00 0.00 0.00 4.09
73 74 3.489047 GCATTATCACGTTCAGAGAGCTC 59.511 47.826 5.27 5.27 0.00 4.09
74 75 4.676546 CATTATCACGTTCAGAGAGCTCA 58.323 43.478 17.77 0.00 0.00 4.26
75 76 4.991153 TTATCACGTTCAGAGAGCTCAT 57.009 40.909 17.77 0.20 0.00 2.90
76 77 2.643933 TCACGTTCAGAGAGCTCATG 57.356 50.000 17.77 14.25 0.00 3.07
77 78 1.889170 TCACGTTCAGAGAGCTCATGT 59.111 47.619 17.77 3.08 0.00 3.21
78 79 1.991264 CACGTTCAGAGAGCTCATGTG 59.009 52.381 17.77 12.29 0.00 3.21
79 80 1.067283 ACGTTCAGAGAGCTCATGTGG 60.067 52.381 17.77 9.94 0.00 4.17
80 81 1.203287 CGTTCAGAGAGCTCATGTGGA 59.797 52.381 17.77 1.37 0.00 4.02
81 82 2.734809 CGTTCAGAGAGCTCATGTGGAG 60.735 54.545 17.77 0.00 46.93 3.86
89 90 3.455328 CTCATGTGGAGCTGGACAG 57.545 57.895 0.00 0.00 36.69 3.51
99 100 4.463879 CTGGACAGCCTCGCCCTG 62.464 72.222 0.00 0.00 36.41 4.45
102 103 3.075005 GACAGCCTCGCCCTGGTA 61.075 66.667 0.00 0.00 34.65 3.25
103 104 3.372554 GACAGCCTCGCCCTGGTAC 62.373 68.421 0.00 0.00 34.65 3.34
104 105 3.390521 CAGCCTCGCCCTGGTACA 61.391 66.667 0.00 0.00 0.00 2.90
105 106 2.606519 AGCCTCGCCCTGGTACAA 60.607 61.111 0.00 0.00 38.70 2.41
106 107 2.221299 AGCCTCGCCCTGGTACAAA 61.221 57.895 0.00 0.00 38.70 2.83
107 108 1.302993 GCCTCGCCCTGGTACAAAA 60.303 57.895 0.00 0.00 38.70 2.44
108 109 1.305930 GCCTCGCCCTGGTACAAAAG 61.306 60.000 0.00 0.00 38.70 2.27
109 110 1.305930 CCTCGCCCTGGTACAAAAGC 61.306 60.000 0.00 0.00 38.70 3.51
110 111 0.321653 CTCGCCCTGGTACAAAAGCT 60.322 55.000 0.00 0.00 38.70 3.74
111 112 0.978151 TCGCCCTGGTACAAAAGCTA 59.022 50.000 0.00 0.00 38.70 3.32
112 113 1.348366 TCGCCCTGGTACAAAAGCTAA 59.652 47.619 0.00 0.00 38.70 3.09
113 114 2.156098 CGCCCTGGTACAAAAGCTAAA 58.844 47.619 0.00 0.00 38.70 1.85
114 115 2.095415 CGCCCTGGTACAAAAGCTAAAC 60.095 50.000 0.00 0.00 38.70 2.01
115 116 2.888414 GCCCTGGTACAAAAGCTAAACA 59.112 45.455 0.00 0.00 38.70 2.83
116 117 3.319689 GCCCTGGTACAAAAGCTAAACAA 59.680 43.478 0.00 0.00 38.70 2.83
117 118 4.558697 GCCCTGGTACAAAAGCTAAACAAG 60.559 45.833 0.00 0.00 38.70 3.16
118 119 4.825085 CCCTGGTACAAAAGCTAAACAAGA 59.175 41.667 0.00 0.00 38.70 3.02
119 120 5.476945 CCCTGGTACAAAAGCTAAACAAGAT 59.523 40.000 0.00 0.00 38.70 2.40
120 121 6.381801 CCTGGTACAAAAGCTAAACAAGATG 58.618 40.000 0.00 0.00 38.70 2.90
121 122 6.325919 TGGTACAAAAGCTAAACAAGATGG 57.674 37.500 0.00 0.00 31.92 3.51
122 123 6.065374 TGGTACAAAAGCTAAACAAGATGGA 58.935 36.000 0.00 0.00 31.92 3.41
123 124 6.206634 TGGTACAAAAGCTAAACAAGATGGAG 59.793 38.462 0.00 0.00 31.92 3.86
124 125 6.430000 GGTACAAAAGCTAAACAAGATGGAGA 59.570 38.462 0.00 0.00 0.00 3.71
125 126 6.566197 ACAAAAGCTAAACAAGATGGAGAG 57.434 37.500 0.00 0.00 0.00 3.20
126 127 5.474876 ACAAAAGCTAAACAAGATGGAGAGG 59.525 40.000 0.00 0.00 0.00 3.69
127 128 3.922171 AGCTAAACAAGATGGAGAGGG 57.078 47.619 0.00 0.00 0.00 4.30
128 129 3.454858 AGCTAAACAAGATGGAGAGGGA 58.545 45.455 0.00 0.00 0.00 4.20
129 130 3.198853 AGCTAAACAAGATGGAGAGGGAC 59.801 47.826 0.00 0.00 0.00 4.46
130 131 3.682999 GCTAAACAAGATGGAGAGGGACC 60.683 52.174 0.00 0.00 0.00 4.46
131 132 2.350863 AACAAGATGGAGAGGGACCT 57.649 50.000 0.00 0.00 0.00 3.85
132 133 1.577736 ACAAGATGGAGAGGGACCTG 58.422 55.000 0.00 0.00 0.00 4.00
133 134 1.203364 ACAAGATGGAGAGGGACCTGT 60.203 52.381 0.00 0.00 0.00 4.00
134 135 1.484240 CAAGATGGAGAGGGACCTGTC 59.516 57.143 6.95 6.95 35.84 3.51
135 136 0.712979 AGATGGAGAGGGACCTGTCA 59.287 55.000 16.25 4.42 37.99 3.58
136 137 1.118838 GATGGAGAGGGACCTGTCAG 58.881 60.000 16.25 0.00 37.99 3.51
137 138 0.980231 ATGGAGAGGGACCTGTCAGC 60.980 60.000 16.25 2.02 37.99 4.26
138 139 1.305718 GGAGAGGGACCTGTCAGCT 60.306 63.158 16.25 0.00 37.99 4.24
139 140 1.612395 GGAGAGGGACCTGTCAGCTG 61.612 65.000 16.25 7.63 37.99 4.24
140 141 0.902516 GAGAGGGACCTGTCAGCTGT 60.903 60.000 14.67 0.00 36.49 4.40
141 142 0.902516 AGAGGGACCTGTCAGCTGTC 60.903 60.000 14.67 9.06 0.00 3.51
142 143 2.219325 GAGGGACCTGTCAGCTGTCG 62.219 65.000 14.67 4.84 0.00 4.35
143 144 2.262915 GGACCTGTCAGCTGTCGG 59.737 66.667 14.67 13.34 0.00 4.79
144 145 2.433318 GACCTGTCAGCTGTCGGC 60.433 66.667 14.67 0.00 42.19 5.54
145 146 3.941657 GACCTGTCAGCTGTCGGCC 62.942 68.421 14.67 3.20 43.05 6.13
146 147 4.767255 CCTGTCAGCTGTCGGCCC 62.767 72.222 14.67 0.00 43.05 5.80
147 148 4.007644 CTGTCAGCTGTCGGCCCA 62.008 66.667 14.67 1.69 43.05 5.36
148 149 3.320879 CTGTCAGCTGTCGGCCCAT 62.321 63.158 14.67 0.00 43.05 4.00
149 150 2.821366 GTCAGCTGTCGGCCCATG 60.821 66.667 14.67 0.00 43.05 3.66
150 151 4.100084 TCAGCTGTCGGCCCATGG 62.100 66.667 14.67 4.14 43.05 3.66
159 160 4.828296 GGCCCATGGGTGCAGGAG 62.828 72.222 31.58 4.22 37.65 3.69
160 161 3.731728 GCCCATGGGTGCAGGAGA 61.732 66.667 31.58 0.00 37.65 3.71
161 162 3.065787 GCCCATGGGTGCAGGAGAT 62.066 63.158 31.58 0.00 37.65 2.75
162 163 1.150081 CCCATGGGTGCAGGAGATC 59.850 63.158 23.93 0.00 0.00 2.75
163 164 1.638679 CCCATGGGTGCAGGAGATCA 61.639 60.000 23.93 0.00 0.00 2.92
164 165 0.256752 CCATGGGTGCAGGAGATCAA 59.743 55.000 2.85 0.00 0.00 2.57
165 166 1.676746 CATGGGTGCAGGAGATCAAG 58.323 55.000 0.00 0.00 0.00 3.02
166 167 1.211212 CATGGGTGCAGGAGATCAAGA 59.789 52.381 0.00 0.00 0.00 3.02
167 168 0.615331 TGGGTGCAGGAGATCAAGAC 59.385 55.000 0.00 0.00 0.00 3.01
168 169 0.460987 GGGTGCAGGAGATCAAGACG 60.461 60.000 0.00 0.00 0.00 4.18
169 170 0.532573 GGTGCAGGAGATCAAGACGA 59.467 55.000 0.00 0.00 0.00 4.20
170 171 1.137872 GGTGCAGGAGATCAAGACGAT 59.862 52.381 0.00 0.00 36.91 3.73
171 172 2.200067 GTGCAGGAGATCAAGACGATG 58.800 52.381 0.00 0.00 33.17 3.84
172 173 1.216122 GCAGGAGATCAAGACGATGC 58.784 55.000 0.00 0.00 33.17 3.91
173 174 1.202510 GCAGGAGATCAAGACGATGCT 60.203 52.381 0.00 0.00 33.17 3.79
174 175 2.741612 CAGGAGATCAAGACGATGCTC 58.258 52.381 0.00 0.00 33.17 4.26
175 176 1.336440 AGGAGATCAAGACGATGCTCG 59.664 52.381 0.00 4.36 46.93 5.03
176 177 1.601663 GGAGATCAAGACGATGCTCGG 60.602 57.143 9.75 0.00 45.59 4.63
177 178 0.387202 AGATCAAGACGATGCTCGGG 59.613 55.000 9.75 0.00 45.59 5.14
178 179 0.103208 GATCAAGACGATGCTCGGGT 59.897 55.000 9.75 0.00 45.59 5.28
179 180 0.103208 ATCAAGACGATGCTCGGGTC 59.897 55.000 9.75 1.10 45.59 4.46
180 181 0.965866 TCAAGACGATGCTCGGGTCT 60.966 55.000 9.75 3.19 45.59 3.85
181 182 0.738975 CAAGACGATGCTCGGGTCTA 59.261 55.000 9.75 0.00 45.59 2.59
182 183 1.338337 CAAGACGATGCTCGGGTCTAT 59.662 52.381 9.75 0.00 45.59 1.98
183 184 0.955178 AGACGATGCTCGGGTCTATG 59.045 55.000 9.75 0.00 45.59 2.23
184 185 0.039074 GACGATGCTCGGGTCTATGG 60.039 60.000 9.75 0.00 45.59 2.74
185 186 0.467474 ACGATGCTCGGGTCTATGGA 60.467 55.000 9.75 0.00 45.59 3.41
186 187 0.242286 CGATGCTCGGGTCTATGGAG 59.758 60.000 0.00 0.00 36.00 3.86
187 188 0.605589 GATGCTCGGGTCTATGGAGG 59.394 60.000 0.00 0.00 0.00 4.30
188 189 0.188587 ATGCTCGGGTCTATGGAGGA 59.811 55.000 0.00 0.00 32.63 3.71
189 190 0.468214 TGCTCGGGTCTATGGAGGAG 60.468 60.000 0.00 0.00 0.00 3.69
190 191 1.182385 GCTCGGGTCTATGGAGGAGG 61.182 65.000 4.58 0.00 0.00 4.30
191 192 1.152525 TCGGGTCTATGGAGGAGGC 60.153 63.158 0.00 0.00 0.00 4.70
192 193 2.210711 CGGGTCTATGGAGGAGGCC 61.211 68.421 0.00 0.00 38.02 5.19
193 194 1.074471 GGGTCTATGGAGGAGGCCA 60.074 63.158 5.01 0.00 40.74 5.36
194 195 0.694444 GGGTCTATGGAGGAGGCCAA 60.694 60.000 5.01 0.00 40.74 4.52
195 196 0.761802 GGTCTATGGAGGAGGCCAAG 59.238 60.000 5.01 0.00 42.16 3.61
196 197 0.761802 GTCTATGGAGGAGGCCAAGG 59.238 60.000 5.01 0.00 42.16 3.61
197 198 0.343372 TCTATGGAGGAGGCCAAGGT 59.657 55.000 5.01 0.00 42.16 3.50
198 199 0.761802 CTATGGAGGAGGCCAAGGTC 59.238 60.000 5.01 0.00 42.16 3.85
199 200 0.044092 TATGGAGGAGGCCAAGGTCA 59.956 55.000 5.01 0.00 42.16 4.02
200 201 1.566298 ATGGAGGAGGCCAAGGTCAC 61.566 60.000 5.01 0.00 42.16 3.67
201 202 2.224159 GGAGGAGGCCAAGGTCACA 61.224 63.158 5.01 0.00 0.00 3.58
202 203 1.566298 GGAGGAGGCCAAGGTCACAT 61.566 60.000 5.01 0.00 0.00 3.21
203 204 0.393537 GAGGAGGCCAAGGTCACATG 60.394 60.000 5.01 0.00 0.00 3.21
204 205 1.379044 GGAGGCCAAGGTCACATGG 60.379 63.158 5.01 0.00 39.80 3.66
205 206 1.685224 GAGGCCAAGGTCACATGGA 59.315 57.895 5.01 0.00 39.12 3.41
206 207 0.257039 GAGGCCAAGGTCACATGGAT 59.743 55.000 5.01 0.00 39.12 3.41
207 208 0.706433 AGGCCAAGGTCACATGGATT 59.294 50.000 5.01 0.00 39.12 3.01
208 209 1.106285 GGCCAAGGTCACATGGATTC 58.894 55.000 0.00 0.00 39.12 2.52
209 210 0.734889 GCCAAGGTCACATGGATTCG 59.265 55.000 3.08 0.00 39.12 3.34
210 211 0.734889 CCAAGGTCACATGGATTCGC 59.265 55.000 0.00 0.00 39.12 4.70
211 212 0.734889 CAAGGTCACATGGATTCGCC 59.265 55.000 0.00 0.00 37.10 5.54
212 213 0.744414 AAGGTCACATGGATTCGCCG 60.744 55.000 0.00 0.00 40.66 6.46
213 214 1.153449 GGTCACATGGATTCGCCGA 60.153 57.895 0.00 0.00 40.66 5.54
214 215 0.532862 GGTCACATGGATTCGCCGAT 60.533 55.000 0.00 0.00 40.66 4.18
215 216 0.861837 GTCACATGGATTCGCCGATC 59.138 55.000 0.00 0.00 40.66 3.69
216 217 0.597377 TCACATGGATTCGCCGATCG 60.597 55.000 8.51 8.51 40.66 3.69
217 218 1.300931 ACATGGATTCGCCGATCGG 60.301 57.895 30.03 30.03 40.66 4.18
218 219 2.029288 CATGGATTCGCCGATCGGG 61.029 63.158 33.98 23.49 40.66 5.14
226 227 4.675404 GCCGATCGGGGAATGTAG 57.325 61.111 33.98 7.06 35.78 2.74
227 228 1.668151 GCCGATCGGGGAATGTAGC 60.668 63.158 33.98 13.48 35.78 3.58
228 229 1.004918 CCGATCGGGGAATGTAGCC 60.005 63.158 26.95 0.00 0.00 3.93
229 230 1.372997 CGATCGGGGAATGTAGCCG 60.373 63.158 7.38 0.00 0.00 5.52
230 231 1.668151 GATCGGGGAATGTAGCCGC 60.668 63.158 0.00 0.00 35.22 6.53
231 232 2.100879 GATCGGGGAATGTAGCCGCT 62.101 60.000 0.00 0.00 36.31 5.52
232 233 2.100879 ATCGGGGAATGTAGCCGCTC 62.101 60.000 0.00 0.00 36.31 5.03
233 234 2.908015 GGGGAATGTAGCCGCTCA 59.092 61.111 0.00 0.00 35.64 4.26
234 235 1.451936 GGGGAATGTAGCCGCTCAT 59.548 57.895 0.00 0.00 35.64 2.90
235 236 0.685097 GGGGAATGTAGCCGCTCATA 59.315 55.000 0.00 0.00 35.64 2.15
236 237 1.071699 GGGGAATGTAGCCGCTCATAA 59.928 52.381 0.00 0.00 35.64 1.90
237 238 2.290323 GGGGAATGTAGCCGCTCATAAT 60.290 50.000 0.00 0.00 35.64 1.28
238 239 3.003480 GGGAATGTAGCCGCTCATAATC 58.997 50.000 0.00 0.00 0.00 1.75
239 240 3.307059 GGGAATGTAGCCGCTCATAATCT 60.307 47.826 0.00 0.00 0.00 2.40
240 241 3.929610 GGAATGTAGCCGCTCATAATCTC 59.070 47.826 0.00 0.00 0.00 2.75
241 242 2.706555 TGTAGCCGCTCATAATCTCG 57.293 50.000 0.00 0.00 0.00 4.04
242 243 1.335964 TGTAGCCGCTCATAATCTCGC 60.336 52.381 0.00 0.00 0.00 5.03
243 244 1.068194 GTAGCCGCTCATAATCTCGCT 60.068 52.381 0.00 0.00 0.00 4.93
244 245 0.038709 AGCCGCTCATAATCTCGCTC 60.039 55.000 0.00 0.00 0.00 5.03
245 246 1.340657 GCCGCTCATAATCTCGCTCG 61.341 60.000 0.00 0.00 0.00 5.03
246 247 0.039978 CCGCTCATAATCTCGCTCGT 60.040 55.000 0.00 0.00 0.00 4.18
247 248 1.048494 CGCTCATAATCTCGCTCGTG 58.952 55.000 0.00 0.00 0.00 4.35
248 249 1.598183 CGCTCATAATCTCGCTCGTGT 60.598 52.381 0.00 0.00 0.00 4.49
249 250 2.349532 CGCTCATAATCTCGCTCGTGTA 60.350 50.000 0.00 0.00 0.00 2.90
250 251 3.230355 GCTCATAATCTCGCTCGTGTAG 58.770 50.000 0.00 0.00 0.00 2.74
251 252 3.816091 CTCATAATCTCGCTCGTGTAGG 58.184 50.000 0.00 0.00 0.00 3.18
252 253 2.552743 TCATAATCTCGCTCGTGTAGGG 59.447 50.000 0.00 0.00 39.48 3.53
253 254 1.315690 TAATCTCGCTCGTGTAGGGG 58.684 55.000 0.00 0.00 38.66 4.79
254 255 0.683504 AATCTCGCTCGTGTAGGGGT 60.684 55.000 0.00 0.00 38.66 4.95
255 256 0.182061 ATCTCGCTCGTGTAGGGGTA 59.818 55.000 0.00 0.00 38.66 3.69
256 257 0.463295 TCTCGCTCGTGTAGGGGTAG 60.463 60.000 0.00 0.00 38.66 3.18
257 258 1.445716 CTCGCTCGTGTAGGGGTAGG 61.446 65.000 0.00 0.00 38.66 3.18
258 259 1.452651 CGCTCGTGTAGGGGTAGGA 60.453 63.158 0.00 0.00 34.56 2.94
259 260 1.445716 CGCTCGTGTAGGGGTAGGAG 61.446 65.000 0.00 0.00 34.56 3.69
260 261 0.106819 GCTCGTGTAGGGGTAGGAGA 60.107 60.000 0.00 0.00 0.00 3.71
261 262 1.970092 CTCGTGTAGGGGTAGGAGAG 58.030 60.000 0.00 0.00 0.00 3.20
262 263 1.489649 CTCGTGTAGGGGTAGGAGAGA 59.510 57.143 0.00 0.00 0.00 3.10
263 264 1.918262 TCGTGTAGGGGTAGGAGAGAA 59.082 52.381 0.00 0.00 0.00 2.87
264 265 2.022934 CGTGTAGGGGTAGGAGAGAAC 58.977 57.143 0.00 0.00 0.00 3.01
265 266 2.386779 GTGTAGGGGTAGGAGAGAACC 58.613 57.143 0.00 0.00 34.85 3.62
266 267 1.064166 TGTAGGGGTAGGAGAGAACCG 60.064 57.143 0.00 0.00 36.57 4.44
267 268 1.064091 GTAGGGGTAGGAGAGAACCGT 60.064 57.143 0.00 0.00 36.57 4.83
268 269 0.412640 AGGGGTAGGAGAGAACCGTT 59.587 55.000 0.00 0.00 36.57 4.44
269 270 0.822811 GGGGTAGGAGAGAACCGTTC 59.177 60.000 2.81 2.81 36.57 3.95
270 271 0.455005 GGGTAGGAGAGAACCGTTCG 59.545 60.000 5.62 0.00 36.57 3.95
271 272 0.455005 GGTAGGAGAGAACCGTTCGG 59.545 60.000 9.81 9.81 34.73 4.30
272 273 1.457346 GTAGGAGAGAACCGTTCGGA 58.543 55.000 18.28 0.00 34.73 4.55
273 274 1.401199 GTAGGAGAGAACCGTTCGGAG 59.599 57.143 18.28 0.00 34.73 4.63
274 275 1.153804 GGAGAGAACCGTTCGGAGC 60.154 63.158 18.28 8.80 34.02 4.70
275 276 1.596895 GGAGAGAACCGTTCGGAGCT 61.597 60.000 18.28 13.16 34.02 4.09
276 277 1.093159 GAGAGAACCGTTCGGAGCTA 58.907 55.000 18.28 0.00 34.02 3.32
277 278 1.677052 GAGAGAACCGTTCGGAGCTAT 59.323 52.381 18.28 10.84 34.02 2.97
278 279 1.405821 AGAGAACCGTTCGGAGCTATG 59.594 52.381 18.28 0.00 34.02 2.23
279 280 0.460311 AGAACCGTTCGGAGCTATGG 59.540 55.000 18.28 0.00 34.02 2.74
280 281 0.529992 GAACCGTTCGGAGCTATGGG 60.530 60.000 18.28 0.00 0.00 4.00
281 282 1.262640 AACCGTTCGGAGCTATGGGT 61.263 55.000 18.28 0.00 0.00 4.51
282 283 1.227263 CCGTTCGGAGCTATGGGTG 60.227 63.158 5.19 0.00 0.00 4.61
283 284 1.227263 CGTTCGGAGCTATGGGTGG 60.227 63.158 0.00 0.00 0.00 4.61
284 285 1.146263 GTTCGGAGCTATGGGTGGG 59.854 63.158 0.00 0.00 0.00 4.61
285 286 1.002403 TTCGGAGCTATGGGTGGGA 59.998 57.895 0.00 0.00 0.00 4.37
286 287 0.399949 TTCGGAGCTATGGGTGGGAT 60.400 55.000 0.00 0.00 0.00 3.85
287 288 0.832135 TCGGAGCTATGGGTGGGATC 60.832 60.000 0.00 0.00 0.00 3.36
288 289 1.121407 CGGAGCTATGGGTGGGATCA 61.121 60.000 0.00 0.00 0.00 2.92
289 290 0.398318 GGAGCTATGGGTGGGATCAC 59.602 60.000 0.00 0.00 42.91 3.06
303 304 3.953542 GGATCACCCCCAGACTTTATT 57.046 47.619 0.00 0.00 0.00 1.40
304 305 4.251103 GGATCACCCCCAGACTTTATTT 57.749 45.455 0.00 0.00 0.00 1.40
305 306 4.610333 GGATCACCCCCAGACTTTATTTT 58.390 43.478 0.00 0.00 0.00 1.82
306 307 4.402474 GGATCACCCCCAGACTTTATTTTG 59.598 45.833 0.00 0.00 0.00 2.44
307 308 3.161866 TCACCCCCAGACTTTATTTTGC 58.838 45.455 0.00 0.00 0.00 3.68
308 309 2.896685 CACCCCCAGACTTTATTTTGCA 59.103 45.455 0.00 0.00 0.00 4.08
309 310 3.515104 CACCCCCAGACTTTATTTTGCAT 59.485 43.478 0.00 0.00 0.00 3.96
310 311 3.515104 ACCCCCAGACTTTATTTTGCATG 59.485 43.478 0.00 0.00 0.00 4.06
311 312 3.515104 CCCCCAGACTTTATTTTGCATGT 59.485 43.478 0.00 0.00 0.00 3.21
312 313 4.709397 CCCCCAGACTTTATTTTGCATGTA 59.291 41.667 0.00 0.00 0.00 2.29
313 314 5.186797 CCCCCAGACTTTATTTTGCATGTAA 59.813 40.000 0.00 0.00 0.00 2.41
314 315 6.127083 CCCCCAGACTTTATTTTGCATGTAAT 60.127 38.462 0.00 0.00 0.00 1.89
315 316 7.330262 CCCCAGACTTTATTTTGCATGTAATT 58.670 34.615 0.00 0.00 0.00 1.40
316 317 7.823799 CCCCAGACTTTATTTTGCATGTAATTT 59.176 33.333 0.00 0.00 0.00 1.82
317 318 8.872845 CCCAGACTTTATTTTGCATGTAATTTC 58.127 33.333 0.00 0.00 0.00 2.17
318 319 9.421806 CCAGACTTTATTTTGCATGTAATTTCA 57.578 29.630 0.00 0.00 0.00 2.69
322 323 9.128107 ACTTTATTTTGCATGTAATTTCAGACG 57.872 29.630 0.00 0.00 0.00 4.18
323 324 9.340695 CTTTATTTTGCATGTAATTTCAGACGA 57.659 29.630 0.00 0.00 0.00 4.20
324 325 8.667987 TTATTTTGCATGTAATTTCAGACGAC 57.332 30.769 0.00 0.00 0.00 4.34
325 326 5.681337 TTTGCATGTAATTTCAGACGACA 57.319 34.783 0.00 0.00 0.00 4.35
326 327 5.878332 TTGCATGTAATTTCAGACGACAT 57.122 34.783 0.00 0.00 0.00 3.06
327 328 5.878332 TGCATGTAATTTCAGACGACATT 57.122 34.783 0.00 0.00 0.00 2.71
328 329 5.868257 TGCATGTAATTTCAGACGACATTC 58.132 37.500 0.00 0.00 0.00 2.67
329 330 5.163764 TGCATGTAATTTCAGACGACATTCC 60.164 40.000 0.00 0.00 0.00 3.01
330 331 5.065218 GCATGTAATTTCAGACGACATTCCT 59.935 40.000 0.00 0.00 0.00 3.36
331 332 6.257849 GCATGTAATTTCAGACGACATTCCTA 59.742 38.462 0.00 0.00 0.00 2.94
332 333 7.517417 GCATGTAATTTCAGACGACATTCCTAG 60.517 40.741 0.00 0.00 0.00 3.02
333 334 5.810587 TGTAATTTCAGACGACATTCCTAGC 59.189 40.000 0.00 0.00 0.00 3.42
334 335 4.744795 ATTTCAGACGACATTCCTAGCT 57.255 40.909 0.00 0.00 0.00 3.32
335 336 4.537135 TTTCAGACGACATTCCTAGCTT 57.463 40.909 0.00 0.00 0.00 3.74
336 337 3.784701 TCAGACGACATTCCTAGCTTC 57.215 47.619 0.00 0.00 0.00 3.86
337 338 2.097629 TCAGACGACATTCCTAGCTTCG 59.902 50.000 0.00 0.00 35.80 3.79
338 339 1.201343 GACGACATTCCTAGCTTCGC 58.799 55.000 0.00 0.00 32.91 4.70
339 340 0.818296 ACGACATTCCTAGCTTCGCT 59.182 50.000 0.00 0.00 43.41 4.93
340 341 1.204941 ACGACATTCCTAGCTTCGCTT 59.795 47.619 0.00 0.00 40.44 4.68
341 342 2.426024 ACGACATTCCTAGCTTCGCTTA 59.574 45.455 0.00 0.00 40.44 3.09
342 343 3.119245 ACGACATTCCTAGCTTCGCTTAA 60.119 43.478 0.00 0.00 40.44 1.85
343 344 3.863424 CGACATTCCTAGCTTCGCTTAAA 59.137 43.478 0.00 0.00 40.44 1.52
344 345 4.508124 CGACATTCCTAGCTTCGCTTAAAT 59.492 41.667 0.00 0.00 40.44 1.40
345 346 5.690409 CGACATTCCTAGCTTCGCTTAAATA 59.310 40.000 0.00 0.00 40.44 1.40
346 347 6.200286 CGACATTCCTAGCTTCGCTTAAATAA 59.800 38.462 0.00 0.00 40.44 1.40
347 348 7.254319 CGACATTCCTAGCTTCGCTTAAATAAA 60.254 37.037 0.00 0.00 40.44 1.40
348 349 7.920738 ACATTCCTAGCTTCGCTTAAATAAAG 58.079 34.615 0.00 0.00 40.44 1.85
367 368 4.734652 GGCACGATTTTCCCCTCA 57.265 55.556 0.00 0.00 0.00 3.86
368 369 2.955609 GGCACGATTTTCCCCTCAA 58.044 52.632 0.00 0.00 0.00 3.02
369 370 1.253100 GGCACGATTTTCCCCTCAAA 58.747 50.000 0.00 0.00 0.00 2.69
370 371 1.616374 GGCACGATTTTCCCCTCAAAA 59.384 47.619 0.00 0.00 0.00 2.44
371 372 2.036604 GGCACGATTTTCCCCTCAAAAA 59.963 45.455 0.00 0.00 0.00 1.94
409 410 9.912634 AAGAAAAGATCATTTATTTTTCTCGCA 57.087 25.926 14.79 0.00 44.60 5.10
410 411 9.912634 AGAAAAGATCATTTATTTTTCTCGCAA 57.087 25.926 10.66 0.00 42.89 4.85
438 439 9.649167 AAAGATCATTTATTTGCTCAGAAAAGG 57.351 29.630 0.00 0.00 0.00 3.11
439 440 8.585471 AGATCATTTATTTGCTCAGAAAAGGA 57.415 30.769 0.00 0.00 0.00 3.36
440 441 9.028284 AGATCATTTATTTGCTCAGAAAAGGAA 57.972 29.630 0.00 0.00 0.00 3.36
441 442 9.643693 GATCATTTATTTGCTCAGAAAAGGAAA 57.356 29.630 0.00 0.00 40.26 3.13
442 443 8.816640 TCATTTATTTGCTCAGAAAAGGAAAC 57.183 30.769 0.00 0.00 39.05 2.78
443 444 7.872483 TCATTTATTTGCTCAGAAAAGGAAACC 59.128 33.333 0.00 0.00 39.05 3.27
444 445 4.607293 ATTTGCTCAGAAAAGGAAACCC 57.393 40.909 0.00 0.00 39.05 4.11
445 446 3.312736 TTGCTCAGAAAAGGAAACCCT 57.687 42.857 0.00 0.00 34.97 4.34
446 447 2.586425 TGCTCAGAAAAGGAAACCCTG 58.414 47.619 0.00 0.00 33.44 4.45
447 448 1.270826 GCTCAGAAAAGGAAACCCTGC 59.729 52.381 0.00 0.00 33.44 4.85
448 449 2.868899 CTCAGAAAAGGAAACCCTGCT 58.131 47.619 0.00 0.00 33.44 4.24
449 450 3.810743 GCTCAGAAAAGGAAACCCTGCTA 60.811 47.826 0.00 0.00 33.44 3.49
450 451 4.398319 CTCAGAAAAGGAAACCCTGCTAA 58.602 43.478 0.00 0.00 33.44 3.09
451 452 4.998051 TCAGAAAAGGAAACCCTGCTAAT 58.002 39.130 0.00 0.00 33.44 1.73
452 453 5.010282 TCAGAAAAGGAAACCCTGCTAATC 58.990 41.667 0.00 0.00 33.44 1.75
453 454 4.158579 CAGAAAAGGAAACCCTGCTAATCC 59.841 45.833 0.00 0.00 33.44 3.01
454 455 4.044698 AGAAAAGGAAACCCTGCTAATCCT 59.955 41.667 0.00 0.00 42.22 3.24
455 456 3.372440 AAGGAAACCCTGCTAATCCTG 57.628 47.619 0.00 0.00 40.33 3.86
456 457 1.566231 AGGAAACCCTGCTAATCCTGG 59.434 52.381 0.00 0.00 39.03 4.45
457 458 1.285078 GGAAACCCTGCTAATCCTGGT 59.715 52.381 0.00 0.00 0.00 4.00
458 459 2.508300 GGAAACCCTGCTAATCCTGGTA 59.492 50.000 0.00 0.00 0.00 3.25
459 460 3.433740 GGAAACCCTGCTAATCCTGGTAG 60.434 52.174 0.00 0.00 0.00 3.18
460 461 1.132500 ACCCTGCTAATCCTGGTAGC 58.868 55.000 8.89 8.89 43.57 3.58
461 462 1.344496 ACCCTGCTAATCCTGGTAGCT 60.344 52.381 15.02 0.00 43.65 3.32
462 463 1.771255 CCCTGCTAATCCTGGTAGCTT 59.229 52.381 15.02 0.01 43.65 3.74
463 464 2.173569 CCCTGCTAATCCTGGTAGCTTT 59.826 50.000 15.02 0.00 43.65 3.51
464 465 3.372025 CCCTGCTAATCCTGGTAGCTTTT 60.372 47.826 15.02 0.00 43.65 2.27
465 466 4.273318 CCTGCTAATCCTGGTAGCTTTTT 58.727 43.478 15.02 0.00 43.65 1.94
466 467 4.096984 CCTGCTAATCCTGGTAGCTTTTTG 59.903 45.833 15.02 3.78 43.65 2.44
467 468 4.016444 TGCTAATCCTGGTAGCTTTTTGG 58.984 43.478 15.02 0.00 43.65 3.28
468 469 4.263727 TGCTAATCCTGGTAGCTTTTTGGA 60.264 41.667 15.02 0.00 43.65 3.53
469 470 4.336713 GCTAATCCTGGTAGCTTTTTGGAG 59.663 45.833 8.62 0.00 40.71 3.86
470 471 4.657814 AATCCTGGTAGCTTTTTGGAGA 57.342 40.909 0.00 0.00 0.00 3.71
502 503 1.017387 GAAAATCAGGAAGGCGCGAT 58.983 50.000 12.10 0.00 0.00 4.58
516 517 0.594284 CGCGATACCTTTCTCCCGAC 60.594 60.000 0.00 0.00 0.00 4.79
531 532 0.528684 CCGACTCCTCCGCATTCTTC 60.529 60.000 0.00 0.00 0.00 2.87
532 533 0.457851 CGACTCCTCCGCATTCTTCT 59.542 55.000 0.00 0.00 0.00 2.85
558 567 1.818674 CCCCCGTCTTTTGATCCAAAG 59.181 52.381 12.06 12.06 34.72 2.77
559 568 2.514803 CCCCGTCTTTTGATCCAAAGT 58.485 47.619 16.48 0.00 34.72 2.66
560 569 3.560453 CCCCCGTCTTTTGATCCAAAGTA 60.560 47.826 16.48 4.01 34.72 2.24
723 736 2.486966 GAATTGACCGCTGCCTGC 59.513 61.111 0.00 0.00 38.57 4.85
814 832 2.811410 ACGTATACTCCAACCACAGGA 58.189 47.619 0.56 0.00 0.00 3.86
866 884 2.753043 AAAGCATCGCCCTGCAGG 60.753 61.111 26.87 26.87 44.77 4.85
922 940 1.613437 CCGTTTCCAACAAGCCAAGAT 59.387 47.619 0.00 0.00 0.00 2.40
927 945 4.908601 TTCCAACAAGCCAAGATAGAGA 57.091 40.909 0.00 0.00 0.00 3.10
929 947 4.836825 TCCAACAAGCCAAGATAGAGAAG 58.163 43.478 0.00 0.00 0.00 2.85
933 951 3.122297 CAAGCCAAGATAGAGAAGCTCG 58.878 50.000 0.00 0.00 35.36 5.03
934 952 2.660572 AGCCAAGATAGAGAAGCTCGA 58.339 47.619 0.00 0.00 35.36 4.04
935 953 2.622942 AGCCAAGATAGAGAAGCTCGAG 59.377 50.000 8.45 8.45 35.36 4.04
938 958 2.622942 CAAGATAGAGAAGCTCGAGCCT 59.377 50.000 32.94 23.64 43.38 4.58
970 993 1.086067 TAGCTCAAGCAGTGCATCGC 61.086 55.000 19.20 13.60 45.16 4.58
1621 1690 6.664978 CGTACATATTATACGGTGTGTGTC 57.335 41.667 7.98 0.00 41.33 3.67
1627 1701 2.543777 ATACGGTGTGTGTCTGCTTT 57.456 45.000 0.00 0.00 0.00 3.51
1628 1702 1.577468 TACGGTGTGTGTCTGCTTTG 58.423 50.000 0.00 0.00 0.00 2.77
1629 1703 1.009675 CGGTGTGTGTCTGCTTTGC 60.010 57.895 0.00 0.00 0.00 3.68
1631 1705 0.740737 GGTGTGTGTCTGCTTTGCTT 59.259 50.000 0.00 0.00 0.00 3.91
1768 1843 3.041946 ACTAATCAGACCTCCCATGGAC 58.958 50.000 15.22 0.00 0.00 4.02
1776 1851 0.914644 CCTCCCATGGACTGTCACAT 59.085 55.000 15.22 7.89 0.00 3.21
1778 1853 2.707791 CCTCCCATGGACTGTCACATAT 59.292 50.000 15.22 0.00 0.00 1.78
1779 1854 3.137176 CCTCCCATGGACTGTCACATATT 59.863 47.826 15.22 0.00 0.00 1.28
1785 1860 7.671819 TCCCATGGACTGTCACATATTTTTAAA 59.328 33.333 15.22 0.00 0.00 1.52
1809 1884 9.517868 AAATGCCAAATTCTTCATGGAAAATTA 57.482 25.926 0.00 0.00 36.27 1.40
1812 1887 7.603404 TGCCAAATTCTTCATGGAAAATTACAG 59.397 33.333 0.00 0.00 36.27 2.74
1838 1913 5.878669 TGTATGACTATACACGACACAGAGT 59.121 40.000 0.00 0.00 43.12 3.24
1840 1915 5.043189 TGACTATACACGACACAGAGTTG 57.957 43.478 0.00 0.00 37.66 3.16
1920 1996 1.295101 CTCACCGCCCACATACACA 59.705 57.895 0.00 0.00 0.00 3.72
1929 2005 3.418047 GCCCACATACACAACCTTTAGT 58.582 45.455 0.00 0.00 0.00 2.24
1976 2580 3.118445 AGCCTCTTCTACCAAGAGAATGC 60.118 47.826 12.10 7.67 44.96 3.56
2008 2612 5.104151 TGCATTGGATTTAGACCATACCAGA 60.104 40.000 0.00 0.00 37.26 3.86
2053 2657 2.034001 CACCGTGTCGTTCTTGTTCTTC 60.034 50.000 0.00 0.00 0.00 2.87
2121 2727 6.647067 GCTGTTAGAGACTGTATTTGTTCTGT 59.353 38.462 0.00 0.00 0.00 3.41
2125 2731 6.161855 AGAGACTGTATTTGTTCTGTGTGA 57.838 37.500 0.00 0.00 0.00 3.58
2137 2743 3.238788 TCTGTGTGAGGAGTGGAGTTA 57.761 47.619 0.00 0.00 0.00 2.24
2144 2750 4.841813 TGTGAGGAGTGGAGTTATTTGGTA 59.158 41.667 0.00 0.00 0.00 3.25
2145 2751 5.176592 GTGAGGAGTGGAGTTATTTGGTAC 58.823 45.833 0.00 0.00 0.00 3.34
2146 2752 4.081862 TGAGGAGTGGAGTTATTTGGTACG 60.082 45.833 0.00 0.00 0.00 3.67
2149 2755 3.930848 GAGTGGAGTTATTTGGTACGTGG 59.069 47.826 0.00 0.00 0.00 4.94
2155 2761 4.706035 AGTTATTTGGTACGTGGTTGTGA 58.294 39.130 0.00 0.00 0.00 3.58
2157 2763 6.465948 AGTTATTTGGTACGTGGTTGTGATA 58.534 36.000 0.00 0.00 0.00 2.15
2170 2776 6.238103 CGTGGTTGTGATATCCTTACATGTTC 60.238 42.308 2.30 0.00 0.00 3.18
2171 2777 6.823689 GTGGTTGTGATATCCTTACATGTTCT 59.176 38.462 2.30 0.00 0.00 3.01
2172 2778 6.823182 TGGTTGTGATATCCTTACATGTTCTG 59.177 38.462 2.30 0.00 0.00 3.02
2174 2780 6.560003 TGTGATATCCTTACATGTTCTGGT 57.440 37.500 2.30 0.00 0.00 4.00
2177 2783 6.647067 GTGATATCCTTACATGTTCTGGTAGC 59.353 42.308 2.30 0.00 0.00 3.58
2178 2784 6.326323 TGATATCCTTACATGTTCTGGTAGCA 59.674 38.462 2.30 0.00 0.00 3.49
2185 2792 4.315803 ACATGTTCTGGTAGCAGTGTTAC 58.684 43.478 20.76 8.53 0.00 2.50
2208 2815 2.224378 CGATGATGGTTATGTGAGCCCT 60.224 50.000 0.00 0.00 0.00 5.19
2211 2818 4.046286 TGATGGTTATGTGAGCCCTTTT 57.954 40.909 0.00 0.00 0.00 2.27
2213 2820 5.575157 TGATGGTTATGTGAGCCCTTTTTA 58.425 37.500 0.00 0.00 0.00 1.52
2282 2889 0.613012 GGGCTGGCCAATGAAGTTCT 60.613 55.000 16.34 0.00 37.98 3.01
2303 2910 3.429080 CTCGCTCAGCTCAGCTCCC 62.429 68.421 8.35 0.00 36.40 4.30
2305 2912 2.124060 CGCTCAGCTCAGCTCCCTA 61.124 63.158 8.35 0.00 36.40 3.53
2354 2961 3.515630 CATTCGCTTCACTTCTAGCTCA 58.484 45.455 0.00 0.00 35.25 4.26
2362 2969 5.522097 GCTTCACTTCTAGCTCAGAATAACC 59.478 44.000 0.00 0.00 42.44 2.85
2369 2976 3.669251 AGCTCAGAATAACCGGCTATC 57.331 47.619 0.00 0.00 0.00 2.08
2386 2993 7.927629 ACCGGCTATCGTATTTACTTTATTTGA 59.072 33.333 0.00 0.00 37.11 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.544721 AGAACTTCTGCCATCTCAGGA 58.455 47.619 0.00 0.00 34.91 3.86
1 2 3.008330 CAAGAACTTCTGCCATCTCAGG 58.992 50.000 0.00 0.00 34.91 3.86
2 3 2.419324 GCAAGAACTTCTGCCATCTCAG 59.581 50.000 0.00 0.00 35.46 3.35
3 4 2.224597 TGCAAGAACTTCTGCCATCTCA 60.225 45.455 9.40 0.00 0.00 3.27
4 5 2.430465 TGCAAGAACTTCTGCCATCTC 58.570 47.619 9.40 0.00 0.00 2.75
5 6 2.574006 TGCAAGAACTTCTGCCATCT 57.426 45.000 9.40 0.00 0.00 2.90
6 7 2.734492 GCATGCAAGAACTTCTGCCATC 60.734 50.000 14.21 0.00 0.00 3.51
8 9 0.599558 GCATGCAAGAACTTCTGCCA 59.400 50.000 14.21 3.54 0.00 4.92
9 10 0.599558 TGCATGCAAGAACTTCTGCC 59.400 50.000 20.30 0.00 0.00 4.85
10 11 1.402456 CCTGCATGCAAGAACTTCTGC 60.402 52.381 22.88 0.00 0.00 4.26
11 12 2.156917 TCCTGCATGCAAGAACTTCTG 58.843 47.619 22.88 6.32 0.00 3.02
12 13 2.224719 ACTCCTGCATGCAAGAACTTCT 60.225 45.455 22.88 0.00 0.00 2.85
13 14 2.095364 CACTCCTGCATGCAAGAACTTC 60.095 50.000 22.88 0.00 0.00 3.01
14 15 1.884579 CACTCCTGCATGCAAGAACTT 59.115 47.619 22.88 5.42 0.00 2.66
15 16 1.531423 CACTCCTGCATGCAAGAACT 58.469 50.000 22.88 6.10 0.00 3.01
16 17 0.109412 GCACTCCTGCATGCAAGAAC 60.109 55.000 22.88 9.58 43.62 3.01
17 18 0.251033 AGCACTCCTGCATGCAAGAA 60.251 50.000 22.88 8.90 46.97 2.52
18 19 0.958876 CAGCACTCCTGCATGCAAGA 60.959 55.000 22.88 20.14 46.97 3.02
19 20 1.241990 ACAGCACTCCTGCATGCAAG 61.242 55.000 22.88 19.17 46.97 4.01
20 21 0.824595 AACAGCACTCCTGCATGCAA 60.825 50.000 22.88 6.89 46.97 4.08
21 22 1.228337 AACAGCACTCCTGCATGCA 60.228 52.632 21.29 21.29 46.97 3.96
22 23 1.505353 GAACAGCACTCCTGCATGC 59.495 57.895 11.82 11.82 46.97 4.06
23 24 1.792301 CGAACAGCACTCCTGCATG 59.208 57.895 0.00 0.00 46.97 4.06
24 25 2.037136 GCGAACAGCACTCCTGCAT 61.037 57.895 0.00 0.00 46.97 3.96
25 26 2.666190 GCGAACAGCACTCCTGCA 60.666 61.111 0.00 0.00 46.97 4.41
35 36 1.081892 ATGCACAGCTAAGCGAACAG 58.918 50.000 0.00 0.00 0.00 3.16
36 37 1.522668 AATGCACAGCTAAGCGAACA 58.477 45.000 0.00 0.00 0.00 3.18
37 38 3.309682 TGATAATGCACAGCTAAGCGAAC 59.690 43.478 0.00 0.00 0.00 3.95
38 39 3.309682 GTGATAATGCACAGCTAAGCGAA 59.690 43.478 0.00 0.00 38.63 4.70
39 40 2.866156 GTGATAATGCACAGCTAAGCGA 59.134 45.455 0.00 0.00 38.63 4.93
40 41 2.347939 CGTGATAATGCACAGCTAAGCG 60.348 50.000 0.00 0.00 38.69 4.68
41 42 2.609459 ACGTGATAATGCACAGCTAAGC 59.391 45.455 0.00 2.77 38.69 3.09
42 43 4.329801 TGAACGTGATAATGCACAGCTAAG 59.670 41.667 0.00 0.00 38.69 2.18
43 44 4.249661 TGAACGTGATAATGCACAGCTAA 58.750 39.130 0.00 0.00 38.69 3.09
44 45 3.855858 TGAACGTGATAATGCACAGCTA 58.144 40.909 0.00 0.00 38.69 3.32
45 46 2.674852 CTGAACGTGATAATGCACAGCT 59.325 45.455 0.00 0.00 38.69 4.24
46 47 2.672874 TCTGAACGTGATAATGCACAGC 59.327 45.455 0.00 0.00 38.69 4.40
47 48 4.176271 TCTCTGAACGTGATAATGCACAG 58.824 43.478 0.00 0.00 38.69 3.66
48 49 4.176271 CTCTCTGAACGTGATAATGCACA 58.824 43.478 0.00 0.00 38.69 4.57
49 50 3.000724 GCTCTCTGAACGTGATAATGCAC 59.999 47.826 0.00 0.00 35.46 4.57
50 51 3.118992 AGCTCTCTGAACGTGATAATGCA 60.119 43.478 0.00 0.00 0.00 3.96
51 52 3.452474 AGCTCTCTGAACGTGATAATGC 58.548 45.455 0.00 0.00 0.00 3.56
52 53 4.676546 TGAGCTCTCTGAACGTGATAATG 58.323 43.478 16.19 0.00 0.00 1.90
53 54 4.991153 TGAGCTCTCTGAACGTGATAAT 57.009 40.909 16.19 0.00 0.00 1.28
54 55 4.158579 ACATGAGCTCTCTGAACGTGATAA 59.841 41.667 16.19 0.00 0.00 1.75
55 56 3.696548 ACATGAGCTCTCTGAACGTGATA 59.303 43.478 16.19 0.00 0.00 2.15
56 57 2.495270 ACATGAGCTCTCTGAACGTGAT 59.505 45.455 16.19 0.00 0.00 3.06
57 58 1.889170 ACATGAGCTCTCTGAACGTGA 59.111 47.619 16.19 0.00 0.00 4.35
58 59 1.991264 CACATGAGCTCTCTGAACGTG 59.009 52.381 16.19 7.62 0.00 4.49
59 60 1.067283 CCACATGAGCTCTCTGAACGT 60.067 52.381 16.19 0.00 0.00 3.99
60 61 1.203287 TCCACATGAGCTCTCTGAACG 59.797 52.381 16.19 6.92 0.00 3.95
61 62 2.891112 CTCCACATGAGCTCTCTGAAC 58.109 52.381 16.19 0.00 33.47 3.18
71 72 3.455328 CTGTCCAGCTCCACATGAG 57.545 57.895 0.00 0.00 44.47 2.90
82 83 4.463879 CAGGGCGAGGCTGTCCAG 62.464 72.222 9.67 0.00 33.74 3.86
85 86 3.075005 TACCAGGGCGAGGCTGTC 61.075 66.667 0.00 0.00 0.00 3.51
86 87 3.391382 GTACCAGGGCGAGGCTGT 61.391 66.667 0.00 0.00 0.00 4.40
87 88 2.463589 TTTGTACCAGGGCGAGGCTG 62.464 60.000 0.00 0.00 0.00 4.85
88 89 1.774894 TTTTGTACCAGGGCGAGGCT 61.775 55.000 0.00 0.00 0.00 4.58
89 90 1.302993 TTTTGTACCAGGGCGAGGC 60.303 57.895 0.00 0.00 0.00 4.70
90 91 1.305930 GCTTTTGTACCAGGGCGAGG 61.306 60.000 0.00 0.00 0.00 4.63
91 92 0.321653 AGCTTTTGTACCAGGGCGAG 60.322 55.000 0.00 0.00 0.00 5.03
92 93 0.978151 TAGCTTTTGTACCAGGGCGA 59.022 50.000 0.00 0.00 0.00 5.54
93 94 1.816074 TTAGCTTTTGTACCAGGGCG 58.184 50.000 0.00 0.00 0.00 6.13
94 95 2.888414 TGTTTAGCTTTTGTACCAGGGC 59.112 45.455 0.00 0.00 0.00 5.19
95 96 4.825085 TCTTGTTTAGCTTTTGTACCAGGG 59.175 41.667 0.00 0.00 0.00 4.45
96 97 6.381801 CATCTTGTTTAGCTTTTGTACCAGG 58.618 40.000 0.00 0.00 0.00 4.45
97 98 6.206634 TCCATCTTGTTTAGCTTTTGTACCAG 59.793 38.462 0.00 0.00 0.00 4.00
98 99 6.065374 TCCATCTTGTTTAGCTTTTGTACCA 58.935 36.000 0.00 0.00 0.00 3.25
99 100 6.430000 TCTCCATCTTGTTTAGCTTTTGTACC 59.570 38.462 0.00 0.00 0.00 3.34
100 101 7.361286 CCTCTCCATCTTGTTTAGCTTTTGTAC 60.361 40.741 0.00 0.00 0.00 2.90
101 102 6.655003 CCTCTCCATCTTGTTTAGCTTTTGTA 59.345 38.462 0.00 0.00 0.00 2.41
102 103 5.474876 CCTCTCCATCTTGTTTAGCTTTTGT 59.525 40.000 0.00 0.00 0.00 2.83
103 104 5.105997 CCCTCTCCATCTTGTTTAGCTTTTG 60.106 44.000 0.00 0.00 0.00 2.44
104 105 5.012893 CCCTCTCCATCTTGTTTAGCTTTT 58.987 41.667 0.00 0.00 0.00 2.27
105 106 4.289672 TCCCTCTCCATCTTGTTTAGCTTT 59.710 41.667 0.00 0.00 0.00 3.51
106 107 3.846588 TCCCTCTCCATCTTGTTTAGCTT 59.153 43.478 0.00 0.00 0.00 3.74
107 108 3.198853 GTCCCTCTCCATCTTGTTTAGCT 59.801 47.826 0.00 0.00 0.00 3.32
108 109 3.536570 GTCCCTCTCCATCTTGTTTAGC 58.463 50.000 0.00 0.00 0.00 3.09
109 110 3.777522 AGGTCCCTCTCCATCTTGTTTAG 59.222 47.826 0.00 0.00 0.00 1.85
110 111 3.519510 CAGGTCCCTCTCCATCTTGTTTA 59.480 47.826 0.00 0.00 0.00 2.01
111 112 2.307098 CAGGTCCCTCTCCATCTTGTTT 59.693 50.000 0.00 0.00 0.00 2.83
112 113 1.912043 CAGGTCCCTCTCCATCTTGTT 59.088 52.381 0.00 0.00 0.00 2.83
113 114 1.203364 ACAGGTCCCTCTCCATCTTGT 60.203 52.381 0.00 0.00 0.00 3.16
114 115 1.484240 GACAGGTCCCTCTCCATCTTG 59.516 57.143 0.00 0.00 0.00 3.02
115 116 1.079490 TGACAGGTCCCTCTCCATCTT 59.921 52.381 0.00 0.00 0.00 2.40
116 117 0.712979 TGACAGGTCCCTCTCCATCT 59.287 55.000 0.00 0.00 0.00 2.90
117 118 1.118838 CTGACAGGTCCCTCTCCATC 58.881 60.000 0.00 0.00 0.00 3.51
118 119 0.980231 GCTGACAGGTCCCTCTCCAT 60.980 60.000 4.26 0.00 0.00 3.41
119 120 1.610673 GCTGACAGGTCCCTCTCCA 60.611 63.158 4.26 0.00 0.00 3.86
120 121 1.305718 AGCTGACAGGTCCCTCTCC 60.306 63.158 0.07 0.00 0.00 3.71
121 122 0.902516 ACAGCTGACAGGTCCCTCTC 60.903 60.000 23.35 0.00 0.00 3.20
122 123 0.902516 GACAGCTGACAGGTCCCTCT 60.903 60.000 23.35 0.00 0.00 3.69
123 124 1.594310 GACAGCTGACAGGTCCCTC 59.406 63.158 23.35 0.00 0.00 4.30
124 125 2.279069 CGACAGCTGACAGGTCCCT 61.279 63.158 23.35 0.00 0.00 4.20
125 126 2.262915 CGACAGCTGACAGGTCCC 59.737 66.667 23.35 0.00 0.00 4.46
126 127 2.262915 CCGACAGCTGACAGGTCC 59.737 66.667 23.35 0.00 0.00 4.46
127 128 2.433318 GCCGACAGCTGACAGGTC 60.433 66.667 23.35 5.90 38.99 3.85
128 129 4.008933 GGCCGACAGCTGACAGGT 62.009 66.667 23.35 0.07 43.05 4.00
129 130 4.767255 GGGCCGACAGCTGACAGG 62.767 72.222 23.35 19.97 43.05 4.00
130 131 3.320879 ATGGGCCGACAGCTGACAG 62.321 63.158 23.35 8.04 43.05 3.51
131 132 3.321648 ATGGGCCGACAGCTGACA 61.322 61.111 23.35 9.34 43.05 3.58
132 133 2.821366 CATGGGCCGACAGCTGAC 60.821 66.667 23.35 14.26 43.05 3.51
133 134 4.100084 CCATGGGCCGACAGCTGA 62.100 66.667 23.35 0.00 43.05 4.26
142 143 4.828296 CTCCTGCACCCATGGGCC 62.828 72.222 31.73 21.82 39.32 5.80
143 144 2.972892 GATCTCCTGCACCCATGGGC 62.973 65.000 31.73 18.30 39.32 5.36
144 145 1.150081 GATCTCCTGCACCCATGGG 59.850 63.158 30.23 30.23 42.03 4.00
145 146 0.256752 TTGATCTCCTGCACCCATGG 59.743 55.000 4.14 4.14 0.00 3.66
146 147 1.211212 TCTTGATCTCCTGCACCCATG 59.789 52.381 0.00 0.00 0.00 3.66
147 148 1.211457 GTCTTGATCTCCTGCACCCAT 59.789 52.381 0.00 0.00 0.00 4.00
148 149 0.615331 GTCTTGATCTCCTGCACCCA 59.385 55.000 0.00 0.00 0.00 4.51
149 150 0.460987 CGTCTTGATCTCCTGCACCC 60.461 60.000 0.00 0.00 0.00 4.61
150 151 0.532573 TCGTCTTGATCTCCTGCACC 59.467 55.000 0.00 0.00 0.00 5.01
151 152 2.200067 CATCGTCTTGATCTCCTGCAC 58.800 52.381 0.00 0.00 34.13 4.57
152 153 1.472201 GCATCGTCTTGATCTCCTGCA 60.472 52.381 0.00 0.00 34.13 4.41
153 154 1.202510 AGCATCGTCTTGATCTCCTGC 60.203 52.381 0.00 0.00 34.13 4.85
154 155 2.741612 GAGCATCGTCTTGATCTCCTG 58.258 52.381 0.00 0.00 34.13 3.86
168 169 0.605589 CCTCCATAGACCCGAGCATC 59.394 60.000 0.00 0.00 0.00 3.91
169 170 0.188587 TCCTCCATAGACCCGAGCAT 59.811 55.000 0.00 0.00 0.00 3.79
170 171 0.468214 CTCCTCCATAGACCCGAGCA 60.468 60.000 0.00 0.00 0.00 4.26
171 172 1.182385 CCTCCTCCATAGACCCGAGC 61.182 65.000 0.00 0.00 0.00 5.03
172 173 1.182385 GCCTCCTCCATAGACCCGAG 61.182 65.000 0.00 0.00 0.00 4.63
173 174 1.152525 GCCTCCTCCATAGACCCGA 60.153 63.158 0.00 0.00 0.00 5.14
174 175 2.210711 GGCCTCCTCCATAGACCCG 61.211 68.421 0.00 0.00 0.00 5.28
175 176 0.694444 TTGGCCTCCTCCATAGACCC 60.694 60.000 3.32 0.00 35.77 4.46
176 177 0.761802 CTTGGCCTCCTCCATAGACC 59.238 60.000 3.32 0.00 35.77 3.85
177 178 0.761802 CCTTGGCCTCCTCCATAGAC 59.238 60.000 3.32 0.00 35.77 2.59
178 179 0.343372 ACCTTGGCCTCCTCCATAGA 59.657 55.000 3.32 0.00 35.77 1.98
179 180 0.761802 GACCTTGGCCTCCTCCATAG 59.238 60.000 3.32 0.00 35.77 2.23
180 181 0.044092 TGACCTTGGCCTCCTCCATA 59.956 55.000 3.32 0.00 35.77 2.74
181 182 1.229951 TGACCTTGGCCTCCTCCAT 60.230 57.895 3.32 0.00 35.77 3.41
182 183 2.206900 TGACCTTGGCCTCCTCCA 59.793 61.111 3.32 0.00 0.00 3.86
183 184 1.566298 ATGTGACCTTGGCCTCCTCC 61.566 60.000 3.32 0.00 0.00 4.30
184 185 0.393537 CATGTGACCTTGGCCTCCTC 60.394 60.000 3.32 0.00 0.00 3.71
185 186 1.687612 CATGTGACCTTGGCCTCCT 59.312 57.895 3.32 0.00 0.00 3.69
186 187 1.379044 CCATGTGACCTTGGCCTCC 60.379 63.158 3.32 0.00 0.00 4.30
187 188 0.257039 ATCCATGTGACCTTGGCCTC 59.743 55.000 3.32 0.00 36.17 4.70
188 189 0.706433 AATCCATGTGACCTTGGCCT 59.294 50.000 3.32 0.00 36.17 5.19
189 190 1.106285 GAATCCATGTGACCTTGGCC 58.894 55.000 0.00 0.00 36.17 5.36
190 191 0.734889 CGAATCCATGTGACCTTGGC 59.265 55.000 0.00 0.00 36.17 4.52
191 192 0.734889 GCGAATCCATGTGACCTTGG 59.265 55.000 0.00 0.00 37.26 3.61
192 193 0.734889 GGCGAATCCATGTGACCTTG 59.265 55.000 0.00 0.00 34.01 3.61
193 194 0.744414 CGGCGAATCCATGTGACCTT 60.744 55.000 0.00 0.00 34.01 3.50
194 195 1.153369 CGGCGAATCCATGTGACCT 60.153 57.895 0.00 0.00 34.01 3.85
195 196 0.532862 ATCGGCGAATCCATGTGACC 60.533 55.000 15.93 0.00 34.01 4.02
196 197 0.861837 GATCGGCGAATCCATGTGAC 59.138 55.000 15.93 0.00 34.01 3.67
197 198 0.597377 CGATCGGCGAATCCATGTGA 60.597 55.000 15.93 0.00 44.57 3.58
198 199 1.560004 CCGATCGGCGAATCCATGTG 61.560 60.000 23.37 0.00 44.57 3.21
199 200 1.300931 CCGATCGGCGAATCCATGT 60.301 57.895 23.37 0.00 44.57 3.21
200 201 2.029288 CCCGATCGGCGAATCCATG 61.029 63.158 29.12 7.77 44.57 3.66
201 202 2.343758 CCCGATCGGCGAATCCAT 59.656 61.111 29.12 0.00 44.57 3.41
202 203 3.923864 CCCCGATCGGCGAATCCA 61.924 66.667 29.12 0.00 44.57 3.41
203 204 2.450479 ATTCCCCGATCGGCGAATCC 62.450 60.000 31.88 5.40 44.57 3.01
204 205 1.004918 ATTCCCCGATCGGCGAATC 60.005 57.895 31.88 11.27 44.57 2.52
205 206 1.301716 CATTCCCCGATCGGCGAAT 60.302 57.895 31.88 31.88 44.57 3.34
206 207 1.393487 TACATTCCCCGATCGGCGAA 61.393 55.000 30.58 30.58 44.57 4.70
207 208 1.802337 CTACATTCCCCGATCGGCGA 61.802 60.000 29.12 23.22 44.57 5.54
208 209 1.372997 CTACATTCCCCGATCGGCG 60.373 63.158 29.12 21.04 40.47 6.46
209 210 1.668151 GCTACATTCCCCGATCGGC 60.668 63.158 29.12 10.03 0.00 5.54
210 211 1.004918 GGCTACATTCCCCGATCGG 60.005 63.158 27.65 27.65 0.00 4.18
211 212 1.372997 CGGCTACATTCCCCGATCG 60.373 63.158 8.51 8.51 44.55 3.69
212 213 1.668151 GCGGCTACATTCCCCGATC 60.668 63.158 2.08 0.00 44.55 3.69
213 214 2.100879 GAGCGGCTACATTCCCCGAT 62.101 60.000 0.60 0.00 44.19 4.18
214 215 2.762459 AGCGGCTACATTCCCCGA 60.762 61.111 0.00 0.00 44.55 5.14
215 216 2.280186 GAGCGGCTACATTCCCCG 60.280 66.667 0.60 0.00 44.58 5.73
216 217 0.685097 TATGAGCGGCTACATTCCCC 59.315 55.000 16.29 0.00 0.00 4.81
217 218 2.543777 TTATGAGCGGCTACATTCCC 57.456 50.000 16.29 0.00 0.00 3.97
218 219 3.929610 GAGATTATGAGCGGCTACATTCC 59.070 47.826 16.29 8.90 0.00 3.01
219 220 3.610242 CGAGATTATGAGCGGCTACATTC 59.390 47.826 16.29 10.90 0.00 2.67
220 221 3.579709 CGAGATTATGAGCGGCTACATT 58.420 45.455 16.29 4.16 0.00 2.71
221 222 2.672478 GCGAGATTATGAGCGGCTACAT 60.672 50.000 0.60 10.93 0.00 2.29
222 223 1.335964 GCGAGATTATGAGCGGCTACA 60.336 52.381 0.60 3.37 0.00 2.74
223 224 1.068194 AGCGAGATTATGAGCGGCTAC 60.068 52.381 0.60 0.00 34.34 3.58
224 225 1.200252 GAGCGAGATTATGAGCGGCTA 59.800 52.381 0.60 0.00 34.34 3.93
225 226 0.038709 GAGCGAGATTATGAGCGGCT 60.039 55.000 0.00 0.00 34.34 5.52
226 227 1.340657 CGAGCGAGATTATGAGCGGC 61.341 60.000 0.00 0.00 34.34 6.53
227 228 0.039978 ACGAGCGAGATTATGAGCGG 60.040 55.000 0.00 0.00 34.34 5.52
228 229 1.048494 CACGAGCGAGATTATGAGCG 58.952 55.000 0.00 0.00 34.34 5.03
229 230 2.126914 ACACGAGCGAGATTATGAGC 57.873 50.000 0.00 0.00 0.00 4.26
230 231 3.365465 CCCTACACGAGCGAGATTATGAG 60.365 52.174 0.00 0.00 0.00 2.90
231 232 2.552743 CCCTACACGAGCGAGATTATGA 59.447 50.000 0.00 0.00 0.00 2.15
232 233 2.351835 CCCCTACACGAGCGAGATTATG 60.352 54.545 0.00 0.00 0.00 1.90
233 234 1.887198 CCCCTACACGAGCGAGATTAT 59.113 52.381 0.00 0.00 0.00 1.28
234 235 1.315690 CCCCTACACGAGCGAGATTA 58.684 55.000 0.00 0.00 0.00 1.75
235 236 0.683504 ACCCCTACACGAGCGAGATT 60.684 55.000 0.00 0.00 0.00 2.40
236 237 0.182061 TACCCCTACACGAGCGAGAT 59.818 55.000 0.00 0.00 0.00 2.75
237 238 0.463295 CTACCCCTACACGAGCGAGA 60.463 60.000 0.00 0.00 0.00 4.04
238 239 1.445716 CCTACCCCTACACGAGCGAG 61.446 65.000 0.00 0.00 0.00 5.03
239 240 1.452651 CCTACCCCTACACGAGCGA 60.453 63.158 0.00 0.00 0.00 4.93
240 241 1.445716 CTCCTACCCCTACACGAGCG 61.446 65.000 0.00 0.00 0.00 5.03
241 242 0.106819 TCTCCTACCCCTACACGAGC 60.107 60.000 0.00 0.00 0.00 5.03
242 243 1.489649 TCTCTCCTACCCCTACACGAG 59.510 57.143 0.00 0.00 0.00 4.18
243 244 1.588239 TCTCTCCTACCCCTACACGA 58.412 55.000 0.00 0.00 0.00 4.35
244 245 2.022934 GTTCTCTCCTACCCCTACACG 58.977 57.143 0.00 0.00 0.00 4.49
245 246 2.386779 GGTTCTCTCCTACCCCTACAC 58.613 57.143 0.00 0.00 0.00 2.90
246 247 1.064166 CGGTTCTCTCCTACCCCTACA 60.064 57.143 0.00 0.00 0.00 2.74
247 248 1.064091 ACGGTTCTCTCCTACCCCTAC 60.064 57.143 0.00 0.00 0.00 3.18
248 249 1.302907 ACGGTTCTCTCCTACCCCTA 58.697 55.000 0.00 0.00 0.00 3.53
249 250 0.412640 AACGGTTCTCTCCTACCCCT 59.587 55.000 0.00 0.00 0.00 4.79
250 251 0.822811 GAACGGTTCTCTCCTACCCC 59.177 60.000 13.49 0.00 0.00 4.95
251 252 0.455005 CGAACGGTTCTCTCCTACCC 59.545 60.000 17.94 0.00 0.00 3.69
252 253 0.455005 CCGAACGGTTCTCTCCTACC 59.545 60.000 17.94 0.00 0.00 3.18
253 254 1.401199 CTCCGAACGGTTCTCTCCTAC 59.599 57.143 17.94 0.00 36.47 3.18
254 255 1.747709 CTCCGAACGGTTCTCTCCTA 58.252 55.000 17.94 0.00 36.47 2.94
255 256 1.596895 GCTCCGAACGGTTCTCTCCT 61.597 60.000 17.94 0.00 36.47 3.69
256 257 1.153804 GCTCCGAACGGTTCTCTCC 60.154 63.158 17.94 1.80 36.47 3.71
257 258 1.093159 TAGCTCCGAACGGTTCTCTC 58.907 55.000 17.94 5.49 36.47 3.20
258 259 1.405821 CATAGCTCCGAACGGTTCTCT 59.594 52.381 17.94 11.56 36.47 3.10
259 260 1.536284 CCATAGCTCCGAACGGTTCTC 60.536 57.143 17.94 5.50 36.47 2.87
260 261 0.460311 CCATAGCTCCGAACGGTTCT 59.540 55.000 17.94 12.54 36.47 3.01
261 262 0.529992 CCCATAGCTCCGAACGGTTC 60.530 60.000 10.83 10.83 36.47 3.62
262 263 1.262640 ACCCATAGCTCCGAACGGTT 61.263 55.000 12.93 0.00 36.47 4.44
263 264 1.684734 ACCCATAGCTCCGAACGGT 60.685 57.895 12.93 0.00 36.47 4.83
264 265 1.227263 CACCCATAGCTCCGAACGG 60.227 63.158 6.94 6.94 0.00 4.44
265 266 1.227263 CCACCCATAGCTCCGAACG 60.227 63.158 0.00 0.00 0.00 3.95
266 267 1.146263 CCCACCCATAGCTCCGAAC 59.854 63.158 0.00 0.00 0.00 3.95
267 268 0.399949 ATCCCACCCATAGCTCCGAA 60.400 55.000 0.00 0.00 0.00 4.30
268 269 0.832135 GATCCCACCCATAGCTCCGA 60.832 60.000 0.00 0.00 0.00 4.55
269 270 1.121407 TGATCCCACCCATAGCTCCG 61.121 60.000 0.00 0.00 0.00 4.63
270 271 0.398318 GTGATCCCACCCATAGCTCC 59.602 60.000 0.00 0.00 37.33 4.70
283 284 3.953542 AATAAAGTCTGGGGGTGATCC 57.046 47.619 0.00 0.00 0.00 3.36
284 285 4.142160 GCAAAATAAAGTCTGGGGGTGATC 60.142 45.833 0.00 0.00 0.00 2.92
285 286 3.769300 GCAAAATAAAGTCTGGGGGTGAT 59.231 43.478 0.00 0.00 0.00 3.06
286 287 3.161866 GCAAAATAAAGTCTGGGGGTGA 58.838 45.455 0.00 0.00 0.00 4.02
287 288 2.896685 TGCAAAATAAAGTCTGGGGGTG 59.103 45.455 0.00 0.00 0.00 4.61
288 289 3.252554 TGCAAAATAAAGTCTGGGGGT 57.747 42.857 0.00 0.00 0.00 4.95
289 290 3.515104 ACATGCAAAATAAAGTCTGGGGG 59.485 43.478 0.00 0.00 0.00 5.40
290 291 4.806640 ACATGCAAAATAAAGTCTGGGG 57.193 40.909 0.00 0.00 0.00 4.96
291 292 8.776376 AAATTACATGCAAAATAAAGTCTGGG 57.224 30.769 0.00 0.00 0.00 4.45
292 293 9.421806 TGAAATTACATGCAAAATAAAGTCTGG 57.578 29.630 0.00 0.00 0.00 3.86
296 297 9.128107 CGTCTGAAATTACATGCAAAATAAAGT 57.872 29.630 0.00 0.00 0.00 2.66
297 298 9.340695 TCGTCTGAAATTACATGCAAAATAAAG 57.659 29.630 0.00 0.00 0.00 1.85
298 299 9.123709 GTCGTCTGAAATTACATGCAAAATAAA 57.876 29.630 0.00 0.00 0.00 1.40
299 300 8.293157 TGTCGTCTGAAATTACATGCAAAATAA 58.707 29.630 0.00 0.00 0.00 1.40
300 301 7.811653 TGTCGTCTGAAATTACATGCAAAATA 58.188 30.769 0.00 0.00 0.00 1.40
301 302 6.676950 TGTCGTCTGAAATTACATGCAAAAT 58.323 32.000 0.00 0.00 0.00 1.82
302 303 6.066054 TGTCGTCTGAAATTACATGCAAAA 57.934 33.333 0.00 0.00 0.00 2.44
303 304 5.681337 TGTCGTCTGAAATTACATGCAAA 57.319 34.783 0.00 0.00 0.00 3.68
304 305 5.878332 ATGTCGTCTGAAATTACATGCAA 57.122 34.783 0.00 0.00 29.93 4.08
305 306 5.163764 GGAATGTCGTCTGAAATTACATGCA 60.164 40.000 0.00 0.00 33.39 3.96
306 307 5.065218 AGGAATGTCGTCTGAAATTACATGC 59.935 40.000 0.00 0.00 35.37 4.06
307 308 6.668541 AGGAATGTCGTCTGAAATTACATG 57.331 37.500 0.00 0.00 35.37 3.21
308 309 6.480320 GCTAGGAATGTCGTCTGAAATTACAT 59.520 38.462 0.00 0.00 35.37 2.29
309 310 5.810587 GCTAGGAATGTCGTCTGAAATTACA 59.189 40.000 0.00 0.00 35.37 2.41
310 311 6.043411 AGCTAGGAATGTCGTCTGAAATTAC 58.957 40.000 0.00 0.00 31.99 1.89
311 312 6.222038 AGCTAGGAATGTCGTCTGAAATTA 57.778 37.500 0.00 0.00 31.99 1.40
312 313 5.091261 AGCTAGGAATGTCGTCTGAAATT 57.909 39.130 0.00 0.00 34.63 1.82
313 314 4.744795 AGCTAGGAATGTCGTCTGAAAT 57.255 40.909 0.00 0.00 0.00 2.17
314 315 4.495422 GAAGCTAGGAATGTCGTCTGAAA 58.505 43.478 0.00 0.00 0.00 2.69
315 316 3.427638 CGAAGCTAGGAATGTCGTCTGAA 60.428 47.826 0.00 0.00 0.00 3.02
316 317 2.097629 CGAAGCTAGGAATGTCGTCTGA 59.902 50.000 0.00 0.00 0.00 3.27
317 318 2.455032 CGAAGCTAGGAATGTCGTCTG 58.545 52.381 0.00 0.00 0.00 3.51
318 319 2.853731 CGAAGCTAGGAATGTCGTCT 57.146 50.000 0.00 0.00 0.00 4.18
338 339 5.229260 GGAAAATCGTGCCGCTTTATTTAAG 59.771 40.000 0.00 0.00 36.90 1.85
339 340 5.096849 GGAAAATCGTGCCGCTTTATTTAA 58.903 37.500 0.00 0.00 0.00 1.52
340 341 4.439016 GGGAAAATCGTGCCGCTTTATTTA 60.439 41.667 0.00 0.00 0.00 1.40
341 342 3.507786 GGAAAATCGTGCCGCTTTATTT 58.492 40.909 0.00 0.00 0.00 1.40
342 343 2.159296 GGGAAAATCGTGCCGCTTTATT 60.159 45.455 0.00 0.00 0.00 1.40
343 344 1.404035 GGGAAAATCGTGCCGCTTTAT 59.596 47.619 0.00 0.00 0.00 1.40
344 345 0.806241 GGGAAAATCGTGCCGCTTTA 59.194 50.000 0.00 0.00 0.00 1.85
345 346 1.584495 GGGAAAATCGTGCCGCTTT 59.416 52.632 0.00 0.00 0.00 3.51
346 347 2.340328 GGGGAAAATCGTGCCGCTT 61.340 57.895 0.00 0.00 0.00 4.68
347 348 2.750237 GGGGAAAATCGTGCCGCT 60.750 61.111 0.00 0.00 0.00 5.52
348 349 2.750237 AGGGGAAAATCGTGCCGC 60.750 61.111 0.00 0.00 35.10 6.53
349 350 0.958382 TTGAGGGGAAAATCGTGCCG 60.958 55.000 0.00 0.00 0.00 5.69
350 351 1.253100 TTTGAGGGGAAAATCGTGCC 58.747 50.000 0.00 0.00 0.00 5.01
351 352 3.378911 TTTTTGAGGGGAAAATCGTGC 57.621 42.857 0.00 0.00 0.00 5.34
383 384 9.912634 TGCGAGAAAAATAAATGATCTTTTCTT 57.087 25.926 15.33 8.51 44.24 2.52
384 385 9.912634 TTGCGAGAAAAATAAATGATCTTTTCT 57.087 25.926 14.52 14.52 45.92 2.52
412 413 9.649167 CCTTTTCTGAGCAAATAAATGATCTTT 57.351 29.630 0.00 0.00 36.69 2.52
413 414 9.028284 TCCTTTTCTGAGCAAATAAATGATCTT 57.972 29.630 0.00 0.00 36.69 2.40
414 415 8.585471 TCCTTTTCTGAGCAAATAAATGATCT 57.415 30.769 0.00 0.00 36.69 2.75
415 416 9.643693 TTTCCTTTTCTGAGCAAATAAATGATC 57.356 29.630 0.00 0.00 36.30 2.92
416 417 9.428097 GTTTCCTTTTCTGAGCAAATAAATGAT 57.572 29.630 0.00 0.00 0.00 2.45
417 418 7.872483 GGTTTCCTTTTCTGAGCAAATAAATGA 59.128 33.333 0.00 0.00 0.00 2.57
418 419 7.118245 GGGTTTCCTTTTCTGAGCAAATAAATG 59.882 37.037 0.00 0.00 0.00 2.32
419 420 7.016563 AGGGTTTCCTTTTCTGAGCAAATAAAT 59.983 33.333 0.00 0.00 41.56 1.40
420 421 6.326323 AGGGTTTCCTTTTCTGAGCAAATAAA 59.674 34.615 0.00 0.00 41.56 1.40
421 422 5.838521 AGGGTTTCCTTTTCTGAGCAAATAA 59.161 36.000 0.00 0.00 41.56 1.40
422 423 5.243730 CAGGGTTTCCTTTTCTGAGCAAATA 59.756 40.000 0.00 0.00 42.67 1.40
423 424 4.039609 CAGGGTTTCCTTTTCTGAGCAAAT 59.960 41.667 0.00 0.00 42.67 2.32
424 425 3.384467 CAGGGTTTCCTTTTCTGAGCAAA 59.616 43.478 0.00 0.00 42.67 3.68
425 426 2.958355 CAGGGTTTCCTTTTCTGAGCAA 59.042 45.455 0.00 0.00 42.67 3.91
426 427 2.586425 CAGGGTTTCCTTTTCTGAGCA 58.414 47.619 0.00 0.00 42.67 4.26
427 428 1.270826 GCAGGGTTTCCTTTTCTGAGC 59.729 52.381 0.00 0.00 42.67 4.26
428 429 2.868899 AGCAGGGTTTCCTTTTCTGAG 58.131 47.619 0.00 0.00 42.67 3.35
429 430 4.447138 TTAGCAGGGTTTCCTTTTCTGA 57.553 40.909 0.00 0.00 42.67 3.27
430 431 4.158579 GGATTAGCAGGGTTTCCTTTTCTG 59.841 45.833 0.00 0.00 42.67 3.02
431 432 4.044698 AGGATTAGCAGGGTTTCCTTTTCT 59.955 41.667 0.00 0.00 42.67 2.52
432 433 4.158579 CAGGATTAGCAGGGTTTCCTTTTC 59.841 45.833 0.00 0.00 42.67 2.29
433 434 4.089361 CAGGATTAGCAGGGTTTCCTTTT 58.911 43.478 0.00 0.00 42.67 2.27
434 435 3.564352 CCAGGATTAGCAGGGTTTCCTTT 60.564 47.826 0.00 0.00 42.67 3.11
435 436 2.024941 CCAGGATTAGCAGGGTTTCCTT 60.025 50.000 0.00 0.00 42.67 3.36
436 437 1.566231 CCAGGATTAGCAGGGTTTCCT 59.434 52.381 0.00 0.00 46.26 3.36
437 438 1.285078 ACCAGGATTAGCAGGGTTTCC 59.715 52.381 0.00 0.00 0.00 3.13
438 439 2.808906 ACCAGGATTAGCAGGGTTTC 57.191 50.000 0.00 0.00 0.00 2.78
439 440 2.092375 GCTACCAGGATTAGCAGGGTTT 60.092 50.000 4.50 0.00 41.48 3.27
440 441 1.490910 GCTACCAGGATTAGCAGGGTT 59.509 52.381 4.50 0.00 41.48 4.11
441 442 1.132500 GCTACCAGGATTAGCAGGGT 58.868 55.000 4.50 0.00 41.48 4.34
442 443 1.428869 AGCTACCAGGATTAGCAGGG 58.571 55.000 10.90 0.00 43.85 4.45
443 444 3.567478 AAAGCTACCAGGATTAGCAGG 57.433 47.619 10.90 0.00 43.85 4.85
444 445 4.096984 CCAAAAAGCTACCAGGATTAGCAG 59.903 45.833 10.90 0.00 43.85 4.24
445 446 4.016444 CCAAAAAGCTACCAGGATTAGCA 58.984 43.478 10.90 0.00 43.85 3.49
446 447 4.270008 TCCAAAAAGCTACCAGGATTAGC 58.730 43.478 0.00 0.00 42.06 3.09
447 448 5.745227 TCTCCAAAAAGCTACCAGGATTAG 58.255 41.667 0.00 0.00 0.00 1.73
448 449 5.772393 TCTCCAAAAAGCTACCAGGATTA 57.228 39.130 0.00 0.00 0.00 1.75
449 450 4.657814 TCTCCAAAAAGCTACCAGGATT 57.342 40.909 0.00 0.00 0.00 3.01
450 451 4.870021 ATCTCCAAAAAGCTACCAGGAT 57.130 40.909 0.00 0.00 0.00 3.24
451 452 4.657814 AATCTCCAAAAAGCTACCAGGA 57.342 40.909 0.00 0.00 0.00 3.86
452 453 4.766891 TGAAATCTCCAAAAAGCTACCAGG 59.233 41.667 0.00 0.00 0.00 4.45
453 454 5.707298 TCTGAAATCTCCAAAAAGCTACCAG 59.293 40.000 0.00 0.00 0.00 4.00
454 455 5.630121 TCTGAAATCTCCAAAAAGCTACCA 58.370 37.500 0.00 0.00 0.00 3.25
455 456 6.405176 CCATCTGAAATCTCCAAAAAGCTACC 60.405 42.308 0.00 0.00 0.00 3.18
456 457 6.375455 TCCATCTGAAATCTCCAAAAAGCTAC 59.625 38.462 0.00 0.00 0.00 3.58
457 458 6.484288 TCCATCTGAAATCTCCAAAAAGCTA 58.516 36.000 0.00 0.00 0.00 3.32
458 459 5.327732 TCCATCTGAAATCTCCAAAAAGCT 58.672 37.500 0.00 0.00 0.00 3.74
459 460 5.649782 TCCATCTGAAATCTCCAAAAAGC 57.350 39.130 0.00 0.00 0.00 3.51
460 461 7.400599 TCATCCATCTGAAATCTCCAAAAAG 57.599 36.000 0.00 0.00 0.00 2.27
461 462 7.779754 TTCATCCATCTGAAATCTCCAAAAA 57.220 32.000 0.00 0.00 32.35 1.94
462 463 7.779754 TTTCATCCATCTGAAATCTCCAAAA 57.220 32.000 0.00 0.00 39.55 2.44
463 464 7.779754 TTTTCATCCATCTGAAATCTCCAAA 57.220 32.000 0.56 0.00 42.87 3.28
464 465 7.616542 TGATTTTCATCCATCTGAAATCTCCAA 59.383 33.333 0.00 0.00 42.87 3.53
465 466 7.120716 TGATTTTCATCCATCTGAAATCTCCA 58.879 34.615 0.00 0.00 42.87 3.86
466 467 7.255520 CCTGATTTTCATCCATCTGAAATCTCC 60.256 40.741 0.00 0.00 42.87 3.71
467 468 7.501559 TCCTGATTTTCATCCATCTGAAATCTC 59.498 37.037 0.00 2.71 42.87 2.75
468 469 7.351952 TCCTGATTTTCATCCATCTGAAATCT 58.648 34.615 0.00 0.00 42.87 2.40
469 470 7.578310 TCCTGATTTTCATCCATCTGAAATC 57.422 36.000 0.56 0.00 42.87 2.17
470 471 7.069578 CCTTCCTGATTTTCATCCATCTGAAAT 59.930 37.037 0.56 0.00 42.87 2.17
486 487 0.249911 GGTATCGCGCCTTCCTGATT 60.250 55.000 0.00 0.00 0.00 2.57
502 503 1.341778 GGAGGAGTCGGGAGAAAGGTA 60.342 57.143 0.00 0.00 42.89 3.08
516 517 3.526931 TTACAGAAGAATGCGGAGGAG 57.473 47.619 0.00 0.00 0.00 3.69
531 532 2.853705 TCAAAAGACGGGGGTTTACAG 58.146 47.619 0.00 0.00 0.00 2.74
532 533 3.414269 GATCAAAAGACGGGGGTTTACA 58.586 45.455 0.00 0.00 0.00 2.41
727 740 1.885388 TGGTGGTGCAACGAGTTCG 60.885 57.895 0.00 0.00 46.33 3.95
814 832 1.512926 GTTTCTGCGAGGTGTCACAT 58.487 50.000 5.12 0.00 0.00 3.21
866 884 4.671508 CGTCTCTATATAGTGAGCTGCAGC 60.672 50.000 31.53 31.53 42.49 5.25
867 885 4.671508 GCGTCTCTATATAGTGAGCTGCAG 60.672 50.000 10.11 10.11 33.53 4.41
868 886 3.189495 GCGTCTCTATATAGTGAGCTGCA 59.811 47.826 13.50 0.00 33.53 4.41
869 887 3.726486 CGCGTCTCTATATAGTGAGCTGC 60.726 52.174 13.50 15.16 0.00 5.25
870 888 3.181515 CCGCGTCTCTATATAGTGAGCTG 60.182 52.174 13.50 11.54 0.00 4.24
871 889 3.004171 CCGCGTCTCTATATAGTGAGCT 58.996 50.000 13.50 0.00 0.00 4.09
872 890 2.476519 GCCGCGTCTCTATATAGTGAGC 60.477 54.545 13.50 15.82 0.00 4.26
922 940 2.701423 TCTCTAGGCTCGAGCTTCTCTA 59.299 50.000 34.46 24.62 41.70 2.43
927 945 2.944129 AGATTCTCTAGGCTCGAGCTT 58.056 47.619 34.46 30.35 41.70 3.74
929 947 2.161609 GCTAGATTCTCTAGGCTCGAGC 59.838 54.545 29.38 29.38 45.03 5.03
933 951 4.589908 AGCTAGCTAGATTCTCTAGGCTC 58.410 47.826 25.15 1.59 45.03 4.70
934 952 4.042809 TGAGCTAGCTAGATTCTCTAGGCT 59.957 45.833 25.15 10.61 45.03 4.58
935 953 4.331968 TGAGCTAGCTAGATTCTCTAGGC 58.668 47.826 25.15 5.56 45.03 3.93
938 958 5.380900 TGCTTGAGCTAGCTAGATTCTCTA 58.619 41.667 25.15 15.64 41.76 2.43
970 993 2.925162 CTTCGCCCCGGAGCTTAAGG 62.925 65.000 6.33 0.00 0.00 2.69
1089 1116 2.074576 CAGATGATGACGATGATGGCC 58.925 52.381 0.00 0.00 0.00 5.36
1136 1163 4.477975 CGTGGTCGACGGAGAGGC 62.478 72.222 9.92 0.00 44.85 4.70
1621 1690 1.928503 CCAAACACACAAGCAAAGCAG 59.071 47.619 0.00 0.00 0.00 4.24
1627 1701 2.016318 CTCTGACCAAACACACAAGCA 58.984 47.619 0.00 0.00 0.00 3.91
1628 1702 1.334869 CCTCTGACCAAACACACAAGC 59.665 52.381 0.00 0.00 0.00 4.01
1629 1703 2.917933 TCCTCTGACCAAACACACAAG 58.082 47.619 0.00 0.00 0.00 3.16
1631 1705 3.476552 GAATCCTCTGACCAAACACACA 58.523 45.455 0.00 0.00 0.00 3.72
1778 1853 8.915057 TCCATGAAGAATTTGGCATTTAAAAA 57.085 26.923 0.00 0.00 0.00 1.94
1779 1854 8.915057 TTCCATGAAGAATTTGGCATTTAAAA 57.085 26.923 0.00 0.00 0.00 1.52
1785 1860 8.102047 TGTAATTTTCCATGAAGAATTTGGCAT 58.898 29.630 0.00 0.00 0.00 4.40
1798 1873 7.630242 AGTCATACACCTGTAATTTTCCATG 57.370 36.000 0.00 0.00 33.76 3.66
1920 1996 3.714798 TGACTTCCAGTGGACTAAAGGTT 59.285 43.478 12.69 0.00 0.00 3.50
1929 2005 2.030027 AGGTGATGACTTCCAGTGGA 57.970 50.000 8.12 8.12 0.00 4.02
1946 2550 4.021102 TGGTAGAAGAGGCTGAAAAAGG 57.979 45.455 0.00 0.00 0.00 3.11
1976 2580 5.067023 GGTCTAAATCCAATGCAAGAAGGAG 59.933 44.000 0.00 0.00 32.91 3.69
2008 2612 1.137086 CATGCGTTAGCCTCTGGTAGT 59.863 52.381 0.00 0.00 44.33 2.73
2079 2685 2.629656 GCAGCCCCACATGTGTGTC 61.630 63.158 23.79 11.87 44.21 3.67
2080 2686 2.598394 GCAGCCCCACATGTGTGT 60.598 61.111 23.79 3.06 44.21 3.72
2081 2687 2.282674 AGCAGCCCCACATGTGTG 60.283 61.111 23.79 16.10 45.23 3.82
2082 2688 2.282674 CAGCAGCCCCACATGTGT 60.283 61.111 23.79 2.81 0.00 3.72
2083 2689 0.608856 TAACAGCAGCCCCACATGTG 60.609 55.000 19.31 19.31 0.00 3.21
2084 2690 0.322816 CTAACAGCAGCCCCACATGT 60.323 55.000 0.00 0.00 0.00 3.21
2085 2691 0.035152 TCTAACAGCAGCCCCACATG 60.035 55.000 0.00 0.00 0.00 3.21
2121 2727 3.650942 ACCAAATAACTCCACTCCTCACA 59.349 43.478 0.00 0.00 0.00 3.58
2125 2731 3.836562 ACGTACCAAATAACTCCACTCCT 59.163 43.478 0.00 0.00 0.00 3.69
2137 2743 4.879545 GGATATCACAACCACGTACCAAAT 59.120 41.667 4.83 0.00 0.00 2.32
2144 2750 4.811969 TGTAAGGATATCACAACCACGT 57.188 40.909 4.83 0.00 0.00 4.49
2145 2751 5.116180 ACATGTAAGGATATCACAACCACG 58.884 41.667 4.83 0.00 0.00 4.94
2146 2752 6.823689 AGAACATGTAAGGATATCACAACCAC 59.176 38.462 0.00 0.00 0.00 4.16
2149 2755 6.823689 ACCAGAACATGTAAGGATATCACAAC 59.176 38.462 15.62 0.00 0.00 3.32
2155 2761 6.327626 ACTGCTACCAGAACATGTAAGGATAT 59.672 38.462 15.62 0.00 41.77 1.63
2157 2763 4.471386 ACTGCTACCAGAACATGTAAGGAT 59.529 41.667 15.62 5.32 41.77 3.24
2170 2776 0.892755 TCGGGTAACACTGCTACCAG 59.107 55.000 10.23 6.69 40.64 4.00
2171 2777 1.206132 CATCGGGTAACACTGCTACCA 59.794 52.381 10.23 0.00 40.64 3.25
2172 2778 1.479323 TCATCGGGTAACACTGCTACC 59.521 52.381 0.47 0.47 38.51 3.18
2174 2780 2.102420 CCATCATCGGGTAACACTGCTA 59.898 50.000 0.00 0.00 39.74 3.49
2177 2783 2.691409 ACCATCATCGGGTAACACTG 57.309 50.000 0.00 0.00 36.72 3.66
2178 2784 4.163458 ACATAACCATCATCGGGTAACACT 59.837 41.667 0.00 0.00 37.77 3.55
2185 2792 2.146342 GCTCACATAACCATCATCGGG 58.854 52.381 0.00 0.00 0.00 5.14
2208 2815 6.882140 TCAATCGTGGAATAGGAGCTTAAAAA 59.118 34.615 0.00 0.00 0.00 1.94
2211 2818 5.607939 TCAATCGTGGAATAGGAGCTTAA 57.392 39.130 0.00 0.00 0.00 1.85
2213 2820 4.487714 TTCAATCGTGGAATAGGAGCTT 57.512 40.909 0.00 0.00 0.00 3.74
2330 2937 2.555199 CTAGAAGTGAAGCGAATGGGG 58.445 52.381 0.00 0.00 0.00 4.96
2337 2944 2.929531 TCTGAGCTAGAAGTGAAGCG 57.070 50.000 0.00 0.00 43.63 4.68
2354 2961 7.224522 AGTAAATACGATAGCCGGTTATTCT 57.775 36.000 12.50 3.41 43.93 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.