Multiple sequence alignment - TraesCS6D01G226500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G226500 chr6D 100.000 4395 0 0 1 4395 318084505 318088899 0.000000e+00 8117.0
1 TraesCS6D01G226500 chr6D 88.200 822 50 16 1955 2768 294414261 294413479 0.000000e+00 937.0
2 TraesCS6D01G226500 chr6D 95.400 413 19 0 3017 3429 294413475 294413063 0.000000e+00 658.0
3 TraesCS6D01G226500 chr6D 90.698 430 18 6 1317 1743 294414687 294414277 1.790000e-153 553.0
4 TraesCS6D01G226500 chr6D 91.667 360 17 7 935 1294 294423665 294423319 1.840000e-133 486.0
5 TraesCS6D01G226500 chr6D 82.514 366 45 11 3826 4178 294409068 294408709 1.990000e-78 303.0
6 TraesCS6D01G226500 chr6D 100.000 50 0 0 1797 1846 459928162 459928211 4.680000e-15 93.5
7 TraesCS6D01G226500 chr6D 81.061 132 7 13 3491 3621 294412506 294412392 6.050000e-14 89.8
8 TraesCS6D01G226500 chr6A 87.500 1632 119 41 2752 4347 455645924 455647506 0.000000e+00 1805.0
9 TraesCS6D01G226500 chr6A 87.500 1632 119 41 2752 4347 455653072 455654654 0.000000e+00 1805.0
10 TraesCS6D01G226500 chr6A 92.123 1168 43 11 531 1680 455644117 455645253 0.000000e+00 1602.0
11 TraesCS6D01G226500 chr6A 92.182 1164 42 11 535 1680 455651269 455652401 0.000000e+00 1600.0
12 TraesCS6D01G226500 chr6A 89.916 595 38 9 1952 2540 455645283 455645861 0.000000e+00 747.0
13 TraesCS6D01G226500 chr6A 89.916 595 38 9 1952 2540 455652431 455653009 0.000000e+00 747.0
14 TraesCS6D01G226500 chr6A 100.000 36 0 0 4360 4395 455647505 455647540 2.840000e-07 67.6
15 TraesCS6D01G226500 chr6A 100.000 36 0 0 4360 4395 455654653 455654688 2.840000e-07 67.6
16 TraesCS6D01G226500 chr6B 95.851 940 25 5 813 1748 506271560 506270631 0.000000e+00 1507.0
17 TraesCS6D01G226500 chr6B 94.595 925 36 4 2805 3722 506269956 506269039 0.000000e+00 1419.0
18 TraesCS6D01G226500 chr6B 90.922 694 34 16 1 671 506272374 506271687 0.000000e+00 905.0
19 TraesCS6D01G226500 chr6B 88.290 649 48 13 1948 2577 506270623 506269984 0.000000e+00 752.0
20 TraesCS6D01G226500 chr6B 84.751 682 50 16 3736 4395 506252939 506252290 6.200000e-178 634.0
21 TraesCS6D01G226500 chr6B 90.123 81 4 2 734 813 506271668 506271591 7.780000e-18 102.0
22 TraesCS6D01G226500 chr7A 100.000 54 0 0 1842 1895 660504791 660504844 2.800000e-17 100.0
23 TraesCS6D01G226500 chr3D 100.000 53 0 0 1843 1895 307754870 307754818 1.010000e-16 99.0
24 TraesCS6D01G226500 chr3D 98.148 54 1 0 1842 1895 158931239 158931292 1.300000e-15 95.3
25 TraesCS6D01G226500 chr3D 98.148 54 1 0 1842 1895 158937354 158937407 1.300000e-15 95.3
26 TraesCS6D01G226500 chr3D 98.148 54 1 0 1842 1895 589248583 589248636 1.300000e-15 95.3
27 TraesCS6D01G226500 chr3D 100.000 50 0 0 1748 1797 213396567 213396518 4.680000e-15 93.5
28 TraesCS6D01G226500 chr3D 91.803 61 3 2 1738 1797 120675977 120676036 2.820000e-12 84.2
29 TraesCS6D01G226500 chrUn 100.000 51 0 0 1896 1946 261569106 261569156 1.300000e-15 95.3
30 TraesCS6D01G226500 chrUn 98.148 54 1 0 1842 1895 371790785 371790838 1.300000e-15 95.3
31 TraesCS6D01G226500 chrUn 100.000 51 0 0 1896 1946 455659474 455659424 1.300000e-15 95.3
32 TraesCS6D01G226500 chrUn 100.000 50 0 0 1797 1846 386523878 386523927 4.680000e-15 93.5
33 TraesCS6D01G226500 chrUn 100.000 50 0 0 1797 1846 397677874 397677825 4.680000e-15 93.5
34 TraesCS6D01G226500 chr5D 100.000 51 0 0 1896 1946 6253688 6253738 1.300000e-15 95.3
35 TraesCS6D01G226500 chr5D 98.148 54 1 0 1842 1895 196431273 196431326 1.300000e-15 95.3
36 TraesCS6D01G226500 chr5D 100.000 51 0 0 1896 1946 299972921 299972971 1.300000e-15 95.3
37 TraesCS6D01G226500 chr5D 100.000 51 0 0 1896 1946 329126319 329126369 1.300000e-15 95.3
38 TraesCS6D01G226500 chr5D 100.000 51 0 0 1845 1895 432406680 432406630 1.300000e-15 95.3
39 TraesCS6D01G226500 chr5D 100.000 51 0 0 1896 1946 503339027 503338977 1.300000e-15 95.3
40 TraesCS6D01G226500 chr5D 100.000 50 0 0 1797 1846 6234387 6234436 4.680000e-15 93.5
41 TraesCS6D01G226500 chr5D 100.000 50 0 0 1748 1797 432295373 432295422 4.680000e-15 93.5
42 TraesCS6D01G226500 chr5D 100.000 50 0 0 1748 1797 449150299 449150250 4.680000e-15 93.5
43 TraesCS6D01G226500 chr5D 100.000 50 0 0 1797 1846 483805915 483805964 4.680000e-15 93.5
44 TraesCS6D01G226500 chr4D 100.000 51 0 0 1896 1946 206914964 206915014 1.300000e-15 95.3
45 TraesCS6D01G226500 chr1D 98.148 54 1 0 1842 1895 177261612 177261665 1.300000e-15 95.3
46 TraesCS6D01G226500 chr1D 100.000 51 0 0 1896 1946 254459002 254458952 1.300000e-15 95.3
47 TraesCS6D01G226500 chr1D 100.000 50 0 0 1797 1846 180353883 180353932 4.680000e-15 93.5
48 TraesCS6D01G226500 chr1D 100.000 50 0 0 1797 1846 446750698 446750747 4.680000e-15 93.5
49 TraesCS6D01G226500 chr1A 100.000 51 0 0 1896 1946 554481844 554481794 1.300000e-15 95.3
50 TraesCS6D01G226500 chr1A 100.000 49 0 0 1797 1845 548023924 548023972 1.680000e-14 91.6
51 TraesCS6D01G226500 chr7D 100.000 50 0 0 1797 1846 384948480 384948431 4.680000e-15 93.5
52 TraesCS6D01G226500 chr5B 100.000 50 0 0 1748 1797 432874065 432874016 4.680000e-15 93.5
53 TraesCS6D01G226500 chr3A 100.000 50 0 0 1748 1797 672881094 672881143 4.680000e-15 93.5
54 TraesCS6D01G226500 chr3A 100.000 50 0 0 1748 1797 695638336 695638287 4.680000e-15 93.5
55 TraesCS6D01G226500 chr2D 100.000 50 0 0 1748 1797 37544432 37544481 4.680000e-15 93.5
56 TraesCS6D01G226500 chr2A 100.000 50 0 0 1748 1797 394050657 394050608 4.680000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G226500 chr6D 318084505 318088899 4394 False 8117.00 8117 100.000000 1 4395 1 chr6D.!!$F1 4394
1 TraesCS6D01G226500 chr6D 294408709 294414687 5978 True 508.16 937 87.574600 1317 4178 5 chr6D.!!$R2 2861
2 TraesCS6D01G226500 chr6A 455644117 455654688 10571 False 1055.15 1805 92.392125 531 4395 8 chr6A.!!$F1 3864
3 TraesCS6D01G226500 chr6B 506269039 506272374 3335 True 937.00 1507 91.956200 1 3722 5 chr6B.!!$R2 3721
4 TraesCS6D01G226500 chr6B 506252290 506252939 649 True 634.00 634 84.751000 3736 4395 1 chr6B.!!$R1 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.033504 AAAACTCGAGCAGCTTCGGA 59.966 50.0 13.61 3.7 40.83 4.55 F
674 701 0.099082 CGACGGAAGCTGGACTAGAC 59.901 60.0 0.00 0.0 0.00 2.59 F
731 759 0.260230 TCCTCCTCAGTAGCCCTCAG 59.740 60.0 0.00 0.0 0.00 3.35 F
740 768 0.324830 GTAGCCCTCAGTCTCCCACT 60.325 60.0 0.00 0.0 34.67 4.00 F
1004 1071 1.355971 CACACCACGTACTACATGGC 58.644 55.0 1.04 0.0 36.96 4.40 F
1805 9093 0.109086 AGATCGGCGGCATAGATTCG 60.109 55.0 10.53 0.0 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1717 9005 0.107643 TGAACATGTCGCCCAAGTCA 59.892 50.0 0.00 0.0 0.00 3.41 R
1786 9074 0.109086 CGAATCTATGCCGCCGATCT 60.109 55.0 0.00 0.0 0.00 2.75 R
1788 9076 0.109086 CTCGAATCTATGCCGCCGAT 60.109 55.0 0.00 0.0 0.00 4.18 R
1791 9079 0.598562 TCTCTCGAATCTATGCCGCC 59.401 55.0 0.00 0.0 0.00 6.13 R
2893 10201 0.105039 GGACGATCGGCTTCTCCATT 59.895 55.0 22.46 0.0 34.01 3.16 R
3801 12414 0.526524 GAATCACTCTCTGCCGACCG 60.527 60.0 0.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.033504 AAAACTCGAGCAGCTTCGGA 59.966 50.000 13.61 3.70 40.83 4.55
39 40 2.704572 CTTCGGACATTTTGGAGCTCT 58.295 47.619 14.64 0.00 0.00 4.09
58 59 7.105241 AGCTCTGATTTTGTGTTTTCTCTTT 57.895 32.000 0.00 0.00 0.00 2.52
63 64 7.281324 TCTGATTTTGTGTTTTCTCTTTACGGA 59.719 33.333 0.00 0.00 0.00 4.69
80 81 0.534873 GGAGCTCCTCCTGAAGTCAC 59.465 60.000 26.25 0.00 46.41 3.67
92 93 0.534203 GAAGTCACCTCGGCACCAAA 60.534 55.000 0.00 0.00 0.00 3.28
145 146 9.509855 TGATATTTACCGCAAACAAAATCATAC 57.490 29.630 0.00 0.00 0.00 2.39
152 153 5.361905 CGCAAACAAAATCATACGTTTTGG 58.638 37.500 12.78 0.00 45.92 3.28
154 155 5.674989 CAAACAAAATCATACGTTTTGGCC 58.325 37.500 12.78 0.00 45.92 5.36
193 195 1.657594 CTGTTCACGCTGTAGCAGATG 59.342 52.381 4.59 0.00 42.21 2.90
195 197 1.923204 GTTCACGCTGTAGCAGATGAG 59.077 52.381 4.59 0.00 42.21 2.90
228 230 2.791383 TTGAATCCAAAGCAACCGTG 57.209 45.000 0.00 0.00 0.00 4.94
286 290 0.169451 GTGAAAATTACCCGCCACCG 59.831 55.000 0.00 0.00 0.00 4.94
312 317 1.666553 CTGTGCTAAACCGCGGACA 60.667 57.895 35.90 23.09 0.00 4.02
314 319 2.740826 TGCTAAACCGCGGACAGC 60.741 61.111 35.90 32.15 43.95 4.40
362 367 3.624861 CCATAGAGCAGGCAACAAACTAG 59.375 47.826 0.00 0.00 41.41 2.57
366 371 0.310854 GCAGGCAACAAACTAGCGTT 59.689 50.000 0.00 0.00 41.41 4.84
395 411 1.153289 GCCGTCCATCTGCATGTCT 60.153 57.895 0.00 0.00 0.00 3.41
396 412 1.434622 GCCGTCCATCTGCATGTCTG 61.435 60.000 0.00 0.00 0.00 3.51
470 486 2.227036 ACCTTCCACTCCAGGCCAG 61.227 63.158 5.01 0.00 32.79 4.85
496 513 4.477119 GCGACCCTCCTACCCCCT 62.477 72.222 0.00 0.00 0.00 4.79
551 574 3.434167 CCATGGATTCTCAACGGAGGAAT 60.434 47.826 5.56 0.00 41.69 3.01
563 586 0.685458 GGAGGAATTGGCCATGCACT 60.685 55.000 6.09 2.74 0.00 4.40
671 698 2.707849 GGCGACGGAAGCTGGACTA 61.708 63.158 0.00 0.00 34.52 2.59
672 699 1.226717 GCGACGGAAGCTGGACTAG 60.227 63.158 0.00 0.00 0.00 2.57
673 700 1.654954 GCGACGGAAGCTGGACTAGA 61.655 60.000 0.00 0.00 0.00 2.43
674 701 0.099082 CGACGGAAGCTGGACTAGAC 59.901 60.000 0.00 0.00 0.00 2.59
675 702 1.465794 GACGGAAGCTGGACTAGACT 58.534 55.000 0.00 0.00 0.00 3.24
731 759 0.260230 TCCTCCTCAGTAGCCCTCAG 59.740 60.000 0.00 0.00 0.00 3.35
740 768 0.324830 GTAGCCCTCAGTCTCCCACT 60.325 60.000 0.00 0.00 34.67 4.00
792 820 3.288964 ACCTCGACACGATAGGAATCTT 58.711 45.455 0.00 0.00 43.77 2.40
793 821 3.066900 ACCTCGACACGATAGGAATCTTG 59.933 47.826 0.00 0.00 43.77 3.02
911 977 4.161295 CGAATCCTGGGCGAGCCA 62.161 66.667 16.65 1.48 37.98 4.75
1004 1071 1.355971 CACACCACGTACTACATGGC 58.644 55.000 1.04 0.00 36.96 4.40
1611 8895 4.254709 AAGCTGCTCGTGCACCCA 62.255 61.111 12.15 5.31 45.31 4.51
1704 8992 2.665519 CGTTTCCCAGCAAGAAATCACG 60.666 50.000 0.08 0.00 35.77 4.35
1717 9005 4.074970 AGAAATCACGAAAATGCTCCTGT 58.925 39.130 0.00 0.00 0.00 4.00
1720 9008 2.143122 TCACGAAAATGCTCCTGTGAC 58.857 47.619 0.00 0.00 31.93 3.67
1738 9026 1.812571 GACTTGGGCGACATGTTCATT 59.187 47.619 0.00 0.00 37.56 2.57
1745 9033 3.129287 GGGCGACATGTTCATTCTGATTT 59.871 43.478 0.00 0.00 0.00 2.17
1748 9036 4.790140 GCGACATGTTCATTCTGATTTGTC 59.210 41.667 0.00 0.00 31.89 3.18
1749 9037 5.617529 GCGACATGTTCATTCTGATTTGTCA 60.618 40.000 0.00 0.00 33.38 3.58
1750 9038 5.791974 CGACATGTTCATTCTGATTTGTCAC 59.208 40.000 0.00 0.00 33.38 3.67
1751 9039 6.566376 CGACATGTTCATTCTGATTTGTCACA 60.566 38.462 0.00 0.00 33.38 3.58
1752 9040 6.675026 ACATGTTCATTCTGATTTGTCACAG 58.325 36.000 0.00 0.00 35.72 3.66
1753 9041 6.487668 ACATGTTCATTCTGATTTGTCACAGA 59.512 34.615 0.00 0.00 40.66 3.41
1763 9051 8.675705 TCTGATTTGTCACAGAAATCTAAACA 57.324 30.769 4.26 0.00 39.55 2.83
1764 9052 9.288576 TCTGATTTGTCACAGAAATCTAAACAT 57.711 29.630 4.26 0.00 39.55 2.71
1765 9053 9.903682 CTGATTTGTCACAGAAATCTAAACATT 57.096 29.630 4.26 0.00 39.55 2.71
1771 9059 9.430623 TGTCACAGAAATCTAAACATTTATCGA 57.569 29.630 0.00 0.00 0.00 3.59
1774 9062 9.869844 CACAGAAATCTAAACATTTATCGATCC 57.130 33.333 0.00 0.00 0.00 3.36
1775 9063 9.613428 ACAGAAATCTAAACATTTATCGATCCA 57.387 29.630 0.00 0.00 0.00 3.41
1779 9067 9.573166 AAATCTAAACATTTATCGATCCATCCA 57.427 29.630 0.00 0.00 0.00 3.41
1780 9068 9.745018 AATCTAAACATTTATCGATCCATCCAT 57.255 29.630 0.00 0.00 0.00 3.41
1784 9072 7.928307 AACATTTATCGATCCATCCATAAGG 57.072 36.000 0.00 0.00 0.00 2.69
1785 9073 7.020827 ACATTTATCGATCCATCCATAAGGT 57.979 36.000 0.00 0.00 35.89 3.50
1786 9074 8.146053 ACATTTATCGATCCATCCATAAGGTA 57.854 34.615 0.00 0.00 35.89 3.08
1787 9075 8.260818 ACATTTATCGATCCATCCATAAGGTAG 58.739 37.037 0.00 0.00 35.89 3.18
1788 9076 8.478066 CATTTATCGATCCATCCATAAGGTAGA 58.522 37.037 0.00 0.00 35.89 2.59
1789 9077 8.609617 TTTATCGATCCATCCATAAGGTAGAT 57.390 34.615 0.00 0.00 35.89 1.98
1790 9078 6.723298 ATCGATCCATCCATAAGGTAGATC 57.277 41.667 0.00 0.00 34.92 2.75
1791 9079 4.926244 CGATCCATCCATAAGGTAGATCG 58.074 47.826 15.87 15.87 44.35 3.69
1792 9080 4.202060 CGATCCATCCATAAGGTAGATCGG 60.202 50.000 19.13 8.36 45.05 4.18
1793 9081 2.832129 TCCATCCATAAGGTAGATCGGC 59.168 50.000 0.00 0.00 35.89 5.54
1794 9082 2.417379 CCATCCATAAGGTAGATCGGCG 60.417 54.545 0.00 0.00 35.89 6.46
1795 9083 1.254026 TCCATAAGGTAGATCGGCGG 58.746 55.000 7.21 0.00 35.89 6.13
1796 9084 0.389948 CCATAAGGTAGATCGGCGGC 60.390 60.000 7.21 0.00 0.00 6.53
1797 9085 0.317160 CATAAGGTAGATCGGCGGCA 59.683 55.000 10.53 0.00 0.00 5.69
1798 9086 1.066858 CATAAGGTAGATCGGCGGCAT 60.067 52.381 10.53 1.21 0.00 4.40
1799 9087 1.913778 TAAGGTAGATCGGCGGCATA 58.086 50.000 10.53 0.00 0.00 3.14
1800 9088 0.603569 AAGGTAGATCGGCGGCATAG 59.396 55.000 10.53 0.00 0.00 2.23
1801 9089 0.251209 AGGTAGATCGGCGGCATAGA 60.251 55.000 10.53 0.00 0.00 1.98
1802 9090 0.818296 GGTAGATCGGCGGCATAGAT 59.182 55.000 10.53 3.34 0.00 1.98
1803 9091 1.204941 GGTAGATCGGCGGCATAGATT 59.795 52.381 10.53 0.00 0.00 2.40
1804 9092 2.531206 GTAGATCGGCGGCATAGATTC 58.469 52.381 10.53 0.00 0.00 2.52
1805 9093 0.109086 AGATCGGCGGCATAGATTCG 60.109 55.000 10.53 0.00 0.00 3.34
1806 9094 0.109272 GATCGGCGGCATAGATTCGA 60.109 55.000 10.53 0.00 0.00 3.71
1807 9095 0.109086 ATCGGCGGCATAGATTCGAG 60.109 55.000 10.53 0.00 0.00 4.04
1808 9096 1.170290 TCGGCGGCATAGATTCGAGA 61.170 55.000 10.53 0.00 0.00 4.04
1809 9097 0.730834 CGGCGGCATAGATTCGAGAG 60.731 60.000 10.53 0.00 0.00 3.20
1810 9098 0.598562 GGCGGCATAGATTCGAGAGA 59.401 55.000 3.07 0.00 39.20 3.10
1825 9113 6.928979 TTCGAGAGAATAGGAGAACAGTAG 57.071 41.667 0.00 0.00 46.92 2.57
1826 9114 4.817464 TCGAGAGAATAGGAGAACAGTAGC 59.183 45.833 0.00 0.00 37.03 3.58
1827 9115 4.023536 CGAGAGAATAGGAGAACAGTAGCC 60.024 50.000 0.00 0.00 0.00 3.93
1828 9116 5.137412 AGAGAATAGGAGAACAGTAGCCT 57.863 43.478 0.00 0.00 34.56 4.58
1829 9117 4.892934 AGAGAATAGGAGAACAGTAGCCTG 59.107 45.833 0.00 0.00 44.68 4.85
1830 9118 4.873010 AGAATAGGAGAACAGTAGCCTGA 58.127 43.478 0.00 0.00 41.50 3.86
1831 9119 4.647399 AGAATAGGAGAACAGTAGCCTGAC 59.353 45.833 0.00 0.00 41.50 3.51
1832 9120 2.310779 AGGAGAACAGTAGCCTGACA 57.689 50.000 0.00 0.00 41.50 3.58
1833 9121 2.609747 AGGAGAACAGTAGCCTGACAA 58.390 47.619 0.00 0.00 41.50 3.18
1834 9122 2.972713 AGGAGAACAGTAGCCTGACAAA 59.027 45.455 0.00 0.00 41.50 2.83
1835 9123 3.067833 GGAGAACAGTAGCCTGACAAAC 58.932 50.000 0.00 0.00 41.50 2.93
1836 9124 3.494398 GGAGAACAGTAGCCTGACAAACA 60.494 47.826 0.00 0.00 41.50 2.83
1837 9125 3.733337 AGAACAGTAGCCTGACAAACAG 58.267 45.455 0.00 0.00 41.50 3.16
1838 9126 3.134804 AGAACAGTAGCCTGACAAACAGT 59.865 43.478 0.00 0.00 44.40 3.55
1853 9141 7.924103 GACAAACAGTCGGTTCATAAAATTT 57.076 32.000 0.00 0.00 39.29 1.82
1855 9143 9.113876 GACAAACAGTCGGTTCATAAAATTTAG 57.886 33.333 0.00 0.00 39.29 1.85
1856 9144 8.079809 ACAAACAGTCGGTTCATAAAATTTAGG 58.920 33.333 0.00 0.00 39.29 2.69
1857 9145 7.989416 AACAGTCGGTTCATAAAATTTAGGA 57.011 32.000 0.00 0.00 33.35 2.94
1858 9146 7.989416 ACAGTCGGTTCATAAAATTTAGGAA 57.011 32.000 8.52 8.52 0.00 3.36
1859 9147 7.813645 ACAGTCGGTTCATAAAATTTAGGAAC 58.186 34.615 25.88 25.88 37.66 3.62
1860 9148 7.446013 ACAGTCGGTTCATAAAATTTAGGAACA 59.554 33.333 31.00 17.38 39.57 3.18
1861 9149 8.458843 CAGTCGGTTCATAAAATTTAGGAACAT 58.541 33.333 31.00 17.97 39.57 2.71
1862 9150 9.020731 AGTCGGTTCATAAAATTTAGGAACATT 57.979 29.630 31.00 17.42 39.57 2.71
1898 9186 9.836076 ATTAAAATAGACTTCGTTTGGTAAAGC 57.164 29.630 0.00 0.00 0.00 3.51
1899 9187 7.506328 AAAATAGACTTCGTTTGGTAAAGCT 57.494 32.000 0.00 0.00 0.00 3.74
1900 9188 6.723131 AATAGACTTCGTTTGGTAAAGCTC 57.277 37.500 0.00 0.00 0.00 4.09
1901 9189 4.338379 AGACTTCGTTTGGTAAAGCTCT 57.662 40.909 0.00 0.00 0.00 4.09
1902 9190 5.464030 AGACTTCGTTTGGTAAAGCTCTA 57.536 39.130 0.00 0.00 0.00 2.43
1903 9191 6.038997 AGACTTCGTTTGGTAAAGCTCTAT 57.961 37.500 0.00 0.00 0.00 1.98
1904 9192 6.465084 AGACTTCGTTTGGTAAAGCTCTATT 58.535 36.000 0.00 0.00 0.00 1.73
1905 9193 6.369065 AGACTTCGTTTGGTAAAGCTCTATTG 59.631 38.462 0.00 0.00 0.00 1.90
1906 9194 5.411669 ACTTCGTTTGGTAAAGCTCTATTGG 59.588 40.000 0.00 0.00 0.00 3.16
1907 9195 4.258543 TCGTTTGGTAAAGCTCTATTGGG 58.741 43.478 0.00 0.00 0.00 4.12
1908 9196 3.377172 CGTTTGGTAAAGCTCTATTGGGG 59.623 47.826 0.00 0.00 0.00 4.96
1909 9197 4.595986 GTTTGGTAAAGCTCTATTGGGGA 58.404 43.478 0.00 0.00 0.00 4.81
1910 9198 4.503714 TTGGTAAAGCTCTATTGGGGAG 57.496 45.455 0.00 0.00 0.00 4.30
1911 9199 3.731431 TGGTAAAGCTCTATTGGGGAGA 58.269 45.455 0.00 0.00 33.03 3.71
1912 9200 4.108570 TGGTAAAGCTCTATTGGGGAGAA 58.891 43.478 0.00 0.00 33.03 2.87
1913 9201 4.164221 TGGTAAAGCTCTATTGGGGAGAAG 59.836 45.833 0.00 0.00 33.03 2.85
1914 9202 4.164413 GGTAAAGCTCTATTGGGGAGAAGT 59.836 45.833 0.00 0.00 33.03 3.01
1915 9203 5.365895 GGTAAAGCTCTATTGGGGAGAAGTA 59.634 44.000 0.00 0.00 33.03 2.24
1916 9204 6.126854 GGTAAAGCTCTATTGGGGAGAAGTAA 60.127 42.308 0.00 0.00 33.03 2.24
1917 9205 6.388619 AAAGCTCTATTGGGGAGAAGTAAA 57.611 37.500 0.00 0.00 33.03 2.01
1918 9206 5.622346 AGCTCTATTGGGGAGAAGTAAAG 57.378 43.478 0.00 0.00 33.03 1.85
1919 9207 5.033522 AGCTCTATTGGGGAGAAGTAAAGT 58.966 41.667 0.00 0.00 33.03 2.66
1920 9208 6.203072 AGCTCTATTGGGGAGAAGTAAAGTA 58.797 40.000 0.00 0.00 33.03 2.24
1921 9209 6.672657 AGCTCTATTGGGGAGAAGTAAAGTAA 59.327 38.462 0.00 0.00 33.03 2.24
1922 9210 6.762187 GCTCTATTGGGGAGAAGTAAAGTAAC 59.238 42.308 0.00 0.00 33.03 2.50
1923 9211 7.364851 GCTCTATTGGGGAGAAGTAAAGTAACT 60.365 40.741 0.00 0.00 33.03 2.24
1924 9212 9.198475 CTCTATTGGGGAGAAGTAAAGTAACTA 57.802 37.037 0.00 0.00 33.03 2.24
1925 9213 9.551339 TCTATTGGGGAGAAGTAAAGTAACTAA 57.449 33.333 0.00 0.00 0.00 2.24
1928 9216 9.871175 ATTGGGGAGAAGTAAAGTAACTAAAAA 57.129 29.630 0.00 0.00 0.00 1.94
1929 9217 8.913487 TGGGGAGAAGTAAAGTAACTAAAAAG 57.087 34.615 0.00 0.00 0.00 2.27
1930 9218 8.496916 TGGGGAGAAGTAAAGTAACTAAAAAGT 58.503 33.333 0.00 0.00 0.00 2.66
1976 9264 2.766970 TTTGCTACGTCAAAAGTGCC 57.233 45.000 0.00 0.00 33.47 5.01
1994 9282 2.338015 CCATGAGCCCACACTGCAC 61.338 63.158 0.00 0.00 0.00 4.57
2002 9290 1.321474 CCCACACTGCACATGAAACT 58.679 50.000 0.00 0.00 0.00 2.66
2026 9316 9.394477 ACTTTTTCTTATTCTATTTGTTGCGAC 57.606 29.630 0.00 0.00 0.00 5.19
2027 9317 8.429739 TTTTTCTTATTCTATTTGTTGCGACG 57.570 30.769 0.00 0.00 0.00 5.12
2028 9318 6.954616 TTCTTATTCTATTTGTTGCGACGA 57.045 33.333 0.00 0.00 0.00 4.20
2029 9319 6.569228 TCTTATTCTATTTGTTGCGACGAG 57.431 37.500 0.00 0.00 0.00 4.18
2030 9320 6.327154 TCTTATTCTATTTGTTGCGACGAGA 58.673 36.000 0.00 0.00 0.00 4.04
2031 9321 6.809689 TCTTATTCTATTTGTTGCGACGAGAA 59.190 34.615 0.00 10.99 0.00 2.87
2053 9343 5.947228 ACGAGATCACACATGAAACATTT 57.053 34.783 0.00 0.00 38.69 2.32
2056 9346 6.144854 CGAGATCACACATGAAACATTTTGT 58.855 36.000 0.00 0.00 38.69 2.83
2057 9347 7.041440 ACGAGATCACACATGAAACATTTTGTA 60.041 33.333 0.00 0.00 38.69 2.41
2058 9348 7.802720 CGAGATCACACATGAAACATTTTGTAA 59.197 33.333 0.00 0.00 38.69 2.41
2059 9349 9.121517 GAGATCACACATGAAACATTTTGTAAG 57.878 33.333 0.00 0.00 38.69 2.34
2060 9350 7.596248 AGATCACACATGAAACATTTTGTAAGC 59.404 33.333 0.00 0.00 38.69 3.09
2061 9351 6.804677 TCACACATGAAACATTTTGTAAGCT 58.195 32.000 0.00 0.00 0.00 3.74
2063 9353 8.409371 TCACACATGAAACATTTTGTAAGCTTA 58.591 29.630 0.86 0.86 0.00 3.09
2064 9354 9.195411 CACACATGAAACATTTTGTAAGCTTAT 57.805 29.630 9.88 0.00 0.00 1.73
2141 9432 4.201628 CGAAGACTACAAAAAGGCAGATCG 60.202 45.833 0.00 0.00 0.00 3.69
2180 9471 3.209410 AGAATCATTTCGGCCATCAGTC 58.791 45.455 2.24 0.00 36.93 3.51
2185 9476 2.099141 TTTCGGCCATCAGTCTCAAG 57.901 50.000 2.24 0.00 0.00 3.02
2226 9520 2.364970 TGAACTTTTGAGGCAATGTGGG 59.635 45.455 0.00 0.00 0.00 4.61
2235 9529 2.684881 GAGGCAATGTGGGATGTGTTAG 59.315 50.000 0.00 0.00 0.00 2.34
2276 9579 5.703130 ACAGAGTTCATTTCTTACTTCCAGC 59.297 40.000 0.00 0.00 0.00 4.85
2306 9612 5.865085 TCGCTGGTTCTTATTATTGCCTAT 58.135 37.500 0.00 0.00 0.00 2.57
2335 9641 2.643933 GCAGGAAACATTTCTCTGCC 57.356 50.000 23.41 13.49 45.37 4.85
2394 9700 2.062971 AGCAATGGTCCTGGCTATTG 57.937 50.000 16.84 16.84 39.38 1.90
2479 9786 4.791163 CCTGTGTGTTGTTCAGTTAAAACG 59.209 41.667 0.00 0.00 0.00 3.60
2481 9788 3.544682 GTGTGTTGTTCAGTTAAAACGGC 59.455 43.478 0.00 0.00 0.00 5.68
2490 9797 2.096119 CAGTTAAAACGGCGGTTAGTGG 60.096 50.000 12.04 0.00 34.62 4.00
2553 9860 5.350914 TGTTGTGCCTTGTTTCAAAGAAATG 59.649 36.000 0.00 0.00 0.00 2.32
2592 9899 1.636148 AATTGAAGGCACCTGCACAT 58.364 45.000 0.00 0.00 44.36 3.21
2617 9924 2.094494 TGCTGTCGTTTCAAGCCAAAAA 60.094 40.909 0.00 0.00 0.00 1.94
2656 9963 2.549064 GGCACTTTCAGCCCATTTTT 57.451 45.000 0.00 0.00 46.50 1.94
2671 9979 5.063817 GCCCATTTTTGTATTTCAGCATCAC 59.936 40.000 0.00 0.00 0.00 3.06
2674 9982 6.183360 CCATTTTTGTATTTCAGCATCACTGC 60.183 38.462 0.00 0.00 46.76 4.40
2716 10024 6.727824 ATTCTCACGATTTTCTTGAACGAT 57.272 33.333 0.00 0.00 0.00 3.73
2759 10067 4.541779 GTGTATTTGTTCACGGCATTTGA 58.458 39.130 0.00 0.00 0.00 2.69
2775 10083 4.497006 GCATTTGATGTGATGGTAGCTGAC 60.497 45.833 0.00 0.00 0.00 3.51
2781 10089 3.551846 TGTGATGGTAGCTGACGATAGA 58.448 45.455 0.00 0.00 41.38 1.98
2790 10098 1.565305 CTGACGATAGACTGCTTGCC 58.435 55.000 0.00 0.00 41.38 4.52
2824 10132 2.833582 GAGGGGATCGCCGACTCA 60.834 66.667 21.98 0.00 38.21 3.41
2890 10198 2.421314 CTCGACCACCTGCACACA 59.579 61.111 0.00 0.00 0.00 3.72
2909 10217 0.390860 AGGAATGGAGAAGCCGATCG 59.609 55.000 8.51 8.51 40.66 3.69
3446 10823 1.476891 ACCATTCAGACGTAGCACGAT 59.523 47.619 14.18 1.75 46.05 3.73
3471 10853 1.270358 GGCTCAAGGAACGACTGAACT 60.270 52.381 0.00 0.00 0.00 3.01
3480 10862 0.034059 ACGACTGAACTTCTGCTGGG 59.966 55.000 0.00 0.00 0.00 4.45
3497 10883 1.034292 GGGCAGTTGGAGAATGGAGC 61.034 60.000 0.00 0.00 0.00 4.70
3498 10884 0.034670 GGCAGTTGGAGAATGGAGCT 60.035 55.000 0.00 0.00 0.00 4.09
3514 11321 3.053455 GGAGCTACGCTTCACATATCAC 58.947 50.000 0.00 0.00 39.88 3.06
3716 11527 6.183360 ACCTTCGTCTGATCTGAGTGTTATAC 60.183 42.308 2.02 0.00 0.00 1.47
3717 11528 6.183360 CCTTCGTCTGATCTGAGTGTTATACA 60.183 42.308 2.02 0.00 0.00 2.29
3718 11529 6.364945 TCGTCTGATCTGAGTGTTATACAG 57.635 41.667 2.02 0.00 0.00 2.74
3719 11530 5.880887 TCGTCTGATCTGAGTGTTATACAGT 59.119 40.000 2.02 0.00 33.77 3.55
3720 11531 7.046033 TCGTCTGATCTGAGTGTTATACAGTA 58.954 38.462 2.02 0.00 30.64 2.74
3750 12350 4.199310 TGATTGGTAGGAGTATTTGCTGC 58.801 43.478 0.00 0.00 0.00 5.25
3801 12414 1.192534 GCTGTTCTACGCACTGACAAC 59.807 52.381 0.00 0.00 0.00 3.32
3804 12417 0.386476 TTCTACGCACTGACAACGGT 59.614 50.000 0.00 0.00 35.84 4.83
3876 14872 1.069204 TGGTCTCTGCACAGTTGAGTC 59.931 52.381 0.00 0.00 0.00 3.36
3892 14888 4.481368 TGAGTCTCTGTCCTCTAGTCTC 57.519 50.000 0.65 0.00 0.00 3.36
3893 14889 4.101114 TGAGTCTCTGTCCTCTAGTCTCT 58.899 47.826 0.65 0.00 0.00 3.10
3906 14903 5.367352 CCTCTAGTCTCTAGTCCCTAACAGA 59.633 48.000 4.13 0.00 0.00 3.41
4002 15002 3.817709 CCTCAAAAACAGGCCTGAAAA 57.182 42.857 39.19 15.82 0.00 2.29
4003 15003 4.135747 CCTCAAAAACAGGCCTGAAAAA 57.864 40.909 39.19 16.84 0.00 1.94
4004 15004 3.871006 CCTCAAAAACAGGCCTGAAAAAC 59.129 43.478 39.19 0.00 0.00 2.43
4005 15005 4.502962 CTCAAAAACAGGCCTGAAAAACA 58.497 39.130 39.19 16.59 0.00 2.83
4006 15006 4.899502 TCAAAAACAGGCCTGAAAAACAA 58.100 34.783 39.19 15.14 0.00 2.83
4007 15007 4.693095 TCAAAAACAGGCCTGAAAAACAAC 59.307 37.500 39.19 0.00 0.00 3.32
4008 15008 4.551702 AAAACAGGCCTGAAAAACAACT 57.448 36.364 39.19 10.61 0.00 3.16
4009 15009 4.551702 AAACAGGCCTGAAAAACAACTT 57.448 36.364 39.19 16.44 0.00 2.66
4010 15010 4.551702 AACAGGCCTGAAAAACAACTTT 57.448 36.364 39.19 15.67 0.00 2.66
4012 15012 4.252878 ACAGGCCTGAAAAACAACTTTTG 58.747 39.130 39.19 7.91 37.36 2.44
4013 15013 3.622612 CAGGCCTGAAAAACAACTTTTGG 59.377 43.478 29.88 0.00 37.36 3.28
4082 15082 5.588648 GGCCTACAGTGTGCTGATTTATTTA 59.411 40.000 5.88 0.00 45.28 1.40
4083 15083 6.263168 GGCCTACAGTGTGCTGATTTATTTAT 59.737 38.462 5.88 0.00 45.28 1.40
4084 15084 7.201821 GGCCTACAGTGTGCTGATTTATTTATT 60.202 37.037 5.88 0.00 45.28 1.40
4085 15085 8.190784 GCCTACAGTGTGCTGATTTATTTATTT 58.809 33.333 5.88 0.00 45.28 1.40
4189 15210 5.815740 GCCGGAAAAACTTACTGATCATCTA 59.184 40.000 5.05 0.00 0.00 1.98
4209 15230 7.286546 TCATCTATAGTCTCCTTGTCCTTGAAG 59.713 40.741 0.00 0.00 0.00 3.02
4210 15231 6.732487 TCTATAGTCTCCTTGTCCTTGAAGA 58.268 40.000 0.00 0.00 0.00 2.87
4211 15232 5.930837 ATAGTCTCCTTGTCCTTGAAGAG 57.069 43.478 0.00 0.00 0.00 2.85
4212 15233 3.850752 AGTCTCCTTGTCCTTGAAGAGA 58.149 45.455 0.00 0.00 0.00 3.10
4213 15234 3.831911 AGTCTCCTTGTCCTTGAAGAGAG 59.168 47.826 0.00 0.00 0.00 3.20
4215 15236 2.235898 CTCCTTGTCCTTGAAGAGAGGG 59.764 54.545 0.00 0.00 34.93 4.30
4217 15238 2.235898 CCTTGTCCTTGAAGAGAGGGAG 59.764 54.545 0.00 0.00 34.93 4.30
4218 15239 3.169099 CTTGTCCTTGAAGAGAGGGAGA 58.831 50.000 0.00 0.00 34.93 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.868406 CCGAAGCTGCTCGAGTTTTT 59.132 50.000 15.13 3.90 41.44 1.94
25 26 5.069516 ACACAAAATCAGAGCTCCAAAATGT 59.930 36.000 10.93 6.47 0.00 2.71
39 40 7.323049 TCCGTAAAGAGAAAACACAAAATCA 57.677 32.000 0.00 0.00 0.00 2.57
63 64 0.116143 AGGTGACTTCAGGAGGAGCT 59.884 55.000 0.00 0.00 37.44 4.09
80 81 1.147473 GCAAAAATTTGGTGCCGAGG 58.853 50.000 13.63 0.00 38.57 4.63
92 93 8.367156 TGTAATTTTCTAGGAGCTTGCAAAAAT 58.633 29.630 0.00 0.00 0.00 1.82
166 168 5.035992 TGCTACAGCGTGAACAGTATTGTT 61.036 41.667 2.87 2.87 46.61 2.83
168 170 2.993220 TGCTACAGCGTGAACAGTATTG 59.007 45.455 0.00 0.00 45.83 1.90
170 172 2.492088 TCTGCTACAGCGTGAACAGTAT 59.508 45.455 0.00 0.00 45.83 2.12
195 197 1.028868 ATTCAAAGCTGAGCCCGAGC 61.029 55.000 0.00 0.00 40.32 5.03
223 225 1.336795 GGCAATTTTTAGCTGCACGGT 60.337 47.619 1.02 0.00 37.83 4.83
226 228 3.368843 GTGATGGCAATTTTTAGCTGCAC 59.631 43.478 1.02 0.00 37.83 4.57
227 229 3.587923 GTGATGGCAATTTTTAGCTGCA 58.412 40.909 1.02 0.00 37.83 4.41
228 230 2.931969 GGTGATGGCAATTTTTAGCTGC 59.068 45.455 0.00 0.00 35.28 5.25
238 241 1.927487 TGAGCTTTGGTGATGGCAAT 58.073 45.000 0.00 0.00 0.00 3.56
286 290 3.723835 CGCGGTTTAGCACAGTTGTATTC 60.724 47.826 0.00 0.00 36.85 1.75
312 317 2.042831 GCCGGATGAAAGTGCTGCT 61.043 57.895 5.05 0.00 0.00 4.24
314 319 2.787249 CGCCGGATGAAAGTGCTG 59.213 61.111 5.05 0.00 0.00 4.41
351 356 0.039527 CCCCAACGCTAGTTTGTTGC 60.040 55.000 15.05 0.00 43.13 4.17
354 359 1.602605 GGCCCCAACGCTAGTTTGT 60.603 57.895 0.00 0.00 38.79 2.83
381 397 2.439409 CAAACCAGACATGCAGATGGA 58.561 47.619 14.20 0.00 36.62 3.41
389 405 1.031235 TGTGGTGCAAACCAGACATG 58.969 50.000 0.00 0.00 41.00 3.21
395 411 0.323816 TGGAGTTGTGGTGCAAACCA 60.324 50.000 0.00 0.00 40.66 3.67
396 412 0.102300 GTGGAGTTGTGGTGCAAACC 59.898 55.000 0.00 0.00 39.03 3.27
483 500 0.942721 AGTTAGAGGGGGTAGGAGGG 59.057 60.000 0.00 0.00 0.00 4.30
492 509 2.187946 CAGCGGCAGTTAGAGGGG 59.812 66.667 1.45 0.00 0.00 4.79
495 512 2.103042 GTGGCAGCGGCAGTTAGAG 61.103 63.158 11.88 0.00 43.71 2.43
496 513 2.047274 GTGGCAGCGGCAGTTAGA 60.047 61.111 11.88 0.00 43.71 2.10
551 574 2.521224 TGTGCAGTGCATGGCCAA 60.521 55.556 22.87 0.00 41.91 4.52
671 698 0.980423 GGCTTCCTTCCAGTGAGTCT 59.020 55.000 0.00 0.00 0.00 3.24
672 699 0.687354 TGGCTTCCTTCCAGTGAGTC 59.313 55.000 0.00 0.00 0.00 3.36
673 700 0.398318 GTGGCTTCCTTCCAGTGAGT 59.602 55.000 0.00 0.00 33.63 3.41
674 701 0.322008 GGTGGCTTCCTTCCAGTGAG 60.322 60.000 0.00 0.00 33.63 3.51
675 702 1.761174 GGTGGCTTCCTTCCAGTGA 59.239 57.895 0.00 0.00 33.63 3.41
740 768 0.254462 TCAACCAACCACTGAGCACA 59.746 50.000 0.00 0.00 0.00 4.57
792 820 1.074926 GGAGGAGGAGGATGGCTCA 60.075 63.158 0.00 0.00 0.00 4.26
793 821 0.831711 GAGGAGGAGGAGGATGGCTC 60.832 65.000 0.00 0.00 0.00 4.70
849 915 0.386478 CGCTTTGCTCAGTTGGCTTC 60.386 55.000 0.00 0.00 0.00 3.86
892 958 2.586357 GCTCGCCCAGGATTCGAC 60.586 66.667 0.00 0.00 0.00 4.20
980 1046 3.285523 TAGTACGTGGTGTGCGCCC 62.286 63.158 4.18 0.00 38.36 6.13
981 1047 2.090524 GTAGTACGTGGTGTGCGCC 61.091 63.158 4.18 0.00 38.36 6.53
982 1048 0.734942 ATGTAGTACGTGGTGTGCGC 60.735 55.000 0.00 0.00 38.36 6.09
983 1049 0.989164 CATGTAGTACGTGGTGTGCG 59.011 55.000 13.81 0.00 38.36 5.34
992 1058 2.657296 CCGGCGCCATGTAGTACG 60.657 66.667 28.98 8.70 0.00 3.67
1212 1282 3.081409 ATGGGCGCGAAGTAGGGT 61.081 61.111 12.10 0.00 0.00 4.34
1257 1327 4.603946 GCGATGGGGCCGAGGTAC 62.604 72.222 0.00 0.00 0.00 3.34
1704 8992 2.229784 CCCAAGTCACAGGAGCATTTTC 59.770 50.000 0.00 0.00 0.00 2.29
1717 9005 0.107643 TGAACATGTCGCCCAAGTCA 59.892 50.000 0.00 0.00 0.00 3.41
1720 9008 2.086869 AGAATGAACATGTCGCCCAAG 58.913 47.619 0.00 0.00 0.00 3.61
1738 9026 8.675705 TGTTTAGATTTCTGTGACAAATCAGA 57.324 30.769 11.34 0.00 41.08 3.27
1745 9033 9.430623 TCGATAAATGTTTAGATTTCTGTGACA 57.569 29.630 0.00 0.00 0.00 3.58
1748 9036 9.869844 GGATCGATAAATGTTTAGATTTCTGTG 57.130 33.333 0.00 0.00 0.00 3.66
1749 9037 9.613428 TGGATCGATAAATGTTTAGATTTCTGT 57.387 29.630 0.00 0.00 0.00 3.41
1753 9041 9.573166 TGGATGGATCGATAAATGTTTAGATTT 57.427 29.630 0.00 0.00 0.00 2.17
1758 9046 9.448438 CCTTATGGATGGATCGATAAATGTTTA 57.552 33.333 0.00 0.00 37.15 2.01
1759 9047 7.944554 ACCTTATGGATGGATCGATAAATGTTT 59.055 33.333 0.00 0.00 37.15 2.83
1760 9048 7.461749 ACCTTATGGATGGATCGATAAATGTT 58.538 34.615 0.00 0.00 37.15 2.71
1761 9049 7.020827 ACCTTATGGATGGATCGATAAATGT 57.979 36.000 0.00 4.17 37.15 2.71
1762 9050 8.478066 TCTACCTTATGGATGGATCGATAAATG 58.522 37.037 0.00 3.71 37.15 2.32
1763 9051 8.609617 TCTACCTTATGGATGGATCGATAAAT 57.390 34.615 0.00 0.00 37.15 1.40
1764 9052 8.609617 ATCTACCTTATGGATGGATCGATAAA 57.390 34.615 0.00 0.00 37.15 1.40
1765 9053 7.013369 CGATCTACCTTATGGATGGATCGATAA 59.987 40.741 26.38 4.60 47.00 1.75
1766 9054 6.486993 CGATCTACCTTATGGATGGATCGATA 59.513 42.308 26.38 0.00 47.00 2.92
1767 9055 5.300539 CGATCTACCTTATGGATGGATCGAT 59.699 44.000 26.38 0.00 47.00 3.59
1768 9056 4.640647 CGATCTACCTTATGGATGGATCGA 59.359 45.833 26.38 0.00 47.00 3.59
1769 9057 4.202060 CCGATCTACCTTATGGATGGATCG 60.202 50.000 25.12 25.12 45.71 3.69
1770 9058 4.442192 GCCGATCTACCTTATGGATGGATC 60.442 50.000 0.81 9.47 37.04 3.36
1771 9059 3.452627 GCCGATCTACCTTATGGATGGAT 59.547 47.826 0.81 2.28 37.04 3.41
1772 9060 2.832129 GCCGATCTACCTTATGGATGGA 59.168 50.000 0.81 0.00 37.04 3.41
1773 9061 2.417379 CGCCGATCTACCTTATGGATGG 60.417 54.545 0.81 0.00 37.04 3.51
1774 9062 2.417379 CCGCCGATCTACCTTATGGATG 60.417 54.545 0.81 0.00 37.04 3.51
1775 9063 1.825474 CCGCCGATCTACCTTATGGAT 59.175 52.381 0.81 0.00 37.04 3.41
1776 9064 1.254026 CCGCCGATCTACCTTATGGA 58.746 55.000 0.81 0.00 37.04 3.41
1777 9065 0.389948 GCCGCCGATCTACCTTATGG 60.390 60.000 0.00 0.00 39.83 2.74
1778 9066 0.317160 TGCCGCCGATCTACCTTATG 59.683 55.000 0.00 0.00 0.00 1.90
1779 9067 1.267121 ATGCCGCCGATCTACCTTAT 58.733 50.000 0.00 0.00 0.00 1.73
1780 9068 1.816835 CTATGCCGCCGATCTACCTTA 59.183 52.381 0.00 0.00 0.00 2.69
1781 9069 0.603569 CTATGCCGCCGATCTACCTT 59.396 55.000 0.00 0.00 0.00 3.50
1782 9070 0.251209 TCTATGCCGCCGATCTACCT 60.251 55.000 0.00 0.00 0.00 3.08
1783 9071 0.818296 ATCTATGCCGCCGATCTACC 59.182 55.000 0.00 0.00 0.00 3.18
1784 9072 2.531206 GAATCTATGCCGCCGATCTAC 58.469 52.381 0.00 0.00 0.00 2.59
1785 9073 1.132453 CGAATCTATGCCGCCGATCTA 59.868 52.381 0.00 0.00 0.00 1.98
1786 9074 0.109086 CGAATCTATGCCGCCGATCT 60.109 55.000 0.00 0.00 0.00 2.75
1787 9075 0.109272 TCGAATCTATGCCGCCGATC 60.109 55.000 0.00 0.00 0.00 3.69
1788 9076 0.109086 CTCGAATCTATGCCGCCGAT 60.109 55.000 0.00 0.00 0.00 4.18
1789 9077 1.170290 TCTCGAATCTATGCCGCCGA 61.170 55.000 0.00 0.00 0.00 5.54
1790 9078 0.730834 CTCTCGAATCTATGCCGCCG 60.731 60.000 0.00 0.00 0.00 6.46
1791 9079 0.598562 TCTCTCGAATCTATGCCGCC 59.401 55.000 0.00 0.00 0.00 6.13
1792 9080 2.423926 TTCTCTCGAATCTATGCCGC 57.576 50.000 0.00 0.00 0.00 6.53
1793 9081 4.396478 TCCTATTCTCTCGAATCTATGCCG 59.604 45.833 0.00 0.00 40.28 5.69
1794 9082 5.650266 TCTCCTATTCTCTCGAATCTATGCC 59.350 44.000 0.00 0.00 40.28 4.40
1795 9083 6.751514 TCTCCTATTCTCTCGAATCTATGC 57.248 41.667 0.00 0.00 40.28 3.14
1796 9084 8.105097 TGTTCTCCTATTCTCTCGAATCTATG 57.895 38.462 0.00 0.00 40.28 2.23
1797 9085 7.942341 ACTGTTCTCCTATTCTCTCGAATCTAT 59.058 37.037 0.00 0.00 40.28 1.98
1798 9086 7.284074 ACTGTTCTCCTATTCTCTCGAATCTA 58.716 38.462 0.00 0.00 40.28 1.98
1799 9087 6.126409 ACTGTTCTCCTATTCTCTCGAATCT 58.874 40.000 0.00 0.00 40.28 2.40
1800 9088 6.385649 ACTGTTCTCCTATTCTCTCGAATC 57.614 41.667 0.00 0.00 40.28 2.52
1801 9089 6.016610 GCTACTGTTCTCCTATTCTCTCGAAT 60.017 42.308 0.00 0.00 42.34 3.34
1802 9090 5.297278 GCTACTGTTCTCCTATTCTCTCGAA 59.703 44.000 0.00 0.00 0.00 3.71
1803 9091 4.817464 GCTACTGTTCTCCTATTCTCTCGA 59.183 45.833 0.00 0.00 0.00 4.04
1804 9092 4.023536 GGCTACTGTTCTCCTATTCTCTCG 60.024 50.000 0.00 0.00 0.00 4.04
1805 9093 5.009610 CAGGCTACTGTTCTCCTATTCTCTC 59.990 48.000 0.00 0.00 39.92 3.20
1806 9094 4.892934 CAGGCTACTGTTCTCCTATTCTCT 59.107 45.833 0.00 0.00 39.92 3.10
1807 9095 4.890581 TCAGGCTACTGTTCTCCTATTCTC 59.109 45.833 0.00 0.00 45.14 2.87
1808 9096 4.647399 GTCAGGCTACTGTTCTCCTATTCT 59.353 45.833 0.00 0.00 45.14 2.40
1809 9097 4.402793 TGTCAGGCTACTGTTCTCCTATTC 59.597 45.833 0.00 0.00 45.14 1.75
1810 9098 4.353777 TGTCAGGCTACTGTTCTCCTATT 58.646 43.478 0.00 0.00 45.14 1.73
1811 9099 3.982516 TGTCAGGCTACTGTTCTCCTAT 58.017 45.455 0.00 0.00 45.14 2.57
1812 9100 3.451402 TGTCAGGCTACTGTTCTCCTA 57.549 47.619 0.00 0.00 45.14 2.94
1813 9101 2.310779 TGTCAGGCTACTGTTCTCCT 57.689 50.000 0.00 0.00 45.14 3.69
1814 9102 3.067833 GTTTGTCAGGCTACTGTTCTCC 58.932 50.000 0.00 0.00 45.14 3.71
1815 9103 3.728845 TGTTTGTCAGGCTACTGTTCTC 58.271 45.455 0.00 0.00 45.14 2.87
1816 9104 3.733337 CTGTTTGTCAGGCTACTGTTCT 58.267 45.455 0.00 0.00 45.14 3.01
1827 9115 5.666969 TTTATGAACCGACTGTTTGTCAG 57.333 39.130 0.00 0.00 45.60 3.51
1828 9116 6.627395 ATTTTATGAACCGACTGTTTGTCA 57.373 33.333 0.00 0.00 45.60 3.58
1829 9117 7.924103 AAATTTTATGAACCGACTGTTTGTC 57.076 32.000 0.00 0.00 42.06 3.18
1830 9118 8.079809 CCTAAATTTTATGAACCGACTGTTTGT 58.920 33.333 0.00 0.00 37.29 2.83
1831 9119 8.293867 TCCTAAATTTTATGAACCGACTGTTTG 58.706 33.333 0.00 0.00 37.29 2.93
1832 9120 8.398878 TCCTAAATTTTATGAACCGACTGTTT 57.601 30.769 0.00 0.00 37.29 2.83
1833 9121 7.989416 TCCTAAATTTTATGAACCGACTGTT 57.011 32.000 0.00 0.00 40.81 3.16
1834 9122 7.446013 TGTTCCTAAATTTTATGAACCGACTGT 59.554 33.333 23.19 0.00 35.58 3.55
1835 9123 7.812648 TGTTCCTAAATTTTATGAACCGACTG 58.187 34.615 23.19 0.00 35.58 3.51
1836 9124 7.989416 TGTTCCTAAATTTTATGAACCGACT 57.011 32.000 23.19 0.00 35.58 4.18
1872 9160 9.836076 GCTTTACCAAACGAAGTCTATTTTAAT 57.164 29.630 0.00 0.00 45.00 1.40
1873 9161 9.059260 AGCTTTACCAAACGAAGTCTATTTTAA 57.941 29.630 0.00 0.00 45.00 1.52
1874 9162 8.611654 AGCTTTACCAAACGAAGTCTATTTTA 57.388 30.769 0.00 0.00 45.00 1.52
1875 9163 7.444487 AGAGCTTTACCAAACGAAGTCTATTTT 59.556 33.333 0.00 0.00 45.00 1.82
1876 9164 6.935208 AGAGCTTTACCAAACGAAGTCTATTT 59.065 34.615 0.00 0.00 45.00 1.40
1877 9165 6.465084 AGAGCTTTACCAAACGAAGTCTATT 58.535 36.000 0.00 0.00 45.00 1.73
1878 9166 6.038997 AGAGCTTTACCAAACGAAGTCTAT 57.961 37.500 0.00 0.00 45.00 1.98
1879 9167 5.464030 AGAGCTTTACCAAACGAAGTCTA 57.536 39.130 0.00 0.00 45.00 2.59
1880 9168 4.338379 AGAGCTTTACCAAACGAAGTCT 57.662 40.909 0.00 0.00 45.00 3.24
1881 9169 6.402226 CCAATAGAGCTTTACCAAACGAAGTC 60.402 42.308 0.00 0.00 45.00 3.01
1883 9171 5.163754 CCCAATAGAGCTTTACCAAACGAAG 60.164 44.000 0.00 0.00 0.00 3.79
1884 9172 4.698304 CCCAATAGAGCTTTACCAAACGAA 59.302 41.667 0.00 0.00 0.00 3.85
1885 9173 4.258543 CCCAATAGAGCTTTACCAAACGA 58.741 43.478 0.00 0.00 0.00 3.85
1886 9174 3.377172 CCCCAATAGAGCTTTACCAAACG 59.623 47.826 0.00 0.00 0.00 3.60
1887 9175 4.595986 TCCCCAATAGAGCTTTACCAAAC 58.404 43.478 0.00 0.00 0.00 2.93
1888 9176 4.538490 TCTCCCCAATAGAGCTTTACCAAA 59.462 41.667 0.00 0.00 0.00 3.28
1889 9177 4.108570 TCTCCCCAATAGAGCTTTACCAA 58.891 43.478 0.00 0.00 0.00 3.67
1890 9178 3.731431 TCTCCCCAATAGAGCTTTACCA 58.269 45.455 0.00 0.00 0.00 3.25
1891 9179 4.164413 ACTTCTCCCCAATAGAGCTTTACC 59.836 45.833 0.00 0.00 0.00 2.85
1892 9180 5.360649 ACTTCTCCCCAATAGAGCTTTAC 57.639 43.478 0.00 0.00 0.00 2.01
1893 9181 7.182206 ACTTTACTTCTCCCCAATAGAGCTTTA 59.818 37.037 0.00 0.00 0.00 1.85
1894 9182 6.012421 ACTTTACTTCTCCCCAATAGAGCTTT 60.012 38.462 0.00 0.00 0.00 3.51
1895 9183 5.489278 ACTTTACTTCTCCCCAATAGAGCTT 59.511 40.000 0.00 0.00 0.00 3.74
1896 9184 5.033522 ACTTTACTTCTCCCCAATAGAGCT 58.966 41.667 0.00 0.00 0.00 4.09
1897 9185 5.360649 ACTTTACTTCTCCCCAATAGAGC 57.639 43.478 0.00 0.00 0.00 4.09
1898 9186 8.080363 AGTTACTTTACTTCTCCCCAATAGAG 57.920 38.462 0.00 0.00 0.00 2.43
1899 9187 9.551339 TTAGTTACTTTACTTCTCCCCAATAGA 57.449 33.333 0.00 0.00 0.00 1.98
1902 9190 9.871175 TTTTTAGTTACTTTACTTCTCCCCAAT 57.129 29.630 0.00 0.00 0.00 3.16
1903 9191 9.346005 CTTTTTAGTTACTTTACTTCTCCCCAA 57.654 33.333 0.00 0.00 0.00 4.12
1904 9192 8.496916 ACTTTTTAGTTACTTTACTTCTCCCCA 58.503 33.333 0.00 0.00 0.00 4.96
1905 9193 8.915057 ACTTTTTAGTTACTTTACTTCTCCCC 57.085 34.615 0.00 0.00 0.00 4.81
1925 9213 9.325198 GGGTTCTTGATTTCAATTTGTACTTTT 57.675 29.630 0.00 0.00 35.02 2.27
1926 9214 8.482128 TGGGTTCTTGATTTCAATTTGTACTTT 58.518 29.630 0.00 0.00 35.02 2.66
1927 9215 7.926018 GTGGGTTCTTGATTTCAATTTGTACTT 59.074 33.333 0.00 0.00 35.02 2.24
1928 9216 7.069331 TGTGGGTTCTTGATTTCAATTTGTACT 59.931 33.333 0.00 0.00 35.02 2.73
1929 9217 7.206687 TGTGGGTTCTTGATTTCAATTTGTAC 58.793 34.615 0.00 0.00 35.02 2.90
1930 9218 7.353414 TGTGGGTTCTTGATTTCAATTTGTA 57.647 32.000 0.00 0.00 35.02 2.41
1931 9219 6.232581 TGTGGGTTCTTGATTTCAATTTGT 57.767 33.333 0.00 0.00 35.02 2.83
1932 9220 7.733402 ATTGTGGGTTCTTGATTTCAATTTG 57.267 32.000 0.00 0.00 35.02 2.32
1933 9221 8.750515 AAATTGTGGGTTCTTGATTTCAATTT 57.249 26.923 0.00 0.00 38.51 1.82
1934 9222 8.623030 CAAAATTGTGGGTTCTTGATTTCAATT 58.377 29.630 0.00 0.00 36.34 2.32
1935 9223 7.255208 GCAAAATTGTGGGTTCTTGATTTCAAT 60.255 33.333 0.00 0.00 35.02 2.57
1936 9224 6.038050 GCAAAATTGTGGGTTCTTGATTTCAA 59.962 34.615 0.00 0.00 0.00 2.69
1937 9225 5.526846 GCAAAATTGTGGGTTCTTGATTTCA 59.473 36.000 0.00 0.00 0.00 2.69
1938 9226 5.759763 AGCAAAATTGTGGGTTCTTGATTTC 59.240 36.000 0.00 0.00 0.00 2.17
1939 9227 5.683681 AGCAAAATTGTGGGTTCTTGATTT 58.316 33.333 0.00 0.00 0.00 2.17
1940 9228 5.294734 AGCAAAATTGTGGGTTCTTGATT 57.705 34.783 0.00 0.00 0.00 2.57
1941 9229 4.961438 AGCAAAATTGTGGGTTCTTGAT 57.039 36.364 0.00 0.00 0.00 2.57
1942 9230 4.261405 CGTAGCAAAATTGTGGGTTCTTGA 60.261 41.667 0.00 0.00 0.00 3.02
1943 9231 3.980775 CGTAGCAAAATTGTGGGTTCTTG 59.019 43.478 0.00 0.00 0.00 3.02
1944 9232 3.634910 ACGTAGCAAAATTGTGGGTTCTT 59.365 39.130 0.00 0.00 0.00 2.52
1945 9233 3.219281 ACGTAGCAAAATTGTGGGTTCT 58.781 40.909 0.00 0.00 0.00 3.01
1946 9234 3.003897 TGACGTAGCAAAATTGTGGGTTC 59.996 43.478 0.00 0.00 0.00 3.62
1950 9238 5.040635 ACTTTTGACGTAGCAAAATTGTGG 58.959 37.500 13.58 6.43 44.14 4.17
1976 9264 2.034532 TGCAGTGTGGGCTCATGG 59.965 61.111 0.00 0.00 0.00 3.66
2002 9290 8.283992 TCGTCGCAACAAATAGAATAAGAAAAA 58.716 29.630 0.00 0.00 0.00 1.94
2026 9316 3.136808 TCATGTGTGATCTCGTTCTCG 57.863 47.619 0.00 0.00 38.55 4.04
2027 9317 4.686091 TGTTTCATGTGTGATCTCGTTCTC 59.314 41.667 0.00 0.00 33.56 2.87
2028 9318 4.631131 TGTTTCATGTGTGATCTCGTTCT 58.369 39.130 0.00 0.00 33.56 3.01
2029 9319 4.990543 TGTTTCATGTGTGATCTCGTTC 57.009 40.909 0.00 0.00 33.56 3.95
2030 9320 5.947228 AATGTTTCATGTGTGATCTCGTT 57.053 34.783 0.00 0.00 33.56 3.85
2031 9321 5.947228 AAATGTTTCATGTGTGATCTCGT 57.053 34.783 0.00 0.00 33.56 4.18
2057 9347 8.941977 TGTGACGAAATGTAATTGTATAAGCTT 58.058 29.630 3.48 3.48 36.10 3.74
2058 9348 8.487313 TGTGACGAAATGTAATTGTATAAGCT 57.513 30.769 0.00 0.00 36.10 3.74
2059 9349 9.549509 TTTGTGACGAAATGTAATTGTATAAGC 57.450 29.630 0.00 0.00 36.10 3.09
2063 9353 7.392113 TCCCTTTGTGACGAAATGTAATTGTAT 59.608 33.333 0.00 0.00 36.10 2.29
2064 9354 6.711194 TCCCTTTGTGACGAAATGTAATTGTA 59.289 34.615 0.00 0.00 36.10 2.41
2108 9399 4.754372 TTGTAGTCTTCGAACTCGCTTA 57.246 40.909 0.00 0.00 39.60 3.09
2141 9432 2.514803 TCTTGTTTAGGGAAAGCTGCC 58.485 47.619 0.00 0.00 0.00 4.85
2192 9486 7.023575 CCTCAAAAGTTCAAACTGATTATCGG 58.976 38.462 0.00 0.00 39.66 4.18
2206 9500 2.627699 TCCCACATTGCCTCAAAAGTTC 59.372 45.455 0.00 0.00 0.00 3.01
2226 9520 4.322804 CGTAACCGAACTGTCTAACACATC 59.677 45.833 0.00 0.00 32.48 3.06
2235 9529 2.226437 TCTGTACCGTAACCGAACTGTC 59.774 50.000 0.00 0.00 35.63 3.51
2306 9612 4.594854 TTTCCTGCCTGGCCGCAA 62.595 61.111 17.53 0.00 38.56 4.85
2335 9641 3.222603 AGGTTTCAGGCTAACAACCAAG 58.777 45.455 18.75 0.00 41.14 3.61
2394 9700 9.209175 GGTGATCTAATGACCTTATGTAACATC 57.791 37.037 0.00 0.00 0.00 3.06
2479 9786 2.542411 CGACTATACACCACTAACCGCC 60.542 54.545 0.00 0.00 0.00 6.13
2481 9788 3.624861 AGACGACTATACACCACTAACCG 59.375 47.826 0.00 0.00 0.00 4.44
2592 9899 1.804151 GGCTTGAAACGACAGCACATA 59.196 47.619 0.00 0.00 0.00 2.29
2617 9924 8.967664 AGTGCCAATATTATGAATGCATTTTT 57.032 26.923 14.33 6.83 35.94 1.94
2618 9925 8.967664 AAGTGCCAATATTATGAATGCATTTT 57.032 26.923 14.33 7.20 35.94 1.82
2619 9926 8.967664 AAAGTGCCAATATTATGAATGCATTT 57.032 26.923 14.33 0.55 35.94 2.32
2620 9927 8.205512 TGAAAGTGCCAATATTATGAATGCATT 58.794 29.630 12.83 12.83 35.94 3.56
2671 9979 6.844696 ATAGTATCGTTGTACAAATGGCAG 57.155 37.500 10.51 0.00 0.00 4.85
2674 9982 8.540492 GTGAGAATAGTATCGTTGTACAAATGG 58.460 37.037 10.51 3.09 0.00 3.16
2722 10030 6.873997 ACAAATACACCTACTTGATCGATCA 58.126 36.000 23.99 23.99 34.44 2.92
2730 10038 4.378046 GCCGTGAACAAATACACCTACTTG 60.378 45.833 0.00 0.00 34.05 3.16
2737 10045 4.541779 TCAAATGCCGTGAACAAATACAC 58.458 39.130 0.00 0.00 0.00 2.90
2738 10046 4.837896 TCAAATGCCGTGAACAAATACA 57.162 36.364 0.00 0.00 0.00 2.29
2741 10049 3.989167 CACATCAAATGCCGTGAACAAAT 59.011 39.130 0.00 0.00 0.00 2.32
2759 10067 4.022762 GTCTATCGTCAGCTACCATCACAT 60.023 45.833 0.00 0.00 0.00 3.21
2775 10083 0.179089 AGCAGGCAAGCAGTCTATCG 60.179 55.000 4.78 0.00 36.85 2.92
2789 10097 1.201647 CTCTGTGAAAATGGCAGCAGG 59.798 52.381 0.00 0.00 0.00 4.85
2790 10098 1.201647 CCTCTGTGAAAATGGCAGCAG 59.798 52.381 0.00 0.00 0.00 4.24
2824 10132 2.368221 GCAGATTAGGCTCCATCTCTGT 59.632 50.000 6.22 0.00 34.13 3.41
2890 10198 0.390860 CGATCGGCTTCTCCATTCCT 59.609 55.000 7.38 0.00 34.01 3.36
2893 10201 0.105039 GGACGATCGGCTTCTCCATT 59.895 55.000 22.46 0.00 34.01 3.16
2909 10217 1.070786 TCTTGAGGTTGCCGTGGAC 59.929 57.895 0.00 0.00 0.00 4.02
2944 10252 2.811317 CACTCGAAGCTGGCGTCC 60.811 66.667 8.80 0.00 0.00 4.79
3405 10713 6.078664 TGGTGAACCTACCCACATTTAATTT 58.921 36.000 0.37 0.00 40.09 1.82
3446 10823 1.968493 AGTCGTTCCTTGAGCCTTGTA 59.032 47.619 0.00 0.00 0.00 2.41
3480 10862 2.284190 GTAGCTCCATTCTCCAACTGC 58.716 52.381 0.00 0.00 0.00 4.40
3497 10883 3.349488 TCCGTGATATGTGAAGCGTAG 57.651 47.619 0.00 0.00 0.00 3.51
3498 10884 3.786516 TTCCGTGATATGTGAAGCGTA 57.213 42.857 0.00 0.00 0.00 4.42
3514 11321 5.250235 ACACTCTGACTATACACATTCCG 57.750 43.478 0.00 0.00 0.00 4.30
3716 11527 8.359875 ACTCCTACCAATCATATCTGATACTG 57.640 38.462 0.00 0.98 41.34 2.74
3757 12357 1.745115 ATGCACCGGGAACATCACG 60.745 57.895 6.32 0.00 44.16 4.35
3782 12382 1.452025 CGTTGTCAGTGCGTAGAACAG 59.548 52.381 0.00 0.00 0.00 3.16
3801 12414 0.526524 GAATCACTCTCTGCCGACCG 60.527 60.000 0.00 0.00 0.00 4.79
3823 12436 2.431782 CACTGGGCATAATTCCTTTGGG 59.568 50.000 0.00 0.00 0.00 4.12
3876 14872 4.202326 GGGACTAGAGACTAGAGGACAGAG 60.202 54.167 11.94 0.00 0.00 3.35
3892 14888 6.472686 ACTAATGCTTCTGTTAGGGACTAG 57.527 41.667 0.00 0.00 44.25 2.57
3893 14889 6.869206 AACTAATGCTTCTGTTAGGGACTA 57.131 37.500 0.00 0.00 41.75 2.59
3906 14903 8.540388 TCTTGGTATCAGAGTAAACTAATGCTT 58.460 33.333 0.00 0.00 0.00 3.91
3995 14995 5.965922 AGAGACCAAAAGTTGTTTTTCAGG 58.034 37.500 0.00 0.00 36.87 3.86
3997 14997 6.834168 AGAGAGACCAAAAGTTGTTTTTCA 57.166 33.333 0.00 0.00 36.87 2.69
3998 14998 7.008357 CGAAAGAGAGACCAAAAGTTGTTTTTC 59.992 37.037 0.00 0.00 36.87 2.29
3999 14999 6.806739 CGAAAGAGAGACCAAAAGTTGTTTTT 59.193 34.615 0.00 0.00 39.55 1.94
4001 15001 5.676331 GCGAAAGAGAGACCAAAAGTTGTTT 60.676 40.000 0.00 0.00 0.00 2.83
4002 15002 4.201920 GCGAAAGAGAGACCAAAAGTTGTT 60.202 41.667 0.00 0.00 0.00 2.83
4003 15003 3.312697 GCGAAAGAGAGACCAAAAGTTGT 59.687 43.478 0.00 0.00 0.00 3.32
4004 15004 3.304057 GGCGAAAGAGAGACCAAAAGTTG 60.304 47.826 0.00 0.00 0.00 3.16
4005 15005 2.879026 GGCGAAAGAGAGACCAAAAGTT 59.121 45.455 0.00 0.00 0.00 2.66
4006 15006 2.495084 GGCGAAAGAGAGACCAAAAGT 58.505 47.619 0.00 0.00 0.00 2.66
4007 15007 1.461127 CGGCGAAAGAGAGACCAAAAG 59.539 52.381 0.00 0.00 0.00 2.27
4008 15008 1.069513 TCGGCGAAAGAGAGACCAAAA 59.930 47.619 7.35 0.00 0.00 2.44
4009 15009 0.677288 TCGGCGAAAGAGAGACCAAA 59.323 50.000 7.35 0.00 0.00 3.28
4010 15010 0.038526 GTCGGCGAAAGAGAGACCAA 60.039 55.000 12.92 0.00 0.00 3.67
4012 15012 0.733223 GTGTCGGCGAAAGAGAGACC 60.733 60.000 12.92 0.00 31.11 3.85
4013 15013 0.733223 GGTGTCGGCGAAAGAGAGAC 60.733 60.000 12.92 0.00 34.53 3.36
4083 15083 8.984764 CGATTACCATGGAGATTACGAAATAAA 58.015 33.333 21.47 0.00 0.00 1.40
4084 15084 7.117236 GCGATTACCATGGAGATTACGAAATAA 59.883 37.037 21.47 1.91 0.00 1.40
4085 15085 6.588756 GCGATTACCATGGAGATTACGAAATA 59.411 38.462 21.47 0.00 0.00 1.40
4189 15210 5.584913 TCTCTTCAAGGACAAGGAGACTAT 58.415 41.667 0.00 0.00 42.68 2.12
4209 15230 3.013219 GGCTTTCATGTTTCTCCCTCTC 58.987 50.000 0.00 0.00 0.00 3.20
4210 15231 2.376518 TGGCTTTCATGTTTCTCCCTCT 59.623 45.455 0.00 0.00 0.00 3.69
4211 15232 2.795329 TGGCTTTCATGTTTCTCCCTC 58.205 47.619 0.00 0.00 0.00 4.30
4212 15233 2.978156 TGGCTTTCATGTTTCTCCCT 57.022 45.000 0.00 0.00 0.00 4.20
4213 15234 3.515330 CATGGCTTTCATGTTTCTCCC 57.485 47.619 0.00 0.00 46.11 4.30
4256 15285 2.107204 GCCTCACCCACCTGATAATCAT 59.893 50.000 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.