Multiple sequence alignment - TraesCS6D01G226700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G226700 chr6D 100.000 5483 0 0 1 5483 318152589 318147107 0.000000e+00 10126.0
1 TraesCS6D01G226700 chr6D 96.111 180 6 1 1 180 420476443 420476265 5.370000e-75 292.0
2 TraesCS6D01G226700 chr6B 96.460 3898 97 20 801 4684 506126131 506130001 0.000000e+00 6396.0
3 TraesCS6D01G226700 chr6B 91.415 431 25 5 375 801 506114640 506115062 1.020000e-161 580.0
4 TraesCS6D01G226700 chr6B 92.593 351 21 4 4733 5080 506130297 506130645 2.950000e-137 499.0
5 TraesCS6D01G226700 chr6B 98.605 215 3 0 5074 5288 596655798 596655584 1.110000e-101 381.0
6 TraesCS6D01G226700 chr6B 94.444 198 10 1 5285 5482 506130637 506130833 2.480000e-78 303.0
7 TraesCS6D01G226700 chr6B 98.165 109 2 0 2666 2774 204159137 204159245 2.020000e-44 191.0
8 TraesCS6D01G226700 chr6A 94.629 1750 52 17 917 2666 455708499 455706792 0.000000e+00 2673.0
9 TraesCS6D01G226700 chr6A 98.046 1177 18 2 2774 3945 455706792 455705616 0.000000e+00 2041.0
10 TraesCS6D01G226700 chr6A 92.482 1104 51 12 3977 5071 455705615 455704535 0.000000e+00 1550.0
11 TraesCS6D01G226700 chr6A 89.290 747 47 14 209 926 455710593 455709851 0.000000e+00 905.0
12 TraesCS6D01G226700 chr6A 96.111 180 7 0 1 180 534032478 534032657 1.490000e-75 294.0
13 TraesCS6D01G226700 chrUn 98.605 215 3 0 5074 5288 182413517 182413303 1.110000e-101 381.0
14 TraesCS6D01G226700 chrUn 95.575 113 5 0 2663 2775 94181868 94181980 1.210000e-41 182.0
15 TraesCS6D01G226700 chr7A 98.605 215 3 0 5074 5288 60327501 60327287 1.110000e-101 381.0
16 TraesCS6D01G226700 chr7A 98.605 215 3 0 5074 5288 563529973 563529759 1.110000e-101 381.0
17 TraesCS6D01G226700 chr7A 92.308 39 2 1 4000 4037 200040328 200040290 3.000000e-03 54.7
18 TraesCS6D01G226700 chr7A 100.000 29 0 0 4002 4030 368242192 368242220 3.000000e-03 54.7
19 TraesCS6D01G226700 chr4D 98.140 215 4 0 5074 5288 123519327 123519113 5.190000e-100 375.0
20 TraesCS6D01G226700 chr4D 98.140 215 4 0 5074 5288 483697867 483698081 5.190000e-100 375.0
21 TraesCS6D01G226700 chr4D 98.148 108 2 0 2666 2773 494123003 494122896 7.250000e-44 189.0
22 TraesCS6D01G226700 chr4D 76.667 180 24 16 211 380 390879676 390879847 3.520000e-12 84.2
23 TraesCS6D01G226700 chr4B 98.140 215 4 0 5074 5288 209048364 209048578 5.190000e-100 375.0
24 TraesCS6D01G226700 chr4B 100.000 28 0 0 3978 4005 564139194 564139221 1.000000e-02 52.8
25 TraesCS6D01G226700 chr1A 98.140 215 4 0 5074 5288 238108236 238108022 5.190000e-100 375.0
26 TraesCS6D01G226700 chr1A 98.140 215 4 0 5074 5288 238153621 238153407 5.190000e-100 375.0
27 TraesCS6D01G226700 chr7D 96.667 180 6 0 1 180 404079922 404079743 3.210000e-77 300.0
28 TraesCS6D01G226700 chr7D 97.248 109 2 1 2665 2773 60693372 60693479 3.370000e-42 183.0
29 TraesCS6D01G226700 chr7D 81.818 77 12 2 207 281 65631987 65631911 4.590000e-06 63.9
30 TraesCS6D01G226700 chr7D 100.000 29 0 0 4002 4030 310990281 310990309 3.000000e-03 54.7
31 TraesCS6D01G226700 chr1D 95.722 187 5 3 1 187 378151253 378151070 1.150000e-76 298.0
32 TraesCS6D01G226700 chr1D 96.111 180 7 0 1 180 380069226 380069405 1.490000e-75 294.0
33 TraesCS6D01G226700 chr1D 96.111 180 6 1 1 180 382845188 382845366 5.370000e-75 292.0
34 TraesCS6D01G226700 chr1D 96.396 111 4 0 2663 2773 465596801 465596911 3.370000e-42 183.0
35 TraesCS6D01G226700 chr5D 96.133 181 6 1 1 180 408963280 408963460 1.490000e-75 294.0
36 TraesCS6D01G226700 chr5D 96.111 180 6 1 1 180 515226001 515226179 5.370000e-75 292.0
37 TraesCS6D01G226700 chr5D 97.222 36 1 0 4000 4035 536420364 536420329 1.650000e-05 62.1
38 TraesCS6D01G226700 chr2D 96.111 180 7 0 1 180 174937312 174937133 1.490000e-75 294.0
39 TraesCS6D01G226700 chr5A 98.148 108 2 0 2666 2773 658993803 658993696 7.250000e-44 189.0
40 TraesCS6D01G226700 chr2A 94.017 117 7 0 2666 2782 449280138 449280022 1.570000e-40 178.0
41 TraesCS6D01G226700 chr7B 92.562 121 9 0 2661 2781 749471341 749471461 2.030000e-39 174.0
42 TraesCS6D01G226700 chr3D 97.059 34 1 0 4000 4033 429043529 429043496 2.130000e-04 58.4
43 TraesCS6D01G226700 chr3D 96.970 33 1 0 3995 4027 564658110 564658078 7.670000e-04 56.5
44 TraesCS6D01G226700 chr5B 100.000 30 0 0 3994 4023 284835383 284835412 7.670000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G226700 chr6D 318147107 318152589 5482 True 10126.000000 10126 100.00000 1 5483 1 chr6D.!!$R1 5482
1 TraesCS6D01G226700 chr6B 506126131 506130833 4702 False 2399.333333 6396 94.49900 801 5482 3 chr6B.!!$F3 4681
2 TraesCS6D01G226700 chr6A 455704535 455710593 6058 True 1792.250000 2673 93.61175 209 5071 4 chr6A.!!$R1 4862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.104671 CCCAACAGGTTTGCTTGTGG 59.895 55.000 0.0 0.0 35.01 4.17 F
676 690 0.108662 CCGACAACCCCCTACGTAAC 60.109 60.000 0.0 0.0 0.00 2.50 F
1801 3200 0.603707 TCAGTTTTGCTCTCGCTGGG 60.604 55.000 0.0 0.0 36.97 4.45 F
1927 3326 1.318576 CGGCCTTCTTGGTTTTCACT 58.681 50.000 0.0 0.0 38.35 3.41 F
2502 3901 1.608590 GGTGTGTTTGAGGTGGATGTG 59.391 52.381 0.0 0.0 0.00 3.21 F
3412 4815 1.065600 CTGGGTTGGTTGTGTTGCG 59.934 57.895 0.0 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1837 3236 0.449388 CAGGAAAACGAGATGCCAGC 59.551 55.000 0.00 0.0 0.00 4.85 R
2423 3822 1.885887 CCACATCAAATCCAACACGGT 59.114 47.619 0.00 0.0 35.57 4.83 R
2699 4098 0.961019 TTGCACCCTGTCTGAAATGC 59.039 50.000 0.00 0.0 0.00 3.56 R
3412 4815 1.153269 GAGGCCAGCTAAGACTGCC 60.153 63.158 5.01 0.0 36.29 4.85 R
3962 5366 0.744057 CATGACAGTACATGGCCGCA 60.744 55.000 0.00 0.0 42.45 5.69 R
5155 6818 0.035152 TCGCCTGGAATGTGAGCAAT 60.035 50.000 0.00 0.0 0.00 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.377839 TGATGAGTTGGATCGAGAAGAC 57.622 45.455 0.00 0.00 0.00 3.01
23 24 2.921634 TGAGTTGGATCGAGAAGACG 57.078 50.000 0.00 0.00 0.00 4.18
24 25 2.160205 TGAGTTGGATCGAGAAGACGT 58.840 47.619 0.00 0.00 34.70 4.34
25 26 2.557056 TGAGTTGGATCGAGAAGACGTT 59.443 45.455 0.00 0.00 34.70 3.99
26 27 3.172824 GAGTTGGATCGAGAAGACGTTC 58.827 50.000 0.00 0.00 34.70 3.95
27 28 1.912110 GTTGGATCGAGAAGACGTTCG 59.088 52.381 0.97 0.97 37.79 3.95
33 34 2.407090 TCGAGAAGACGTTCGACTACA 58.593 47.619 5.99 0.00 40.55 2.74
34 35 2.998670 TCGAGAAGACGTTCGACTACAT 59.001 45.455 5.99 0.00 40.55 2.29
35 36 3.061831 TCGAGAAGACGTTCGACTACATC 59.938 47.826 5.99 0.00 40.55 3.06
36 37 3.181523 CGAGAAGACGTTCGACTACATCA 60.182 47.826 1.14 0.00 39.06 3.07
37 38 4.668431 CGAGAAGACGTTCGACTACATCAA 60.668 45.833 1.14 0.00 39.06 2.57
38 39 4.474113 AGAAGACGTTCGACTACATCAAC 58.526 43.478 0.00 0.00 37.79 3.18
39 40 3.213249 AGACGTTCGACTACATCAACC 57.787 47.619 0.00 0.00 0.00 3.77
40 41 1.909532 GACGTTCGACTACATCAACCG 59.090 52.381 0.00 0.00 0.00 4.44
41 42 0.638746 CGTTCGACTACATCAACCGC 59.361 55.000 0.00 0.00 0.00 5.68
42 43 0.638746 GTTCGACTACATCAACCGCG 59.361 55.000 0.00 0.00 0.00 6.46
43 44 0.241749 TTCGACTACATCAACCGCGT 59.758 50.000 4.92 0.00 0.00 6.01
44 45 0.241749 TCGACTACATCAACCGCGTT 59.758 50.000 4.92 0.00 0.00 4.84
45 46 1.468127 TCGACTACATCAACCGCGTTA 59.532 47.619 4.92 0.00 0.00 3.18
46 47 2.095314 TCGACTACATCAACCGCGTTAA 60.095 45.455 4.92 0.00 0.00 2.01
47 48 2.278094 CGACTACATCAACCGCGTTAAG 59.722 50.000 4.92 0.00 0.00 1.85
48 49 1.997606 ACTACATCAACCGCGTTAAGC 59.002 47.619 4.92 0.00 43.95 3.09
49 50 2.268298 CTACATCAACCGCGTTAAGCT 58.732 47.619 4.92 0.00 45.59 3.74
50 51 2.373540 ACATCAACCGCGTTAAGCTA 57.626 45.000 4.92 0.00 45.59 3.32
51 52 2.690786 ACATCAACCGCGTTAAGCTAA 58.309 42.857 4.92 0.00 45.59 3.09
52 53 2.414138 ACATCAACCGCGTTAAGCTAAC 59.586 45.455 4.92 0.00 45.59 2.34
63 64 4.695560 AGCTAACGCTTCCGCTTT 57.304 50.000 0.00 0.00 46.47 3.51
64 65 2.457080 AGCTAACGCTTCCGCTTTC 58.543 52.632 0.00 0.00 46.47 2.62
65 66 1.058903 GCTAACGCTTCCGCTTTCG 59.941 57.895 0.00 0.00 38.22 3.46
83 84 2.101700 GGTCTACGAGGGTACGTGG 58.898 63.158 0.00 0.00 46.02 4.94
85 86 3.159298 TCTACGAGGGTACGTGGAC 57.841 57.895 0.00 0.00 45.53 4.02
86 87 0.324614 TCTACGAGGGTACGTGGACA 59.675 55.000 0.00 0.00 45.53 4.02
87 88 0.449388 CTACGAGGGTACGTGGACAC 59.551 60.000 0.00 0.00 44.98 3.67
88 89 0.250684 TACGAGGGTACGTGGACACA 60.251 55.000 0.00 0.00 46.02 3.72
89 90 1.080974 CGAGGGTACGTGGACACAC 60.081 63.158 0.00 0.00 44.23 3.82
90 91 1.521450 CGAGGGTACGTGGACACACT 61.521 60.000 0.00 0.00 45.50 3.55
91 92 0.243095 GAGGGTACGTGGACACACTC 59.757 60.000 2.84 2.84 45.50 3.51
92 93 0.178970 AGGGTACGTGGACACACTCT 60.179 55.000 0.00 0.00 45.50 3.24
93 94 0.243095 GGGTACGTGGACACACTCTC 59.757 60.000 0.00 0.00 45.50 3.20
94 95 0.243095 GGTACGTGGACACACTCTCC 59.757 60.000 0.00 0.00 45.50 3.71
95 96 0.243095 GTACGTGGACACACTCTCCC 59.757 60.000 0.00 0.00 45.50 4.30
96 97 0.896940 TACGTGGACACACTCTCCCC 60.897 60.000 0.00 0.00 45.50 4.81
97 98 2.943978 CGTGGACACACTCTCCCCC 61.944 68.421 3.12 0.00 45.50 5.40
98 99 1.536662 GTGGACACACTCTCCCCCT 60.537 63.158 0.00 0.00 44.29 4.79
99 100 1.229209 TGGACACACTCTCCCCCTC 60.229 63.158 0.00 0.00 0.00 4.30
100 101 1.079438 GGACACACTCTCCCCCTCT 59.921 63.158 0.00 0.00 0.00 3.69
101 102 0.973496 GGACACACTCTCCCCCTCTC 60.973 65.000 0.00 0.00 0.00 3.20
102 103 1.304547 ACACACTCTCCCCCTCTCG 60.305 63.158 0.00 0.00 0.00 4.04
103 104 1.304547 CACACTCTCCCCCTCTCGT 60.305 63.158 0.00 0.00 0.00 4.18
104 105 0.900647 CACACTCTCCCCCTCTCGTT 60.901 60.000 0.00 0.00 0.00 3.85
105 106 0.900647 ACACTCTCCCCCTCTCGTTG 60.901 60.000 0.00 0.00 0.00 4.10
106 107 1.985116 ACTCTCCCCCTCTCGTTGC 60.985 63.158 0.00 0.00 0.00 4.17
107 108 1.684049 CTCTCCCCCTCTCGTTGCT 60.684 63.158 0.00 0.00 0.00 3.91
108 109 0.395862 CTCTCCCCCTCTCGTTGCTA 60.396 60.000 0.00 0.00 0.00 3.49
109 110 0.261991 TCTCCCCCTCTCGTTGCTAT 59.738 55.000 0.00 0.00 0.00 2.97
110 111 0.390860 CTCCCCCTCTCGTTGCTATG 59.609 60.000 0.00 0.00 0.00 2.23
111 112 1.227674 CCCCCTCTCGTTGCTATGC 60.228 63.158 0.00 0.00 0.00 3.14
112 113 1.522092 CCCCTCTCGTTGCTATGCA 59.478 57.895 0.00 0.00 36.47 3.96
113 114 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
114 115 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
115 116 1.069823 CCCTCTCGTTGCTATGCATCT 59.930 52.381 0.19 0.00 38.76 2.90
116 117 2.402305 CCTCTCGTTGCTATGCATCTC 58.598 52.381 0.19 0.00 38.76 2.75
117 118 2.402305 CTCTCGTTGCTATGCATCTCC 58.598 52.381 0.19 0.00 38.76 3.71
118 119 2.034878 TCTCGTTGCTATGCATCTCCT 58.965 47.619 0.19 0.00 38.76 3.69
119 120 3.222603 TCTCGTTGCTATGCATCTCCTA 58.777 45.455 0.19 0.00 38.76 2.94
120 121 3.254411 TCTCGTTGCTATGCATCTCCTAG 59.746 47.826 0.19 0.00 38.76 3.02
121 122 3.222603 TCGTTGCTATGCATCTCCTAGA 58.777 45.455 0.19 0.00 38.76 2.43
122 123 3.829026 TCGTTGCTATGCATCTCCTAGAT 59.171 43.478 0.19 0.00 38.76 1.98
123 124 5.010282 TCGTTGCTATGCATCTCCTAGATA 58.990 41.667 0.19 0.00 38.76 1.98
124 125 5.124617 TCGTTGCTATGCATCTCCTAGATAG 59.875 44.000 0.19 0.00 38.76 2.08
125 126 5.124617 CGTTGCTATGCATCTCCTAGATAGA 59.875 44.000 0.19 0.00 38.76 1.98
126 127 6.183360 CGTTGCTATGCATCTCCTAGATAGAT 60.183 42.308 0.19 0.00 38.76 1.98
127 128 6.957920 TGCTATGCATCTCCTAGATAGATC 57.042 41.667 0.19 0.00 32.12 2.75
128 129 6.671605 TGCTATGCATCTCCTAGATAGATCT 58.328 40.000 0.19 0.00 32.12 2.75
129 130 7.124721 TGCTATGCATCTCCTAGATAGATCTT 58.875 38.462 0.19 0.00 32.12 2.40
130 131 7.068470 TGCTATGCATCTCCTAGATAGATCTTG 59.932 40.741 0.19 0.00 32.12 3.02
131 132 5.657826 TGCATCTCCTAGATAGATCTTGC 57.342 43.478 0.00 0.69 38.32 4.01
132 133 4.157472 TGCATCTCCTAGATAGATCTTGCG 59.843 45.833 0.00 0.00 36.48 4.85
133 134 4.157656 GCATCTCCTAGATAGATCTTGCGT 59.842 45.833 0.00 0.00 38.32 5.24
134 135 5.639757 CATCTCCTAGATAGATCTTGCGTG 58.360 45.833 0.00 0.00 38.32 5.34
135 136 4.974399 TCTCCTAGATAGATCTTGCGTGA 58.026 43.478 0.00 0.00 38.32 4.35
136 137 5.000591 TCTCCTAGATAGATCTTGCGTGAG 58.999 45.833 0.00 1.23 38.32 3.51
173 174 6.724694 TTTGAAATTGCATGCTATGTTTCC 57.275 33.333 20.33 1.00 0.00 3.13
174 175 4.757594 TGAAATTGCATGCTATGTTTCCC 58.242 39.130 20.33 0.64 0.00 3.97
175 176 4.222366 TGAAATTGCATGCTATGTTTCCCA 59.778 37.500 20.33 3.39 0.00 4.37
176 177 4.822685 AATTGCATGCTATGTTTCCCAA 57.177 36.364 20.33 0.30 0.00 4.12
177 178 3.591196 TTGCATGCTATGTTTCCCAAC 57.409 42.857 20.33 0.00 0.00 3.77
179 180 2.492881 TGCATGCTATGTTTCCCAACAG 59.507 45.455 20.33 0.00 46.25 3.16
180 181 2.159198 GCATGCTATGTTTCCCAACAGG 60.159 50.000 11.37 0.00 46.25 4.00
181 182 2.969821 TGCTATGTTTCCCAACAGGT 57.030 45.000 0.00 0.00 46.25 4.00
182 183 3.237268 TGCTATGTTTCCCAACAGGTT 57.763 42.857 0.00 0.00 46.25 3.50
183 184 3.571590 TGCTATGTTTCCCAACAGGTTT 58.428 40.909 0.00 0.00 46.25 3.27
184 185 3.320541 TGCTATGTTTCCCAACAGGTTTG 59.679 43.478 0.00 0.00 46.25 2.93
185 186 2.908688 ATGTTTCCCAACAGGTTTGC 57.091 45.000 0.00 0.00 46.25 3.68
186 187 1.859302 TGTTTCCCAACAGGTTTGCT 58.141 45.000 0.00 0.00 38.03 3.91
187 188 2.183679 TGTTTCCCAACAGGTTTGCTT 58.816 42.857 0.00 0.00 38.03 3.91
188 189 2.093764 TGTTTCCCAACAGGTTTGCTTG 60.094 45.455 0.00 0.00 38.03 4.01
189 190 1.859302 TTCCCAACAGGTTTGCTTGT 58.141 45.000 0.00 0.00 36.42 3.16
190 191 1.110442 TCCCAACAGGTTTGCTTGTG 58.890 50.000 0.00 0.00 35.01 3.33
191 192 0.104671 CCCAACAGGTTTGCTTGTGG 59.895 55.000 0.00 0.00 35.01 4.17
192 193 1.110442 CCAACAGGTTTGCTTGTGGA 58.890 50.000 0.00 0.00 35.01 4.02
193 194 1.067516 CCAACAGGTTTGCTTGTGGAG 59.932 52.381 0.00 0.00 35.01 3.86
194 195 2.023673 CAACAGGTTTGCTTGTGGAGA 58.976 47.619 0.00 0.00 35.01 3.71
195 196 1.972872 ACAGGTTTGCTTGTGGAGAG 58.027 50.000 0.00 0.00 33.45 3.20
196 197 1.212935 ACAGGTTTGCTTGTGGAGAGT 59.787 47.619 0.00 0.00 33.45 3.24
197 198 1.605710 CAGGTTTGCTTGTGGAGAGTG 59.394 52.381 0.00 0.00 0.00 3.51
198 199 0.954452 GGTTTGCTTGTGGAGAGTGG 59.046 55.000 0.00 0.00 0.00 4.00
199 200 1.476833 GGTTTGCTTGTGGAGAGTGGA 60.477 52.381 0.00 0.00 0.00 4.02
200 201 1.604278 GTTTGCTTGTGGAGAGTGGAC 59.396 52.381 0.00 0.00 0.00 4.02
201 202 1.131638 TTGCTTGTGGAGAGTGGACT 58.868 50.000 0.00 0.00 0.00 3.85
202 203 0.681733 TGCTTGTGGAGAGTGGACTC 59.318 55.000 0.00 0.00 43.17 3.36
290 291 2.676463 GCTTGCAACTGGGACACAAAAA 60.676 45.455 0.00 0.00 0.00 1.94
311 312 0.108756 GGGCCAGAGACGAGTTGTAC 60.109 60.000 4.39 0.00 0.00 2.90
332 333 0.878523 TCGAGGGTGAACTTGCAACG 60.879 55.000 0.00 0.00 0.00 4.10
384 385 0.182537 TGGGGGTGAACTTGTGACTG 59.817 55.000 0.00 0.00 0.00 3.51
388 389 2.487265 GGGGTGAACTTGTGACTGTGAT 60.487 50.000 0.00 0.00 0.00 3.06
397 398 2.959516 TGTGACTGTGATAGAAAGGCG 58.040 47.619 0.00 0.00 0.00 5.52
414 415 2.682856 AGGCGTGCAAAATACAATCGAT 59.317 40.909 0.00 0.00 0.00 3.59
461 471 1.825474 ACTAGCGGACATGCAACTAGT 59.175 47.619 10.76 10.76 38.90 2.57
468 478 3.363970 CGGACATGCAACTAGTTGACAAC 60.364 47.826 34.43 23.14 42.93 3.32
474 484 3.389983 TGCAACTAGTTGACAACCCTACT 59.610 43.478 34.43 0.00 42.93 2.57
480 490 1.697982 GTTGACAACCCTACTGACCCT 59.302 52.381 7.10 0.00 0.00 4.34
481 491 1.348064 TGACAACCCTACTGACCCTG 58.652 55.000 0.00 0.00 0.00 4.45
489 499 2.904434 CCCTACTGACCCTGTTGTAGTT 59.096 50.000 0.00 0.00 32.80 2.24
490 500 3.306780 CCCTACTGACCCTGTTGTAGTTG 60.307 52.174 0.00 0.00 32.80 3.16
512 522 1.522668 TTGGGAGTCATTTGCAGTCG 58.477 50.000 0.00 0.00 0.00 4.18
527 537 3.499157 TGCAGTCGGGTTACAACATTTAC 59.501 43.478 0.00 0.00 0.00 2.01
544 554 6.055588 ACATTTACAGTTGCAAGTCTAGTGT 58.944 36.000 3.08 2.27 37.70 3.55
571 581 2.223745 TGCAACTAGAAAACGAACCCC 58.776 47.619 0.00 0.00 0.00 4.95
573 583 2.853705 CAACTAGAAAACGAACCCCCA 58.146 47.619 0.00 0.00 0.00 4.96
585 599 2.356741 CGAACCCCCATACCAAGTTCAT 60.357 50.000 0.00 0.00 37.31 2.57
638 652 4.634012 ACCCTTGCAGTTACATGTCTAA 57.366 40.909 0.00 0.00 0.00 2.10
643 657 5.415701 CCTTGCAGTTACATGTCTAATGGTT 59.584 40.000 0.00 0.00 0.00 3.67
646 660 5.643348 TGCAGTTACATGTCTAATGGTTGAG 59.357 40.000 0.00 0.00 0.00 3.02
656 670 4.937620 GTCTAATGGTTGAGCATGAACTGA 59.062 41.667 0.00 0.00 30.96 3.41
672 686 2.221906 CTGACCGACAACCCCCTACG 62.222 65.000 0.00 0.00 0.00 3.51
676 690 0.108662 CCGACAACCCCCTACGTAAC 60.109 60.000 0.00 0.00 0.00 2.50
691 705 0.609662 GTAACCGGCCCAGTTACAGA 59.390 55.000 27.06 4.54 45.74 3.41
709 723 4.917385 ACAGACACATAAAAGCCCATGTA 58.083 39.130 0.00 0.00 33.66 2.29
776 790 5.419155 TGAATATTTAAATTGGCCGACACCA 59.581 36.000 5.91 0.00 38.16 4.17
796 810 3.066900 CCACTCTATCGACCCAGTTACAG 59.933 52.174 0.00 0.00 0.00 2.74
913 943 5.023533 AGTGCGTGTACCTCATCAATAAT 57.976 39.130 0.00 0.00 0.00 1.28
1029 2419 2.361357 CCGACGTCACTCCTCCCT 60.361 66.667 17.16 0.00 0.00 4.20
1389 2783 4.390297 CCTCTGTTCCTCTTTCGAATCAAC 59.610 45.833 0.00 0.00 0.00 3.18
1399 2793 6.183360 CCTCTTTCGAATCAACATTAGACACC 60.183 42.308 0.00 0.00 0.00 4.16
1503 2897 3.725641 GCAAGAGCCAATTGGTAGCCAA 61.726 50.000 25.19 2.86 40.61 4.52
1529 2923 4.098914 TCTTAGACTTGCCAACCATTGT 57.901 40.909 0.00 0.00 0.00 2.71
1539 2933 3.243805 TGCCAACCATTGTCATGTCAAAG 60.244 43.478 9.41 5.31 0.00 2.77
1608 3003 7.013083 AGCTCAAATATTCTGATCCATGTTGTC 59.987 37.037 0.00 0.00 0.00 3.18
1609 3004 7.201758 GCTCAAATATTCTGATCCATGTTGTCA 60.202 37.037 0.00 0.00 0.00 3.58
1610 3005 7.988737 TCAAATATTCTGATCCATGTTGTCAC 58.011 34.615 0.00 0.00 0.00 3.67
1654 3049 8.819643 ACCTAGTTTTTCTATCATCGAATAGC 57.180 34.615 0.00 0.00 0.00 2.97
1658 3053 7.634522 AGTTTTTCTATCATCGAATAGCTTGC 58.365 34.615 0.00 0.00 0.00 4.01
1690 3085 6.883756 TCAGTAGCATTTGGTTGTTATCATCA 59.116 34.615 0.00 0.00 0.00 3.07
1691 3086 6.968904 CAGTAGCATTTGGTTGTTATCATCAC 59.031 38.462 0.00 0.00 0.00 3.06
1692 3087 6.886459 AGTAGCATTTGGTTGTTATCATCACT 59.114 34.615 0.00 0.00 0.00 3.41
1693 3088 6.594788 AGCATTTGGTTGTTATCATCACTT 57.405 33.333 0.00 0.00 0.00 3.16
1801 3200 0.603707 TCAGTTTTGCTCTCGCTGGG 60.604 55.000 0.00 0.00 36.97 4.45
1927 3326 1.318576 CGGCCTTCTTGGTTTTCACT 58.681 50.000 0.00 0.00 38.35 3.41
2108 3507 5.136105 ACATATTGGCTCCAATCCTTCTTC 58.864 41.667 16.68 0.00 44.50 2.87
2423 3822 5.717078 AACTATGTCTGTGGTTTCGTCTA 57.283 39.130 0.00 0.00 0.00 2.59
2502 3901 1.608590 GGTGTGTTTGAGGTGGATGTG 59.391 52.381 0.00 0.00 0.00 3.21
2586 3985 7.472334 AGTCTTCTTTGCATATGTTGGATTT 57.528 32.000 4.29 0.00 0.00 2.17
2699 4098 6.208599 TGTTCACTTTTATAAGGCCTTGAAGG 59.791 38.462 28.77 20.04 35.61 3.46
3090 4489 2.632377 ACATTACTGGGTGAAGATGCG 58.368 47.619 0.00 0.00 0.00 4.73
3328 4731 3.263425 TGTATCTTGGACTTGGAAGGGAC 59.737 47.826 0.00 0.00 0.00 4.46
3412 4815 1.065600 CTGGGTTGGTTGTGTTGCG 59.934 57.895 0.00 0.00 0.00 4.85
3821 5225 4.992951 AGGCAAGTGCATTTTCTTTCAATC 59.007 37.500 5.52 0.00 44.36 2.67
3913 5317 6.289834 TGGTTTCACAATCATTTGCATCTTT 58.710 32.000 0.00 0.00 36.22 2.52
3962 5366 1.441311 CTTTGTGGTTTGCGGGCTT 59.559 52.632 0.00 0.00 0.00 4.35
3964 5368 2.914777 TTTGTGGTTTGCGGGCTTGC 62.915 55.000 0.00 0.00 0.00 4.01
3982 5386 0.744414 GCGGCCATGTACTGTCATGT 60.744 55.000 2.24 0.00 42.29 3.21
3988 5392 3.741388 GCCATGTACTGTCATGTACTCCC 60.741 52.174 14.63 0.00 42.29 4.30
3992 5396 2.623418 ACTGTCATGTACTCCCTCCA 57.377 50.000 0.00 0.00 0.00 3.86
4060 5466 2.705658 TGGATGTCAGATCCCGCTATTT 59.294 45.455 0.00 0.00 37.40 1.40
4213 5619 5.116084 TGCTCAGGTAAGCAGGATTTTAT 57.884 39.130 0.00 0.00 47.00 1.40
4226 5632 9.627123 AAGCAGGATTTTATTTGTAGCTGTATA 57.373 29.630 0.00 0.00 0.00 1.47
4315 5724 5.104151 TGCCATCATAGGACTAATGGTTTGA 60.104 40.000 10.29 0.00 40.66 2.69
4356 5765 5.121811 CAGCTACATGAAGAAGCTTGGTAT 58.878 41.667 2.10 0.00 43.97 2.73
4383 5792 3.291584 TGTCATCCTTAGTCTCATCGCT 58.708 45.455 0.00 0.00 0.00 4.93
4389 5798 1.751351 CTTAGTCTCATCGCTGTGGGA 59.249 52.381 0.00 0.00 0.00 4.37
4425 5834 1.539496 GGTCAGTACAACGCTGTTCCA 60.539 52.381 0.00 0.00 36.96 3.53
4550 5959 4.765970 TCAGGGGAGGCCATGGCT 62.766 66.667 34.70 21.29 42.48 4.75
4573 5982 5.250200 TGTAACCCTTTACCTGTATTGCTG 58.750 41.667 0.00 0.00 37.39 4.41
4610 6019 5.517322 AGTACGTTCTCCATAGTTCCATC 57.483 43.478 0.00 0.00 0.00 3.51
4692 6101 3.363178 CGAAAGTTTTGTTGAGCAGGAC 58.637 45.455 0.00 0.00 0.00 3.85
4704 6113 0.744414 AGCAGGACACACACACACAC 60.744 55.000 0.00 0.00 0.00 3.82
4705 6114 1.024046 GCAGGACACACACACACACA 61.024 55.000 0.00 0.00 0.00 3.72
4706 6115 0.726827 CAGGACACACACACACACAC 59.273 55.000 0.00 0.00 0.00 3.82
4707 6116 0.323302 AGGACACACACACACACACA 59.677 50.000 0.00 0.00 0.00 3.72
4708 6117 0.446222 GGACACACACACACACACAC 59.554 55.000 0.00 0.00 0.00 3.82
4709 6118 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
4710 6119 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4711 6120 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4712 6121 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4713 6122 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4714 6123 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4715 6124 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4716 6125 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4717 6126 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4718 6127 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4719 6128 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4720 6129 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4759 6415 4.614946 CTTGGAAAGGCTTTGAAAGTCAG 58.385 43.478 18.79 0.00 41.27 3.51
4769 6425 5.221322 GGCTTTGAAAGTCAGGATTGAAAGT 60.221 40.000 4.40 0.00 34.49 2.66
4782 6438 9.567776 TCAGGATTGAAAGTTTTATGTACTTGA 57.432 29.630 0.00 0.00 36.06 3.02
4900 6561 2.991190 GCCGTTTCATGACGTCTCTTTA 59.009 45.455 17.92 0.00 41.26 1.85
4910 6571 5.013568 TGACGTCTCTTTAACAGGAACAA 57.986 39.130 17.92 0.00 0.00 2.83
4933 6594 8.571336 ACAAGATTTTGAGTTTCTTACATCTGG 58.429 33.333 2.48 0.00 37.73 3.86
4966 6627 2.344950 CTCTGCTCGCTGTGAAAGAAT 58.655 47.619 5.21 0.00 0.00 2.40
4967 6628 2.071540 TCTGCTCGCTGTGAAAGAATG 58.928 47.619 0.00 0.00 0.00 2.67
4969 6630 1.270785 TGCTCGCTGTGAAAGAATGGA 60.271 47.619 0.00 0.00 0.00 3.41
5011 6674 3.037941 GGCTCAGCCTCCTCGTATA 57.962 57.895 9.09 0.00 46.69 1.47
5012 6675 1.551452 GGCTCAGCCTCCTCGTATAT 58.449 55.000 9.09 0.00 46.69 0.86
5079 6742 8.964420 ACAAATAACATGGAACTATTGTTTCG 57.036 30.769 0.00 0.00 36.39 3.46
5080 6743 8.788806 ACAAATAACATGGAACTATTGTTTCGA 58.211 29.630 0.00 0.00 36.39 3.71
5081 6744 9.061610 CAAATAACATGGAACTATTGTTTCGAC 57.938 33.333 0.00 0.00 36.39 4.20
5082 6745 4.921470 ACATGGAACTATTGTTTCGACG 57.079 40.909 0.00 0.00 36.39 5.12
5083 6746 4.562082 ACATGGAACTATTGTTTCGACGA 58.438 39.130 0.00 0.00 36.39 4.20
5084 6747 4.625742 ACATGGAACTATTGTTTCGACGAG 59.374 41.667 0.00 0.00 36.39 4.18
5085 6748 4.508461 TGGAACTATTGTTTCGACGAGA 57.492 40.909 0.00 0.00 36.39 4.04
5086 6749 4.873817 TGGAACTATTGTTTCGACGAGAA 58.126 39.130 0.00 0.00 36.39 2.87
5087 6750 4.682860 TGGAACTATTGTTTCGACGAGAAC 59.317 41.667 12.83 12.83 38.83 3.01
5088 6751 4.682860 GGAACTATTGTTTCGACGAGAACA 59.317 41.667 16.38 16.38 38.83 3.18
5089 6752 5.388164 GGAACTATTGTTTCGACGAGAACAC 60.388 44.000 18.62 7.87 38.83 3.32
5090 6753 3.985925 ACTATTGTTTCGACGAGAACACC 59.014 43.478 18.62 0.00 38.83 4.16
5091 6754 1.202203 TTGTTTCGACGAGAACACCG 58.798 50.000 18.62 0.00 38.83 4.94
5092 6755 0.381445 TGTTTCGACGAGAACACCGA 59.619 50.000 16.38 0.00 38.83 4.69
5093 6756 1.202279 TGTTTCGACGAGAACACCGAA 60.202 47.619 16.38 0.00 38.83 4.30
5094 6757 1.854126 GTTTCGACGAGAACACCGAAA 59.146 47.619 14.10 0.00 45.07 3.46
5095 6758 2.206815 TTCGACGAGAACACCGAAAA 57.793 45.000 0.00 0.00 37.97 2.29
5096 6759 2.206815 TCGACGAGAACACCGAAAAA 57.793 45.000 0.00 0.00 0.00 1.94
5119 6782 6.770746 AACCTAATTCAGCTCTACGTAAGA 57.229 37.500 0.00 0.00 43.62 2.10
5120 6783 6.963083 ACCTAATTCAGCTCTACGTAAGAT 57.037 37.500 0.00 0.00 43.62 2.40
5121 6784 8.461249 AACCTAATTCAGCTCTACGTAAGATA 57.539 34.615 0.00 0.00 43.62 1.98
5122 6785 8.101654 ACCTAATTCAGCTCTACGTAAGATAG 57.898 38.462 0.00 0.00 43.62 2.08
5123 6786 7.024768 CCTAATTCAGCTCTACGTAAGATAGC 58.975 42.308 0.00 3.92 43.62 2.97
5124 6787 6.392625 AATTCAGCTCTACGTAAGATAGCA 57.607 37.500 16.48 2.52 40.49 3.49
5125 6788 5.830000 TTCAGCTCTACGTAAGATAGCAA 57.170 39.130 16.48 5.27 40.49 3.91
5126 6789 5.830000 TCAGCTCTACGTAAGATAGCAAA 57.170 39.130 16.48 5.80 40.49 3.68
5127 6790 6.203808 TCAGCTCTACGTAAGATAGCAAAA 57.796 37.500 16.48 4.05 40.49 2.44
5128 6791 6.266323 TCAGCTCTACGTAAGATAGCAAAAG 58.734 40.000 16.48 7.46 40.49 2.27
5129 6792 6.037098 CAGCTCTACGTAAGATAGCAAAAGT 58.963 40.000 16.48 0.00 40.49 2.66
5130 6793 7.066645 TCAGCTCTACGTAAGATAGCAAAAGTA 59.933 37.037 16.48 0.00 40.49 2.24
5131 6794 7.166142 CAGCTCTACGTAAGATAGCAAAAGTAC 59.834 40.741 16.48 0.00 40.49 2.73
5132 6795 6.140422 GCTCTACGTAAGATAGCAAAAGTACG 59.860 42.308 11.75 7.47 40.00 3.67
5133 6796 6.489675 TCTACGTAAGATAGCAAAAGTACGG 58.510 40.000 12.02 0.00 38.82 4.02
5134 6797 5.064441 ACGTAAGATAGCAAAAGTACGGT 57.936 39.130 12.02 0.00 38.82 4.83
5135 6798 5.473039 ACGTAAGATAGCAAAAGTACGGTT 58.527 37.500 12.02 0.00 38.82 4.44
5136 6799 5.346822 ACGTAAGATAGCAAAAGTACGGTTG 59.653 40.000 12.02 7.08 38.82 3.77
5137 6800 5.574055 CGTAAGATAGCAAAAGTACGGTTGA 59.426 40.000 13.74 0.00 43.02 3.18
5138 6801 6.237490 CGTAAGATAGCAAAAGTACGGTTGAG 60.237 42.308 13.74 0.08 43.02 3.02
5139 6802 3.933332 AGATAGCAAAAGTACGGTTGAGC 59.067 43.478 13.74 8.23 0.00 4.26
5140 6803 1.961793 AGCAAAAGTACGGTTGAGCA 58.038 45.000 13.74 0.00 0.00 4.26
5141 6804 2.294074 AGCAAAAGTACGGTTGAGCAA 58.706 42.857 13.74 0.00 0.00 3.91
5142 6805 2.884639 AGCAAAAGTACGGTTGAGCAAT 59.115 40.909 13.74 0.00 0.00 3.56
5143 6806 3.058224 AGCAAAAGTACGGTTGAGCAATC 60.058 43.478 13.74 0.00 0.00 2.67
5144 6807 3.304391 GCAAAAGTACGGTTGAGCAATCA 60.304 43.478 13.74 0.00 0.00 2.57
5145 6808 4.791411 GCAAAAGTACGGTTGAGCAATCAA 60.791 41.667 13.74 0.00 0.00 2.57
5146 6809 4.483476 AAAGTACGGTTGAGCAATCAAC 57.517 40.909 11.71 11.71 46.60 3.18
5159 6822 8.697067 GTTGAGCAATCAACATGATATAATTGC 58.303 33.333 14.53 18.90 46.57 3.56
5163 6826 8.224169 GCAATCAACATGATATAATTGCTCAC 57.776 34.615 19.09 0.00 43.37 3.51
5164 6827 7.863877 GCAATCAACATGATATAATTGCTCACA 59.136 33.333 19.09 0.00 43.37 3.58
5165 6828 9.908152 CAATCAACATGATATAATTGCTCACAT 57.092 29.630 0.00 0.00 35.76 3.21
5168 6831 8.570488 TCAACATGATATAATTGCTCACATTCC 58.430 33.333 0.00 0.00 0.00 3.01
5169 6832 8.354426 CAACATGATATAATTGCTCACATTCCA 58.646 33.333 0.00 0.00 0.00 3.53
5170 6833 8.107399 ACATGATATAATTGCTCACATTCCAG 57.893 34.615 0.00 0.00 0.00 3.86
5171 6834 7.176165 ACATGATATAATTGCTCACATTCCAGG 59.824 37.037 0.00 0.00 0.00 4.45
5172 6835 5.474532 TGATATAATTGCTCACATTCCAGGC 59.525 40.000 0.00 0.00 0.00 4.85
5173 6836 0.813184 AATTGCTCACATTCCAGGCG 59.187 50.000 0.00 0.00 0.00 5.52
5174 6837 0.035152 ATTGCTCACATTCCAGGCGA 60.035 50.000 0.00 0.00 0.00 5.54
5175 6838 0.250684 TTGCTCACATTCCAGGCGAA 60.251 50.000 0.00 0.00 34.14 4.70
5176 6839 0.674581 TGCTCACATTCCAGGCGAAG 60.675 55.000 0.00 0.00 32.78 3.79
5177 6840 1.372087 GCTCACATTCCAGGCGAAGG 61.372 60.000 0.00 0.00 38.26 3.46
5178 6841 0.745845 CTCACATTCCAGGCGAAGGG 60.746 60.000 0.00 0.00 36.56 3.95
5179 6842 2.044946 ACATTCCAGGCGAAGGGC 60.045 61.111 0.00 0.00 36.56 5.19
5180 6843 2.045045 CATTCCAGGCGAAGGGCA 60.045 61.111 0.00 0.00 46.16 5.36
5181 6844 1.454479 CATTCCAGGCGAAGGGCAT 60.454 57.895 0.00 0.00 46.16 4.40
5182 6845 0.179020 CATTCCAGGCGAAGGGCATA 60.179 55.000 0.00 0.00 46.16 3.14
5183 6846 0.550914 ATTCCAGGCGAAGGGCATAA 59.449 50.000 0.00 0.00 46.16 1.90
5184 6847 0.550914 TTCCAGGCGAAGGGCATAAT 59.449 50.000 0.00 0.00 46.16 1.28
5185 6848 0.550914 TCCAGGCGAAGGGCATAATT 59.449 50.000 0.00 0.00 46.16 1.40
5186 6849 0.954452 CCAGGCGAAGGGCATAATTC 59.046 55.000 0.00 0.00 46.16 2.17
5191 6854 0.588252 CGAAGGGCATAATTCGCAGG 59.412 55.000 2.55 0.00 41.43 4.85
5192 6855 1.810031 CGAAGGGCATAATTCGCAGGA 60.810 52.381 2.55 0.00 41.43 3.86
5193 6856 2.297701 GAAGGGCATAATTCGCAGGAA 58.702 47.619 2.55 0.00 36.41 3.36
5194 6857 1.680338 AGGGCATAATTCGCAGGAAC 58.320 50.000 2.55 0.00 34.37 3.62
5195 6858 1.064758 AGGGCATAATTCGCAGGAACA 60.065 47.619 2.55 0.00 34.37 3.18
5196 6859 1.956477 GGGCATAATTCGCAGGAACAT 59.044 47.619 2.55 0.00 34.37 2.71
5197 6860 2.362077 GGGCATAATTCGCAGGAACATT 59.638 45.455 2.55 0.00 34.37 2.71
5198 6861 3.550842 GGGCATAATTCGCAGGAACATTC 60.551 47.826 2.55 0.00 34.37 2.67
5199 6862 3.316308 GGCATAATTCGCAGGAACATTCT 59.684 43.478 2.55 0.00 34.37 2.40
5200 6863 4.515191 GGCATAATTCGCAGGAACATTCTA 59.485 41.667 2.55 0.00 34.37 2.10
5201 6864 5.182001 GGCATAATTCGCAGGAACATTCTAT 59.818 40.000 2.55 0.00 34.37 1.98
5202 6865 6.371548 GGCATAATTCGCAGGAACATTCTATA 59.628 38.462 2.55 0.00 34.37 1.31
5203 6866 7.413438 GGCATAATTCGCAGGAACATTCTATAG 60.413 40.741 0.00 0.00 34.37 1.31
5204 6867 7.118390 GCATAATTCGCAGGAACATTCTATAGT 59.882 37.037 0.00 0.00 34.37 2.12
5205 6868 8.651588 CATAATTCGCAGGAACATTCTATAGTC 58.348 37.037 0.00 0.00 34.37 2.59
5206 6869 5.854010 TTCGCAGGAACATTCTATAGTCT 57.146 39.130 0.00 0.00 0.00 3.24
5207 6870 5.854010 TCGCAGGAACATTCTATAGTCTT 57.146 39.130 0.00 0.00 0.00 3.01
5208 6871 6.954487 TCGCAGGAACATTCTATAGTCTTA 57.046 37.500 0.00 0.00 0.00 2.10
5209 6872 6.971602 TCGCAGGAACATTCTATAGTCTTAG 58.028 40.000 0.00 0.00 0.00 2.18
5210 6873 6.546403 TCGCAGGAACATTCTATAGTCTTAGT 59.454 38.462 0.00 0.00 0.00 2.24
5211 6874 6.858993 CGCAGGAACATTCTATAGTCTTAGTC 59.141 42.308 0.00 0.00 0.00 2.59
5212 6875 7.468768 CGCAGGAACATTCTATAGTCTTAGTCA 60.469 40.741 0.00 0.00 0.00 3.41
5213 6876 7.865385 GCAGGAACATTCTATAGTCTTAGTCAG 59.135 40.741 0.00 0.00 0.00 3.51
5214 6877 9.126151 CAGGAACATTCTATAGTCTTAGTCAGA 57.874 37.037 0.00 0.00 0.00 3.27
5215 6878 9.349713 AGGAACATTCTATAGTCTTAGTCAGAG 57.650 37.037 0.00 0.00 29.34 3.35
5216 6879 8.573035 GGAACATTCTATAGTCTTAGTCAGAGG 58.427 40.741 0.00 0.00 29.34 3.69
5217 6880 9.344772 GAACATTCTATAGTCTTAGTCAGAGGA 57.655 37.037 0.00 0.00 29.34 3.71
5218 6881 8.918202 ACATTCTATAGTCTTAGTCAGAGGAG 57.082 38.462 0.00 0.00 29.34 3.69
5219 6882 7.942341 ACATTCTATAGTCTTAGTCAGAGGAGG 59.058 40.741 0.00 0.00 29.34 4.30
5220 6883 7.454553 TTCTATAGTCTTAGTCAGAGGAGGT 57.545 40.000 0.00 0.00 29.34 3.85
5221 6884 8.564364 TTCTATAGTCTTAGTCAGAGGAGGTA 57.436 38.462 0.00 0.00 29.34 3.08
5222 6885 8.197592 TCTATAGTCTTAGTCAGAGGAGGTAG 57.802 42.308 0.00 0.00 29.34 3.18
5223 6886 8.011883 TCTATAGTCTTAGTCAGAGGAGGTAGA 58.988 40.741 0.00 0.00 29.34 2.59
5224 6887 5.367945 AGTCTTAGTCAGAGGAGGTAGAG 57.632 47.826 0.00 0.00 29.34 2.43
5225 6888 4.786454 AGTCTTAGTCAGAGGAGGTAGAGT 59.214 45.833 0.00 0.00 29.34 3.24
5226 6889 4.879545 GTCTTAGTCAGAGGAGGTAGAGTG 59.120 50.000 0.00 0.00 29.34 3.51
5227 6890 4.783763 TCTTAGTCAGAGGAGGTAGAGTGA 59.216 45.833 0.00 0.00 0.00 3.41
5228 6891 5.251005 TCTTAGTCAGAGGAGGTAGAGTGAA 59.749 44.000 0.00 0.00 0.00 3.18
5229 6892 4.390129 AGTCAGAGGAGGTAGAGTGAAA 57.610 45.455 0.00 0.00 0.00 2.69
5230 6893 4.340617 AGTCAGAGGAGGTAGAGTGAAAG 58.659 47.826 0.00 0.00 0.00 2.62
5231 6894 4.043561 AGTCAGAGGAGGTAGAGTGAAAGA 59.956 45.833 0.00 0.00 0.00 2.52
5232 6895 4.953579 GTCAGAGGAGGTAGAGTGAAAGAT 59.046 45.833 0.00 0.00 0.00 2.40
5233 6896 5.420739 GTCAGAGGAGGTAGAGTGAAAGATT 59.579 44.000 0.00 0.00 0.00 2.40
5234 6897 5.654650 TCAGAGGAGGTAGAGTGAAAGATTC 59.345 44.000 0.00 0.00 0.00 2.52
5235 6898 4.642885 AGAGGAGGTAGAGTGAAAGATTCG 59.357 45.833 0.00 0.00 0.00 3.34
5236 6899 3.131400 AGGAGGTAGAGTGAAAGATTCGC 59.869 47.826 0.00 0.00 40.41 4.70
5237 6900 3.449632 GAGGTAGAGTGAAAGATTCGCC 58.550 50.000 0.35 0.00 40.99 5.54
5238 6901 2.832129 AGGTAGAGTGAAAGATTCGCCA 59.168 45.455 0.35 0.00 40.99 5.69
5239 6902 3.118956 AGGTAGAGTGAAAGATTCGCCAG 60.119 47.826 0.35 0.00 40.99 4.85
5240 6903 2.393271 AGAGTGAAAGATTCGCCAGG 57.607 50.000 0.35 0.00 40.99 4.45
5241 6904 1.625818 AGAGTGAAAGATTCGCCAGGT 59.374 47.619 0.35 0.00 40.99 4.00
5242 6905 1.734465 GAGTGAAAGATTCGCCAGGTG 59.266 52.381 0.00 0.00 40.99 4.00
5243 6906 1.072331 AGTGAAAGATTCGCCAGGTGT 59.928 47.619 0.00 0.00 40.99 4.16
5244 6907 1.197721 GTGAAAGATTCGCCAGGTGTG 59.802 52.381 0.00 0.00 34.17 3.82
5245 6908 1.071542 TGAAAGATTCGCCAGGTGTGA 59.928 47.619 0.00 0.00 0.00 3.58
5246 6909 2.151202 GAAAGATTCGCCAGGTGTGAA 58.849 47.619 0.00 0.00 46.82 3.18
5247 6910 2.270352 AAGATTCGCCAGGTGTGAAA 57.730 45.000 0.00 0.00 45.96 2.69
5248 6911 2.496899 AGATTCGCCAGGTGTGAAAT 57.503 45.000 0.00 0.00 45.96 2.17
5249 6912 2.359900 AGATTCGCCAGGTGTGAAATC 58.640 47.619 0.00 2.52 45.96 2.17
5250 6913 1.401905 GATTCGCCAGGTGTGAAATCC 59.598 52.381 0.00 0.00 45.96 3.01
5251 6914 0.608035 TTCGCCAGGTGTGAAATCCC 60.608 55.000 0.00 0.00 40.41 3.85
5252 6915 1.303236 CGCCAGGTGTGAAATCCCA 60.303 57.895 0.00 0.00 0.00 4.37
5253 6916 0.680921 CGCCAGGTGTGAAATCCCAT 60.681 55.000 0.00 0.00 0.00 4.00
5254 6917 1.106285 GCCAGGTGTGAAATCCCATC 58.894 55.000 0.00 0.00 0.00 3.51
5255 6918 1.382522 CCAGGTGTGAAATCCCATCG 58.617 55.000 0.00 0.00 0.00 3.84
5256 6919 1.340017 CCAGGTGTGAAATCCCATCGT 60.340 52.381 0.00 0.00 0.00 3.73
5257 6920 2.093181 CCAGGTGTGAAATCCCATCGTA 60.093 50.000 0.00 0.00 0.00 3.43
5258 6921 3.433598 CCAGGTGTGAAATCCCATCGTAT 60.434 47.826 0.00 0.00 0.00 3.06
5259 6922 4.199310 CAGGTGTGAAATCCCATCGTATT 58.801 43.478 0.00 0.00 0.00 1.89
5260 6923 4.273480 CAGGTGTGAAATCCCATCGTATTC 59.727 45.833 0.00 0.00 0.00 1.75
5261 6924 3.247648 GGTGTGAAATCCCATCGTATTCG 59.752 47.826 0.00 0.00 38.55 3.34
5273 6936 2.995283 TCGTATTCGAGGAGTCAAGGA 58.005 47.619 0.00 0.00 41.35 3.36
5274 6937 3.552875 TCGTATTCGAGGAGTCAAGGAT 58.447 45.455 0.00 0.00 41.35 3.24
5275 6938 3.952323 TCGTATTCGAGGAGTCAAGGATT 59.048 43.478 0.00 0.00 41.35 3.01
5276 6939 4.401519 TCGTATTCGAGGAGTCAAGGATTT 59.598 41.667 0.00 0.00 41.35 2.17
5277 6940 4.504461 CGTATTCGAGGAGTCAAGGATTTG 59.496 45.833 0.00 0.00 39.71 2.32
5278 6941 2.386661 TCGAGGAGTCAAGGATTTGC 57.613 50.000 0.00 0.00 34.21 3.68
5279 6942 1.902508 TCGAGGAGTCAAGGATTTGCT 59.097 47.619 0.00 0.00 34.21 3.91
5280 6943 2.005451 CGAGGAGTCAAGGATTTGCTG 58.995 52.381 0.00 0.00 34.21 4.41
5281 6944 2.363683 GAGGAGTCAAGGATTTGCTGG 58.636 52.381 0.00 0.00 34.21 4.85
5282 6945 1.005215 AGGAGTCAAGGATTTGCTGGG 59.995 52.381 0.00 0.00 34.21 4.45
5283 6946 1.004745 GGAGTCAAGGATTTGCTGGGA 59.995 52.381 0.00 0.00 34.21 4.37
5284 6947 2.555227 GGAGTCAAGGATTTGCTGGGAA 60.555 50.000 0.00 0.00 34.21 3.97
5285 6948 3.359950 GAGTCAAGGATTTGCTGGGAAT 58.640 45.455 0.00 0.00 34.21 3.01
5286 6949 3.766051 GAGTCAAGGATTTGCTGGGAATT 59.234 43.478 0.00 0.00 34.21 2.17
5287 6950 3.766051 AGTCAAGGATTTGCTGGGAATTC 59.234 43.478 0.00 0.00 34.21 2.17
5292 6955 4.355549 AGGATTTGCTGGGAATTCATTCA 58.644 39.130 7.93 1.80 38.53 2.57
5385 7048 4.803452 TGAATTGGGAATAGAATGGACCC 58.197 43.478 0.00 0.00 40.79 4.46
5399 7062 1.345089 TGGACCCAAAGACGATCGAAA 59.655 47.619 24.34 0.00 0.00 3.46
5442 7105 9.431887 GTGGATGAGCCTTTCGTAAAATATATA 57.568 33.333 0.00 0.00 37.63 0.86
5467 7130 6.352729 GCAAACTGCAAAGATGATGGGACA 62.353 45.833 0.00 0.00 44.26 4.02
5482 7145 4.131649 TGGGACATGTAATACTGGAACG 57.868 45.455 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.675408 CGTCTTCTCGATCCAACTCATCAA 60.675 45.833 0.00 0.00 0.00 2.57
1 2 3.181496 CGTCTTCTCGATCCAACTCATCA 60.181 47.826 0.00 0.00 0.00 3.07
2 3 3.181495 ACGTCTTCTCGATCCAACTCATC 60.181 47.826 0.00 0.00 34.70 2.92
3 4 2.755655 ACGTCTTCTCGATCCAACTCAT 59.244 45.455 0.00 0.00 34.70 2.90
4 5 2.160205 ACGTCTTCTCGATCCAACTCA 58.840 47.619 0.00 0.00 34.70 3.41
5 6 2.923605 ACGTCTTCTCGATCCAACTC 57.076 50.000 0.00 0.00 34.70 3.01
6 7 2.414293 CGAACGTCTTCTCGATCCAACT 60.414 50.000 1.14 0.00 37.23 3.16
7 8 1.912110 CGAACGTCTTCTCGATCCAAC 59.088 52.381 1.14 0.00 37.23 3.77
8 9 1.808343 TCGAACGTCTTCTCGATCCAA 59.192 47.619 5.99 0.00 39.07 3.53
9 10 1.129998 GTCGAACGTCTTCTCGATCCA 59.870 52.381 12.67 0.00 45.08 3.41
10 11 1.397692 AGTCGAACGTCTTCTCGATCC 59.602 52.381 12.67 2.29 45.08 3.36
11 12 2.810028 AGTCGAACGTCTTCTCGATC 57.190 50.000 12.67 7.37 45.08 3.69
12 13 2.998670 TGTAGTCGAACGTCTTCTCGAT 59.001 45.455 12.67 5.71 45.08 3.59
13 14 2.407090 TGTAGTCGAACGTCTTCTCGA 58.593 47.619 5.99 5.99 41.54 4.04
14 15 2.869358 TGTAGTCGAACGTCTTCTCG 57.131 50.000 0.97 0.97 36.39 4.04
15 16 4.337985 TGATGTAGTCGAACGTCTTCTC 57.662 45.455 10.09 0.00 36.53 2.87
16 17 4.474113 GTTGATGTAGTCGAACGTCTTCT 58.526 43.478 10.09 0.00 36.53 2.85
17 18 3.607209 GGTTGATGTAGTCGAACGTCTTC 59.393 47.826 10.09 4.37 36.53 2.87
18 19 3.572584 GGTTGATGTAGTCGAACGTCTT 58.427 45.455 10.09 0.00 36.53 3.01
19 20 2.413765 CGGTTGATGTAGTCGAACGTCT 60.414 50.000 10.09 0.00 44.71 4.18
20 21 1.909532 CGGTTGATGTAGTCGAACGTC 59.090 52.381 3.01 3.01 44.71 4.34
21 22 1.973138 CGGTTGATGTAGTCGAACGT 58.027 50.000 0.00 0.00 44.71 3.99
23 24 0.638746 CGCGGTTGATGTAGTCGAAC 59.361 55.000 0.00 0.00 0.00 3.95
24 25 0.241749 ACGCGGTTGATGTAGTCGAA 59.758 50.000 12.47 0.00 0.00 3.71
25 26 0.241749 AACGCGGTTGATGTAGTCGA 59.758 50.000 12.47 0.00 0.00 4.20
26 27 1.898938 TAACGCGGTTGATGTAGTCG 58.101 50.000 12.47 0.00 0.00 4.18
27 28 2.028883 GCTTAACGCGGTTGATGTAGTC 59.971 50.000 12.47 0.00 0.00 2.59
28 29 1.997606 GCTTAACGCGGTTGATGTAGT 59.002 47.619 12.47 0.00 0.00 2.73
29 30 2.268298 AGCTTAACGCGGTTGATGTAG 58.732 47.619 12.47 0.00 45.59 2.74
30 31 2.373540 AGCTTAACGCGGTTGATGTA 57.626 45.000 12.47 0.00 45.59 2.29
31 32 2.373540 TAGCTTAACGCGGTTGATGT 57.626 45.000 12.47 0.00 45.59 3.06
32 33 3.034406 GTTAGCTTAACGCGGTTGATG 57.966 47.619 12.47 0.00 45.59 3.07
58 59 1.226603 CCCTCGTAGACCGAAAGCG 60.227 63.158 0.00 0.00 46.75 4.68
59 60 1.098050 TACCCTCGTAGACCGAAAGC 58.902 55.000 0.00 0.00 46.75 3.51
60 61 1.063174 CGTACCCTCGTAGACCGAAAG 59.937 57.143 0.00 0.00 46.75 2.62
61 62 1.086696 CGTACCCTCGTAGACCGAAA 58.913 55.000 0.00 0.00 46.75 3.46
62 63 0.036388 ACGTACCCTCGTAGACCGAA 60.036 55.000 0.00 0.00 46.75 4.30
63 64 0.740868 CACGTACCCTCGTAGACCGA 60.741 60.000 0.00 0.00 45.00 4.69
64 65 1.709147 CCACGTACCCTCGTAGACCG 61.709 65.000 0.00 0.00 42.27 4.79
65 66 0.392998 TCCACGTACCCTCGTAGACC 60.393 60.000 0.00 0.00 42.27 3.85
66 67 0.729690 GTCCACGTACCCTCGTAGAC 59.270 60.000 0.00 2.79 42.50 2.59
67 68 0.324614 TGTCCACGTACCCTCGTAGA 59.675 55.000 0.00 0.00 42.27 2.59
68 69 0.449388 GTGTCCACGTACCCTCGTAG 59.551 60.000 0.00 0.00 42.27 3.51
69 70 0.250684 TGTGTCCACGTACCCTCGTA 60.251 55.000 0.00 0.00 42.27 3.43
70 71 1.529010 TGTGTCCACGTACCCTCGT 60.529 57.895 0.00 0.00 45.10 4.18
71 72 1.080974 GTGTGTCCACGTACCCTCG 60.081 63.158 0.00 0.00 0.00 4.63
72 73 0.243095 GAGTGTGTCCACGTACCCTC 59.757 60.000 0.00 0.00 46.56 4.30
73 74 0.178970 AGAGTGTGTCCACGTACCCT 60.179 55.000 0.00 0.00 46.56 4.34
74 75 0.243095 GAGAGTGTGTCCACGTACCC 59.757 60.000 0.00 0.00 46.56 3.69
75 76 0.243095 GGAGAGTGTGTCCACGTACC 59.757 60.000 0.00 0.00 46.56 3.34
76 77 0.243095 GGGAGAGTGTGTCCACGTAC 59.757 60.000 0.00 0.00 46.56 3.67
77 78 0.896940 GGGGAGAGTGTGTCCACGTA 60.897 60.000 0.00 0.00 46.56 3.57
78 79 2.207924 GGGGAGAGTGTGTCCACGT 61.208 63.158 0.00 0.00 46.56 4.49
79 80 2.657237 GGGGAGAGTGTGTCCACG 59.343 66.667 0.00 0.00 46.56 4.94
80 81 1.536662 AGGGGGAGAGTGTGTCCAC 60.537 63.158 0.00 0.00 42.17 4.02
81 82 1.229209 GAGGGGGAGAGTGTGTCCA 60.229 63.158 0.00 0.00 35.57 4.02
82 83 0.973496 GAGAGGGGGAGAGTGTGTCC 60.973 65.000 0.00 0.00 0.00 4.02
83 84 1.316706 CGAGAGGGGGAGAGTGTGTC 61.317 65.000 0.00 0.00 0.00 3.67
84 85 1.304547 CGAGAGGGGGAGAGTGTGT 60.305 63.158 0.00 0.00 0.00 3.72
85 86 0.900647 AACGAGAGGGGGAGAGTGTG 60.901 60.000 0.00 0.00 0.00 3.82
86 87 0.900647 CAACGAGAGGGGGAGAGTGT 60.901 60.000 0.00 0.00 0.00 3.55
87 88 1.893786 CAACGAGAGGGGGAGAGTG 59.106 63.158 0.00 0.00 0.00 3.51
88 89 1.985116 GCAACGAGAGGGGGAGAGT 60.985 63.158 0.00 0.00 0.00 3.24
89 90 0.395862 TAGCAACGAGAGGGGGAGAG 60.396 60.000 0.00 0.00 0.00 3.20
90 91 0.261991 ATAGCAACGAGAGGGGGAGA 59.738 55.000 0.00 0.00 0.00 3.71
91 92 0.390860 CATAGCAACGAGAGGGGGAG 59.609 60.000 0.00 0.00 0.00 4.30
92 93 1.686325 GCATAGCAACGAGAGGGGGA 61.686 60.000 0.00 0.00 0.00 4.81
93 94 1.227674 GCATAGCAACGAGAGGGGG 60.228 63.158 0.00 0.00 0.00 5.40
94 95 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
95 96 1.069823 AGATGCATAGCAACGAGAGGG 59.930 52.381 0.00 0.00 43.62 4.30
96 97 2.402305 GAGATGCATAGCAACGAGAGG 58.598 52.381 0.00 0.00 43.62 3.69
97 98 2.035704 AGGAGATGCATAGCAACGAGAG 59.964 50.000 0.00 0.00 43.62 3.20
98 99 2.034878 AGGAGATGCATAGCAACGAGA 58.965 47.619 0.00 0.00 43.62 4.04
99 100 2.522836 AGGAGATGCATAGCAACGAG 57.477 50.000 0.00 0.00 43.62 4.18
100 101 3.222603 TCTAGGAGATGCATAGCAACGA 58.777 45.455 0.00 0.00 43.62 3.85
101 102 3.650070 TCTAGGAGATGCATAGCAACG 57.350 47.619 0.00 0.00 43.62 4.10
102 103 6.522625 TCTATCTAGGAGATGCATAGCAAC 57.477 41.667 0.00 0.00 43.62 4.17
103 104 7.124721 AGATCTATCTAGGAGATGCATAGCAA 58.875 38.462 0.00 0.00 37.47 3.91
104 105 6.671605 AGATCTATCTAGGAGATGCATAGCA 58.328 40.000 0.00 0.00 38.03 3.49
105 106 7.428020 CAAGATCTATCTAGGAGATGCATAGC 58.572 42.308 0.00 0.00 35.37 2.97
106 107 7.428020 GCAAGATCTATCTAGGAGATGCATAG 58.572 42.308 0.00 0.00 35.37 2.23
107 108 6.039159 CGCAAGATCTATCTAGGAGATGCATA 59.961 42.308 0.00 0.00 35.65 3.14
108 109 5.163530 CGCAAGATCTATCTAGGAGATGCAT 60.164 44.000 0.00 0.00 35.65 3.96
109 110 4.157472 CGCAAGATCTATCTAGGAGATGCA 59.843 45.833 11.48 0.00 35.65 3.96
110 111 4.157656 ACGCAAGATCTATCTAGGAGATGC 59.842 45.833 11.48 9.81 36.70 3.91
111 112 5.414144 TCACGCAAGATCTATCTAGGAGATG 59.586 44.000 11.48 2.82 36.70 2.90
112 113 5.565509 TCACGCAAGATCTATCTAGGAGAT 58.434 41.667 0.00 7.55 38.77 2.75
113 114 4.974399 TCACGCAAGATCTATCTAGGAGA 58.026 43.478 0.00 0.00 43.62 3.71
114 115 4.379394 GCTCACGCAAGATCTATCTAGGAG 60.379 50.000 0.00 0.94 43.62 3.69
115 116 3.504134 GCTCACGCAAGATCTATCTAGGA 59.496 47.826 0.00 0.00 43.62 2.94
116 117 3.669290 CGCTCACGCAAGATCTATCTAGG 60.669 52.174 0.00 0.00 43.62 3.02
117 118 3.058570 ACGCTCACGCAAGATCTATCTAG 60.059 47.826 0.00 0.00 45.53 2.43
118 119 2.879026 ACGCTCACGCAAGATCTATCTA 59.121 45.455 0.00 0.00 45.53 1.98
119 120 1.678627 ACGCTCACGCAAGATCTATCT 59.321 47.619 0.00 0.00 45.53 1.98
120 121 2.126914 ACGCTCACGCAAGATCTATC 57.873 50.000 0.00 0.00 45.53 2.08
121 122 2.030717 CCTACGCTCACGCAAGATCTAT 60.031 50.000 0.00 0.00 45.53 1.98
122 123 1.333931 CCTACGCTCACGCAAGATCTA 59.666 52.381 0.00 0.00 45.53 1.98
123 124 0.101399 CCTACGCTCACGCAAGATCT 59.899 55.000 0.00 0.00 45.53 2.75
124 125 0.100682 TCCTACGCTCACGCAAGATC 59.899 55.000 0.00 0.00 45.53 2.75
125 126 0.530744 TTCCTACGCTCACGCAAGAT 59.469 50.000 0.00 0.00 45.53 2.40
126 127 0.530744 ATTCCTACGCTCACGCAAGA 59.469 50.000 0.00 0.00 45.53 3.02
127 128 1.359848 AATTCCTACGCTCACGCAAG 58.640 50.000 0.00 0.00 45.53 4.01
128 129 1.803334 AAATTCCTACGCTCACGCAA 58.197 45.000 0.00 0.00 45.53 4.85
129 130 1.803334 AAAATTCCTACGCTCACGCA 58.197 45.000 0.00 0.00 45.53 5.24
130 131 2.894307 AAAAATTCCTACGCTCACGC 57.106 45.000 0.00 0.00 45.53 5.34
148 149 7.308469 GGGAAACATAGCATGCAATTTCAAAAA 60.308 33.333 21.98 0.00 29.42 1.94
149 150 6.149142 GGGAAACATAGCATGCAATTTCAAAA 59.851 34.615 21.98 0.00 29.42 2.44
150 151 5.642919 GGGAAACATAGCATGCAATTTCAAA 59.357 36.000 21.98 0.00 29.42 2.69
151 152 5.177326 GGGAAACATAGCATGCAATTTCAA 58.823 37.500 21.98 0.00 29.42 2.69
152 153 4.222366 TGGGAAACATAGCATGCAATTTCA 59.778 37.500 21.98 6.82 29.42 2.69
153 154 4.757594 TGGGAAACATAGCATGCAATTTC 58.242 39.130 21.98 20.39 0.00 2.17
154 155 4.822685 TGGGAAACATAGCATGCAATTT 57.177 36.364 21.98 13.67 0.00 1.82
155 156 4.020396 TGTTGGGAAACATAGCATGCAATT 60.020 37.500 21.98 6.80 0.00 2.32
156 157 3.514706 TGTTGGGAAACATAGCATGCAAT 59.485 39.130 21.98 1.90 0.00 3.56
157 158 2.896044 TGTTGGGAAACATAGCATGCAA 59.104 40.909 21.98 0.00 0.00 4.08
158 159 2.492881 CTGTTGGGAAACATAGCATGCA 59.507 45.455 21.98 6.36 31.47 3.96
159 160 2.159198 CCTGTTGGGAAACATAGCATGC 60.159 50.000 10.51 10.51 37.23 4.06
160 161 3.091545 ACCTGTTGGGAAACATAGCATG 58.908 45.455 0.00 0.00 38.76 4.06
161 162 3.456380 ACCTGTTGGGAAACATAGCAT 57.544 42.857 0.00 0.00 38.76 3.79
162 163 2.969821 ACCTGTTGGGAAACATAGCA 57.030 45.000 0.00 0.00 38.76 3.49
163 164 3.860754 GCAAACCTGTTGGGAAACATAGC 60.861 47.826 0.00 0.00 38.76 2.97
164 165 3.573967 AGCAAACCTGTTGGGAAACATAG 59.426 43.478 0.00 0.00 38.76 2.23
165 166 3.571590 AGCAAACCTGTTGGGAAACATA 58.428 40.909 0.00 0.00 38.76 2.29
166 167 2.397597 AGCAAACCTGTTGGGAAACAT 58.602 42.857 0.00 0.00 38.76 2.71
167 168 1.859302 AGCAAACCTGTTGGGAAACA 58.141 45.000 0.00 0.00 38.76 2.83
168 169 2.093711 ACAAGCAAACCTGTTGGGAAAC 60.094 45.455 0.00 0.00 38.76 2.78
169 170 2.093764 CACAAGCAAACCTGTTGGGAAA 60.094 45.455 0.00 0.00 38.76 3.13
170 171 1.480137 CACAAGCAAACCTGTTGGGAA 59.520 47.619 0.00 0.00 38.76 3.97
171 172 1.110442 CACAAGCAAACCTGTTGGGA 58.890 50.000 0.00 0.00 38.76 4.37
172 173 0.104671 CCACAAGCAAACCTGTTGGG 59.895 55.000 0.00 0.00 41.89 4.12
173 174 1.067516 CTCCACAAGCAAACCTGTTGG 59.932 52.381 0.00 0.00 39.83 3.77
174 175 2.023673 TCTCCACAAGCAAACCTGTTG 58.976 47.619 0.00 0.00 0.00 3.33
175 176 2.301346 CTCTCCACAAGCAAACCTGTT 58.699 47.619 0.00 0.00 0.00 3.16
176 177 1.212935 ACTCTCCACAAGCAAACCTGT 59.787 47.619 0.00 0.00 0.00 4.00
177 178 1.605710 CACTCTCCACAAGCAAACCTG 59.394 52.381 0.00 0.00 0.00 4.00
178 179 1.477558 CCACTCTCCACAAGCAAACCT 60.478 52.381 0.00 0.00 0.00 3.50
179 180 0.954452 CCACTCTCCACAAGCAAACC 59.046 55.000 0.00 0.00 0.00 3.27
180 181 1.604278 GTCCACTCTCCACAAGCAAAC 59.396 52.381 0.00 0.00 0.00 2.93
181 182 1.490490 AGTCCACTCTCCACAAGCAAA 59.510 47.619 0.00 0.00 0.00 3.68
182 183 1.070758 GAGTCCACTCTCCACAAGCAA 59.929 52.381 0.00 0.00 39.81 3.91
183 184 0.681733 GAGTCCACTCTCCACAAGCA 59.318 55.000 0.00 0.00 39.81 3.91
184 185 0.389166 CGAGTCCACTCTCCACAAGC 60.389 60.000 5.21 0.00 40.75 4.01
185 186 0.389166 GCGAGTCCACTCTCCACAAG 60.389 60.000 5.21 0.00 40.75 3.16
186 187 1.112916 TGCGAGTCCACTCTCCACAA 61.113 55.000 5.21 0.00 40.75 3.33
187 188 1.527433 CTGCGAGTCCACTCTCCACA 61.527 60.000 5.21 0.00 40.75 4.17
188 189 1.214062 CTGCGAGTCCACTCTCCAC 59.786 63.158 5.21 0.00 40.75 4.02
189 190 2.640302 GCTGCGAGTCCACTCTCCA 61.640 63.158 5.21 1.87 40.75 3.86
190 191 2.183046 GCTGCGAGTCCACTCTCC 59.817 66.667 5.21 0.00 40.75 3.71
191 192 2.202544 CGCTGCGAGTCCACTCTC 60.203 66.667 18.66 0.00 40.75 3.20
192 193 4.427661 GCGCTGCGAGTCCACTCT 62.428 66.667 28.07 0.00 40.75 3.24
207 208 4.695231 AAGTCCACCGTCGACGCG 62.695 66.667 31.73 25.16 38.18 6.01
247 248 0.620556 CCCCTAGACATGCAACTGGT 59.379 55.000 0.00 0.00 0.00 4.00
249 250 1.134280 CCTCCCCTAGACATGCAACTG 60.134 57.143 0.00 0.00 0.00 3.16
290 291 1.122019 ACAACTCGTCTCTGGCCCTT 61.122 55.000 0.00 0.00 0.00 3.95
311 312 0.878523 TTGCAAGTTCACCCTCGACG 60.879 55.000 0.00 0.00 0.00 5.12
360 361 1.340889 CACAAGTTCACCCCCAACATG 59.659 52.381 0.00 0.00 0.00 3.21
384 385 3.552604 TTTTGCACGCCTTTCTATCAC 57.447 42.857 0.00 0.00 0.00 3.06
388 389 5.636837 GATTGTATTTTGCACGCCTTTCTA 58.363 37.500 0.00 0.00 0.00 2.10
397 398 5.484173 TCTCCATCGATTGTATTTTGCAC 57.516 39.130 0.00 0.00 0.00 4.57
414 415 7.069578 AGAGAAGTAACTACAAGTGTTTCTCCA 59.930 37.037 13.73 0.00 38.78 3.86
461 471 1.697432 CAGGGTCAGTAGGGTTGTCAA 59.303 52.381 0.00 0.00 0.00 3.18
468 478 2.537143 ACTACAACAGGGTCAGTAGGG 58.463 52.381 0.00 0.00 38.54 3.53
474 484 2.884012 CAATGCAACTACAACAGGGTCA 59.116 45.455 0.00 0.00 0.00 4.02
480 490 3.146066 GACTCCCAATGCAACTACAACA 58.854 45.455 0.00 0.00 0.00 3.33
481 491 3.146066 TGACTCCCAATGCAACTACAAC 58.854 45.455 0.00 0.00 0.00 3.32
489 499 1.546923 CTGCAAATGACTCCCAATGCA 59.453 47.619 0.00 0.00 44.23 3.96
490 500 1.547372 ACTGCAAATGACTCCCAATGC 59.453 47.619 0.00 0.00 40.18 3.56
512 522 5.189659 TGCAACTGTAAATGTTGTAACCC 57.810 39.130 8.15 0.00 44.54 4.11
527 537 3.259207 GCAACACTAGACTTGCAACTG 57.741 47.619 18.40 0.00 42.05 3.16
571 581 3.443681 GTCCCAACATGAACTTGGTATGG 59.556 47.826 11.46 0.00 37.10 2.74
573 583 3.075283 TGGTCCCAACATGAACTTGGTAT 59.925 43.478 11.46 0.00 37.10 2.73
585 599 0.184692 TCAACTGCATGGTCCCAACA 59.815 50.000 0.00 0.00 0.00 3.33
594 608 2.663879 GCAACTCGACTTCAACTGCATG 60.664 50.000 0.00 0.00 0.00 4.06
638 652 2.440409 GGTCAGTTCATGCTCAACCAT 58.560 47.619 0.00 0.00 0.00 3.55
643 657 0.678950 TGTCGGTCAGTTCATGCTCA 59.321 50.000 0.00 0.00 0.00 4.26
646 660 0.517316 GGTTGTCGGTCAGTTCATGC 59.483 55.000 0.00 0.00 0.00 4.06
656 670 0.541764 TTACGTAGGGGGTTGTCGGT 60.542 55.000 0.00 0.00 0.00 4.69
676 690 1.375523 GTGTCTGTAACTGGGCCGG 60.376 63.158 11.83 11.83 0.00 6.13
691 705 4.082245 GCAACTACATGGGCTTTTATGTGT 60.082 41.667 0.00 0.00 37.98 3.72
757 771 3.161866 AGTGGTGTCGGCCAATTTAAAT 58.838 40.909 2.24 0.00 40.68 1.40
924 2314 1.115467 CTCCCTCAGCGTGGTATTCT 58.885 55.000 0.00 0.00 0.00 2.40
996 2386 2.124151 GGCCCTTGCGTCATGGAT 60.124 61.111 11.56 0.00 38.85 3.41
1389 2783 3.232213 AGTAGTGTGCGGTGTCTAATG 57.768 47.619 0.00 0.00 0.00 1.90
1399 2793 0.800631 TGACCGAGTAGTAGTGTGCG 59.199 55.000 0.00 0.00 0.00 5.34
1503 2897 6.670695 ATGGTTGGCAAGTCTAAGAAAAAT 57.329 33.333 0.00 0.00 0.00 1.82
1506 2900 4.892934 ACAATGGTTGGCAAGTCTAAGAAA 59.107 37.500 0.00 0.00 34.12 2.52
1509 2903 4.425577 GACAATGGTTGGCAAGTCTAAG 57.574 45.455 0.00 0.00 38.99 2.18
1529 2923 5.725325 TTTGATGCCAATCTTTGACATGA 57.275 34.783 0.00 0.00 33.73 3.07
1539 2933 6.985117 TGAGGCTAATAATTTGATGCCAATC 58.015 36.000 12.49 5.36 42.46 2.67
1577 2972 6.053650 TGGATCAGAATATTTGAGCTCACTG 58.946 40.000 18.03 18.53 31.89 3.66
1673 3068 9.912634 CAAAGTAAGTGATGATAACAACCAAAT 57.087 29.630 0.00 0.00 0.00 2.32
1690 3085 9.482627 GTAGCAGCTGATAATATCAAAGTAAGT 57.517 33.333 20.43 0.00 39.11 2.24
1691 3086 9.703892 AGTAGCAGCTGATAATATCAAAGTAAG 57.296 33.333 20.43 0.00 39.11 2.34
1692 3087 9.698309 GAGTAGCAGCTGATAATATCAAAGTAA 57.302 33.333 20.43 0.00 39.11 2.24
1693 3088 9.083422 AGAGTAGCAGCTGATAATATCAAAGTA 57.917 33.333 20.43 0.00 39.11 2.24
1801 3200 2.620112 ATTGAGCACACACGCAGCC 61.620 57.895 0.00 0.00 0.00 4.85
1837 3236 0.449388 CAGGAAAACGAGATGCCAGC 59.551 55.000 0.00 0.00 0.00 4.85
1927 3326 7.013559 CCAATATGGTAATCAAGCATCAACTGA 59.986 37.037 0.00 0.00 42.70 3.41
2423 3822 1.885887 CCACATCAAATCCAACACGGT 59.114 47.619 0.00 0.00 35.57 4.83
2502 3901 4.485163 GCATAAATGGTGACCAGTTTGAC 58.515 43.478 22.97 8.56 38.77 3.18
2649 4048 7.229106 CAGAGGGAGTACTTAAGGTGATAGTAC 59.771 44.444 7.53 0.00 42.78 2.73
2699 4098 0.961019 TTGCACCCTGTCTGAAATGC 59.039 50.000 0.00 0.00 0.00 3.56
2745 4144 5.246656 TCCCTCCGTTCACTTTTATAAGTCA 59.753 40.000 0.00 0.00 42.67 3.41
2943 4342 6.258230 TGGTTTGCATGATAGTGAAAAGAG 57.742 37.500 0.00 0.00 27.40 2.85
3328 4731 6.289064 AGAAAATATTGAAGGTAGTAGGCCG 58.711 40.000 0.00 0.00 0.00 6.13
3412 4815 1.153269 GAGGCCAGCTAAGACTGCC 60.153 63.158 5.01 0.00 36.29 4.85
3721 5125 9.750783 ATGATGAAGGCAATAGAATAGCTAAAT 57.249 29.630 0.00 0.00 31.66 1.40
3792 5196 1.538047 AAATGCACTTGCCTGTCGAT 58.462 45.000 0.00 0.00 41.18 3.59
3801 5205 7.864379 ACTACAGATTGAAAGAAAATGCACTTG 59.136 33.333 0.00 0.00 0.00 3.16
3821 5225 8.618677 TGATCTCTTATTTGGTACGTACTACAG 58.381 37.037 24.07 11.78 0.00 2.74
3913 5317 8.918116 AGACTCTGATTCATGTAATAGCTAACA 58.082 33.333 0.00 0.00 0.00 2.41
3962 5366 0.744057 CATGACAGTACATGGCCGCA 60.744 55.000 0.00 0.00 42.45 5.69
3974 5378 3.181461 GGATTGGAGGGAGTACATGACAG 60.181 52.174 0.00 0.00 0.00 3.51
4060 5466 5.046159 ACAATGTTAGAAGAACCACCCGATA 60.046 40.000 0.00 0.00 0.00 2.92
4266 5672 4.134563 CAAACAGGGCAAACTACTACAGT 58.865 43.478 0.00 0.00 40.05 3.55
4315 5724 3.007182 AGCTGCAAACAAAGTGCCATTAT 59.993 39.130 1.02 0.00 41.49 1.28
4356 5765 7.652727 CGATGAGACTAAGGATGACAAATCTA 58.347 38.462 0.00 0.00 0.00 1.98
4383 5792 4.471025 CCATATCCAGCATATACTCCCACA 59.529 45.833 0.00 0.00 0.00 4.17
4389 5798 6.954102 TGTACTGACCATATCCAGCATATACT 59.046 38.462 0.00 0.00 33.90 2.12
4425 5834 2.015587 GACGAGTGGTCCGAAGTAGAT 58.984 52.381 0.00 0.00 39.90 1.98
4550 5959 5.250200 CAGCAATACAGGTAAAGGGTTACA 58.750 41.667 0.00 0.00 41.31 2.41
4573 5982 2.724349 CGTACTACACATACGGCTTCC 58.276 52.381 0.00 0.00 41.33 3.46
4610 6019 9.212641 CCTCCAAAATATCATACAGATGTACAG 57.787 37.037 0.33 0.00 37.57 2.74
4692 6101 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4704 6113 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4705 6114 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4706 6115 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4707 6116 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4708 6117 0.167908 GGTGTGTGTGTGTGTGTGTG 59.832 55.000 0.00 0.00 0.00 3.82
4709 6118 0.250510 TGGTGTGTGTGTGTGTGTGT 60.251 50.000 0.00 0.00 0.00 3.72
4710 6119 0.877743 TTGGTGTGTGTGTGTGTGTG 59.122 50.000 0.00 0.00 0.00 3.82
4711 6120 1.539388 CTTTGGTGTGTGTGTGTGTGT 59.461 47.619 0.00 0.00 0.00 3.72
4712 6121 1.809547 TCTTTGGTGTGTGTGTGTGTG 59.190 47.619 0.00 0.00 0.00 3.82
4713 6122 2.192664 TCTTTGGTGTGTGTGTGTGT 57.807 45.000 0.00 0.00 0.00 3.72
4714 6123 3.128415 TGAATCTTTGGTGTGTGTGTGTG 59.872 43.478 0.00 0.00 0.00 3.82
4715 6124 3.128589 GTGAATCTTTGGTGTGTGTGTGT 59.871 43.478 0.00 0.00 0.00 3.72
4716 6125 3.378112 AGTGAATCTTTGGTGTGTGTGTG 59.622 43.478 0.00 0.00 0.00 3.82
4717 6126 3.620488 AGTGAATCTTTGGTGTGTGTGT 58.380 40.909 0.00 0.00 0.00 3.72
4718 6127 4.353737 CAAGTGAATCTTTGGTGTGTGTG 58.646 43.478 0.00 0.00 33.63 3.82
4719 6128 3.381272 CCAAGTGAATCTTTGGTGTGTGT 59.619 43.478 8.33 0.00 33.63 3.72
4720 6129 3.631686 TCCAAGTGAATCTTTGGTGTGTG 59.368 43.478 13.79 0.00 33.63 3.82
4865 6525 3.253230 GAAACGGCTCCAAAATCATTGG 58.747 45.455 0.71 0.71 40.87 3.16
4900 6561 7.410120 AGAAACTCAAAATCTTGTTCCTGTT 57.590 32.000 0.00 0.00 33.94 3.16
4910 6571 7.721399 ACACCAGATGTAAGAAACTCAAAATCT 59.279 33.333 0.00 0.00 40.88 2.40
4933 6594 2.674380 CAGAGCCCAGCCCAACAC 60.674 66.667 0.00 0.00 0.00 3.32
4966 6627 1.296392 CATTGAGTCGCCCTGTCCA 59.704 57.895 0.00 0.00 0.00 4.02
4967 6628 2.109126 GCATTGAGTCGCCCTGTCC 61.109 63.158 0.00 0.00 0.00 4.02
4969 6630 2.045926 GGCATTGAGTCGCCCTGT 60.046 61.111 0.00 0.00 42.82 4.00
5062 6725 4.862574 TCTCGTCGAAACAATAGTTCCATG 59.137 41.667 0.00 0.00 36.84 3.66
5075 6738 2.206815 TTTCGGTGTTCTCGTCGAAA 57.793 45.000 5.78 5.78 45.34 3.46
5076 6739 2.206815 TTTTCGGTGTTCTCGTCGAA 57.793 45.000 0.00 0.00 39.41 3.71
5077 6740 2.206815 TTTTTCGGTGTTCTCGTCGA 57.793 45.000 0.00 0.00 0.00 4.20
5093 6756 8.092687 TCTTACGTAGAGCTGAATTAGGTTTTT 58.907 33.333 0.00 0.00 37.23 1.94
5094 6757 7.609056 TCTTACGTAGAGCTGAATTAGGTTTT 58.391 34.615 0.00 0.00 37.23 2.43
5095 6758 7.166691 TCTTACGTAGAGCTGAATTAGGTTT 57.833 36.000 0.00 0.00 37.23 3.27
5096 6759 6.770746 TCTTACGTAGAGCTGAATTAGGTT 57.229 37.500 0.00 0.00 37.23 3.50
5097 6760 6.963083 ATCTTACGTAGAGCTGAATTAGGT 57.037 37.500 0.00 0.00 40.52 3.08
5098 6761 7.024768 GCTATCTTACGTAGAGCTGAATTAGG 58.975 42.308 0.00 0.00 36.02 2.69
5099 6762 7.585867 TGCTATCTTACGTAGAGCTGAATTAG 58.414 38.462 16.68 1.25 36.02 1.73
5100 6763 7.506328 TGCTATCTTACGTAGAGCTGAATTA 57.494 36.000 16.68 0.15 36.02 1.40
5101 6764 6.392625 TGCTATCTTACGTAGAGCTGAATT 57.607 37.500 16.68 0.00 36.02 2.17
5102 6765 6.392625 TTGCTATCTTACGTAGAGCTGAAT 57.607 37.500 16.68 3.70 36.02 2.57
5103 6766 5.830000 TTGCTATCTTACGTAGAGCTGAA 57.170 39.130 16.68 6.19 36.02 3.02
5104 6767 5.830000 TTTGCTATCTTACGTAGAGCTGA 57.170 39.130 16.68 5.18 36.02 4.26
5105 6768 6.037098 ACTTTTGCTATCTTACGTAGAGCTG 58.963 40.000 16.68 9.89 36.02 4.24
5106 6769 6.210287 ACTTTTGCTATCTTACGTAGAGCT 57.790 37.500 16.68 0.00 36.02 4.09
5107 6770 6.140422 CGTACTTTTGCTATCTTACGTAGAGC 59.860 42.308 11.67 11.67 36.02 4.09
5108 6771 6.632035 CCGTACTTTTGCTATCTTACGTAGAG 59.368 42.308 0.00 0.00 36.02 2.43
5109 6772 6.094048 ACCGTACTTTTGCTATCTTACGTAGA 59.906 38.462 0.00 0.00 37.28 2.59
5110 6773 6.261118 ACCGTACTTTTGCTATCTTACGTAG 58.739 40.000 0.00 0.00 32.38 3.51
5111 6774 6.194796 ACCGTACTTTTGCTATCTTACGTA 57.805 37.500 0.00 0.00 32.38 3.57
5112 6775 5.064441 ACCGTACTTTTGCTATCTTACGT 57.936 39.130 0.00 0.00 32.38 3.57
5113 6776 5.574055 TCAACCGTACTTTTGCTATCTTACG 59.426 40.000 0.00 0.00 33.71 3.18
5114 6777 6.455246 GCTCAACCGTACTTTTGCTATCTTAC 60.455 42.308 0.00 0.00 0.00 2.34
5115 6778 5.579511 GCTCAACCGTACTTTTGCTATCTTA 59.420 40.000 0.00 0.00 0.00 2.10
5116 6779 4.392138 GCTCAACCGTACTTTTGCTATCTT 59.608 41.667 0.00 0.00 0.00 2.40
5117 6780 3.933332 GCTCAACCGTACTTTTGCTATCT 59.067 43.478 0.00 0.00 0.00 1.98
5118 6781 3.682858 TGCTCAACCGTACTTTTGCTATC 59.317 43.478 0.00 0.00 0.00 2.08
5119 6782 3.670625 TGCTCAACCGTACTTTTGCTAT 58.329 40.909 0.00 0.00 0.00 2.97
5120 6783 3.114668 TGCTCAACCGTACTTTTGCTA 57.885 42.857 0.00 0.00 0.00 3.49
5121 6784 1.961793 TGCTCAACCGTACTTTTGCT 58.038 45.000 0.00 0.00 0.00 3.91
5122 6785 2.766970 TTGCTCAACCGTACTTTTGC 57.233 45.000 0.00 0.00 0.00 3.68
5123 6786 4.481930 TGATTGCTCAACCGTACTTTTG 57.518 40.909 0.00 0.00 0.00 2.44
5134 6797 8.806177 GCAATTATATCATGTTGATTGCTCAA 57.194 30.769 18.69 0.00 43.47 3.02
5138 6801 7.863877 TGTGAGCAATTATATCATGTTGATTGC 59.136 33.333 18.50 18.50 45.77 3.56
5139 6802 9.908152 ATGTGAGCAATTATATCATGTTGATTG 57.092 29.630 0.00 0.17 38.26 2.67
5142 6805 8.570488 GGAATGTGAGCAATTATATCATGTTGA 58.430 33.333 0.00 0.00 0.00 3.18
5143 6806 8.354426 TGGAATGTGAGCAATTATATCATGTTG 58.646 33.333 0.00 0.00 0.00 3.33
5144 6807 8.467963 TGGAATGTGAGCAATTATATCATGTT 57.532 30.769 0.00 0.00 0.00 2.71
5145 6808 7.176165 CCTGGAATGTGAGCAATTATATCATGT 59.824 37.037 0.00 0.00 0.00 3.21
5146 6809 7.535997 CCTGGAATGTGAGCAATTATATCATG 58.464 38.462 0.00 0.00 0.00 3.07
5147 6810 6.152323 GCCTGGAATGTGAGCAATTATATCAT 59.848 38.462 0.00 0.00 0.00 2.45
5148 6811 5.474532 GCCTGGAATGTGAGCAATTATATCA 59.525 40.000 0.00 0.00 0.00 2.15
5149 6812 5.391310 CGCCTGGAATGTGAGCAATTATATC 60.391 44.000 0.00 0.00 0.00 1.63
5150 6813 4.456911 CGCCTGGAATGTGAGCAATTATAT 59.543 41.667 0.00 0.00 0.00 0.86
5151 6814 3.814842 CGCCTGGAATGTGAGCAATTATA 59.185 43.478 0.00 0.00 0.00 0.98
5152 6815 2.620115 CGCCTGGAATGTGAGCAATTAT 59.380 45.455 0.00 0.00 0.00 1.28
5153 6816 2.016318 CGCCTGGAATGTGAGCAATTA 58.984 47.619 0.00 0.00 0.00 1.40
5154 6817 0.813184 CGCCTGGAATGTGAGCAATT 59.187 50.000 0.00 0.00 0.00 2.32
5155 6818 0.035152 TCGCCTGGAATGTGAGCAAT 60.035 50.000 0.00 0.00 0.00 3.56
5156 6819 0.250684 TTCGCCTGGAATGTGAGCAA 60.251 50.000 0.00 0.00 0.00 3.91
5157 6820 0.674581 CTTCGCCTGGAATGTGAGCA 60.675 55.000 0.00 0.00 33.26 4.26
5158 6821 1.372087 CCTTCGCCTGGAATGTGAGC 61.372 60.000 0.00 0.00 33.26 4.26
5159 6822 0.745845 CCCTTCGCCTGGAATGTGAG 60.746 60.000 0.00 0.00 33.26 3.51
5160 6823 1.299648 CCCTTCGCCTGGAATGTGA 59.700 57.895 0.00 0.00 33.26 3.58
5161 6824 2.409870 GCCCTTCGCCTGGAATGTG 61.410 63.158 0.00 0.00 33.26 3.21
5162 6825 2.044946 GCCCTTCGCCTGGAATGT 60.045 61.111 0.00 0.00 33.26 2.71
5163 6826 0.179020 TATGCCCTTCGCCTGGAATG 60.179 55.000 0.00 0.00 36.24 2.67
5164 6827 0.550914 TTATGCCCTTCGCCTGGAAT 59.449 50.000 0.00 0.00 36.24 3.01
5165 6828 0.550914 ATTATGCCCTTCGCCTGGAA 59.449 50.000 0.00 0.00 36.24 3.53
5166 6829 0.550914 AATTATGCCCTTCGCCTGGA 59.449 50.000 0.00 0.00 36.24 3.86
5167 6830 0.954452 GAATTATGCCCTTCGCCTGG 59.046 55.000 0.00 0.00 36.24 4.45
5168 6831 0.588252 CGAATTATGCCCTTCGCCTG 59.412 55.000 0.00 0.00 37.96 4.85
5169 6832 3.006672 CGAATTATGCCCTTCGCCT 57.993 52.632 0.00 0.00 37.96 5.52
5172 6835 0.588252 CCTGCGAATTATGCCCTTCG 59.412 55.000 0.63 0.63 45.27 3.79
5173 6836 1.967319 TCCTGCGAATTATGCCCTTC 58.033 50.000 0.00 0.00 0.00 3.46
5174 6837 2.024414 GTTCCTGCGAATTATGCCCTT 58.976 47.619 0.00 0.00 0.00 3.95
5175 6838 1.064758 TGTTCCTGCGAATTATGCCCT 60.065 47.619 0.00 0.00 0.00 5.19
5176 6839 1.388547 TGTTCCTGCGAATTATGCCC 58.611 50.000 0.00 0.00 0.00 5.36
5177 6840 3.316308 AGAATGTTCCTGCGAATTATGCC 59.684 43.478 0.00 0.00 0.00 4.40
5178 6841 4.558538 AGAATGTTCCTGCGAATTATGC 57.441 40.909 0.00 0.00 0.00 3.14
5179 6842 8.539770 ACTATAGAATGTTCCTGCGAATTATG 57.460 34.615 6.78 0.00 0.00 1.90
5180 6843 8.589338 AGACTATAGAATGTTCCTGCGAATTAT 58.411 33.333 6.78 0.00 0.00 1.28
5181 6844 7.952671 AGACTATAGAATGTTCCTGCGAATTA 58.047 34.615 6.78 0.00 0.00 1.40
5182 6845 6.821388 AGACTATAGAATGTTCCTGCGAATT 58.179 36.000 6.78 0.00 0.00 2.17
5183 6846 6.412362 AGACTATAGAATGTTCCTGCGAAT 57.588 37.500 6.78 0.00 0.00 3.34
5184 6847 5.854010 AGACTATAGAATGTTCCTGCGAA 57.146 39.130 6.78 0.00 0.00 4.70
5185 6848 5.854010 AAGACTATAGAATGTTCCTGCGA 57.146 39.130 6.78 0.00 0.00 5.10
5186 6849 6.740110 ACTAAGACTATAGAATGTTCCTGCG 58.260 40.000 6.78 0.00 0.00 5.18
5187 6850 7.717568 TGACTAAGACTATAGAATGTTCCTGC 58.282 38.462 6.78 0.00 0.00 4.85
5188 6851 9.126151 TCTGACTAAGACTATAGAATGTTCCTG 57.874 37.037 6.78 0.00 0.00 3.86
5189 6852 9.349713 CTCTGACTAAGACTATAGAATGTTCCT 57.650 37.037 6.78 0.00 0.00 3.36
5190 6853 8.573035 CCTCTGACTAAGACTATAGAATGTTCC 58.427 40.741 6.78 0.00 0.00 3.62
5191 6854 9.344772 TCCTCTGACTAAGACTATAGAATGTTC 57.655 37.037 6.78 0.00 0.00 3.18
5192 6855 9.349713 CTCCTCTGACTAAGACTATAGAATGTT 57.650 37.037 6.78 0.00 0.00 2.71
5193 6856 7.942341 CCTCCTCTGACTAAGACTATAGAATGT 59.058 40.741 6.78 0.00 0.00 2.71
5194 6857 7.942341 ACCTCCTCTGACTAAGACTATAGAATG 59.058 40.741 6.78 0.00 0.00 2.67
5195 6858 8.052621 ACCTCCTCTGACTAAGACTATAGAAT 57.947 38.462 6.78 0.00 0.00 2.40
5196 6859 7.454553 ACCTCCTCTGACTAAGACTATAGAA 57.545 40.000 6.78 0.00 0.00 2.10
5197 6860 8.011883 TCTACCTCCTCTGACTAAGACTATAGA 58.988 40.741 6.78 0.00 0.00 1.98
5198 6861 8.197592 TCTACCTCCTCTGACTAAGACTATAG 57.802 42.308 0.00 0.00 0.00 1.31
5199 6862 7.790798 ACTCTACCTCCTCTGACTAAGACTATA 59.209 40.741 0.00 0.00 0.00 1.31
5200 6863 6.618196 ACTCTACCTCCTCTGACTAAGACTAT 59.382 42.308 0.00 0.00 0.00 2.12
5201 6864 5.965705 ACTCTACCTCCTCTGACTAAGACTA 59.034 44.000 0.00 0.00 0.00 2.59
5202 6865 4.786454 ACTCTACCTCCTCTGACTAAGACT 59.214 45.833 0.00 0.00 0.00 3.24
5203 6866 4.879545 CACTCTACCTCCTCTGACTAAGAC 59.120 50.000 0.00 0.00 0.00 3.01
5204 6867 4.783763 TCACTCTACCTCCTCTGACTAAGA 59.216 45.833 0.00 0.00 0.00 2.10
5205 6868 5.105567 TCACTCTACCTCCTCTGACTAAG 57.894 47.826 0.00 0.00 0.00 2.18
5206 6869 5.516059 TTCACTCTACCTCCTCTGACTAA 57.484 43.478 0.00 0.00 0.00 2.24
5207 6870 5.251005 TCTTTCACTCTACCTCCTCTGACTA 59.749 44.000 0.00 0.00 0.00 2.59
5208 6871 4.043561 TCTTTCACTCTACCTCCTCTGACT 59.956 45.833 0.00 0.00 0.00 3.41
5209 6872 4.337145 TCTTTCACTCTACCTCCTCTGAC 58.663 47.826 0.00 0.00 0.00 3.51
5210 6873 4.659529 TCTTTCACTCTACCTCCTCTGA 57.340 45.455 0.00 0.00 0.00 3.27
5211 6874 5.449862 CGAATCTTTCACTCTACCTCCTCTG 60.450 48.000 0.00 0.00 0.00 3.35
5212 6875 4.642885 CGAATCTTTCACTCTACCTCCTCT 59.357 45.833 0.00 0.00 0.00 3.69
5213 6876 4.735283 GCGAATCTTTCACTCTACCTCCTC 60.735 50.000 0.00 0.00 0.00 3.71
5214 6877 3.131400 GCGAATCTTTCACTCTACCTCCT 59.869 47.826 0.00 0.00 0.00 3.69
5215 6878 3.449632 GCGAATCTTTCACTCTACCTCC 58.550 50.000 0.00 0.00 0.00 4.30
5216 6879 3.119101 TGGCGAATCTTTCACTCTACCTC 60.119 47.826 0.00 0.00 0.00 3.85
5217 6880 2.832129 TGGCGAATCTTTCACTCTACCT 59.168 45.455 0.00 0.00 0.00 3.08
5218 6881 3.190874 CTGGCGAATCTTTCACTCTACC 58.809 50.000 0.00 0.00 0.00 3.18
5219 6882 3.190874 CCTGGCGAATCTTTCACTCTAC 58.809 50.000 0.00 0.00 0.00 2.59
5220 6883 2.832129 ACCTGGCGAATCTTTCACTCTA 59.168 45.455 0.00 0.00 0.00 2.43
5221 6884 1.625818 ACCTGGCGAATCTTTCACTCT 59.374 47.619 0.00 0.00 0.00 3.24
5222 6885 1.734465 CACCTGGCGAATCTTTCACTC 59.266 52.381 0.00 0.00 0.00 3.51
5223 6886 1.072331 ACACCTGGCGAATCTTTCACT 59.928 47.619 0.00 0.00 0.00 3.41
5224 6887 1.197721 CACACCTGGCGAATCTTTCAC 59.802 52.381 0.00 0.00 0.00 3.18
5225 6888 1.071542 TCACACCTGGCGAATCTTTCA 59.928 47.619 0.00 0.00 0.00 2.69
5226 6889 1.808411 TCACACCTGGCGAATCTTTC 58.192 50.000 0.00 0.00 0.00 2.62
5227 6890 2.270352 TTCACACCTGGCGAATCTTT 57.730 45.000 0.00 0.00 0.00 2.52
5228 6891 2.270352 TTTCACACCTGGCGAATCTT 57.730 45.000 0.00 0.00 0.00 2.40
5229 6892 2.359900 GATTTCACACCTGGCGAATCT 58.640 47.619 0.00 0.00 0.00 2.40
5230 6893 1.401905 GGATTTCACACCTGGCGAATC 59.598 52.381 0.00 0.00 0.00 2.52
5231 6894 1.463674 GGATTTCACACCTGGCGAAT 58.536 50.000 0.00 0.00 0.00 3.34
5232 6895 0.608035 GGGATTTCACACCTGGCGAA 60.608 55.000 0.00 0.00 0.00 4.70
5233 6896 1.002624 GGGATTTCACACCTGGCGA 60.003 57.895 0.00 0.00 0.00 5.54
5234 6897 0.680921 ATGGGATTTCACACCTGGCG 60.681 55.000 0.00 0.00 28.47 5.69
5235 6898 1.106285 GATGGGATTTCACACCTGGC 58.894 55.000 0.00 0.00 28.47 4.85
5236 6899 1.340017 ACGATGGGATTTCACACCTGG 60.340 52.381 0.00 0.00 28.47 4.45
5237 6900 2.113860 ACGATGGGATTTCACACCTG 57.886 50.000 0.00 0.00 28.47 4.00
5238 6901 4.451900 GAATACGATGGGATTTCACACCT 58.548 43.478 0.00 0.00 28.47 4.00
5239 6902 3.247648 CGAATACGATGGGATTTCACACC 59.752 47.826 0.00 0.00 42.66 4.16
5240 6903 4.116961 TCGAATACGATGGGATTTCACAC 58.883 43.478 0.00 0.00 43.81 3.82
5241 6904 4.394439 TCGAATACGATGGGATTTCACA 57.606 40.909 0.00 0.00 43.81 3.58
5251 6914 8.884751 CAAATCCTTGACTCCTCGAATACGATG 61.885 44.444 0.00 0.00 40.21 3.84
5252 6915 6.956755 CAAATCCTTGACTCCTCGAATACGAT 60.957 42.308 0.00 0.00 40.21 3.73
5253 6916 2.995283 TCCTTGACTCCTCGAATACGA 58.005 47.619 0.00 0.00 46.56 3.43
5254 6917 3.992260 ATCCTTGACTCCTCGAATACG 57.008 47.619 0.00 0.00 41.26 3.06
5255 6918 4.271291 GCAAATCCTTGACTCCTCGAATAC 59.729 45.833 0.00 0.00 34.14 1.89
5256 6919 4.162320 AGCAAATCCTTGACTCCTCGAATA 59.838 41.667 0.00 0.00 34.14 1.75
5257 6920 3.054802 AGCAAATCCTTGACTCCTCGAAT 60.055 43.478 0.00 0.00 34.14 3.34
5258 6921 2.303022 AGCAAATCCTTGACTCCTCGAA 59.697 45.455 0.00 0.00 34.14 3.71
5259 6922 1.902508 AGCAAATCCTTGACTCCTCGA 59.097 47.619 0.00 0.00 34.14 4.04
5260 6923 2.005451 CAGCAAATCCTTGACTCCTCG 58.995 52.381 0.00 0.00 34.14 4.63
5261 6924 2.363683 CCAGCAAATCCTTGACTCCTC 58.636 52.381 0.00 0.00 34.14 3.71
5262 6925 1.005215 CCCAGCAAATCCTTGACTCCT 59.995 52.381 0.00 0.00 34.14 3.69
5263 6926 1.004745 TCCCAGCAAATCCTTGACTCC 59.995 52.381 0.00 0.00 34.14 3.85
5264 6927 2.496899 TCCCAGCAAATCCTTGACTC 57.503 50.000 0.00 0.00 34.14 3.36
5265 6928 2.978156 TTCCCAGCAAATCCTTGACT 57.022 45.000 0.00 0.00 34.14 3.41
5266 6929 3.511146 TGAATTCCCAGCAAATCCTTGAC 59.489 43.478 2.27 0.00 34.14 3.18
5267 6930 3.777087 TGAATTCCCAGCAAATCCTTGA 58.223 40.909 2.27 0.00 34.14 3.02
5268 6931 4.748277 ATGAATTCCCAGCAAATCCTTG 57.252 40.909 2.27 0.00 35.49 3.61
5269 6932 4.778958 TGAATGAATTCCCAGCAAATCCTT 59.221 37.500 2.27 0.00 35.97 3.36
5270 6933 4.355549 TGAATGAATTCCCAGCAAATCCT 58.644 39.130 2.27 0.00 35.97 3.24
5271 6934 4.161001 ACTGAATGAATTCCCAGCAAATCC 59.839 41.667 15.29 0.00 35.97 3.01
5272 6935 5.107133 CACTGAATGAATTCCCAGCAAATC 58.893 41.667 15.29 0.00 35.97 2.17
5273 6936 4.081309 CCACTGAATGAATTCCCAGCAAAT 60.081 41.667 15.29 0.00 35.97 2.32
5274 6937 3.258872 CCACTGAATGAATTCCCAGCAAA 59.741 43.478 15.29 0.00 35.97 3.68
5275 6938 2.827322 CCACTGAATGAATTCCCAGCAA 59.173 45.455 15.29 0.00 35.97 3.91
5276 6939 2.225091 ACCACTGAATGAATTCCCAGCA 60.225 45.455 15.29 4.20 35.97 4.41
5277 6940 2.450476 ACCACTGAATGAATTCCCAGC 58.550 47.619 15.29 0.37 35.97 4.85
5278 6941 3.629398 GCTACCACTGAATGAATTCCCAG 59.371 47.826 14.31 14.31 35.97 4.45
5279 6942 3.266772 AGCTACCACTGAATGAATTCCCA 59.733 43.478 2.27 0.00 35.97 4.37
5280 6943 3.891049 AGCTACCACTGAATGAATTCCC 58.109 45.455 2.27 0.00 35.97 3.97
5281 6944 4.096984 CCAAGCTACCACTGAATGAATTCC 59.903 45.833 2.27 0.00 35.97 3.01
5282 6945 4.702131 ACCAAGCTACCACTGAATGAATTC 59.298 41.667 0.00 0.00 37.31 2.17
5283 6946 4.460382 CACCAAGCTACCACTGAATGAATT 59.540 41.667 0.00 0.00 0.00 2.17
5284 6947 4.012374 CACCAAGCTACCACTGAATGAAT 58.988 43.478 0.00 0.00 0.00 2.57
5285 6948 3.181445 ACACCAAGCTACCACTGAATGAA 60.181 43.478 0.00 0.00 0.00 2.57
5286 6949 2.371841 ACACCAAGCTACCACTGAATGA 59.628 45.455 0.00 0.00 0.00 2.57
5287 6950 2.485426 CACACCAAGCTACCACTGAATG 59.515 50.000 0.00 0.00 0.00 2.67
5292 6955 0.535102 GTGCACACCAAGCTACCACT 60.535 55.000 13.17 0.00 0.00 4.00
5336 6999 3.003113 GCGCTTCAGGTCCTACCGT 62.003 63.158 0.00 0.00 44.90 4.83
5385 7048 7.836358 TTTTCAAGAATTTCGATCGTCTTTG 57.164 32.000 15.94 11.81 0.00 2.77
5386 7049 8.342634 TCTTTTTCAAGAATTTCGATCGTCTTT 58.657 29.630 15.94 6.93 35.99 2.52
5399 7062 5.771666 TCATCCACAGCTCTTTTTCAAGAAT 59.228 36.000 0.00 0.00 38.63 2.40
5452 7115 7.040892 CCAGTATTACATGTCCCATCATCTTTG 60.041 40.741 0.00 0.00 0.00 2.77
5453 7116 7.000472 CCAGTATTACATGTCCCATCATCTTT 59.000 38.462 0.00 0.00 0.00 2.52
5456 7119 6.114187 TCCAGTATTACATGTCCCATCATC 57.886 41.667 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.