Multiple sequence alignment - TraesCS6D01G226200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G226200 chr6D 100.000 2657 0 0 1 2657 317974179 317971523 0.000000e+00 4907
1 TraesCS6D01G226200 chr6D 90.484 620 55 1 1 616 181468488 181469107 0.000000e+00 815
2 TraesCS6D01G226200 chr6D 94.724 417 18 2 2242 2657 317945566 317945153 0.000000e+00 645
3 TraesCS6D01G226200 chr6D 94.355 124 4 1 1514 1634 345104571 345104448 1.260000e-43 187
4 TraesCS6D01G226200 chr5A 96.446 1013 33 1 625 1634 16544035 16545047 0.000000e+00 1668
5 TraesCS6D01G226200 chr5A 96.150 1013 36 1 625 1634 420185183 420186195 0.000000e+00 1652
6 TraesCS6D01G226200 chrUn 96.347 1013 34 1 625 1634 378556020 378557032 0.000000e+00 1663
7 TraesCS6D01G226200 chrUn 96.607 619 18 2 1633 2248 257861661 257862279 0.000000e+00 1024
8 TraesCS6D01G226200 chrUn 96.452 620 18 2 1633 2248 285745368 285745987 0.000000e+00 1020
9 TraesCS6D01G226200 chrUn 98.214 56 1 0 1579 1634 417899046 417899101 6.050000e-17 99
10 TraesCS6D01G226200 chr7B 96.347 1013 34 1 625 1634 742949257 742948245 0.000000e+00 1663
11 TraesCS6D01G226200 chr7B 95.953 1013 38 1 625 1634 716784088 716785100 0.000000e+00 1640
12 TraesCS6D01G226200 chr7B 95.462 617 27 1 1633 2248 139539938 139539322 0.000000e+00 983
13 TraesCS6D01G226200 chr7A 96.347 1013 33 2 625 1634 60084418 60085429 0.000000e+00 1663
14 TraesCS6D01G226200 chr7A 96.150 1013 36 1 625 1634 60169286 60168274 0.000000e+00 1652
15 TraesCS6D01G226200 chr2A 96.150 1013 36 1 625 1634 755480030 755481042 0.000000e+00 1652
16 TraesCS6D01G226200 chr1B 95.755 1013 39 2 625 1634 583562067 583561056 0.000000e+00 1629
17 TraesCS6D01G226200 chr4D 96.759 617 19 1 1633 2248 123497294 123496678 0.000000e+00 1027
18 TraesCS6D01G226200 chr4D 95.307 618 23 3 1633 2248 450895645 450895032 0.000000e+00 976
19 TraesCS6D01G226200 chr4D 90.476 630 56 3 1 627 94821771 94821143 0.000000e+00 828
20 TraesCS6D01G226200 chr4D 88.498 626 69 3 1 624 374132850 374132226 0.000000e+00 754
21 TraesCS6D01G226200 chr4D 88.254 630 68 3 1 625 82204756 82204128 0.000000e+00 749
22 TraesCS6D01G226200 chr7D 96.613 620 17 2 1633 2248 635626857 635627476 0.000000e+00 1026
23 TraesCS6D01G226200 chr7D 96.607 619 18 2 1633 2248 381888095 381888713 0.000000e+00 1024
24 TraesCS6D01G226200 chr7D 96.452 620 18 2 1633 2248 203536255 203536874 0.000000e+00 1020
25 TraesCS6D01G226200 chr7D 88.170 634 65 6 1 625 139382132 139381500 0.000000e+00 747
26 TraesCS6D01G226200 chr7D 90.736 421 32 4 2244 2657 100024840 100024420 2.990000e-154 555
27 TraesCS6D01G226200 chr3D 96.284 619 20 2 1633 2248 399732441 399733059 0.000000e+00 1013
28 TraesCS6D01G226200 chr3D 88.644 634 64 7 1 628 297040504 297039873 0.000000e+00 765
29 TraesCS6D01G226200 chr3D 88.383 637 61 6 1 625 324214501 324215136 0.000000e+00 754
30 TraesCS6D01G226200 chr3D 91.346 416 29 5 2249 2657 74589365 74588950 1.790000e-156 562
31 TraesCS6D01G226200 chr1A 90.096 626 51 8 1 618 109713702 109714324 0.000000e+00 802
32 TraesCS6D01G226200 chr2D 88.907 622 64 4 1 618 333247552 333248172 0.000000e+00 761
33 TraesCS6D01G226200 chr2D 90.094 424 33 6 2243 2657 510859094 510859517 2.330000e-150 542
34 TraesCS6D01G226200 chr2D 89.928 417 34 5 2249 2657 510838799 510839215 5.040000e-147 531
35 TraesCS6D01G226200 chr5D 91.607 417 25 7 2249 2657 373602828 373603242 3.840000e-158 568
36 TraesCS6D01G226200 chr5B 90.118 425 29 10 2243 2656 444542532 444542954 8.370000e-150 540
37 TraesCS6D01G226200 chr6B 90.144 416 34 4 2249 2657 640761870 640761455 3.890000e-148 534
38 TraesCS6D01G226200 chr1D 90.191 418 30 7 2249 2657 371441522 371441937 3.890000e-148 534


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G226200 chr6D 317971523 317974179 2656 True 4907 4907 100.000 1 2657 1 chr6D.!!$R2 2656
1 TraesCS6D01G226200 chr6D 181468488 181469107 619 False 815 815 90.484 1 616 1 chr6D.!!$F1 615
2 TraesCS6D01G226200 chr5A 16544035 16545047 1012 False 1668 1668 96.446 625 1634 1 chr5A.!!$F1 1009
3 TraesCS6D01G226200 chr5A 420185183 420186195 1012 False 1652 1652 96.150 625 1634 1 chr5A.!!$F2 1009
4 TraesCS6D01G226200 chrUn 378556020 378557032 1012 False 1663 1663 96.347 625 1634 1 chrUn.!!$F3 1009
5 TraesCS6D01G226200 chrUn 257861661 257862279 618 False 1024 1024 96.607 1633 2248 1 chrUn.!!$F1 615
6 TraesCS6D01G226200 chrUn 285745368 285745987 619 False 1020 1020 96.452 1633 2248 1 chrUn.!!$F2 615
7 TraesCS6D01G226200 chr7B 742948245 742949257 1012 True 1663 1663 96.347 625 1634 1 chr7B.!!$R2 1009
8 TraesCS6D01G226200 chr7B 716784088 716785100 1012 False 1640 1640 95.953 625 1634 1 chr7B.!!$F1 1009
9 TraesCS6D01G226200 chr7B 139539322 139539938 616 True 983 983 95.462 1633 2248 1 chr7B.!!$R1 615
10 TraesCS6D01G226200 chr7A 60084418 60085429 1011 False 1663 1663 96.347 625 1634 1 chr7A.!!$F1 1009
11 TraesCS6D01G226200 chr7A 60168274 60169286 1012 True 1652 1652 96.150 625 1634 1 chr7A.!!$R1 1009
12 TraesCS6D01G226200 chr2A 755480030 755481042 1012 False 1652 1652 96.150 625 1634 1 chr2A.!!$F1 1009
13 TraesCS6D01G226200 chr1B 583561056 583562067 1011 True 1629 1629 95.755 625 1634 1 chr1B.!!$R1 1009
14 TraesCS6D01G226200 chr4D 123496678 123497294 616 True 1027 1027 96.759 1633 2248 1 chr4D.!!$R3 615
15 TraesCS6D01G226200 chr4D 450895032 450895645 613 True 976 976 95.307 1633 2248 1 chr4D.!!$R5 615
16 TraesCS6D01G226200 chr4D 94821143 94821771 628 True 828 828 90.476 1 627 1 chr4D.!!$R2 626
17 TraesCS6D01G226200 chr4D 374132226 374132850 624 True 754 754 88.498 1 624 1 chr4D.!!$R4 623
18 TraesCS6D01G226200 chr4D 82204128 82204756 628 True 749 749 88.254 1 625 1 chr4D.!!$R1 624
19 TraesCS6D01G226200 chr7D 635626857 635627476 619 False 1026 1026 96.613 1633 2248 1 chr7D.!!$F3 615
20 TraesCS6D01G226200 chr7D 381888095 381888713 618 False 1024 1024 96.607 1633 2248 1 chr7D.!!$F2 615
21 TraesCS6D01G226200 chr7D 203536255 203536874 619 False 1020 1020 96.452 1633 2248 1 chr7D.!!$F1 615
22 TraesCS6D01G226200 chr7D 139381500 139382132 632 True 747 747 88.170 1 625 1 chr7D.!!$R2 624
23 TraesCS6D01G226200 chr3D 399732441 399733059 618 False 1013 1013 96.284 1633 2248 1 chr3D.!!$F2 615
24 TraesCS6D01G226200 chr3D 297039873 297040504 631 True 765 765 88.644 1 628 1 chr3D.!!$R2 627
25 TraesCS6D01G226200 chr3D 324214501 324215136 635 False 754 754 88.383 1 625 1 chr3D.!!$F1 624
26 TraesCS6D01G226200 chr1A 109713702 109714324 622 False 802 802 90.096 1 618 1 chr1A.!!$F1 617
27 TraesCS6D01G226200 chr2D 333247552 333248172 620 False 761 761 88.907 1 618 1 chr2D.!!$F1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 161 0.178947 AACGGCCAATTTGAAGGGGA 60.179 50.0 2.24 0.0 0.0 4.81 F
528 547 0.242825 CGCGAGGGTCTTGAGTGTTA 59.757 55.0 0.00 0.0 0.0 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1269 1288 0.733150 CAGACCAGACGCGACTGATA 59.267 55.0 34.27 0.0 39.94 2.15 R
2492 2519 0.034059 ACAAGAACACCTCGCCTCAG 59.966 55.0 0.00 0.0 0.00 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 50 0.463833 GTGTGGGGATGGTCCGAATC 60.464 60.000 0.00 0.00 37.43 2.52
49 51 1.227556 GTGGGGATGGTCCGAATCG 60.228 63.158 0.00 0.00 37.43 3.34
54 56 1.069258 GATGGTCCGAATCGTCCCC 59.931 63.158 0.82 0.00 0.00 4.81
115 125 3.010250 GGTCCTCTTCCCAAATGTTAGGT 59.990 47.826 0.00 0.00 0.00 3.08
150 161 0.178947 AACGGCCAATTTGAAGGGGA 60.179 50.000 2.24 0.00 0.00 4.81
180 191 6.360370 AGTACAAGCTATCCTGACAAAAGA 57.640 37.500 0.00 0.00 0.00 2.52
322 341 1.508808 CTCGCCTACGCCTACTCCTC 61.509 65.000 0.00 0.00 39.84 3.71
347 366 3.303791 GCACCAAAGAGGAAACAAGTACG 60.304 47.826 0.00 0.00 41.22 3.67
350 369 4.202284 ACCAAAGAGGAAACAAGTACGCTA 60.202 41.667 0.00 0.00 41.22 4.26
351 370 4.935808 CCAAAGAGGAAACAAGTACGCTAT 59.064 41.667 0.00 0.00 41.22 2.97
431 450 1.454663 GCCCCTTGCCTTGATCTCC 60.455 63.158 0.00 0.00 0.00 3.71
440 459 1.341156 CCTTGATCTCCCCGCTCCTT 61.341 60.000 0.00 0.00 0.00 3.36
443 462 2.688666 ATCTCCCCGCTCCTTGCA 60.689 61.111 0.00 0.00 43.06 4.08
528 547 0.242825 CGCGAGGGTCTTGAGTGTTA 59.757 55.000 0.00 0.00 0.00 2.41
629 648 0.817634 CCAGAACGGCAACAGGTTCA 60.818 55.000 6.67 0.00 43.79 3.18
637 656 3.054655 ACGGCAACAGGTTCATATAGGTT 60.055 43.478 0.00 0.00 0.00 3.50
661 680 6.693466 TGTGGTCAACGAGAACTTATAATCA 58.307 36.000 0.00 0.00 34.06 2.57
705 724 9.958234 ATAACTGCAATAGCTATCGATACTATG 57.042 33.333 19.39 15.80 42.74 2.23
709 728 9.958234 CTGCAATAGCTATCGATACTATGTTAT 57.042 33.333 19.39 9.29 42.74 1.89
735 754 2.978156 AGCAAATGAACTCAAGGGGA 57.022 45.000 0.00 0.00 0.00 4.81
782 801 3.993736 TGTGTCTATGTTGTGATTGGACG 59.006 43.478 0.00 0.00 0.00 4.79
865 884 1.614051 CCATTCTTGTAGCAGCCACCA 60.614 52.381 0.00 0.00 0.00 4.17
1077 1096 8.388853 GTTTTCTATTTACATTCCCGTCTCTTC 58.611 37.037 0.00 0.00 0.00 2.87
1098 1117 5.516360 TCGAAAGAGCCGCTAAACGATCA 62.516 47.826 0.00 0.00 39.06 2.92
1177 1196 0.666913 CGTATCGGCCTATATCCCCG 59.333 60.000 0.00 0.00 43.21 5.73
1236 1255 4.894784 TGGAAACAGAGCTCTTTTATCGT 58.105 39.130 15.27 4.74 35.01 3.73
1258 1277 6.046593 CGTGGAATTAGACCAGCTATTAACA 58.953 40.000 0.00 0.00 38.14 2.41
1269 1288 6.605119 ACCAGCTATTAACATTGGCTTATCT 58.395 36.000 0.00 0.00 32.10 1.98
1270 1289 7.745717 ACCAGCTATTAACATTGGCTTATCTA 58.254 34.615 0.00 0.00 32.10 1.98
1282 1301 2.226912 GGCTTATCTATCAGTCGCGTCT 59.773 50.000 5.77 1.88 0.00 4.18
1408 1427 1.742880 GATGCTGCGACTCAGGCAA 60.743 57.895 0.00 0.00 43.06 4.52
1415 1434 1.134995 TGCGACTCAGGCAATACTCAG 60.135 52.381 0.00 0.00 37.49 3.35
1423 1442 3.954904 TCAGGCAATACTCAGTAGAGGTC 59.045 47.826 0.00 0.00 46.44 3.85
1510 1529 3.264947 GTGATCTATGCTGCTGTCAACA 58.735 45.455 0.00 0.00 0.00 3.33
1537 1556 2.159099 TGTGATCGAATGCCACTAGACC 60.159 50.000 0.00 0.00 0.00 3.85
1630 1652 5.334646 GGTGGCTTAACTAACGAAAGAAAGG 60.335 44.000 0.00 0.00 0.00 3.11
1883 1910 7.826918 AATAAGGTTTTTACTGCCTGTTGTA 57.173 32.000 0.00 0.00 32.16 2.41
1995 2022 9.899226 AGCTACATTCTTCATTTGTTTTTAGTC 57.101 29.630 0.00 0.00 0.00 2.59
2158 2185 2.859526 TGCGATGACAACAAGCAAAA 57.140 40.000 0.00 0.00 39.40 2.44
2248 2275 3.932545 TGCAAATAACTGAACGCCAAT 57.067 38.095 0.00 0.00 0.00 3.16
2249 2276 3.573598 TGCAAATAACTGAACGCCAATG 58.426 40.909 0.00 0.00 0.00 2.82
2250 2277 3.005261 TGCAAATAACTGAACGCCAATGT 59.995 39.130 0.00 0.00 0.00 2.71
2251 2278 3.608073 GCAAATAACTGAACGCCAATGTC 59.392 43.478 0.00 0.00 0.00 3.06
2252 2279 3.740044 AATAACTGAACGCCAATGTCG 57.260 42.857 0.00 0.00 0.00 4.35
2253 2280 1.434555 TAACTGAACGCCAATGTCGG 58.565 50.000 0.00 0.00 0.00 4.79
2254 2281 0.250124 AACTGAACGCCAATGTCGGA 60.250 50.000 0.00 0.00 0.00 4.55
2255 2282 0.036388 ACTGAACGCCAATGTCGGAT 60.036 50.000 0.00 0.00 0.00 4.18
2256 2283 0.652592 CTGAACGCCAATGTCGGATC 59.347 55.000 0.00 0.00 0.00 3.36
2257 2284 0.036858 TGAACGCCAATGTCGGATCA 60.037 50.000 0.00 0.00 0.00 2.92
2258 2285 0.373716 GAACGCCAATGTCGGATCAC 59.626 55.000 0.00 0.00 0.00 3.06
2259 2286 1.358725 AACGCCAATGTCGGATCACG 61.359 55.000 0.00 0.00 46.11 4.35
2260 2287 2.525248 CGCCAATGTCGGATCACGG 61.525 63.158 0.00 0.00 44.45 4.94
2261 2288 2.180204 GCCAATGTCGGATCACGGG 61.180 63.158 0.00 0.00 44.45 5.28
2262 2289 1.220749 CCAATGTCGGATCACGGGT 59.779 57.895 0.00 0.00 44.45 5.28
2263 2290 0.392461 CCAATGTCGGATCACGGGTT 60.392 55.000 0.00 0.00 44.45 4.11
2264 2291 1.006832 CAATGTCGGATCACGGGTTC 58.993 55.000 0.00 0.00 44.45 3.62
2265 2292 0.107848 AATGTCGGATCACGGGTTCC 60.108 55.000 4.56 4.56 44.45 3.62
2277 2304 3.362262 GGTTCCGGCAAAACCCTC 58.638 61.111 11.64 0.00 40.29 4.30
2278 2305 1.529713 GGTTCCGGCAAAACCCTCA 60.530 57.895 11.64 0.00 40.29 3.86
2279 2306 1.110518 GGTTCCGGCAAAACCCTCAA 61.111 55.000 11.64 0.00 40.29 3.02
2280 2307 0.313987 GTTCCGGCAAAACCCTCAAG 59.686 55.000 0.00 0.00 33.26 3.02
2281 2308 0.825840 TTCCGGCAAAACCCTCAAGG 60.826 55.000 0.00 0.00 43.78 3.61
2292 2319 1.512926 CCCTCAAGGTTCGAACACTG 58.487 55.000 28.24 22.59 0.00 3.66
2293 2320 1.512926 CCTCAAGGTTCGAACACTGG 58.487 55.000 28.24 19.45 0.00 4.00
2294 2321 1.512926 CTCAAGGTTCGAACACTGGG 58.487 55.000 28.24 19.89 0.00 4.45
2295 2322 0.107831 TCAAGGTTCGAACACTGGGG 59.892 55.000 28.24 15.34 0.00 4.96
2296 2323 0.179029 CAAGGTTCGAACACTGGGGT 60.179 55.000 28.24 6.73 0.00 4.95
2298 2325 2.258726 GGTTCGAACACTGGGGTGC 61.259 63.158 28.24 5.21 46.57 5.01
2299 2326 2.280524 TTCGAACACTGGGGTGCG 60.281 61.111 0.00 0.00 46.57 5.34
2300 2327 4.980805 TCGAACACTGGGGTGCGC 62.981 66.667 0.00 0.00 46.57 6.09
2302 2329 3.660111 GAACACTGGGGTGCGCAC 61.660 66.667 32.15 32.15 46.57 5.34
2306 2333 4.988598 ACTGGGGTGCGCACGAAG 62.989 66.667 32.35 28.23 0.00 3.79
2307 2334 4.680237 CTGGGGTGCGCACGAAGA 62.680 66.667 32.35 15.93 0.00 2.87
2308 2335 3.958147 CTGGGGTGCGCACGAAGAT 62.958 63.158 32.35 0.00 0.00 2.40
2309 2336 3.195698 GGGGTGCGCACGAAGATC 61.196 66.667 32.35 18.05 0.00 2.75
2310 2337 2.125512 GGGTGCGCACGAAGATCT 60.126 61.111 32.35 0.00 0.00 2.75
2311 2338 2.167861 GGGTGCGCACGAAGATCTC 61.168 63.158 32.35 16.60 0.00 2.75
2312 2339 1.153745 GGTGCGCACGAAGATCTCT 60.154 57.895 32.35 0.00 0.00 3.10
2313 2340 1.142778 GGTGCGCACGAAGATCTCTC 61.143 60.000 32.35 12.11 0.00 3.20
2314 2341 1.139734 TGCGCACGAAGATCTCTCC 59.860 57.895 5.66 0.00 0.00 3.71
2315 2342 1.315981 TGCGCACGAAGATCTCTCCT 61.316 55.000 5.66 0.00 0.00 3.69
2316 2343 0.593773 GCGCACGAAGATCTCTCCTC 60.594 60.000 0.30 0.00 0.00 3.71
2317 2344 1.021202 CGCACGAAGATCTCTCCTCT 58.979 55.000 0.00 0.00 0.00 3.69
2318 2345 1.002900 CGCACGAAGATCTCTCCTCTC 60.003 57.143 0.00 0.00 0.00 3.20
2319 2346 1.336755 GCACGAAGATCTCTCCTCTCC 59.663 57.143 0.00 0.00 0.00 3.71
2320 2347 1.953686 CACGAAGATCTCTCCTCTCCC 59.046 57.143 0.00 0.00 0.00 4.30
2321 2348 1.566703 ACGAAGATCTCTCCTCTCCCA 59.433 52.381 0.00 0.00 0.00 4.37
2322 2349 2.024846 ACGAAGATCTCTCCTCTCCCAA 60.025 50.000 0.00 0.00 0.00 4.12
2323 2350 2.622942 CGAAGATCTCTCCTCTCCCAAG 59.377 54.545 0.00 0.00 0.00 3.61
2324 2351 2.086610 AGATCTCTCCTCTCCCAAGC 57.913 55.000 0.00 0.00 0.00 4.01
2325 2352 1.575304 AGATCTCTCCTCTCCCAAGCT 59.425 52.381 0.00 0.00 0.00 3.74
2326 2353 1.963515 GATCTCTCCTCTCCCAAGCTC 59.036 57.143 0.00 0.00 0.00 4.09
2327 2354 1.006813 TCTCTCCTCTCCCAAGCTCT 58.993 55.000 0.00 0.00 0.00 4.09
2328 2355 1.064017 TCTCTCCTCTCCCAAGCTCTC 60.064 57.143 0.00 0.00 0.00 3.20
2329 2356 0.395036 TCTCCTCTCCCAAGCTCTCG 60.395 60.000 0.00 0.00 0.00 4.04
2330 2357 2.015227 CTCCTCTCCCAAGCTCTCGC 62.015 65.000 0.00 0.00 0.00 5.03
2331 2358 2.354401 CCTCTCCCAAGCTCTCGCA 61.354 63.158 0.00 0.00 39.10 5.10
2332 2359 1.153667 CTCTCCCAAGCTCTCGCAC 60.154 63.158 0.00 0.00 39.10 5.34
2333 2360 1.603236 CTCTCCCAAGCTCTCGCACT 61.603 60.000 0.00 0.00 39.10 4.40
2334 2361 1.153667 CTCCCAAGCTCTCGCACTC 60.154 63.158 0.00 0.00 39.10 3.51
2335 2362 2.125350 CCCAAGCTCTCGCACTCC 60.125 66.667 0.00 0.00 39.10 3.85
2336 2363 2.659016 CCAAGCTCTCGCACTCCA 59.341 61.111 0.00 0.00 39.10 3.86
2337 2364 1.739562 CCAAGCTCTCGCACTCCAC 60.740 63.158 0.00 0.00 39.10 4.02
2338 2365 2.091112 CAAGCTCTCGCACTCCACG 61.091 63.158 0.00 0.00 39.10 4.94
2339 2366 2.268802 AAGCTCTCGCACTCCACGA 61.269 57.895 0.00 0.00 39.10 4.35
2340 2367 1.599606 AAGCTCTCGCACTCCACGAT 61.600 55.000 0.00 0.00 39.12 3.73
2341 2368 1.587613 GCTCTCGCACTCCACGATC 60.588 63.158 0.00 0.00 39.12 3.69
2342 2369 1.999071 GCTCTCGCACTCCACGATCT 61.999 60.000 0.00 0.00 39.12 2.75
2343 2370 1.300481 CTCTCGCACTCCACGATCTA 58.700 55.000 0.00 0.00 39.12 1.98
2344 2371 1.262950 CTCTCGCACTCCACGATCTAG 59.737 57.143 0.00 0.00 39.12 2.43
2345 2372 0.317436 CTCGCACTCCACGATCTAGC 60.317 60.000 0.00 0.00 39.12 3.42
2346 2373 1.029947 TCGCACTCCACGATCTAGCA 61.030 55.000 0.00 0.00 33.96 3.49
2347 2374 0.593518 CGCACTCCACGATCTAGCAG 60.594 60.000 0.00 0.00 0.00 4.24
2348 2375 0.741326 GCACTCCACGATCTAGCAGA 59.259 55.000 0.00 0.00 0.00 4.26
2349 2376 1.535015 GCACTCCACGATCTAGCAGAC 60.535 57.143 0.00 0.00 0.00 3.51
2350 2377 2.020720 CACTCCACGATCTAGCAGACT 58.979 52.381 0.00 0.00 0.00 3.24
2351 2378 3.206964 CACTCCACGATCTAGCAGACTA 58.793 50.000 0.00 0.00 0.00 2.59
2352 2379 3.628032 CACTCCACGATCTAGCAGACTAA 59.372 47.826 0.00 0.00 0.00 2.24
2353 2380 3.628487 ACTCCACGATCTAGCAGACTAAC 59.372 47.826 0.00 0.00 0.00 2.34
2354 2381 3.880490 CTCCACGATCTAGCAGACTAACT 59.120 47.826 0.00 0.00 0.00 2.24
2355 2382 3.878103 TCCACGATCTAGCAGACTAACTC 59.122 47.826 0.00 0.00 0.00 3.01
2356 2383 3.303461 CCACGATCTAGCAGACTAACTCG 60.303 52.174 0.00 0.00 37.90 4.18
2357 2384 2.288458 ACGATCTAGCAGACTAACTCGC 59.712 50.000 0.00 0.00 36.52 5.03
2358 2385 2.350007 CGATCTAGCAGACTAACTCGCC 60.350 54.545 0.00 0.00 30.38 5.54
2359 2386 1.015109 TCTAGCAGACTAACTCGCCG 58.985 55.000 0.00 0.00 0.00 6.46
2360 2387 1.015109 CTAGCAGACTAACTCGCCGA 58.985 55.000 0.00 0.00 0.00 5.54
2361 2388 1.400846 CTAGCAGACTAACTCGCCGAA 59.599 52.381 0.00 0.00 0.00 4.30
2362 2389 0.109226 AGCAGACTAACTCGCCGAAC 60.109 55.000 0.00 0.00 0.00 3.95
2363 2390 1.077089 GCAGACTAACTCGCCGAACC 61.077 60.000 0.00 0.00 0.00 3.62
2364 2391 0.458025 CAGACTAACTCGCCGAACCC 60.458 60.000 0.00 0.00 0.00 4.11
2365 2392 0.896940 AGACTAACTCGCCGAACCCA 60.897 55.000 0.00 0.00 0.00 4.51
2366 2393 0.037975 GACTAACTCGCCGAACCCAA 60.038 55.000 0.00 0.00 0.00 4.12
2367 2394 0.393820 ACTAACTCGCCGAACCCAAA 59.606 50.000 0.00 0.00 0.00 3.28
2368 2395 1.076332 CTAACTCGCCGAACCCAAAG 58.924 55.000 0.00 0.00 0.00 2.77
2369 2396 0.680618 TAACTCGCCGAACCCAAAGA 59.319 50.000 0.00 0.00 0.00 2.52
2370 2397 0.179040 AACTCGCCGAACCCAAAGAA 60.179 50.000 0.00 0.00 0.00 2.52
2371 2398 0.883370 ACTCGCCGAACCCAAAGAAC 60.883 55.000 0.00 0.00 0.00 3.01
2372 2399 0.882927 CTCGCCGAACCCAAAGAACA 60.883 55.000 0.00 0.00 0.00 3.18
2373 2400 1.161563 TCGCCGAACCCAAAGAACAC 61.162 55.000 0.00 0.00 0.00 3.32
2374 2401 1.440938 CGCCGAACCCAAAGAACACA 61.441 55.000 0.00 0.00 0.00 3.72
2375 2402 0.310854 GCCGAACCCAAAGAACACAG 59.689 55.000 0.00 0.00 0.00 3.66
2376 2403 1.961793 CCGAACCCAAAGAACACAGA 58.038 50.000 0.00 0.00 0.00 3.41
2377 2404 1.873591 CCGAACCCAAAGAACACAGAG 59.126 52.381 0.00 0.00 0.00 3.35
2378 2405 2.484770 CCGAACCCAAAGAACACAGAGA 60.485 50.000 0.00 0.00 0.00 3.10
2379 2406 2.544267 CGAACCCAAAGAACACAGAGAC 59.456 50.000 0.00 0.00 0.00 3.36
2380 2407 3.541632 GAACCCAAAGAACACAGAGACA 58.458 45.455 0.00 0.00 0.00 3.41
2381 2408 2.919228 ACCCAAAGAACACAGAGACAC 58.081 47.619 0.00 0.00 0.00 3.67
2382 2409 2.238646 ACCCAAAGAACACAGAGACACA 59.761 45.455 0.00 0.00 0.00 3.72
2383 2410 3.278574 CCCAAAGAACACAGAGACACAA 58.721 45.455 0.00 0.00 0.00 3.33
2384 2411 3.313526 CCCAAAGAACACAGAGACACAAG 59.686 47.826 0.00 0.00 0.00 3.16
2385 2412 4.191544 CCAAAGAACACAGAGACACAAGA 58.808 43.478 0.00 0.00 0.00 3.02
2386 2413 4.818546 CCAAAGAACACAGAGACACAAGAT 59.181 41.667 0.00 0.00 0.00 2.40
2387 2414 5.297776 CCAAAGAACACAGAGACACAAGATT 59.702 40.000 0.00 0.00 0.00 2.40
2388 2415 6.183360 CCAAAGAACACAGAGACACAAGATTT 60.183 38.462 0.00 0.00 0.00 2.17
2389 2416 7.012327 CCAAAGAACACAGAGACACAAGATTTA 59.988 37.037 0.00 0.00 0.00 1.40
2390 2417 8.562892 CAAAGAACACAGAGACACAAGATTTAT 58.437 33.333 0.00 0.00 0.00 1.40
2391 2418 9.778741 AAAGAACACAGAGACACAAGATTTATA 57.221 29.630 0.00 0.00 0.00 0.98
2392 2419 8.764524 AGAACACAGAGACACAAGATTTATAC 57.235 34.615 0.00 0.00 0.00 1.47
2393 2420 8.589338 AGAACACAGAGACACAAGATTTATACT 58.411 33.333 0.00 0.00 0.00 2.12
2394 2421 8.539770 AACACAGAGACACAAGATTTATACTG 57.460 34.615 0.00 0.00 0.00 2.74
2395 2422 7.099764 ACACAGAGACACAAGATTTATACTGG 58.900 38.462 0.00 0.00 0.00 4.00
2396 2423 7.099764 CACAGAGACACAAGATTTATACTGGT 58.900 38.462 0.00 0.00 0.00 4.00
2397 2424 7.604164 CACAGAGACACAAGATTTATACTGGTT 59.396 37.037 0.00 0.00 0.00 3.67
2398 2425 7.819900 ACAGAGACACAAGATTTATACTGGTTC 59.180 37.037 0.00 0.00 0.00 3.62
2399 2426 7.009631 CAGAGACACAAGATTTATACTGGTTCG 59.990 40.741 0.00 0.00 0.00 3.95
2400 2427 6.106673 AGACACAAGATTTATACTGGTTCGG 58.893 40.000 0.00 0.00 0.00 4.30
2401 2428 5.183228 ACACAAGATTTATACTGGTTCGGG 58.817 41.667 0.00 0.00 0.00 5.14
2402 2429 4.035208 CACAAGATTTATACTGGTTCGGGC 59.965 45.833 0.00 0.00 0.00 6.13
2403 2430 3.487120 AGATTTATACTGGTTCGGGCC 57.513 47.619 0.00 0.00 0.00 5.80
2404 2431 2.775384 AGATTTATACTGGTTCGGGCCA 59.225 45.455 4.39 0.00 36.97 5.36
2405 2432 2.406596 TTTATACTGGTTCGGGCCAC 57.593 50.000 4.39 0.00 34.36 5.01
2406 2433 1.575419 TTATACTGGTTCGGGCCACT 58.425 50.000 4.39 0.00 34.36 4.00
2407 2434 0.828022 TATACTGGTTCGGGCCACTG 59.172 55.000 4.39 0.00 34.36 3.66
2408 2435 0.907704 ATACTGGTTCGGGCCACTGA 60.908 55.000 4.39 0.00 34.36 3.41
2409 2436 0.907704 TACTGGTTCGGGCCACTGAT 60.908 55.000 4.39 0.00 34.36 2.90
2410 2437 1.746615 CTGGTTCGGGCCACTGATG 60.747 63.158 4.39 0.00 34.36 3.07
2411 2438 2.351276 GGTTCGGGCCACTGATGT 59.649 61.111 4.39 0.00 0.00 3.06
2412 2439 2.040544 GGTTCGGGCCACTGATGTG 61.041 63.158 4.39 0.00 43.45 3.21
2433 2460 4.667519 GGTGTAATACCCTACTCCAGTG 57.332 50.000 0.00 0.00 44.15 3.66
2434 2461 4.028825 GGTGTAATACCCTACTCCAGTGT 58.971 47.826 0.00 0.00 44.15 3.55
2435 2462 4.142004 GGTGTAATACCCTACTCCAGTGTG 60.142 50.000 0.00 0.00 44.15 3.82
2436 2463 4.465305 GTGTAATACCCTACTCCAGTGTGT 59.535 45.833 0.00 0.00 0.00 3.72
2437 2464 4.464951 TGTAATACCCTACTCCAGTGTGTG 59.535 45.833 0.00 0.00 0.00 3.82
2438 2465 2.688902 TACCCTACTCCAGTGTGTGT 57.311 50.000 0.00 0.00 0.00 3.72
2439 2466 1.048601 ACCCTACTCCAGTGTGTGTG 58.951 55.000 0.00 0.00 0.00 3.82
2440 2467 0.320771 CCCTACTCCAGTGTGTGTGC 60.321 60.000 0.00 0.00 0.00 4.57
2441 2468 0.681733 CCTACTCCAGTGTGTGTGCT 59.318 55.000 0.00 0.00 0.00 4.40
2442 2469 1.606480 CCTACTCCAGTGTGTGTGCTG 60.606 57.143 0.00 0.00 0.00 4.41
2448 2475 0.039798 CAGTGTGTGTGCTGGATTGC 60.040 55.000 0.00 0.00 0.00 3.56
2449 2476 1.174712 AGTGTGTGTGCTGGATTGCC 61.175 55.000 0.00 0.00 0.00 4.52
2450 2477 1.151221 TGTGTGTGCTGGATTGCCT 59.849 52.632 0.00 0.00 34.31 4.75
2451 2478 0.890542 TGTGTGTGCTGGATTGCCTC 60.891 55.000 0.00 0.00 34.31 4.70
2452 2479 0.607489 GTGTGTGCTGGATTGCCTCT 60.607 55.000 0.00 0.00 34.31 3.69
2453 2480 0.111061 TGTGTGCTGGATTGCCTCTT 59.889 50.000 0.00 0.00 34.31 2.85
2454 2481 0.524862 GTGTGCTGGATTGCCTCTTG 59.475 55.000 0.00 0.00 34.31 3.02
2455 2482 0.609957 TGTGCTGGATTGCCTCTTGG 60.610 55.000 0.00 0.00 34.31 3.61
2456 2483 1.000521 TGCTGGATTGCCTCTTGGG 60.001 57.895 0.00 0.00 38.36 4.12
2465 2492 2.599597 CCTCTTGGGCTGGGGATG 59.400 66.667 0.00 0.00 0.00 3.51
2466 2493 2.002977 CCTCTTGGGCTGGGGATGA 61.003 63.158 0.00 0.00 0.00 2.92
2467 2494 1.574526 CCTCTTGGGCTGGGGATGAA 61.575 60.000 0.00 0.00 0.00 2.57
2468 2495 0.394899 CTCTTGGGCTGGGGATGAAC 60.395 60.000 0.00 0.00 0.00 3.18
2469 2496 1.139498 TCTTGGGCTGGGGATGAACA 61.139 55.000 0.00 0.00 0.00 3.18
2470 2497 0.682209 CTTGGGCTGGGGATGAACAG 60.682 60.000 0.00 0.00 37.76 3.16
2471 2498 1.434513 TTGGGCTGGGGATGAACAGT 61.435 55.000 0.00 0.00 37.07 3.55
2472 2499 1.379044 GGGCTGGGGATGAACAGTG 60.379 63.158 0.00 0.00 37.07 3.66
2473 2500 2.048603 GGCTGGGGATGAACAGTGC 61.049 63.158 0.00 0.00 37.07 4.40
2474 2501 1.303561 GCTGGGGATGAACAGTGCA 60.304 57.895 0.00 0.00 37.07 4.57
2475 2502 0.895100 GCTGGGGATGAACAGTGCAA 60.895 55.000 0.00 0.00 37.07 4.08
2476 2503 1.171308 CTGGGGATGAACAGTGCAAG 58.829 55.000 0.00 0.00 0.00 4.01
2477 2504 0.251297 TGGGGATGAACAGTGCAAGG 60.251 55.000 0.00 0.00 0.00 3.61
2478 2505 0.967380 GGGGATGAACAGTGCAAGGG 60.967 60.000 0.00 0.00 0.00 3.95
2479 2506 0.967380 GGGATGAACAGTGCAAGGGG 60.967 60.000 0.00 0.00 0.00 4.79
2480 2507 0.038166 GGATGAACAGTGCAAGGGGA 59.962 55.000 0.00 0.00 0.00 4.81
2481 2508 1.547675 GGATGAACAGTGCAAGGGGAA 60.548 52.381 0.00 0.00 0.00 3.97
2482 2509 1.815003 GATGAACAGTGCAAGGGGAAG 59.185 52.381 0.00 0.00 0.00 3.46
2483 2510 0.843309 TGAACAGTGCAAGGGGAAGA 59.157 50.000 0.00 0.00 0.00 2.87
2484 2511 1.214175 TGAACAGTGCAAGGGGAAGAA 59.786 47.619 0.00 0.00 0.00 2.52
2485 2512 1.609072 GAACAGTGCAAGGGGAAGAAC 59.391 52.381 0.00 0.00 0.00 3.01
2486 2513 0.550914 ACAGTGCAAGGGGAAGAACA 59.449 50.000 0.00 0.00 0.00 3.18
2487 2514 1.242076 CAGTGCAAGGGGAAGAACAG 58.758 55.000 0.00 0.00 0.00 3.16
2488 2515 0.538287 AGTGCAAGGGGAAGAACAGC 60.538 55.000 0.00 0.00 0.00 4.40
2489 2516 1.228552 TGCAAGGGGAAGAACAGCC 60.229 57.895 0.00 0.00 0.00 4.85
2490 2517 1.075659 GCAAGGGGAAGAACAGCCT 59.924 57.895 0.00 0.00 0.00 4.58
2491 2518 0.962855 GCAAGGGGAAGAACAGCCTC 60.963 60.000 0.00 0.00 0.00 4.70
2492 2519 0.322906 CAAGGGGAAGAACAGCCTCC 60.323 60.000 0.00 0.00 0.00 4.30
2493 2520 0.476611 AAGGGGAAGAACAGCCTCCT 60.477 55.000 0.00 0.00 0.00 3.69
2494 2521 1.204113 AGGGGAAGAACAGCCTCCTG 61.204 60.000 0.00 0.00 44.80 3.86
2495 2522 1.201429 GGGGAAGAACAGCCTCCTGA 61.201 60.000 0.00 0.00 41.77 3.86
2496 2523 0.251634 GGGAAGAACAGCCTCCTGAG 59.748 60.000 0.00 0.00 41.77 3.35
2505 2532 2.681778 CCTCCTGAGGCGAGGTGT 60.682 66.667 0.00 0.00 42.44 4.16
2506 2533 2.286523 CCTCCTGAGGCGAGGTGTT 61.287 63.158 0.00 0.00 42.44 3.32
2507 2534 1.216710 CTCCTGAGGCGAGGTGTTC 59.783 63.158 0.00 0.00 34.36 3.18
2508 2535 1.228894 TCCTGAGGCGAGGTGTTCT 60.229 57.895 0.00 0.00 34.36 3.01
2509 2536 0.832135 TCCTGAGGCGAGGTGTTCTT 60.832 55.000 0.00 0.00 34.36 2.52
2510 2537 0.671781 CCTGAGGCGAGGTGTTCTTG 60.672 60.000 0.00 0.00 0.00 3.02
2511 2538 0.034059 CTGAGGCGAGGTGTTCTTGT 59.966 55.000 0.00 0.00 0.00 3.16
2512 2539 0.249868 TGAGGCGAGGTGTTCTTGTG 60.250 55.000 0.00 0.00 0.00 3.33
2513 2540 1.569479 GAGGCGAGGTGTTCTTGTGC 61.569 60.000 0.00 0.00 0.00 4.57
2514 2541 1.598130 GGCGAGGTGTTCTTGTGCT 60.598 57.895 0.00 0.00 0.00 4.40
2515 2542 1.569479 GGCGAGGTGTTCTTGTGCTC 61.569 60.000 0.00 0.00 0.00 4.26
2516 2543 1.569479 GCGAGGTGTTCTTGTGCTCC 61.569 60.000 0.00 0.00 0.00 4.70
2517 2544 0.034059 CGAGGTGTTCTTGTGCTCCT 59.966 55.000 0.00 0.00 0.00 3.69
2518 2545 1.517242 GAGGTGTTCTTGTGCTCCTG 58.483 55.000 0.00 0.00 0.00 3.86
2519 2546 1.070758 GAGGTGTTCTTGTGCTCCTGA 59.929 52.381 0.00 0.00 0.00 3.86
2520 2547 1.071385 AGGTGTTCTTGTGCTCCTGAG 59.929 52.381 0.00 0.00 0.00 3.35
2531 2558 2.364317 TCCTGAGCCGGAGAAGGG 60.364 66.667 5.05 0.00 0.00 3.95
2532 2559 2.685380 CCTGAGCCGGAGAAGGGT 60.685 66.667 5.05 0.00 45.90 4.34
2533 2560 2.294078 CCTGAGCCGGAGAAGGGTT 61.294 63.158 5.05 0.00 42.85 4.11
2534 2561 1.219393 CTGAGCCGGAGAAGGGTTC 59.781 63.158 5.05 0.00 42.85 3.62
2535 2562 2.245438 CTGAGCCGGAGAAGGGTTCC 62.245 65.000 5.05 0.00 42.85 3.62
2541 2568 2.063774 GGAGAAGGGTTCCGTTCCA 58.936 57.895 17.14 0.00 33.04 3.53
2542 2569 0.036294 GGAGAAGGGTTCCGTTCCAG 60.036 60.000 17.14 0.00 33.04 3.86
2543 2570 0.974383 GAGAAGGGTTCCGTTCCAGA 59.026 55.000 17.14 0.00 33.04 3.86
2544 2571 0.685660 AGAAGGGTTCCGTTCCAGAC 59.314 55.000 17.14 0.00 33.04 3.51
2545 2572 0.685660 GAAGGGTTCCGTTCCAGACT 59.314 55.000 11.74 0.00 0.00 3.24
2546 2573 1.897802 GAAGGGTTCCGTTCCAGACTA 59.102 52.381 11.74 0.00 0.00 2.59
2547 2574 1.558233 AGGGTTCCGTTCCAGACTAG 58.442 55.000 0.00 0.00 0.00 2.57
2548 2575 1.203149 AGGGTTCCGTTCCAGACTAGT 60.203 52.381 0.00 0.00 0.00 2.57
2549 2576 1.622312 GGGTTCCGTTCCAGACTAGTT 59.378 52.381 0.00 0.00 0.00 2.24
2550 2577 2.612221 GGGTTCCGTTCCAGACTAGTTG 60.612 54.545 0.00 0.00 0.00 3.16
2551 2578 2.067013 GTTCCGTTCCAGACTAGTTGC 58.933 52.381 0.00 0.00 0.00 4.17
2552 2579 0.606604 TCCGTTCCAGACTAGTTGCC 59.393 55.000 0.00 0.00 0.00 4.52
2553 2580 0.608640 CCGTTCCAGACTAGTTGCCT 59.391 55.000 0.00 0.00 0.00 4.75
2554 2581 1.404315 CCGTTCCAGACTAGTTGCCTC 60.404 57.143 0.00 0.00 0.00 4.70
2555 2582 1.404315 CGTTCCAGACTAGTTGCCTCC 60.404 57.143 0.00 0.00 0.00 4.30
2556 2583 1.903183 GTTCCAGACTAGTTGCCTCCT 59.097 52.381 0.00 0.00 0.00 3.69
2557 2584 3.097614 GTTCCAGACTAGTTGCCTCCTA 58.902 50.000 0.00 0.00 0.00 2.94
2558 2585 2.736347 TCCAGACTAGTTGCCTCCTAC 58.264 52.381 0.00 0.00 0.00 3.18
2559 2586 2.312140 TCCAGACTAGTTGCCTCCTACT 59.688 50.000 0.00 0.00 0.00 2.57
2560 2587 2.428890 CCAGACTAGTTGCCTCCTACTG 59.571 54.545 0.00 0.00 0.00 2.74
2561 2588 3.093057 CAGACTAGTTGCCTCCTACTGT 58.907 50.000 0.00 0.00 0.00 3.55
2562 2589 3.093057 AGACTAGTTGCCTCCTACTGTG 58.907 50.000 0.00 0.00 0.00 3.66
2563 2590 2.166664 GACTAGTTGCCTCCTACTGTGG 59.833 54.545 0.00 0.00 0.00 4.17
2564 2591 2.180276 CTAGTTGCCTCCTACTGTGGT 58.820 52.381 0.00 0.00 0.00 4.16
2565 2592 0.687354 AGTTGCCTCCTACTGTGGTG 59.313 55.000 0.00 0.00 0.00 4.17
2566 2593 0.321653 GTTGCCTCCTACTGTGGTGG 60.322 60.000 10.89 10.89 42.10 4.61
2568 2595 4.136978 CCTCCTACTGTGGTGGCT 57.863 61.111 0.00 0.00 34.50 4.75
2569 2596 3.300032 CCTCCTACTGTGGTGGCTA 57.700 57.895 0.00 0.00 34.50 3.93
2570 2597 1.115467 CCTCCTACTGTGGTGGCTAG 58.885 60.000 0.00 0.00 34.50 3.42
2571 2598 1.619977 CCTCCTACTGTGGTGGCTAGT 60.620 57.143 0.00 0.00 34.50 2.57
2572 2599 1.751924 CTCCTACTGTGGTGGCTAGTC 59.248 57.143 0.00 0.00 0.00 2.59
2573 2600 0.824759 CCTACTGTGGTGGCTAGTCC 59.175 60.000 0.00 0.00 0.00 3.85
2574 2601 1.619977 CCTACTGTGGTGGCTAGTCCT 60.620 57.143 0.00 0.00 35.26 3.85
2575 2602 2.357881 CCTACTGTGGTGGCTAGTCCTA 60.358 54.545 0.00 0.00 35.26 2.94
2576 2603 2.552093 ACTGTGGTGGCTAGTCCTAT 57.448 50.000 0.00 0.00 35.26 2.57
2577 2604 2.834113 ACTGTGGTGGCTAGTCCTATT 58.166 47.619 0.00 0.00 35.26 1.73
2578 2605 3.182152 ACTGTGGTGGCTAGTCCTATTT 58.818 45.455 0.00 0.00 35.26 1.40
2579 2606 4.359105 ACTGTGGTGGCTAGTCCTATTTA 58.641 43.478 0.00 0.00 35.26 1.40
2580 2607 4.969359 ACTGTGGTGGCTAGTCCTATTTAT 59.031 41.667 0.00 0.00 35.26 1.40
2581 2608 6.141083 ACTGTGGTGGCTAGTCCTATTTATA 58.859 40.000 0.00 0.00 35.26 0.98
2582 2609 6.267928 ACTGTGGTGGCTAGTCCTATTTATAG 59.732 42.308 0.00 0.00 35.26 1.31
2591 2618 0.916809 CCTATTTATAGGGGCCCGGG 59.083 60.000 19.09 19.09 44.97 5.73
2592 2619 1.665137 CTATTTATAGGGGCCCGGGT 58.335 55.000 24.63 9.87 0.00 5.28
2593 2620 1.558294 CTATTTATAGGGGCCCGGGTC 59.442 57.143 24.63 22.35 0.00 4.46
2594 2621 1.138228 ATTTATAGGGGCCCGGGTCC 61.138 60.000 37.68 37.68 39.62 4.46
2595 2622 2.274306 TTTATAGGGGCCCGGGTCCT 62.274 60.000 41.98 35.55 40.34 3.85
2596 2623 2.684586 TTATAGGGGCCCGGGTCCTC 62.685 65.000 41.98 31.55 40.34 3.71
2603 2630 2.609610 CCCGGGTCCTCTTCCCAA 60.610 66.667 14.18 0.00 44.81 4.12
2604 2631 2.228480 CCCGGGTCCTCTTCCCAAA 61.228 63.158 14.18 0.00 44.81 3.28
2605 2632 1.571773 CCCGGGTCCTCTTCCCAAAT 61.572 60.000 14.18 0.00 44.81 2.32
2606 2633 1.209621 CCGGGTCCTCTTCCCAAATA 58.790 55.000 0.00 0.00 44.81 1.40
2607 2634 1.774856 CCGGGTCCTCTTCCCAAATAT 59.225 52.381 0.00 0.00 44.81 1.28
2608 2635 2.224548 CCGGGTCCTCTTCCCAAATATC 60.225 54.545 0.00 0.00 44.81 1.63
2609 2636 2.548067 CGGGTCCTCTTCCCAAATATCG 60.548 54.545 1.91 0.00 44.81 2.92
2610 2637 2.704065 GGGTCCTCTTCCCAAATATCGA 59.296 50.000 0.00 0.00 44.05 3.59
2611 2638 3.244249 GGGTCCTCTTCCCAAATATCGAG 60.244 52.174 0.00 0.00 44.05 4.04
2612 2639 3.394719 GTCCTCTTCCCAAATATCGAGC 58.605 50.000 0.00 0.00 0.00 5.03
2613 2640 2.035961 TCCTCTTCCCAAATATCGAGCG 59.964 50.000 0.00 0.00 0.00 5.03
2614 2641 2.408050 CTCTTCCCAAATATCGAGCGG 58.592 52.381 0.00 0.00 0.00 5.52
2615 2642 1.070134 TCTTCCCAAATATCGAGCGGG 59.930 52.381 0.00 0.00 38.34 6.13
2616 2643 1.070134 CTTCCCAAATATCGAGCGGGA 59.930 52.381 6.11 6.11 44.30 5.14
2617 2644 1.124780 TCCCAAATATCGAGCGGGAA 58.875 50.000 7.43 0.00 43.02 3.97
2618 2645 1.070134 TCCCAAATATCGAGCGGGAAG 59.930 52.381 7.43 0.00 43.02 3.46
2619 2646 1.512926 CCAAATATCGAGCGGGAAGG 58.487 55.000 0.00 0.00 0.00 3.46
2620 2647 1.512926 CAAATATCGAGCGGGAAGGG 58.487 55.000 0.00 0.00 0.00 3.95
2621 2648 1.070134 CAAATATCGAGCGGGAAGGGA 59.930 52.381 0.00 0.00 0.00 4.20
2622 2649 1.645710 AATATCGAGCGGGAAGGGAT 58.354 50.000 0.00 0.00 0.00 3.85
2623 2650 1.187087 ATATCGAGCGGGAAGGGATC 58.813 55.000 0.00 0.00 0.00 3.36
2631 2658 4.637771 GGAAGGGATCCCACAACG 57.362 61.111 32.69 0.00 43.00 4.10
2632 2659 1.077716 GGAAGGGATCCCACAACGG 60.078 63.158 32.69 0.00 43.00 4.44
2633 2660 1.749258 GAAGGGATCCCACAACGGC 60.749 63.158 32.69 9.37 38.92 5.68
2634 2661 3.282374 AAGGGATCCCACAACGGCC 62.282 63.158 32.69 1.84 38.92 6.13
2635 2662 4.041762 GGGATCCCACAACGGCCA 62.042 66.667 26.95 0.00 35.81 5.36
2636 2663 2.034999 GGATCCCACAACGGCCAA 59.965 61.111 2.24 0.00 0.00 4.52
2637 2664 1.379843 GGATCCCACAACGGCCAAT 60.380 57.895 2.24 0.00 0.00 3.16
2638 2665 0.970427 GGATCCCACAACGGCCAATT 60.970 55.000 2.24 0.00 0.00 2.32
2639 2666 0.894835 GATCCCACAACGGCCAATTT 59.105 50.000 2.24 0.00 0.00 1.82
2640 2667 1.275010 GATCCCACAACGGCCAATTTT 59.725 47.619 2.24 0.00 0.00 1.82
2641 2668 0.390860 TCCCACAACGGCCAATTTTG 59.609 50.000 2.24 2.48 0.00 2.44
2642 2669 0.390860 CCCACAACGGCCAATTTTGA 59.609 50.000 2.24 0.00 0.00 2.69
2643 2670 1.202580 CCCACAACGGCCAATTTTGAA 60.203 47.619 2.24 0.00 0.00 2.69
2644 2671 2.134346 CCACAACGGCCAATTTTGAAG 58.866 47.619 2.24 0.00 0.00 3.02
2645 2672 2.134346 CACAACGGCCAATTTTGAAGG 58.866 47.619 2.24 0.00 0.00 3.46
2646 2673 1.069978 ACAACGGCCAATTTTGAAGGG 59.930 47.619 2.24 0.00 0.00 3.95
2647 2674 0.684535 AACGGCCAATTTTGAAGGGG 59.315 50.000 2.24 0.00 0.00 4.79
2648 2675 0.178947 ACGGCCAATTTTGAAGGGGA 60.179 50.000 2.24 0.00 0.00 4.81
2649 2676 0.972883 CGGCCAATTTTGAAGGGGAA 59.027 50.000 2.24 0.00 0.00 3.97
2650 2677 1.337728 CGGCCAATTTTGAAGGGGAAC 60.338 52.381 2.24 0.00 0.00 3.62
2651 2678 1.696884 GGCCAATTTTGAAGGGGAACA 59.303 47.619 0.00 0.00 0.00 3.18
2652 2679 2.105649 GGCCAATTTTGAAGGGGAACAA 59.894 45.455 0.00 0.00 0.00 2.83
2653 2680 3.138304 GCCAATTTTGAAGGGGAACAAC 58.862 45.455 0.00 0.00 0.00 3.32
2654 2681 3.181455 GCCAATTTTGAAGGGGAACAACT 60.181 43.478 0.00 0.00 0.00 3.16
2655 2682 4.039852 GCCAATTTTGAAGGGGAACAACTA 59.960 41.667 0.00 0.00 0.00 2.24
2656 2683 5.783111 CCAATTTTGAAGGGGAACAACTAG 58.217 41.667 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
180 191 0.962356 CTTTGGCAGGCGAAGACCAT 60.962 55.000 17.58 0.00 31.70 3.55
322 341 4.137543 ACTTGTTTCCTCTTTGGTGCTAG 58.862 43.478 0.00 0.00 37.07 3.42
371 390 0.994247 TGAGCCATGATGACCAAGGT 59.006 50.000 0.00 0.00 36.08 3.50
440 459 2.610546 TCCCTAGGCTGGCTTGCA 60.611 61.111 9.68 0.00 34.04 4.08
528 547 1.578215 ATGGCCCATCTTCACCAGCT 61.578 55.000 0.00 0.00 35.20 4.24
618 637 4.096382 CCACAACCTATATGAACCTGTTGC 59.904 45.833 0.00 0.00 37.25 4.17
637 656 6.693466 TGATTATAAGTTCTCGTTGACCACA 58.307 36.000 0.00 0.00 0.00 4.17
661 680 4.351111 AGTTATTCCAGTTTGTCTGTCCCT 59.649 41.667 0.00 0.00 42.19 4.20
680 699 8.957466 ACATAGTATCGATAGCTATTGCAGTTA 58.043 33.333 15.27 6.77 42.74 2.24
705 724 8.810652 TTGAGTTCATTTGCTTTTGGTATAAC 57.189 30.769 0.00 0.00 0.00 1.89
709 728 5.221422 CCCTTGAGTTCATTTGCTTTTGGTA 60.221 40.000 0.00 0.00 0.00 3.25
735 754 8.509690 CAATACAATGTCTCACTCTCATTTGTT 58.490 33.333 0.00 0.00 30.74 2.83
782 801 0.874390 TGCCACAGTCGAGCATTTTC 59.126 50.000 0.00 0.00 0.00 2.29
865 884 0.032615 AGAGGAGCAGGATCCGAAGT 60.033 55.000 5.98 0.00 44.65 3.01
1038 1057 7.898636 TGTAAATAGAAAACATCCCCTTGGAAT 59.101 33.333 0.00 0.00 45.98 3.01
1043 1062 7.344612 GGGAATGTAAATAGAAAACATCCCCTT 59.655 37.037 2.07 0.00 43.04 3.95
1077 1096 1.255600 GATCGTTTAGCGGCTCTTTCG 59.744 52.381 5.39 8.04 41.72 3.46
1177 1196 4.454678 TCTGTAATGGAGATCACATTGGC 58.545 43.478 19.83 14.46 38.84 4.52
1236 1255 7.502226 CCAATGTTAATAGCTGGTCTAATTCCA 59.498 37.037 0.00 0.00 0.00 3.53
1258 1277 3.005897 ACGCGACTGATAGATAAGCCAAT 59.994 43.478 15.93 0.00 0.00 3.16
1269 1288 0.733150 CAGACCAGACGCGACTGATA 59.267 55.000 34.27 0.00 39.94 2.15
1270 1289 1.508545 CAGACCAGACGCGACTGAT 59.491 57.895 34.27 22.64 39.94 2.90
1369 1388 3.138283 TCAAGGTCTGACCCAAATTGAGT 59.862 43.478 22.81 0.00 39.75 3.41
1408 1427 3.052490 AGCCTTGGACCTCTACTGAGTAT 60.052 47.826 0.00 0.00 38.61 2.12
1415 1434 3.097614 TCTGTAAGCCTTGGACCTCTAC 58.902 50.000 0.00 0.00 0.00 2.59
1423 1442 1.168714 GGCACTTCTGTAAGCCTTGG 58.831 55.000 0.00 0.00 43.70 3.61
1510 1529 1.065926 TGGCATTCGATCACAGAAGCT 60.066 47.619 0.00 0.00 0.00 3.74
1537 1556 8.638685 ATGGCTTTTTCATATTGAGAAATTCG 57.361 30.769 0.00 0.00 35.17 3.34
1670 1692 7.539034 AAAGTAACCAGTGGAAAAGCATAAT 57.461 32.000 18.40 0.00 0.00 1.28
1784 1811 9.586150 CGATCAAAAATAATTAGACATTCGAGG 57.414 33.333 0.00 0.00 0.00 4.63
1883 1910 3.361977 GGTTGCGCGGATGTGGTT 61.362 61.111 8.83 0.00 0.00 3.67
2119 2146 3.064207 CAAGCAAGTAGGTAACGCAGAA 58.936 45.455 0.00 0.00 46.39 3.02
2248 2275 2.975536 GGAACCCGTGATCCGACA 59.024 61.111 5.32 0.00 39.56 4.35
2252 2279 3.615509 TTGCCGGAACCCGTGATCC 62.616 63.158 5.05 0.00 46.80 3.36
2253 2280 1.238625 TTTTGCCGGAACCCGTGATC 61.239 55.000 5.05 0.00 46.80 2.92
2254 2281 1.228306 TTTTGCCGGAACCCGTGAT 60.228 52.632 5.05 0.00 46.80 3.06
2255 2282 2.188161 GTTTTGCCGGAACCCGTGA 61.188 57.895 5.05 0.00 46.80 4.35
2256 2283 2.333581 GTTTTGCCGGAACCCGTG 59.666 61.111 5.05 0.00 46.80 4.94
2257 2284 2.908428 GGTTTTGCCGGAACCCGT 60.908 61.111 5.05 0.00 46.80 5.28
2260 2287 1.110518 TTGAGGGTTTTGCCGGAACC 61.111 55.000 13.86 13.86 44.62 3.62
2261 2288 0.313987 CTTGAGGGTTTTGCCGGAAC 59.686 55.000 5.05 0.00 38.44 3.62
2262 2289 0.825840 CCTTGAGGGTTTTGCCGGAA 60.826 55.000 5.05 0.00 38.44 4.30
2263 2290 1.228429 CCTTGAGGGTTTTGCCGGA 60.228 57.895 5.05 0.00 38.44 5.14
2264 2291 3.365535 CCTTGAGGGTTTTGCCGG 58.634 61.111 0.00 0.00 38.44 6.13
2273 2300 1.512926 CAGTGTTCGAACCTTGAGGG 58.487 55.000 24.78 6.32 40.27 4.30
2274 2301 1.512926 CCAGTGTTCGAACCTTGAGG 58.487 55.000 24.78 15.11 42.17 3.86
2275 2302 1.512926 CCCAGTGTTCGAACCTTGAG 58.487 55.000 24.78 10.52 0.00 3.02
2276 2303 0.107831 CCCCAGTGTTCGAACCTTGA 59.892 55.000 24.78 3.77 0.00 3.02
2277 2304 0.179029 ACCCCAGTGTTCGAACCTTG 60.179 55.000 24.78 20.59 0.00 3.61
2278 2305 0.179029 CACCCCAGTGTTCGAACCTT 60.179 55.000 24.78 10.58 39.30 3.50
2279 2306 1.450211 CACCCCAGTGTTCGAACCT 59.550 57.895 24.78 17.73 39.30 3.50
2280 2307 2.258726 GCACCCCAGTGTTCGAACC 61.259 63.158 24.78 15.84 46.35 3.62
2281 2308 2.604174 CGCACCCCAGTGTTCGAAC 61.604 63.158 21.42 21.42 46.35 3.95
2282 2309 2.280524 CGCACCCCAGTGTTCGAA 60.281 61.111 0.00 0.00 46.35 3.71
2283 2310 4.980805 GCGCACCCCAGTGTTCGA 62.981 66.667 0.30 0.00 46.35 3.71
2285 2312 3.660111 GTGCGCACCCCAGTGTTC 61.660 66.667 30.12 0.00 46.35 3.18
2289 2316 4.988598 CTTCGTGCGCACCCCAGT 62.989 66.667 33.23 0.00 0.00 4.00
2290 2317 3.958147 ATCTTCGTGCGCACCCCAG 62.958 63.158 33.23 24.67 0.00 4.45
2291 2318 3.950794 GATCTTCGTGCGCACCCCA 62.951 63.158 33.23 15.79 0.00 4.96
2292 2319 3.195698 GATCTTCGTGCGCACCCC 61.196 66.667 33.23 10.90 0.00 4.95
2293 2320 2.125512 AGATCTTCGTGCGCACCC 60.126 61.111 33.23 11.71 0.00 4.61
2294 2321 1.142778 GAGAGATCTTCGTGCGCACC 61.143 60.000 33.23 18.62 0.00 5.01
2295 2322 1.142778 GGAGAGATCTTCGTGCGCAC 61.143 60.000 30.42 30.42 0.00 5.34
2296 2323 1.139734 GGAGAGATCTTCGTGCGCA 59.860 57.895 5.66 5.66 0.00 6.09
2297 2324 0.593773 GAGGAGAGATCTTCGTGCGC 60.594 60.000 0.00 0.00 0.00 6.09
2298 2325 1.002900 GAGAGGAGAGATCTTCGTGCG 60.003 57.143 0.00 0.00 0.00 5.34
2299 2326 1.336755 GGAGAGGAGAGATCTTCGTGC 59.663 57.143 0.00 0.00 0.00 5.34
2300 2327 1.953686 GGGAGAGGAGAGATCTTCGTG 59.046 57.143 0.00 0.00 0.00 4.35
2301 2328 1.566703 TGGGAGAGGAGAGATCTTCGT 59.433 52.381 0.00 0.00 0.00 3.85
2302 2329 2.356665 TGGGAGAGGAGAGATCTTCG 57.643 55.000 0.00 0.00 0.00 3.79
2303 2330 2.365293 GCTTGGGAGAGGAGAGATCTTC 59.635 54.545 0.00 0.00 0.00 2.87
2304 2331 2.023113 AGCTTGGGAGAGGAGAGATCTT 60.023 50.000 0.00 0.00 0.00 2.40
2305 2332 1.575304 AGCTTGGGAGAGGAGAGATCT 59.425 52.381 0.00 0.00 0.00 2.75
2306 2333 1.963515 GAGCTTGGGAGAGGAGAGATC 59.036 57.143 0.00 0.00 0.00 2.75
2307 2334 1.575304 AGAGCTTGGGAGAGGAGAGAT 59.425 52.381 0.00 0.00 0.00 2.75
2308 2335 1.006813 AGAGCTTGGGAGAGGAGAGA 58.993 55.000 0.00 0.00 0.00 3.10
2309 2336 1.402787 GAGAGCTTGGGAGAGGAGAG 58.597 60.000 0.00 0.00 0.00 3.20
2310 2337 0.395036 CGAGAGCTTGGGAGAGGAGA 60.395 60.000 0.00 0.00 0.00 3.71
2311 2338 2.114638 CGAGAGCTTGGGAGAGGAG 58.885 63.158 0.00 0.00 0.00 3.69
2312 2339 4.346049 CGAGAGCTTGGGAGAGGA 57.654 61.111 0.00 0.00 0.00 3.71
2324 2351 1.262950 CTAGATCGTGGAGTGCGAGAG 59.737 57.143 0.00 0.00 41.83 3.20
2325 2352 1.300481 CTAGATCGTGGAGTGCGAGA 58.700 55.000 0.00 0.00 41.83 4.04
2326 2353 0.317436 GCTAGATCGTGGAGTGCGAG 60.317 60.000 0.00 0.00 41.83 5.03
2327 2354 1.029947 TGCTAGATCGTGGAGTGCGA 61.030 55.000 0.00 0.00 42.75 5.10
2328 2355 0.593518 CTGCTAGATCGTGGAGTGCG 60.594 60.000 0.00 0.00 0.00 5.34
2329 2356 0.741326 TCTGCTAGATCGTGGAGTGC 59.259 55.000 0.00 0.00 0.00 4.40
2330 2357 2.020720 AGTCTGCTAGATCGTGGAGTG 58.979 52.381 0.00 0.00 0.00 3.51
2331 2358 2.428544 AGTCTGCTAGATCGTGGAGT 57.571 50.000 0.00 0.00 0.00 3.85
2332 2359 3.880490 AGTTAGTCTGCTAGATCGTGGAG 59.120 47.826 0.00 3.81 0.00 3.86
2333 2360 3.878103 GAGTTAGTCTGCTAGATCGTGGA 59.122 47.826 0.00 0.00 0.00 4.02
2334 2361 3.303461 CGAGTTAGTCTGCTAGATCGTGG 60.303 52.174 0.00 0.00 34.81 4.94
2335 2362 3.846744 GCGAGTTAGTCTGCTAGATCGTG 60.847 52.174 0.00 0.00 38.31 4.35
2336 2363 2.288458 GCGAGTTAGTCTGCTAGATCGT 59.712 50.000 0.00 0.00 38.31 3.73
2337 2364 2.350007 GGCGAGTTAGTCTGCTAGATCG 60.350 54.545 0.00 0.00 38.69 3.69
2338 2365 2.350007 CGGCGAGTTAGTCTGCTAGATC 60.350 54.545 0.00 0.00 0.00 2.75
2339 2366 1.604755 CGGCGAGTTAGTCTGCTAGAT 59.395 52.381 0.00 0.00 0.00 1.98
2340 2367 1.015109 CGGCGAGTTAGTCTGCTAGA 58.985 55.000 0.00 0.00 0.00 2.43
2341 2368 1.015109 TCGGCGAGTTAGTCTGCTAG 58.985 55.000 4.99 0.00 0.00 3.42
2342 2369 1.131883 GTTCGGCGAGTTAGTCTGCTA 59.868 52.381 10.46 0.00 0.00 3.49
2343 2370 0.109226 GTTCGGCGAGTTAGTCTGCT 60.109 55.000 10.46 0.00 0.00 4.24
2344 2371 1.077089 GGTTCGGCGAGTTAGTCTGC 61.077 60.000 10.46 0.00 0.00 4.26
2345 2372 0.458025 GGGTTCGGCGAGTTAGTCTG 60.458 60.000 10.46 0.00 0.00 3.51
2346 2373 0.896940 TGGGTTCGGCGAGTTAGTCT 60.897 55.000 10.46 0.00 0.00 3.24
2347 2374 0.037975 TTGGGTTCGGCGAGTTAGTC 60.038 55.000 10.46 0.00 0.00 2.59
2348 2375 0.393820 TTTGGGTTCGGCGAGTTAGT 59.606 50.000 10.46 0.00 0.00 2.24
2349 2376 1.076332 CTTTGGGTTCGGCGAGTTAG 58.924 55.000 10.46 0.00 0.00 2.34
2350 2377 0.680618 TCTTTGGGTTCGGCGAGTTA 59.319 50.000 10.46 0.00 0.00 2.24
2351 2378 0.179040 TTCTTTGGGTTCGGCGAGTT 60.179 50.000 10.46 0.00 0.00 3.01
2352 2379 0.883370 GTTCTTTGGGTTCGGCGAGT 60.883 55.000 10.46 0.00 0.00 4.18
2353 2380 0.882927 TGTTCTTTGGGTTCGGCGAG 60.883 55.000 10.46 0.00 0.00 5.03
2354 2381 1.146485 TGTTCTTTGGGTTCGGCGA 59.854 52.632 4.99 4.99 0.00 5.54
2355 2382 1.281656 GTGTTCTTTGGGTTCGGCG 59.718 57.895 0.00 0.00 0.00 6.46
2356 2383 0.310854 CTGTGTTCTTTGGGTTCGGC 59.689 55.000 0.00 0.00 0.00 5.54
2357 2384 1.873591 CTCTGTGTTCTTTGGGTTCGG 59.126 52.381 0.00 0.00 0.00 4.30
2358 2385 2.544267 GTCTCTGTGTTCTTTGGGTTCG 59.456 50.000 0.00 0.00 0.00 3.95
2359 2386 3.312697 GTGTCTCTGTGTTCTTTGGGTTC 59.687 47.826 0.00 0.00 0.00 3.62
2360 2387 3.279434 GTGTCTCTGTGTTCTTTGGGTT 58.721 45.455 0.00 0.00 0.00 4.11
2361 2388 2.238646 TGTGTCTCTGTGTTCTTTGGGT 59.761 45.455 0.00 0.00 0.00 4.51
2362 2389 2.917933 TGTGTCTCTGTGTTCTTTGGG 58.082 47.619 0.00 0.00 0.00 4.12
2363 2390 4.191544 TCTTGTGTCTCTGTGTTCTTTGG 58.808 43.478 0.00 0.00 0.00 3.28
2364 2391 5.998454 ATCTTGTGTCTCTGTGTTCTTTG 57.002 39.130 0.00 0.00 0.00 2.77
2365 2392 8.682936 ATAAATCTTGTGTCTCTGTGTTCTTT 57.317 30.769 0.00 0.00 0.00 2.52
2366 2393 9.209175 GTATAAATCTTGTGTCTCTGTGTTCTT 57.791 33.333 0.00 0.00 0.00 2.52
2367 2394 8.589338 AGTATAAATCTTGTGTCTCTGTGTTCT 58.411 33.333 0.00 0.00 0.00 3.01
2368 2395 8.651588 CAGTATAAATCTTGTGTCTCTGTGTTC 58.348 37.037 0.00 0.00 0.00 3.18
2369 2396 7.604164 CCAGTATAAATCTTGTGTCTCTGTGTT 59.396 37.037 0.00 0.00 0.00 3.32
2370 2397 7.099764 CCAGTATAAATCTTGTGTCTCTGTGT 58.900 38.462 0.00 0.00 0.00 3.72
2371 2398 7.099764 ACCAGTATAAATCTTGTGTCTCTGTG 58.900 38.462 0.00 0.00 0.00 3.66
2372 2399 7.246171 ACCAGTATAAATCTTGTGTCTCTGT 57.754 36.000 0.00 0.00 0.00 3.41
2373 2400 7.009631 CGAACCAGTATAAATCTTGTGTCTCTG 59.990 40.741 0.00 0.00 0.00 3.35
2374 2401 7.036220 CGAACCAGTATAAATCTTGTGTCTCT 58.964 38.462 0.00 0.00 0.00 3.10
2375 2402 6.255887 CCGAACCAGTATAAATCTTGTGTCTC 59.744 42.308 0.00 0.00 0.00 3.36
2376 2403 6.106673 CCGAACCAGTATAAATCTTGTGTCT 58.893 40.000 0.00 0.00 0.00 3.41
2377 2404 5.293569 CCCGAACCAGTATAAATCTTGTGTC 59.706 44.000 0.00 0.00 0.00 3.67
2378 2405 5.183228 CCCGAACCAGTATAAATCTTGTGT 58.817 41.667 0.00 0.00 0.00 3.72
2379 2406 4.035208 GCCCGAACCAGTATAAATCTTGTG 59.965 45.833 0.00 0.00 0.00 3.33
2380 2407 4.196971 GCCCGAACCAGTATAAATCTTGT 58.803 43.478 0.00 0.00 0.00 3.16
2381 2408 3.564225 GGCCCGAACCAGTATAAATCTTG 59.436 47.826 0.00 0.00 0.00 3.02
2382 2409 3.201266 TGGCCCGAACCAGTATAAATCTT 59.799 43.478 0.00 0.00 33.75 2.40
2383 2410 2.775384 TGGCCCGAACCAGTATAAATCT 59.225 45.455 0.00 0.00 33.75 2.40
2384 2411 2.876550 GTGGCCCGAACCAGTATAAATC 59.123 50.000 0.00 0.00 41.46 2.17
2385 2412 2.508300 AGTGGCCCGAACCAGTATAAAT 59.492 45.455 0.00 0.00 41.74 1.40
2386 2413 1.910671 AGTGGCCCGAACCAGTATAAA 59.089 47.619 0.00 0.00 41.74 1.40
2387 2414 1.208535 CAGTGGCCCGAACCAGTATAA 59.791 52.381 0.00 0.00 41.62 0.98
2388 2415 0.828022 CAGTGGCCCGAACCAGTATA 59.172 55.000 0.00 0.00 41.62 1.47
2389 2416 0.907704 TCAGTGGCCCGAACCAGTAT 60.908 55.000 0.00 0.00 41.62 2.12
2390 2417 0.907704 ATCAGTGGCCCGAACCAGTA 60.908 55.000 0.00 0.00 41.62 2.74
2391 2418 2.224159 ATCAGTGGCCCGAACCAGT 61.224 57.895 0.00 0.00 44.50 4.00
2392 2419 1.746615 CATCAGTGGCCCGAACCAG 60.747 63.158 0.00 0.00 41.46 4.00
2393 2420 2.350895 CATCAGTGGCCCGAACCA 59.649 61.111 0.00 0.00 37.38 3.67
2394 2421 2.040544 CACATCAGTGGCCCGAACC 61.041 63.158 0.00 0.00 42.13 3.62
2395 2422 3.578456 CACATCAGTGGCCCGAAC 58.422 61.111 0.00 0.00 42.13 3.95
2412 2439 4.028825 ACACTGGAGTAGGGTATTACACC 58.971 47.826 0.00 0.00 42.62 4.16
2413 2440 4.465305 ACACACTGGAGTAGGGTATTACAC 59.535 45.833 0.00 0.00 42.52 2.90
2414 2441 4.464951 CACACACTGGAGTAGGGTATTACA 59.535 45.833 0.00 0.00 42.52 2.41
2415 2442 4.465305 ACACACACTGGAGTAGGGTATTAC 59.535 45.833 0.00 0.00 42.52 1.89
2416 2443 4.464951 CACACACACTGGAGTAGGGTATTA 59.535 45.833 0.00 0.00 42.52 0.98
2417 2444 3.260884 CACACACACTGGAGTAGGGTATT 59.739 47.826 0.00 0.00 42.52 1.89
2418 2445 2.832129 CACACACACTGGAGTAGGGTAT 59.168 50.000 0.00 0.00 42.52 2.73
2419 2446 2.244695 CACACACACTGGAGTAGGGTA 58.755 52.381 0.00 0.00 42.52 3.69
2420 2447 1.048601 CACACACACTGGAGTAGGGT 58.951 55.000 0.00 0.00 46.36 4.34
2421 2448 0.320771 GCACACACACTGGAGTAGGG 60.321 60.000 0.00 0.00 35.29 3.53
2422 2449 0.681733 AGCACACACACTGGAGTAGG 59.318 55.000 0.00 0.00 0.00 3.18
2423 2450 1.788258 CAGCACACACACTGGAGTAG 58.212 55.000 0.00 0.00 0.00 2.57
2424 2451 3.986970 CAGCACACACACTGGAGTA 57.013 52.632 0.00 0.00 0.00 2.59
2425 2452 4.863707 CAGCACACACACTGGAGT 57.136 55.556 0.00 0.00 0.00 3.85
2429 2456 0.039798 GCAATCCAGCACACACACTG 60.040 55.000 0.00 0.00 0.00 3.66
2430 2457 1.174712 GGCAATCCAGCACACACACT 61.175 55.000 0.00 0.00 35.83 3.55
2431 2458 1.174712 AGGCAATCCAGCACACACAC 61.175 55.000 0.00 0.00 35.83 3.82
2432 2459 0.890542 GAGGCAATCCAGCACACACA 60.891 55.000 0.00 0.00 35.83 3.72
2433 2460 0.607489 AGAGGCAATCCAGCACACAC 60.607 55.000 0.00 0.00 35.83 3.82
2434 2461 0.111061 AAGAGGCAATCCAGCACACA 59.889 50.000 0.00 0.00 35.83 3.72
2435 2462 0.524862 CAAGAGGCAATCCAGCACAC 59.475 55.000 0.00 0.00 35.83 3.82
2436 2463 0.609957 CCAAGAGGCAATCCAGCACA 60.610 55.000 0.00 0.00 35.83 4.57
2437 2464 1.318158 CCCAAGAGGCAATCCAGCAC 61.318 60.000 0.00 0.00 35.83 4.40
2438 2465 1.000521 CCCAAGAGGCAATCCAGCA 60.001 57.895 0.00 0.00 35.83 4.41
2439 2466 3.930504 CCCAAGAGGCAATCCAGC 58.069 61.111 0.00 0.00 33.74 4.85
2448 2475 1.574526 TTCATCCCCAGCCCAAGAGG 61.575 60.000 0.00 0.00 39.47 3.69
2449 2476 0.394899 GTTCATCCCCAGCCCAAGAG 60.395 60.000 0.00 0.00 0.00 2.85
2450 2477 1.139498 TGTTCATCCCCAGCCCAAGA 61.139 55.000 0.00 0.00 0.00 3.02
2451 2478 0.682209 CTGTTCATCCCCAGCCCAAG 60.682 60.000 0.00 0.00 0.00 3.61
2452 2479 1.383799 CTGTTCATCCCCAGCCCAA 59.616 57.895 0.00 0.00 0.00 4.12
2453 2480 1.852157 ACTGTTCATCCCCAGCCCA 60.852 57.895 0.00 0.00 31.76 5.36
2454 2481 1.379044 CACTGTTCATCCCCAGCCC 60.379 63.158 0.00 0.00 31.76 5.19
2455 2482 2.048603 GCACTGTTCATCCCCAGCC 61.049 63.158 0.00 0.00 31.76 4.85
2456 2483 0.895100 TTGCACTGTTCATCCCCAGC 60.895 55.000 0.00 0.00 31.76 4.85
2457 2484 1.171308 CTTGCACTGTTCATCCCCAG 58.829 55.000 0.00 0.00 34.82 4.45
2458 2485 0.251297 CCTTGCACTGTTCATCCCCA 60.251 55.000 0.00 0.00 0.00 4.96
2459 2486 0.967380 CCCTTGCACTGTTCATCCCC 60.967 60.000 0.00 0.00 0.00 4.81
2460 2487 0.967380 CCCCTTGCACTGTTCATCCC 60.967 60.000 0.00 0.00 0.00 3.85
2461 2488 0.038166 TCCCCTTGCACTGTTCATCC 59.962 55.000 0.00 0.00 0.00 3.51
2462 2489 1.815003 CTTCCCCTTGCACTGTTCATC 59.185 52.381 0.00 0.00 0.00 2.92
2463 2490 1.425066 TCTTCCCCTTGCACTGTTCAT 59.575 47.619 0.00 0.00 0.00 2.57
2464 2491 0.843309 TCTTCCCCTTGCACTGTTCA 59.157 50.000 0.00 0.00 0.00 3.18
2465 2492 1.609072 GTTCTTCCCCTTGCACTGTTC 59.391 52.381 0.00 0.00 0.00 3.18
2466 2493 1.064017 TGTTCTTCCCCTTGCACTGTT 60.064 47.619 0.00 0.00 0.00 3.16
2467 2494 0.550914 TGTTCTTCCCCTTGCACTGT 59.449 50.000 0.00 0.00 0.00 3.55
2468 2495 1.242076 CTGTTCTTCCCCTTGCACTG 58.758 55.000 0.00 0.00 0.00 3.66
2469 2496 0.538287 GCTGTTCTTCCCCTTGCACT 60.538 55.000 0.00 0.00 0.00 4.40
2470 2497 1.527433 GGCTGTTCTTCCCCTTGCAC 61.527 60.000 0.00 0.00 0.00 4.57
2471 2498 1.228552 GGCTGTTCTTCCCCTTGCA 60.229 57.895 0.00 0.00 0.00 4.08
2472 2499 0.962855 GAGGCTGTTCTTCCCCTTGC 60.963 60.000 0.00 0.00 0.00 4.01
2473 2500 0.322906 GGAGGCTGTTCTTCCCCTTG 60.323 60.000 0.00 0.00 0.00 3.61
2474 2501 0.476611 AGGAGGCTGTTCTTCCCCTT 60.477 55.000 0.00 0.00 0.00 3.95
2475 2502 1.162085 AGGAGGCTGTTCTTCCCCT 59.838 57.895 0.00 0.00 0.00 4.79
2476 2503 1.201429 TCAGGAGGCTGTTCTTCCCC 61.201 60.000 0.00 0.00 0.00 4.81
2477 2504 0.251634 CTCAGGAGGCTGTTCTTCCC 59.748 60.000 0.00 0.00 0.00 3.97
2478 2505 0.251634 CCTCAGGAGGCTGTTCTTCC 59.748 60.000 1.73 0.00 42.44 3.46
2479 2506 3.851051 CCTCAGGAGGCTGTTCTTC 57.149 57.895 1.73 0.00 42.44 2.87
2489 2516 1.216710 GAACACCTCGCCTCAGGAG 59.783 63.158 0.00 0.00 36.96 3.69
2490 2517 0.832135 AAGAACACCTCGCCTCAGGA 60.832 55.000 0.00 0.00 36.96 3.86
2491 2518 0.671781 CAAGAACACCTCGCCTCAGG 60.672 60.000 0.00 0.00 39.80 3.86
2492 2519 0.034059 ACAAGAACACCTCGCCTCAG 59.966 55.000 0.00 0.00 0.00 3.35
2493 2520 0.249868 CACAAGAACACCTCGCCTCA 60.250 55.000 0.00 0.00 0.00 3.86
2494 2521 1.569479 GCACAAGAACACCTCGCCTC 61.569 60.000 0.00 0.00 0.00 4.70
2495 2522 1.598130 GCACAAGAACACCTCGCCT 60.598 57.895 0.00 0.00 0.00 5.52
2496 2523 1.569479 GAGCACAAGAACACCTCGCC 61.569 60.000 0.00 0.00 0.00 5.54
2497 2524 1.569479 GGAGCACAAGAACACCTCGC 61.569 60.000 0.00 0.00 0.00 5.03
2498 2525 0.034059 AGGAGCACAAGAACACCTCG 59.966 55.000 0.00 0.00 0.00 4.63
2499 2526 1.070758 TCAGGAGCACAAGAACACCTC 59.929 52.381 0.00 0.00 0.00 3.85
2500 2527 1.071385 CTCAGGAGCACAAGAACACCT 59.929 52.381 0.00 0.00 0.00 4.00
2501 2528 1.517242 CTCAGGAGCACAAGAACACC 58.483 55.000 0.00 0.00 0.00 4.16
2514 2541 2.364317 CCCTTCTCCGGCTCAGGA 60.364 66.667 12.85 0.00 38.80 3.86
2515 2542 2.245438 GAACCCTTCTCCGGCTCAGG 62.245 65.000 0.00 0.40 0.00 3.86
2516 2543 1.219393 GAACCCTTCTCCGGCTCAG 59.781 63.158 0.00 0.00 0.00 3.35
2517 2544 2.291043 GGAACCCTTCTCCGGCTCA 61.291 63.158 0.00 0.00 0.00 4.26
2518 2545 2.585153 GGAACCCTTCTCCGGCTC 59.415 66.667 0.00 0.00 0.00 4.70
2523 2550 0.036294 CTGGAACGGAACCCTTCTCC 60.036 60.000 0.00 0.00 36.31 3.71
2524 2551 0.974383 TCTGGAACGGAACCCTTCTC 59.026 55.000 0.00 0.00 43.00 2.87
2525 2552 3.159141 TCTGGAACGGAACCCTTCT 57.841 52.632 0.00 0.00 43.00 2.85
2533 2560 0.606604 GGCAACTAGTCTGGAACGGA 59.393 55.000 0.00 0.00 44.24 4.69
2534 2561 3.139029 GGCAACTAGTCTGGAACGG 57.861 57.895 0.00 0.00 0.00 4.44
2547 2574 0.321653 CCACCACAGTAGGAGGCAAC 60.322 60.000 0.00 0.00 32.56 4.17
2548 2575 2.066340 CCACCACAGTAGGAGGCAA 58.934 57.895 0.00 0.00 32.56 4.52
2549 2576 3.805928 CCACCACAGTAGGAGGCA 58.194 61.111 0.00 0.00 32.56 4.75
2551 2578 1.115467 CTAGCCACCACAGTAGGAGG 58.885 60.000 0.00 0.00 41.77 4.30
2552 2579 1.751924 GACTAGCCACCACAGTAGGAG 59.248 57.143 0.00 0.00 0.00 3.69
2553 2580 1.618888 GGACTAGCCACCACAGTAGGA 60.619 57.143 0.00 0.00 36.34 2.94
2554 2581 0.824759 GGACTAGCCACCACAGTAGG 59.175 60.000 0.00 0.00 36.34 3.18
2555 2582 1.853963 AGGACTAGCCACCACAGTAG 58.146 55.000 6.07 0.00 40.02 2.57
2556 2583 3.682592 ATAGGACTAGCCACCACAGTA 57.317 47.619 6.07 0.00 40.02 2.74
2557 2584 2.552093 ATAGGACTAGCCACCACAGT 57.448 50.000 6.07 0.00 40.02 3.55
2558 2585 3.914426 AAATAGGACTAGCCACCACAG 57.086 47.619 6.07 0.00 40.02 3.66
2559 2586 6.665992 CTATAAATAGGACTAGCCACCACA 57.334 41.667 6.07 0.00 40.02 4.17
2573 2600 1.558294 GACCCGGGCCCCTATAAATAG 59.442 57.143 24.08 0.00 0.00 1.73
2574 2601 1.660242 GACCCGGGCCCCTATAAATA 58.340 55.000 24.08 0.00 0.00 1.40
2575 2602 1.138228 GGACCCGGGCCCCTATAAAT 61.138 60.000 24.08 0.00 0.00 1.40
2576 2603 1.771336 GGACCCGGGCCCCTATAAA 60.771 63.158 24.08 0.00 0.00 1.40
2577 2604 2.122279 GGACCCGGGCCCCTATAA 60.122 66.667 24.08 0.00 0.00 0.98
2578 2605 3.121856 AGGACCCGGGCCCCTATA 61.122 66.667 28.29 0.00 0.00 1.31
2579 2606 4.576374 GAGGACCCGGGCCCCTAT 62.576 72.222 29.13 10.43 0.00 2.57
2589 2616 2.704065 TCGATATTTGGGAAGAGGACCC 59.296 50.000 0.00 0.00 46.87 4.46
2590 2617 3.804063 GCTCGATATTTGGGAAGAGGACC 60.804 52.174 0.00 0.00 0.00 4.46
2591 2618 3.394719 GCTCGATATTTGGGAAGAGGAC 58.605 50.000 0.00 0.00 0.00 3.85
2592 2619 2.035961 CGCTCGATATTTGGGAAGAGGA 59.964 50.000 0.00 0.00 0.00 3.71
2593 2620 2.408050 CGCTCGATATTTGGGAAGAGG 58.592 52.381 0.00 0.00 0.00 3.69
2594 2621 2.408050 CCGCTCGATATTTGGGAAGAG 58.592 52.381 0.00 0.00 0.00 2.85
2595 2622 1.070134 CCCGCTCGATATTTGGGAAGA 59.930 52.381 2.39 0.00 42.77 2.87
2596 2623 1.070134 TCCCGCTCGATATTTGGGAAG 59.930 52.381 7.55 0.00 45.69 3.46
2597 2624 1.124780 TCCCGCTCGATATTTGGGAA 58.875 50.000 7.55 0.00 45.69 3.97
2598 2625 1.070134 CTTCCCGCTCGATATTTGGGA 59.930 52.381 6.27 6.27 46.96 4.37
2599 2626 1.512926 CTTCCCGCTCGATATTTGGG 58.487 55.000 0.00 0.00 41.43 4.12
2600 2627 1.512926 CCTTCCCGCTCGATATTTGG 58.487 55.000 0.00 0.00 0.00 3.28
2601 2628 1.070134 TCCCTTCCCGCTCGATATTTG 59.930 52.381 0.00 0.00 0.00 2.32
2602 2629 1.420430 TCCCTTCCCGCTCGATATTT 58.580 50.000 0.00 0.00 0.00 1.40
2603 2630 1.550976 GATCCCTTCCCGCTCGATATT 59.449 52.381 0.00 0.00 0.00 1.28
2604 2631 1.187087 GATCCCTTCCCGCTCGATAT 58.813 55.000 0.00 0.00 0.00 1.63
2605 2632 0.898789 GGATCCCTTCCCGCTCGATA 60.899 60.000 0.00 0.00 38.75 2.92
2606 2633 2.210711 GGATCCCTTCCCGCTCGAT 61.211 63.158 0.00 0.00 38.75 3.59
2607 2634 2.838225 GGATCCCTTCCCGCTCGA 60.838 66.667 0.00 0.00 38.75 4.04
2614 2641 1.077716 CCGTTGTGGGATCCCTTCC 60.078 63.158 31.05 18.68 44.62 3.46
2615 2642 1.749258 GCCGTTGTGGGATCCCTTC 60.749 63.158 31.05 22.73 38.63 3.46
2616 2643 2.355115 GCCGTTGTGGGATCCCTT 59.645 61.111 31.05 0.00 38.63 3.95
2617 2644 3.728373 GGCCGTTGTGGGATCCCT 61.728 66.667 31.05 0.00 38.63 4.20
2618 2645 2.854300 ATTGGCCGTTGTGGGATCCC 62.854 60.000 25.22 25.22 38.63 3.85
2619 2646 0.970427 AATTGGCCGTTGTGGGATCC 60.970 55.000 1.92 1.92 38.63 3.36
2620 2647 0.894835 AAATTGGCCGTTGTGGGATC 59.105 50.000 0.00 0.00 38.63 3.36
2621 2648 1.001860 CAAAATTGGCCGTTGTGGGAT 59.998 47.619 0.00 0.00 38.63 3.85
2622 2649 0.390860 CAAAATTGGCCGTTGTGGGA 59.609 50.000 0.00 0.00 38.63 4.37
2623 2650 0.390860 TCAAAATTGGCCGTTGTGGG 59.609 50.000 10.12 0.00 38.63 4.61
2624 2651 2.134346 CTTCAAAATTGGCCGTTGTGG 58.866 47.619 10.12 0.00 42.50 4.17
2625 2652 2.134346 CCTTCAAAATTGGCCGTTGTG 58.866 47.619 0.00 0.89 0.00 3.33
2626 2653 1.069978 CCCTTCAAAATTGGCCGTTGT 59.930 47.619 0.00 0.00 0.00 3.32
2627 2654 1.607767 CCCCTTCAAAATTGGCCGTTG 60.608 52.381 0.00 0.00 0.00 4.10
2628 2655 0.684535 CCCCTTCAAAATTGGCCGTT 59.315 50.000 0.00 0.00 0.00 4.44
2629 2656 0.178947 TCCCCTTCAAAATTGGCCGT 60.179 50.000 0.00 0.00 0.00 5.68
2630 2657 0.972883 TTCCCCTTCAAAATTGGCCG 59.027 50.000 0.00 0.00 0.00 6.13
2631 2658 1.696884 TGTTCCCCTTCAAAATTGGCC 59.303 47.619 0.00 0.00 0.00 5.36
2632 2659 3.138304 GTTGTTCCCCTTCAAAATTGGC 58.862 45.455 0.00 0.00 0.00 4.52
2633 2660 4.687901 AGTTGTTCCCCTTCAAAATTGG 57.312 40.909 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.