Multiple sequence alignment - TraesCS6D01G225500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G225500 chr6D 100.000 2370 0 0 663 3032 317106780 317104411 0.000000e+00 4377.0
1 TraesCS6D01G225500 chr6D 100.000 301 0 0 1 301 317107442 317107142 9.500000e-155 556.0
2 TraesCS6D01G225500 chr6D 81.662 349 15 9 1 301 379009578 379009925 8.400000e-61 244.0
3 TraesCS6D01G225500 chr6D 87.805 205 9 1 4 192 348659030 348658826 3.040000e-55 226.0
4 TraesCS6D01G225500 chr6D 83.832 167 27 0 1477 1643 317414372 317414538 3.130000e-35 159.0
5 TraesCS6D01G225500 chr6A 91.496 1705 82 28 758 2417 454712947 454711261 0.000000e+00 2287.0
6 TraesCS6D01G225500 chr6A 87.290 417 29 11 758 1164 454767271 454766869 3.560000e-124 455.0
7 TraesCS6D01G225500 chr6A 89.840 187 10 5 2582 2765 454704451 454704271 6.540000e-57 231.0
8 TraesCS6D01G225500 chr6A 87.079 178 6 8 2868 3032 454702116 454701943 5.160000e-43 185.0
9 TraesCS6D01G225500 chr6A 83.832 167 27 0 1477 1643 454934524 454934690 3.130000e-35 159.0
10 TraesCS6D01G225500 chr6A 92.553 94 6 1 2419 2511 454704671 454704578 1.900000e-27 134.0
11 TraesCS6D01G225500 chr6B 92.961 1506 66 15 822 2306 507404157 507405643 0.000000e+00 2158.0
12 TraesCS6D01G225500 chr6B 91.901 284 14 1 1117 1391 47104139 47104422 3.670000e-104 388.0
13 TraesCS6D01G225500 chr6B 96.135 207 8 0 2305 2511 507405967 507406173 3.740000e-89 339.0
14 TraesCS6D01G225500 chr6B 88.785 214 8 8 2511 2717 507406201 507406405 6.490000e-62 248.0
15 TraesCS6D01G225500 chr6B 98.485 66 1 0 1283 1348 659580540 659580605 1.910000e-22 117.0
16 TraesCS6D01G225500 chr6B 91.176 68 6 0 758 825 507403863 507403930 3.220000e-15 93.5
17 TraesCS6D01G225500 chr2D 83.576 688 80 23 1164 1823 528635391 528636073 5.560000e-172 614.0
18 TraesCS6D01G225500 chr2B 83.602 683 74 25 1169 1820 627073201 627073876 9.300000e-170 606.0
19 TraesCS6D01G225500 chr2B 91.503 306 16 6 1103 1399 150897709 150897405 2.180000e-111 412.0
20 TraesCS6D01G225500 chr2B 91.176 306 17 6 1103 1399 17896669 17896365 1.010000e-109 407.0
21 TraesCS6D01G225500 chr2A 82.657 715 65 37 1159 1823 673327036 673327741 2.030000e-161 579.0
22 TraesCS6D01G225500 chr3D 89.313 262 9 4 4 248 401681685 401681426 8.160000e-81 311.0
23 TraesCS6D01G225500 chr3D 90.104 192 14 3 1 192 511263341 511263155 8.400000e-61 244.0
24 TraesCS6D01G225500 chr3D 79.130 230 29 6 1 214 12113850 12114076 1.130000e-29 141.0
25 TraesCS6D01G225500 chr3D 77.974 227 31 6 4 214 498098418 498098195 1.140000e-24 124.0
26 TraesCS6D01G225500 chr5D 90.987 233 4 2 4 220 422940138 422939907 6.350000e-77 298.0
27 TraesCS6D01G225500 chr5D 85.878 262 6 4 4 235 482573594 482573334 1.800000e-62 250.0
28 TraesCS6D01G225500 chr5D 86.829 205 11 1 4 192 434606247 434606043 6.580000e-52 215.0
29 TraesCS6D01G225500 chr5B 86.567 268 11 6 4 248 70560222 70559957 3.850000e-69 272.0
30 TraesCS6D01G225500 chr5B 85.115 262 20 4 4 248 526646472 526646213 1.800000e-62 250.0
31 TraesCS6D01G225500 chr5B 92.683 41 2 1 2863 2903 581133343 581133382 1.170000e-04 58.4
32 TraesCS6D01G225500 chr5A 84.337 249 10 7 1 220 613743814 613744062 1.830000e-52 217.0
33 TraesCS6D01G225500 chr4D 82.955 264 21 13 1 248 375143325 375143580 1.830000e-52 217.0
34 TraesCS6D01G225500 chr4D 95.238 126 6 0 1 126 61122717 61122842 1.840000e-47 200.0
35 TraesCS6D01G225500 chr4B 94.595 111 6 0 1238 1348 601304689 601304579 4.020000e-39 172.0
36 TraesCS6D01G225500 chr1D 85.030 167 25 0 1477 1643 307420808 307420642 1.450000e-38 171.0
37 TraesCS6D01G225500 chr1A 81.140 228 26 11 4 214 24351327 24351100 1.870000e-37 167.0
38 TraesCS6D01G225500 chr1B 84.024 169 23 3 1477 1643 415744317 415744151 3.130000e-35 159.0
39 TraesCS6D01G225500 chr1B 89.286 56 6 0 2869 2924 94987344 94987289 1.510000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G225500 chr6D 317104411 317107442 3031 True 2466.500 4377 100.00000 1 3032 2 chr6D.!!$R2 3031
1 TraesCS6D01G225500 chr6A 454711261 454712947 1686 True 2287.000 2287 91.49600 758 2417 1 chr6A.!!$R1 1659
2 TraesCS6D01G225500 chr6B 507403863 507406405 2542 False 709.625 2158 92.26425 758 2717 4 chr6B.!!$F3 1959
3 TraesCS6D01G225500 chr2D 528635391 528636073 682 False 614.000 614 83.57600 1164 1823 1 chr2D.!!$F1 659
4 TraesCS6D01G225500 chr2B 627073201 627073876 675 False 606.000 606 83.60200 1169 1820 1 chr2B.!!$F1 651
5 TraesCS6D01G225500 chr2A 673327036 673327741 705 False 579.000 579 82.65700 1159 1823 1 chr2A.!!$F1 664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 1.299014 CTGCCGCTCATCGTCTCTC 60.299 63.158 0.0 0.0 36.19 3.2 F
1023 1269 1.523758 AATCCACTGACAAACGCTCC 58.476 50.000 0.0 0.0 0.00 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1068 1314 0.037303 AGCATCTTGTCCTGTGTGGG 59.963 55.0 0.00 0.00 36.2 4.61 R
2911 3627 0.103572 ACTGTACTTGTTCGGCGTGT 59.896 50.0 6.85 2.33 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.763646 CCGAAACGGGCCCGCTAA 62.764 66.667 43.58 0.00 44.15 3.09
25 26 3.192922 CGAAACGGGCCCGCTAAG 61.193 66.667 43.58 27.78 44.19 2.18
26 27 3.506096 GAAACGGGCCCGCTAAGC 61.506 66.667 43.58 24.07 44.19 3.09
38 39 4.077184 CTAAGCCCCGTCGCCACA 62.077 66.667 0.00 0.00 0.00 4.17
39 40 4.382320 TAAGCCCCGTCGCCACAC 62.382 66.667 0.00 0.00 0.00 3.82
47 48 3.279116 GTCGCCACACTGCAGCAA 61.279 61.111 15.27 0.00 0.00 3.91
48 49 2.974148 TCGCCACACTGCAGCAAG 60.974 61.111 15.27 6.75 0.00 4.01
49 50 4.695231 CGCCACACTGCAGCAAGC 62.695 66.667 15.27 11.00 45.96 4.01
50 51 4.353437 GCCACACTGCAGCAAGCC 62.353 66.667 15.27 0.00 44.83 4.35
51 52 4.034258 CCACACTGCAGCAAGCCG 62.034 66.667 15.27 0.00 44.83 5.52
52 53 4.034258 CACACTGCAGCAAGCCGG 62.034 66.667 15.27 0.00 44.83 6.13
81 82 4.641645 CCAACACCCTGCCGCTCA 62.642 66.667 0.00 0.00 0.00 4.26
82 83 2.360350 CAACACCCTGCCGCTCAT 60.360 61.111 0.00 0.00 0.00 2.90
83 84 2.045926 AACACCCTGCCGCTCATC 60.046 61.111 0.00 0.00 0.00 2.92
84 85 3.958147 AACACCCTGCCGCTCATCG 62.958 63.158 0.00 0.00 38.08 3.84
85 86 4.457496 CACCCTGCCGCTCATCGT 62.457 66.667 0.00 0.00 36.19 3.73
86 87 4.148825 ACCCTGCCGCTCATCGTC 62.149 66.667 0.00 0.00 36.19 4.20
87 88 3.842923 CCCTGCCGCTCATCGTCT 61.843 66.667 0.00 0.00 36.19 4.18
88 89 2.279120 CCTGCCGCTCATCGTCTC 60.279 66.667 0.00 0.00 36.19 3.36
89 90 2.780094 CCTGCCGCTCATCGTCTCT 61.780 63.158 0.00 0.00 36.19 3.10
90 91 1.299014 CTGCCGCTCATCGTCTCTC 60.299 63.158 0.00 0.00 36.19 3.20
91 92 2.026879 GCCGCTCATCGTCTCTCC 59.973 66.667 0.00 0.00 36.19 3.71
92 93 2.725008 CCGCTCATCGTCTCTCCC 59.275 66.667 0.00 0.00 36.19 4.30
93 94 2.725008 CGCTCATCGTCTCTCCCC 59.275 66.667 0.00 0.00 0.00 4.81
94 95 2.851071 CGCTCATCGTCTCTCCCCC 61.851 68.421 0.00 0.00 0.00 5.40
95 96 2.851071 GCTCATCGTCTCTCCCCCG 61.851 68.421 0.00 0.00 0.00 5.73
96 97 2.833582 TCATCGTCTCTCCCCCGC 60.834 66.667 0.00 0.00 0.00 6.13
97 98 3.917760 CATCGTCTCTCCCCCGCC 61.918 72.222 0.00 0.00 0.00 6.13
98 99 4.144727 ATCGTCTCTCCCCCGCCT 62.145 66.667 0.00 0.00 0.00 5.52
99 100 4.816984 TCGTCTCTCCCCCGCCTC 62.817 72.222 0.00 0.00 0.00 4.70
113 114 3.702048 CCTCCCGGAAGCCACGAA 61.702 66.667 0.73 0.00 0.00 3.85
114 115 2.125512 CTCCCGGAAGCCACGAAG 60.126 66.667 0.73 0.00 0.00 3.79
115 116 4.388499 TCCCGGAAGCCACGAAGC 62.388 66.667 0.73 0.00 0.00 3.86
116 117 4.697756 CCCGGAAGCCACGAAGCA 62.698 66.667 0.73 0.00 34.23 3.91
117 118 3.121030 CCGGAAGCCACGAAGCAG 61.121 66.667 0.00 0.00 34.23 4.24
118 119 2.048222 CGGAAGCCACGAAGCAGA 60.048 61.111 0.00 0.00 34.23 4.26
119 120 2.383527 CGGAAGCCACGAAGCAGAC 61.384 63.158 0.00 0.00 34.23 3.51
120 121 2.035442 GGAAGCCACGAAGCAGACC 61.035 63.158 0.00 0.00 34.23 3.85
121 122 2.032681 AAGCCACGAAGCAGACCC 59.967 61.111 0.00 0.00 34.23 4.46
122 123 3.883744 AAGCCACGAAGCAGACCCG 62.884 63.158 0.00 0.00 34.23 5.28
128 129 4.785453 GAAGCAGACCCGCCCAGG 62.785 72.222 0.00 0.00 40.63 4.45
167 168 2.047844 CCATATCTGGGCCGAGCG 60.048 66.667 10.42 0.00 39.04 5.03
168 169 2.047844 CATATCTGGGCCGAGCGG 60.048 66.667 10.42 4.20 38.57 5.52
169 170 3.314331 ATATCTGGGCCGAGCGGG 61.314 66.667 10.42 0.00 39.58 6.13
220 221 4.796231 CCGCCGTCCAGAAGTCCG 62.796 72.222 0.00 0.00 0.00 4.79
223 224 4.452733 CCGTCCAGAAGTCCGCCC 62.453 72.222 0.00 0.00 0.00 6.13
224 225 4.452733 CGTCCAGAAGTCCGCCCC 62.453 72.222 0.00 0.00 0.00 5.80
225 226 4.097361 GTCCAGAAGTCCGCCCCC 62.097 72.222 0.00 0.00 0.00 5.40
250 251 4.530857 CCTAGAAGCACCGCCCGG 62.531 72.222 4.96 4.96 42.03 5.73
251 252 4.530857 CTAGAAGCACCGCCCGGG 62.531 72.222 19.09 19.09 43.62 5.73
287 288 3.391382 GGTGGACACCCGAGGAGG 61.391 72.222 10.38 0.00 45.68 4.30
296 297 3.798511 CCGAGGAGGGGGAAAGCC 61.799 72.222 0.00 0.00 35.97 4.35
297 298 3.009115 CGAGGAGGGGGAAAGCCA 61.009 66.667 0.00 0.00 35.15 4.75
298 299 3.002371 GAGGAGGGGGAAAGCCAG 58.998 66.667 0.00 0.00 35.15 4.85
299 300 2.615288 AGGAGGGGGAAAGCCAGG 60.615 66.667 0.00 0.00 35.15 4.45
300 301 3.744155 GGAGGGGGAAAGCCAGGG 61.744 72.222 0.00 0.00 35.15 4.45
750 751 4.796231 CGGTTCGCGGGAGTGGAG 62.796 72.222 6.13 0.00 41.64 3.86
751 752 3.379445 GGTTCGCGGGAGTGGAGA 61.379 66.667 6.13 0.00 41.64 3.71
752 753 2.182030 GTTCGCGGGAGTGGAGAG 59.818 66.667 6.13 0.00 41.64 3.20
753 754 3.068691 TTCGCGGGAGTGGAGAGG 61.069 66.667 6.13 0.00 41.64 3.69
754 755 3.578968 TTCGCGGGAGTGGAGAGGA 62.579 63.158 6.13 0.00 41.64 3.71
755 756 3.522731 CGCGGGAGTGGAGAGGAG 61.523 72.222 0.00 0.00 36.53 3.69
756 757 3.844090 GCGGGAGTGGAGAGGAGC 61.844 72.222 0.00 0.00 0.00 4.70
774 775 6.264744 AGAGGAGCCTTAGTGGTTTTTAAAAC 59.735 38.462 11.71 11.71 38.35 2.43
815 816 6.280855 TGAAGGAGTGATTAGTGAAATCGA 57.719 37.500 0.00 0.00 46.03 3.59
872 1114 9.274206 CTAATCCACCATATCATCATCATCATC 57.726 37.037 0.00 0.00 0.00 2.92
1023 1269 1.523758 AATCCACTGACAAACGCTCC 58.476 50.000 0.00 0.00 0.00 4.70
1053 1299 3.181477 CCAAGAGCGAACTCAGATCATCT 60.181 47.826 0.00 0.00 46.09 2.90
1055 1301 4.734398 AGAGCGAACTCAGATCATCTTT 57.266 40.909 0.00 0.00 46.09 2.52
1068 1314 1.741770 ATCTTTGGACCAGACGCGC 60.742 57.895 5.73 0.00 0.00 6.86
1706 2036 2.202492 CAGAAGCGTCCGTCTCCG 60.202 66.667 0.00 0.00 0.00 4.63
1742 2072 0.553862 ACTCTCCTCCTCCCTCCTCA 60.554 60.000 0.00 0.00 0.00 3.86
1944 2275 1.211969 CGTTCTCATGACCGACGGT 59.788 57.895 21.93 21.93 39.44 4.83
1945 2276 0.388134 CGTTCTCATGACCGACGGTT 60.388 55.000 22.69 2.52 35.25 4.44
1970 2309 9.567776 TTATTAGTTCTTCCTTCATGTGTTGAA 57.432 29.630 0.00 0.00 42.09 2.69
1975 2314 2.582052 TCCTTCATGTGTTGAACCCAC 58.418 47.619 0.00 0.00 39.44 4.61
1980 2319 0.762418 ATGTGTTGAACCCACGGAGA 59.238 50.000 0.00 0.00 35.56 3.71
2107 2449 2.390938 CGTGTGAAACTTGTCGCTAGA 58.609 47.619 0.00 0.00 38.04 2.43
2149 2491 0.311790 CAAGTGTGCGCAGTGGAATT 59.688 50.000 12.22 0.00 0.00 2.17
2151 2493 0.250467 AGTGTGCGCAGTGGAATTCT 60.250 50.000 12.22 0.00 0.00 2.40
2179 2521 1.416401 GGTTTGTGAGAGGTGGTGAGA 59.584 52.381 0.00 0.00 0.00 3.27
2252 2594 2.638556 TGTTCAACCGTTGTTTGGTG 57.361 45.000 11.01 0.00 40.35 4.17
2256 2610 1.944024 TCAACCGTTGTTTGGTGCTAG 59.056 47.619 11.01 0.00 40.35 3.42
2257 2611 0.666374 AACCGTTGTTTGGTGCTAGC 59.334 50.000 8.10 8.10 40.35 3.42
2269 2623 1.649664 GTGCTAGCATCAGTGAGTGG 58.350 55.000 22.51 0.00 0.00 4.00
2422 3103 6.463995 AGGAGCACATGTTTTTGACTTTTA 57.536 33.333 0.00 0.00 0.00 1.52
2535 3244 2.911819 ACAAACGTGAAATATGCGGG 57.088 45.000 0.00 0.00 0.00 6.13
2574 3283 0.032952 ACTCGCGGACTAAGCAAACA 59.967 50.000 6.13 0.00 34.19 2.83
2575 3284 0.438830 CTCGCGGACTAAGCAAACAC 59.561 55.000 6.13 0.00 34.19 3.32
2576 3285 0.249531 TCGCGGACTAAGCAAACACA 60.250 50.000 6.13 0.00 34.19 3.72
2577 3286 0.110823 CGCGGACTAAGCAAACACAC 60.111 55.000 0.00 0.00 34.19 3.82
2578 3287 1.226746 GCGGACTAAGCAAACACACT 58.773 50.000 0.00 0.00 34.19 3.55
2612 3321 1.729881 GTTGAGGCGATGGATTGGC 59.270 57.895 0.00 0.00 37.03 4.52
2661 3377 3.128242 GTGCATCATCAACTTTGAGAGGG 59.872 47.826 0.00 0.00 41.08 4.30
2678 3394 0.328592 GGGGAGGGAACAAAGGAGTC 59.671 60.000 0.00 0.00 0.00 3.36
2684 3400 4.006319 GAGGGAACAAAGGAGTCAAGATG 58.994 47.826 0.00 0.00 0.00 2.90
2693 3409 4.982241 AGGAGTCAAGATGTCCTTTTGA 57.018 40.909 0.00 0.00 37.42 2.69
2694 3410 5.511386 AGGAGTCAAGATGTCCTTTTGAT 57.489 39.130 0.00 0.00 37.42 2.57
2695 3411 5.495640 AGGAGTCAAGATGTCCTTTTGATC 58.504 41.667 0.00 0.00 37.42 2.92
2696 3412 5.013495 AGGAGTCAAGATGTCCTTTTGATCA 59.987 40.000 0.00 0.00 37.42 2.92
2697 3413 5.123027 GGAGTCAAGATGTCCTTTTGATCAC 59.877 44.000 0.00 0.00 33.82 3.06
2743 3459 7.829378 AACAAACGACTAGGAAATGAGATAC 57.171 36.000 0.00 0.00 0.00 2.24
2744 3460 6.338937 ACAAACGACTAGGAAATGAGATACC 58.661 40.000 0.00 0.00 0.00 2.73
2745 3461 6.154706 ACAAACGACTAGGAAATGAGATACCT 59.845 38.462 0.00 0.00 36.65 3.08
2746 3462 6.394025 AACGACTAGGAAATGAGATACCTC 57.606 41.667 0.00 0.00 39.86 3.85
2747 3463 4.515944 ACGACTAGGAAATGAGATACCTCG 59.484 45.833 0.00 0.00 42.33 4.63
2748 3464 4.515944 CGACTAGGAAATGAGATACCTCGT 59.484 45.833 0.00 0.00 42.33 4.18
2749 3465 5.561145 CGACTAGGAAATGAGATACCTCGTG 60.561 48.000 0.00 0.00 42.33 4.35
2750 3466 3.460857 AGGAAATGAGATACCTCGTGC 57.539 47.619 0.00 0.00 42.33 5.34
2751 3467 3.034635 AGGAAATGAGATACCTCGTGCT 58.965 45.455 0.00 0.00 42.33 4.40
2752 3468 3.452627 AGGAAATGAGATACCTCGTGCTT 59.547 43.478 0.00 0.00 42.33 3.91
2753 3469 4.649674 AGGAAATGAGATACCTCGTGCTTA 59.350 41.667 0.00 0.00 42.33 3.09
2754 3470 5.305644 AGGAAATGAGATACCTCGTGCTTAT 59.694 40.000 0.00 0.00 42.33 1.73
2755 3471 5.635700 GGAAATGAGATACCTCGTGCTTATC 59.364 44.000 0.00 0.00 42.33 1.75
2756 3472 4.792521 ATGAGATACCTCGTGCTTATCC 57.207 45.455 0.00 0.00 42.33 2.59
2757 3473 3.562182 TGAGATACCTCGTGCTTATCCA 58.438 45.455 0.00 0.00 42.33 3.41
2758 3474 4.152647 TGAGATACCTCGTGCTTATCCAT 58.847 43.478 0.00 0.00 42.33 3.41
2759 3475 4.021981 TGAGATACCTCGTGCTTATCCATG 60.022 45.833 0.00 0.00 42.33 3.66
2760 3476 3.259374 AGATACCTCGTGCTTATCCATGG 59.741 47.826 4.97 4.97 0.00 3.66
2761 3477 1.204146 ACCTCGTGCTTATCCATGGT 58.796 50.000 12.58 1.59 0.00 3.55
2762 3478 1.559682 ACCTCGTGCTTATCCATGGTT 59.440 47.619 12.58 6.02 0.00 3.67
2763 3479 2.769663 ACCTCGTGCTTATCCATGGTTA 59.230 45.455 12.58 4.84 0.00 2.85
2764 3480 3.199071 ACCTCGTGCTTATCCATGGTTAA 59.801 43.478 12.58 13.10 0.00 2.01
2765 3481 4.196193 CCTCGTGCTTATCCATGGTTAAA 58.804 43.478 12.58 3.93 0.00 1.52
2766 3482 4.638421 CCTCGTGCTTATCCATGGTTAAAA 59.362 41.667 12.58 2.87 0.00 1.52
2767 3483 5.448632 CCTCGTGCTTATCCATGGTTAAAAC 60.449 44.000 12.58 13.15 0.00 2.43
2768 3484 5.004448 TCGTGCTTATCCATGGTTAAAACA 58.996 37.500 12.58 11.80 0.00 2.83
2769 3485 5.650266 TCGTGCTTATCCATGGTTAAAACAT 59.350 36.000 12.58 0.00 0.00 2.71
2770 3486 6.151985 TCGTGCTTATCCATGGTTAAAACATT 59.848 34.615 12.58 0.00 0.00 2.71
2771 3487 6.253298 CGTGCTTATCCATGGTTAAAACATTG 59.747 38.462 12.58 8.28 0.00 2.82
2772 3488 6.035975 GTGCTTATCCATGGTTAAAACATTGC 59.964 38.462 12.58 12.31 0.00 3.56
2773 3489 6.070881 TGCTTATCCATGGTTAAAACATTGCT 60.071 34.615 12.58 0.00 0.00 3.91
2774 3490 6.818142 GCTTATCCATGGTTAAAACATTGCTT 59.182 34.615 12.58 0.00 0.00 3.91
2775 3491 7.978975 GCTTATCCATGGTTAAAACATTGCTTA 59.021 33.333 12.58 0.00 0.00 3.09
2795 3511 9.868277 TTGCTTATTTATGTAAGACCAAAATGG 57.132 29.630 0.00 0.00 36.60 3.16
2811 3527 7.645058 CCAAAATGGTCTTATGGTCTTACAT 57.355 36.000 0.00 0.00 31.35 2.29
2812 3528 8.066612 CCAAAATGGTCTTATGGTCTTACATT 57.933 34.615 0.00 0.00 31.35 2.71
2813 3529 8.531146 CCAAAATGGTCTTATGGTCTTACATTT 58.469 33.333 0.00 0.00 38.49 2.32
2817 3533 8.980481 ATGGTCTTATGGTCTTACATTTAAGG 57.020 34.615 0.00 0.00 36.15 2.69
2818 3534 8.153221 TGGTCTTATGGTCTTACATTTAAGGA 57.847 34.615 0.00 0.00 36.15 3.36
2819 3535 8.044908 TGGTCTTATGGTCTTACATTTAAGGAC 58.955 37.037 0.00 0.00 36.15 3.85
2820 3536 7.224167 GGTCTTATGGTCTTACATTTAAGGACG 59.776 40.741 0.00 0.00 36.15 4.79
2821 3537 7.977853 GTCTTATGGTCTTACATTTAAGGACGA 59.022 37.037 0.00 0.00 36.15 4.20
2822 3538 8.195436 TCTTATGGTCTTACATTTAAGGACGAG 58.805 37.037 0.00 0.00 36.15 4.18
2823 3539 5.080969 TGGTCTTACATTTAAGGACGAGG 57.919 43.478 0.00 0.00 36.15 4.63
2824 3540 4.081309 TGGTCTTACATTTAAGGACGAGGG 60.081 45.833 0.00 0.00 36.15 4.30
2825 3541 4.161001 GGTCTTACATTTAAGGACGAGGGA 59.839 45.833 0.00 0.00 36.15 4.20
2826 3542 5.349809 GTCTTACATTTAAGGACGAGGGAG 58.650 45.833 0.00 0.00 36.15 4.30
2827 3543 4.404715 TCTTACATTTAAGGACGAGGGAGG 59.595 45.833 0.00 0.00 36.15 4.30
2828 3544 2.547990 ACATTTAAGGACGAGGGAGGT 58.452 47.619 0.00 0.00 0.00 3.85
2829 3545 3.716431 ACATTTAAGGACGAGGGAGGTA 58.284 45.455 0.00 0.00 0.00 3.08
2830 3546 4.098894 ACATTTAAGGACGAGGGAGGTAA 58.901 43.478 0.00 0.00 0.00 2.85
2831 3547 4.720273 ACATTTAAGGACGAGGGAGGTAAT 59.280 41.667 0.00 0.00 0.00 1.89
2832 3548 5.191124 ACATTTAAGGACGAGGGAGGTAATT 59.809 40.000 0.00 0.00 0.00 1.40
2833 3549 6.384886 ACATTTAAGGACGAGGGAGGTAATTA 59.615 38.462 0.00 0.00 0.00 1.40
2834 3550 6.872585 TTTAAGGACGAGGGAGGTAATTAA 57.127 37.500 0.00 0.00 0.00 1.40
2835 3551 6.475596 TTAAGGACGAGGGAGGTAATTAAG 57.524 41.667 0.00 0.00 0.00 1.85
2836 3552 4.261411 AGGACGAGGGAGGTAATTAAGA 57.739 45.455 0.00 0.00 0.00 2.10
2837 3553 4.617593 AGGACGAGGGAGGTAATTAAGAA 58.382 43.478 0.00 0.00 0.00 2.52
2838 3554 5.028131 AGGACGAGGGAGGTAATTAAGAAA 58.972 41.667 0.00 0.00 0.00 2.52
2839 3555 5.486419 AGGACGAGGGAGGTAATTAAGAAAA 59.514 40.000 0.00 0.00 0.00 2.29
2840 3556 5.816258 GGACGAGGGAGGTAATTAAGAAAAG 59.184 44.000 0.00 0.00 0.00 2.27
2841 3557 5.742063 ACGAGGGAGGTAATTAAGAAAAGG 58.258 41.667 0.00 0.00 0.00 3.11
2842 3558 5.486419 ACGAGGGAGGTAATTAAGAAAAGGA 59.514 40.000 0.00 0.00 0.00 3.36
2843 3559 6.013119 ACGAGGGAGGTAATTAAGAAAAGGAA 60.013 38.462 0.00 0.00 0.00 3.36
2844 3560 7.054751 CGAGGGAGGTAATTAAGAAAAGGAAT 58.945 38.462 0.00 0.00 0.00 3.01
2845 3561 8.208903 CGAGGGAGGTAATTAAGAAAAGGAATA 58.791 37.037 0.00 0.00 0.00 1.75
2846 3562 9.562408 GAGGGAGGTAATTAAGAAAAGGAATAG 57.438 37.037 0.00 0.00 0.00 1.73
2847 3563 9.292751 AGGGAGGTAATTAAGAAAAGGAATAGA 57.707 33.333 0.00 0.00 0.00 1.98
2848 3564 9.562408 GGGAGGTAATTAAGAAAAGGAATAGAG 57.438 37.037 0.00 0.00 0.00 2.43
2859 3575 9.799106 AAGAAAAGGAATAGAGTTGATTTCAGA 57.201 29.630 0.00 0.00 0.00 3.27
2860 3576 9.799106 AGAAAAGGAATAGAGTTGATTTCAGAA 57.201 29.630 0.00 0.00 0.00 3.02
2862 3578 9.799106 AAAAGGAATAGAGTTGATTTCAGAAGA 57.201 29.630 0.00 0.00 0.00 2.87
2863 3579 9.799106 AAAGGAATAGAGTTGATTTCAGAAGAA 57.201 29.630 0.00 0.00 0.00 2.52
2864 3580 9.799106 AAGGAATAGAGTTGATTTCAGAAGAAA 57.201 29.630 0.00 0.00 46.90 2.52
2865 3581 9.799106 AGGAATAGAGTTGATTTCAGAAGAAAA 57.201 29.630 0.00 0.00 46.06 2.29
2893 3609 9.841295 AAGGAATAGAGTTTAGTTTGTGTTACA 57.159 29.630 0.00 0.00 0.00 2.41
2894 3610 9.841295 AGGAATAGAGTTTAGTTTGTGTTACAA 57.159 29.630 0.00 0.00 36.11 2.41
2895 3611 9.874215 GGAATAGAGTTTAGTTTGTGTTACAAC 57.126 33.333 0.00 0.00 37.90 3.32
2912 3628 3.022287 CACGGACAGTGCCACAAC 58.978 61.111 0.00 0.00 44.72 3.32
2913 3629 1.817520 CACGGACAGTGCCACAACA 60.818 57.895 0.00 0.00 44.72 3.33
2914 3630 1.817941 ACGGACAGTGCCACAACAC 60.818 57.895 0.00 0.00 41.02 3.32
2915 3631 2.881266 CGGACAGTGCCACAACACG 61.881 63.158 0.00 0.00 45.45 4.49
2916 3632 2.327940 GACAGTGCCACAACACGC 59.672 61.111 0.00 0.00 45.45 5.34
2917 3633 3.181169 GACAGTGCCACAACACGCC 62.181 63.158 0.00 0.00 45.45 5.68
2918 3634 4.312231 CAGTGCCACAACACGCCG 62.312 66.667 0.00 0.00 45.45 6.46
2919 3635 4.539083 AGTGCCACAACACGCCGA 62.539 61.111 0.00 0.00 45.45 5.54
2920 3636 3.578272 GTGCCACAACACGCCGAA 61.578 61.111 0.00 0.00 0.00 4.30
2921 3637 3.578272 TGCCACAACACGCCGAAC 61.578 61.111 0.00 0.00 0.00 3.95
2922 3638 3.578272 GCCACAACACGCCGAACA 61.578 61.111 0.00 0.00 0.00 3.18
2923 3639 3.102985 CCACAACACGCCGAACAA 58.897 55.556 0.00 0.00 0.00 2.83
2924 3640 1.010125 CCACAACACGCCGAACAAG 60.010 57.895 0.00 0.00 0.00 3.16
2925 3641 1.711060 CCACAACACGCCGAACAAGT 61.711 55.000 0.00 0.00 0.00 3.16
2926 3642 0.931702 CACAACACGCCGAACAAGTA 59.068 50.000 0.00 0.00 0.00 2.24
2927 3643 0.932399 ACAACACGCCGAACAAGTAC 59.068 50.000 0.00 0.00 0.00 2.73
2928 3644 0.931702 CAACACGCCGAACAAGTACA 59.068 50.000 0.00 0.00 0.00 2.90
2929 3645 1.070843 CAACACGCCGAACAAGTACAG 60.071 52.381 0.00 0.00 0.00 2.74
2930 3646 0.103572 ACACGCCGAACAAGTACAGT 59.896 50.000 0.00 0.00 0.00 3.55
2931 3647 1.337703 ACACGCCGAACAAGTACAGTA 59.662 47.619 0.00 0.00 0.00 2.74
2932 3648 1.983605 CACGCCGAACAAGTACAGTAG 59.016 52.381 0.00 0.00 0.00 2.57
2933 3649 1.610522 ACGCCGAACAAGTACAGTAGT 59.389 47.619 0.00 0.00 0.00 2.73
2934 3650 2.813754 ACGCCGAACAAGTACAGTAGTA 59.186 45.455 0.00 0.00 0.00 1.82
2935 3651 3.441572 ACGCCGAACAAGTACAGTAGTAT 59.558 43.478 0.00 0.00 31.84 2.12
2936 3652 4.635765 ACGCCGAACAAGTACAGTAGTATA 59.364 41.667 0.00 0.00 31.84 1.47
2937 3653 5.297776 ACGCCGAACAAGTACAGTAGTATAT 59.702 40.000 0.00 0.00 31.84 0.86
2938 3654 6.483307 ACGCCGAACAAGTACAGTAGTATATA 59.517 38.462 0.00 0.00 31.84 0.86
2939 3655 6.794158 CGCCGAACAAGTACAGTAGTATATAC 59.206 42.308 4.60 4.60 31.84 1.47
2940 3656 7.080724 GCCGAACAAGTACAGTAGTATATACC 58.919 42.308 9.32 0.00 31.84 2.73
2941 3657 7.255242 GCCGAACAAGTACAGTAGTATATACCA 60.255 40.741 9.32 0.00 31.84 3.25
2942 3658 8.623903 CCGAACAAGTACAGTAGTATATACCAA 58.376 37.037 9.32 0.00 31.84 3.67
2943 3659 9.661187 CGAACAAGTACAGTAGTATATACCAAG 57.339 37.037 9.32 0.66 31.84 3.61
2957 3673 8.989131 AGTATATACCAAGTACATTTCAGTGGT 58.011 33.333 9.32 0.00 42.00 4.16
2961 3677 8.732746 ATACCAAGTACATTTCAGTGGTAATC 57.267 34.615 4.59 0.00 43.02 1.75
2962 3678 5.944007 ACCAAGTACATTTCAGTGGTAATCC 59.056 40.000 0.00 0.00 37.60 3.01
2963 3679 5.064707 CCAAGTACATTTCAGTGGTAATCCG 59.935 44.000 0.00 0.00 36.30 4.18
2964 3680 5.416271 AGTACATTTCAGTGGTAATCCGT 57.584 39.130 0.00 0.00 36.30 4.69
2965 3681 6.534475 AGTACATTTCAGTGGTAATCCGTA 57.466 37.500 0.00 0.00 36.30 4.02
2966 3682 7.120923 AGTACATTTCAGTGGTAATCCGTAT 57.879 36.000 0.00 0.00 36.30 3.06
2967 3683 6.984474 AGTACATTTCAGTGGTAATCCGTATG 59.016 38.462 0.00 0.00 36.30 2.39
2968 3684 5.984725 ACATTTCAGTGGTAATCCGTATGA 58.015 37.500 0.00 0.00 36.30 2.15
2969 3685 6.411376 ACATTTCAGTGGTAATCCGTATGAA 58.589 36.000 0.00 0.00 36.30 2.57
2970 3686 7.054124 ACATTTCAGTGGTAATCCGTATGAAT 58.946 34.615 0.00 0.00 34.46 2.57
2971 3687 7.556275 ACATTTCAGTGGTAATCCGTATGAATT 59.444 33.333 0.00 0.00 34.46 2.17
2972 3688 7.931578 TTTCAGTGGTAATCCGTATGAATTT 57.068 32.000 0.00 0.00 34.46 1.82
2973 3689 6.918892 TCAGTGGTAATCCGTATGAATTTG 57.081 37.500 0.00 0.00 36.30 2.32
2974 3690 5.820423 TCAGTGGTAATCCGTATGAATTTGG 59.180 40.000 0.00 0.00 36.30 3.28
2975 3691 5.588648 CAGTGGTAATCCGTATGAATTTGGT 59.411 40.000 0.00 0.00 36.30 3.67
2976 3692 6.764085 CAGTGGTAATCCGTATGAATTTGGTA 59.236 38.462 0.00 0.00 36.30 3.25
2977 3693 6.990349 AGTGGTAATCCGTATGAATTTGGTAG 59.010 38.462 0.00 0.00 36.30 3.18
2978 3694 6.764560 GTGGTAATCCGTATGAATTTGGTAGT 59.235 38.462 0.00 0.00 36.30 2.73
2979 3695 7.927629 GTGGTAATCCGTATGAATTTGGTAGTA 59.072 37.037 0.00 0.00 36.30 1.82
2980 3696 8.653191 TGGTAATCCGTATGAATTTGGTAGTAT 58.347 33.333 0.00 0.00 36.30 2.12
2986 3702 9.887629 TCCGTATGAATTTGGTAGTATAAAACA 57.112 29.630 0.00 0.00 0.00 2.83
2992 3708 9.535170 TGAATTTGGTAGTATAAAACAATGGGA 57.465 29.630 0.00 0.00 0.00 4.37
2997 3713 9.535170 TTGGTAGTATAAAACAATGGGAATTCA 57.465 29.630 7.93 0.00 0.00 2.57
2998 3714 9.707957 TGGTAGTATAAAACAATGGGAATTCAT 57.292 29.630 7.93 0.00 0.00 2.57
3000 3716 9.878599 GTAGTATAAAACAATGGGAATTCATCG 57.121 33.333 7.93 0.00 0.00 3.84
3001 3717 8.519799 AGTATAAAACAATGGGAATTCATCGT 57.480 30.769 7.93 0.00 0.00 3.73
3002 3718 8.621286 AGTATAAAACAATGGGAATTCATCGTC 58.379 33.333 7.93 0.00 0.00 4.20
3003 3719 4.355543 AAACAATGGGAATTCATCGTCG 57.644 40.909 7.93 0.00 0.00 5.12
3004 3720 2.985896 ACAATGGGAATTCATCGTCGT 58.014 42.857 7.93 0.00 0.00 4.34
3005 3721 2.936498 ACAATGGGAATTCATCGTCGTC 59.064 45.455 7.93 0.00 0.00 4.20
3006 3722 2.935849 CAATGGGAATTCATCGTCGTCA 59.064 45.455 7.93 0.00 0.00 4.35
3007 3723 2.979814 TGGGAATTCATCGTCGTCAT 57.020 45.000 7.93 0.00 0.00 3.06
3008 3724 2.821546 TGGGAATTCATCGTCGTCATC 58.178 47.619 7.93 0.00 0.00 2.92
3009 3725 1.787155 GGGAATTCATCGTCGTCATCG 59.213 52.381 7.93 0.00 38.55 3.84
3010 3726 1.190323 GGAATTCATCGTCGTCATCGC 59.810 52.381 7.93 0.00 36.96 4.58
3011 3727 1.190323 GAATTCATCGTCGTCATCGCC 59.810 52.381 0.00 0.00 36.96 5.54
3012 3728 0.934901 ATTCATCGTCGTCATCGCCG 60.935 55.000 0.00 0.00 39.77 6.46
3013 3729 3.682315 CATCGTCGTCATCGCCGC 61.682 66.667 0.00 0.00 38.31 6.53
3014 3730 4.925576 ATCGTCGTCATCGCCGCC 62.926 66.667 0.00 0.00 38.31 6.13
3020 3736 2.509786 GTCATCGCCGCCGGTTTA 60.510 61.111 4.45 0.00 34.56 2.01
3021 3737 2.101835 GTCATCGCCGCCGGTTTAA 61.102 57.895 4.45 0.00 34.56 1.52
3022 3738 1.812093 TCATCGCCGCCGGTTTAAG 60.812 57.895 4.45 0.00 34.56 1.85
3023 3739 2.512974 ATCGCCGCCGGTTTAAGG 60.513 61.111 4.45 0.14 34.56 2.69
3024 3740 3.021473 ATCGCCGCCGGTTTAAGGA 62.021 57.895 4.45 0.00 34.56 3.36
3025 3741 2.918230 ATCGCCGCCGGTTTAAGGAG 62.918 60.000 4.45 1.35 34.56 3.69
3026 3742 2.046604 GCCGCCGGTTTAAGGAGT 60.047 61.111 4.45 0.00 0.00 3.85
3027 3743 2.396157 GCCGCCGGTTTAAGGAGTG 61.396 63.158 4.45 0.00 0.00 3.51
3028 3744 1.294138 CCGCCGGTTTAAGGAGTGA 59.706 57.895 1.90 0.00 0.00 3.41
3029 3745 0.107848 CCGCCGGTTTAAGGAGTGAT 60.108 55.000 1.90 0.00 0.00 3.06
3030 3746 1.006832 CGCCGGTTTAAGGAGTGATG 58.993 55.000 1.90 0.00 0.00 3.07
3031 3747 0.733150 GCCGGTTTAAGGAGTGATGC 59.267 55.000 1.90 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.192922 CTTAGCGGGCCCGTTTCG 61.193 66.667 42.53 27.01 42.09 3.46
21 22 4.077184 TGTGGCGACGGGGCTTAG 62.077 66.667 0.00 0.00 42.84 2.18
22 23 4.382320 GTGTGGCGACGGGGCTTA 62.382 66.667 0.00 0.00 42.84 3.09
30 31 3.245948 CTTGCTGCAGTGTGGCGAC 62.246 63.158 16.64 0.00 36.28 5.19
31 32 2.974148 CTTGCTGCAGTGTGGCGA 60.974 61.111 16.64 0.00 36.28 5.54
32 33 4.695231 GCTTGCTGCAGTGTGGCG 62.695 66.667 16.64 0.00 42.31 5.69
33 34 4.353437 GGCTTGCTGCAGTGTGGC 62.353 66.667 16.64 13.37 45.15 5.01
34 35 4.034258 CGGCTTGCTGCAGTGTGG 62.034 66.667 16.64 4.77 45.15 4.17
35 36 4.034258 CCGGCTTGCTGCAGTGTG 62.034 66.667 16.64 6.60 45.15 3.82
64 65 3.925630 ATGAGCGGCAGGGTGTTGG 62.926 63.158 1.45 0.00 0.00 3.77
65 66 2.360350 ATGAGCGGCAGGGTGTTG 60.360 61.111 1.45 0.00 0.00 3.33
66 67 2.045926 GATGAGCGGCAGGGTGTT 60.046 61.111 1.45 0.00 0.00 3.32
67 68 4.457496 CGATGAGCGGCAGGGTGT 62.457 66.667 1.45 0.00 36.03 4.16
68 69 4.457496 ACGATGAGCGGCAGGGTG 62.457 66.667 1.45 0.00 46.49 4.61
75 76 2.725008 GGGAGAGACGATGAGCGG 59.275 66.667 0.00 0.00 46.49 5.52
77 78 2.851071 CGGGGGAGAGACGATGAGC 61.851 68.421 0.00 0.00 0.00 4.26
78 79 2.851071 GCGGGGGAGAGACGATGAG 61.851 68.421 0.00 0.00 0.00 2.90
79 80 2.833582 GCGGGGGAGAGACGATGA 60.834 66.667 0.00 0.00 0.00 2.92
80 81 3.917760 GGCGGGGGAGAGACGATG 61.918 72.222 0.00 0.00 0.00 3.84
81 82 4.144727 AGGCGGGGGAGAGACGAT 62.145 66.667 0.00 0.00 0.00 3.73
82 83 4.816984 GAGGCGGGGGAGAGACGA 62.817 72.222 0.00 0.00 0.00 4.20
97 98 2.125512 CTTCGTGGCTTCCGGGAG 60.126 66.667 4.95 4.95 0.00 4.30
98 99 4.388499 GCTTCGTGGCTTCCGGGA 62.388 66.667 0.00 0.00 0.00 5.14
99 100 4.697756 TGCTTCGTGGCTTCCGGG 62.698 66.667 0.00 0.00 0.00 5.73
100 101 3.121030 CTGCTTCGTGGCTTCCGG 61.121 66.667 0.00 0.00 0.00 5.14
101 102 2.048222 TCTGCTTCGTGGCTTCCG 60.048 61.111 4.36 0.00 0.00 4.30
102 103 2.035442 GGTCTGCTTCGTGGCTTCC 61.035 63.158 4.36 0.00 0.00 3.46
103 104 2.035442 GGGTCTGCTTCGTGGCTTC 61.035 63.158 4.36 0.00 0.00 3.86
104 105 2.032681 GGGTCTGCTTCGTGGCTT 59.967 61.111 4.36 0.00 0.00 4.35
105 106 4.379243 CGGGTCTGCTTCGTGGCT 62.379 66.667 4.36 0.00 0.00 4.75
111 112 4.785453 CCTGGGCGGGTCTGCTTC 62.785 72.222 1.58 0.00 34.52 3.86
130 131 4.195334 CCTTCGGGCCCCATCTGG 62.195 72.222 18.66 7.92 0.00 3.86
131 132 4.195334 CCCTTCGGGCCCCATCTG 62.195 72.222 18.66 0.58 35.35 2.90
141 142 1.376466 CCAGATATGGGCCCTTCGG 59.624 63.158 25.70 16.87 0.00 4.30
142 143 1.376466 CCCAGATATGGGCCCTTCG 59.624 63.158 25.70 12.65 42.99 3.79
150 151 2.047844 CGCTCGGCCCAGATATGG 60.048 66.667 0.00 0.00 0.00 2.74
151 152 2.047844 CCGCTCGGCCCAGATATG 60.048 66.667 0.00 0.00 0.00 1.78
152 153 3.314331 CCCGCTCGGCCCAGATAT 61.314 66.667 0.00 0.00 0.00 1.63
203 204 4.796231 CGGACTTCTGGACGGCGG 62.796 72.222 13.24 0.00 0.00 6.13
206 207 4.452733 GGGCGGACTTCTGGACGG 62.453 72.222 0.00 0.00 0.00 4.79
207 208 4.452733 GGGGCGGACTTCTGGACG 62.453 72.222 0.00 0.00 0.00 4.79
208 209 4.097361 GGGGGCGGACTTCTGGAC 62.097 72.222 0.00 0.00 0.00 4.02
233 234 4.530857 CCGGGCGGTGCTTCTAGG 62.531 72.222 0.00 0.00 0.00 3.02
234 235 4.530857 CCCGGGCGGTGCTTCTAG 62.531 72.222 8.08 0.00 0.00 2.43
279 280 3.798511 GGCTTTCCCCCTCCTCGG 61.799 72.222 0.00 0.00 0.00 4.63
280 281 3.009115 TGGCTTTCCCCCTCCTCG 61.009 66.667 0.00 0.00 0.00 4.63
281 282 2.684499 CCTGGCTTTCCCCCTCCTC 61.684 68.421 0.00 0.00 0.00 3.71
282 283 2.615288 CCTGGCTTTCCCCCTCCT 60.615 66.667 0.00 0.00 0.00 3.69
283 284 3.744155 CCCTGGCTTTCCCCCTCC 61.744 72.222 0.00 0.00 0.00 4.30
733 734 4.796231 CTCCACTCCCGCGAACCG 62.796 72.222 8.23 0.00 0.00 4.44
734 735 3.358076 CTCTCCACTCCCGCGAACC 62.358 68.421 8.23 0.00 0.00 3.62
735 736 2.182030 CTCTCCACTCCCGCGAAC 59.818 66.667 8.23 0.00 0.00 3.95
736 737 3.068691 CCTCTCCACTCCCGCGAA 61.069 66.667 8.23 0.00 0.00 4.70
737 738 3.997400 CTCCTCTCCACTCCCGCGA 62.997 68.421 8.23 0.00 0.00 5.87
738 739 3.522731 CTCCTCTCCACTCCCGCG 61.523 72.222 0.00 0.00 0.00 6.46
739 740 3.844090 GCTCCTCTCCACTCCCGC 61.844 72.222 0.00 0.00 0.00 6.13
740 741 3.151022 GGCTCCTCTCCACTCCCG 61.151 72.222 0.00 0.00 0.00 5.14
741 742 0.032017 TAAGGCTCCTCTCCACTCCC 60.032 60.000 0.00 0.00 0.00 4.30
742 743 1.342574 ACTAAGGCTCCTCTCCACTCC 60.343 57.143 0.00 0.00 0.00 3.85
743 744 1.754226 CACTAAGGCTCCTCTCCACTC 59.246 57.143 0.00 0.00 0.00 3.51
744 745 1.621072 CCACTAAGGCTCCTCTCCACT 60.621 57.143 0.00 0.00 0.00 4.00
745 746 0.827368 CCACTAAGGCTCCTCTCCAC 59.173 60.000 0.00 0.00 0.00 4.02
746 747 0.413832 ACCACTAAGGCTCCTCTCCA 59.586 55.000 0.00 0.00 43.14 3.86
747 748 1.574263 AACCACTAAGGCTCCTCTCC 58.426 55.000 0.00 0.00 43.14 3.71
748 749 3.704800 AAAACCACTAAGGCTCCTCTC 57.295 47.619 0.00 0.00 43.14 3.20
749 750 5.578157 TTAAAAACCACTAAGGCTCCTCT 57.422 39.130 0.00 0.00 43.14 3.69
750 751 6.444633 GTTTTAAAAACCACTAAGGCTCCTC 58.555 40.000 1.31 0.00 43.14 3.71
751 752 5.009310 CGTTTTAAAAACCACTAAGGCTCCT 59.991 40.000 1.31 0.00 43.14 3.69
752 753 5.217393 CGTTTTAAAAACCACTAAGGCTCC 58.783 41.667 1.31 0.00 43.14 4.70
753 754 5.008911 TCCGTTTTAAAAACCACTAAGGCTC 59.991 40.000 1.31 0.00 43.14 4.70
754 755 4.888823 TCCGTTTTAAAAACCACTAAGGCT 59.111 37.500 1.31 0.00 43.14 4.58
755 756 4.977963 GTCCGTTTTAAAAACCACTAAGGC 59.022 41.667 1.31 0.00 43.14 4.35
756 757 5.300034 AGGTCCGTTTTAAAAACCACTAAGG 59.700 40.000 18.20 2.26 45.67 2.69
872 1114 6.975772 TGTTTTTCTTATCGTTTTGGAAGGTG 59.024 34.615 0.00 0.00 0.00 4.00
963 1207 4.532314 GGTCTCCCGGTTTATATACAGG 57.468 50.000 0.00 5.68 33.73 4.00
1023 1269 1.809619 TTCGCTCTTGGGATTCGCG 60.810 57.895 0.00 0.00 44.63 5.87
1068 1314 0.037303 AGCATCTTGTCCTGTGTGGG 59.963 55.000 0.00 0.00 36.20 4.61
1357 1618 1.139095 CAGGAGCCGTCGTAGGAAC 59.861 63.158 3.23 0.00 0.00 3.62
1358 1619 2.707849 GCAGGAGCCGTCGTAGGAA 61.708 63.158 3.23 0.00 33.58 3.36
1559 1880 4.415332 TCCTCGGCGCTGTCGAAC 62.415 66.667 17.37 0.00 39.77 3.95
1754 2084 0.168348 TCTTTCTCCGCTTCGACGAG 59.832 55.000 0.00 0.00 34.06 4.18
1944 2275 9.567776 TTCAACACATGAAGGAAGAACTAATAA 57.432 29.630 0.00 0.00 43.08 1.40
1970 2309 1.371558 GCTCTGTTTCTCCGTGGGT 59.628 57.895 0.00 0.00 0.00 4.51
1975 2314 2.964740 TCTTGATGCTCTGTTTCTCCG 58.035 47.619 0.00 0.00 0.00 4.63
1980 2319 5.742063 TGATCTCATCTTGATGCTCTGTTT 58.258 37.500 5.78 0.00 0.00 2.83
2066 2406 3.368495 GGAACCACACAAATTTCACGAC 58.632 45.455 0.00 0.00 0.00 4.34
2068 2408 2.223386 ACGGAACCACACAAATTTCACG 60.223 45.455 0.00 0.00 0.00 4.35
2107 2449 0.884704 CTGTGCCAACGCCACTAACT 60.885 55.000 0.00 0.00 0.00 2.24
2138 2480 0.449388 GCTTCCAGAATTCCACTGCG 59.551 55.000 0.65 0.00 34.47 5.18
2149 2491 1.768275 TCTCACAAACCAGCTTCCAGA 59.232 47.619 0.00 0.00 0.00 3.86
2151 2493 1.202806 CCTCTCACAAACCAGCTTCCA 60.203 52.381 0.00 0.00 0.00 3.53
2194 2536 1.622811 AGAGGAGAAGGTCTGTGCAAG 59.377 52.381 0.00 0.00 0.00 4.01
2252 2594 2.275318 GAACCACTCACTGATGCTAGC 58.725 52.381 8.10 8.10 0.00 3.42
2256 2610 2.191128 AAGGAACCACTCACTGATGC 57.809 50.000 0.00 0.00 0.00 3.91
2257 2611 3.743521 TGAAAGGAACCACTCACTGATG 58.256 45.455 0.00 0.00 0.00 3.07
2269 2623 5.007626 GGAAACCTGCAAATTTGAAAGGAAC 59.992 40.000 31.57 23.38 37.15 3.62
2422 3103 4.338879 CATCACCTCTCATCCCAGTTTTT 58.661 43.478 0.00 0.00 0.00 1.94
2456 3137 2.875933 CGTTGACAAAACCTTCAGGCTA 59.124 45.455 0.00 0.00 39.32 3.93
2562 3271 5.147162 GCAATGTAGTGTGTTTGCTTAGTC 58.853 41.667 0.00 0.00 40.90 2.59
2568 3277 3.490526 CCAAAGCAATGTAGTGTGTTTGC 59.509 43.478 0.00 0.00 43.64 3.68
2574 3283 1.256812 GGCCCAAAGCAATGTAGTGT 58.743 50.000 0.00 0.00 46.50 3.55
2575 3284 0.171007 CGGCCCAAAGCAATGTAGTG 59.829 55.000 0.00 0.00 46.50 2.74
2576 3285 0.251165 ACGGCCCAAAGCAATGTAGT 60.251 50.000 0.00 0.00 46.50 2.73
2577 3286 0.887933 AACGGCCCAAAGCAATGTAG 59.112 50.000 0.00 0.00 46.50 2.74
2578 3287 0.600557 CAACGGCCCAAAGCAATGTA 59.399 50.000 0.00 0.00 46.50 2.29
2627 3343 5.327616 TGATGATGCACCAACCTTTAATG 57.672 39.130 0.00 0.00 0.00 1.90
2655 3371 0.621082 CCTTTGTTCCCTCCCCTCTC 59.379 60.000 0.00 0.00 0.00 3.20
2656 3372 0.196118 TCCTTTGTTCCCTCCCCTCT 59.804 55.000 0.00 0.00 0.00 3.69
2661 3377 2.372172 TCTTGACTCCTTTGTTCCCTCC 59.628 50.000 0.00 0.00 0.00 4.30
2678 3394 3.445096 GGGGTGATCAAAAGGACATCTTG 59.555 47.826 0.00 0.00 35.55 3.02
2684 3400 1.354368 TCCAGGGGTGATCAAAAGGAC 59.646 52.381 0.00 0.00 0.00 3.85
2717 3433 9.362539 GTATCTCATTTCCTAGTCGTTTGTTTA 57.637 33.333 0.00 0.00 0.00 2.01
2718 3434 7.333672 GGTATCTCATTTCCTAGTCGTTTGTTT 59.666 37.037 0.00 0.00 0.00 2.83
2719 3435 6.817140 GGTATCTCATTTCCTAGTCGTTTGTT 59.183 38.462 0.00 0.00 0.00 2.83
2720 3436 6.154706 AGGTATCTCATTTCCTAGTCGTTTGT 59.845 38.462 0.00 0.00 0.00 2.83
2721 3437 6.574350 AGGTATCTCATTTCCTAGTCGTTTG 58.426 40.000 0.00 0.00 0.00 2.93
2722 3438 6.459848 CGAGGTATCTCATTTCCTAGTCGTTT 60.460 42.308 3.42 0.00 39.95 3.60
2723 3439 5.008811 CGAGGTATCTCATTTCCTAGTCGTT 59.991 44.000 3.42 0.00 39.95 3.85
2724 3440 4.515944 CGAGGTATCTCATTTCCTAGTCGT 59.484 45.833 3.42 0.00 39.95 4.34
2725 3441 4.515944 ACGAGGTATCTCATTTCCTAGTCG 59.484 45.833 3.42 0.00 39.95 4.18
2726 3442 5.764131 CACGAGGTATCTCATTTCCTAGTC 58.236 45.833 3.42 0.00 39.95 2.59
2727 3443 4.038162 GCACGAGGTATCTCATTTCCTAGT 59.962 45.833 3.42 0.00 39.95 2.57
2728 3444 4.279671 AGCACGAGGTATCTCATTTCCTAG 59.720 45.833 3.42 0.00 39.95 3.02
2729 3445 4.215908 AGCACGAGGTATCTCATTTCCTA 58.784 43.478 3.42 0.00 39.95 2.94
2730 3446 3.034635 AGCACGAGGTATCTCATTTCCT 58.965 45.455 3.42 0.00 39.95 3.36
2731 3447 3.460857 AGCACGAGGTATCTCATTTCC 57.539 47.619 3.42 0.00 39.95 3.13
2732 3448 5.635700 GGATAAGCACGAGGTATCTCATTTC 59.364 44.000 3.42 0.00 39.95 2.17
2733 3449 5.070446 TGGATAAGCACGAGGTATCTCATTT 59.930 40.000 3.42 0.00 39.95 2.32
2734 3450 4.588951 TGGATAAGCACGAGGTATCTCATT 59.411 41.667 3.42 0.00 39.95 2.57
2735 3451 4.152647 TGGATAAGCACGAGGTATCTCAT 58.847 43.478 3.42 0.00 39.95 2.90
2736 3452 3.562182 TGGATAAGCACGAGGTATCTCA 58.438 45.455 3.42 0.00 39.95 3.27
2737 3453 4.489810 CATGGATAAGCACGAGGTATCTC 58.510 47.826 0.00 0.00 36.69 2.75
2738 3454 3.259374 CCATGGATAAGCACGAGGTATCT 59.741 47.826 5.56 0.00 0.00 1.98
2739 3455 3.006967 ACCATGGATAAGCACGAGGTATC 59.993 47.826 21.47 0.00 0.00 2.24
2740 3456 2.972713 ACCATGGATAAGCACGAGGTAT 59.027 45.455 21.47 0.00 0.00 2.73
2741 3457 2.394632 ACCATGGATAAGCACGAGGTA 58.605 47.619 21.47 0.00 0.00 3.08
2742 3458 1.204146 ACCATGGATAAGCACGAGGT 58.796 50.000 21.47 0.00 0.00 3.85
2743 3459 2.332063 AACCATGGATAAGCACGAGG 57.668 50.000 21.47 0.00 0.00 4.63
2744 3460 5.123186 TGTTTTAACCATGGATAAGCACGAG 59.877 40.000 21.47 0.00 0.00 4.18
2745 3461 5.004448 TGTTTTAACCATGGATAAGCACGA 58.996 37.500 21.47 0.00 0.00 4.35
2746 3462 5.303747 TGTTTTAACCATGGATAAGCACG 57.696 39.130 21.47 0.00 0.00 5.34
2747 3463 6.035975 GCAATGTTTTAACCATGGATAAGCAC 59.964 38.462 21.47 16.89 0.00 4.40
2748 3464 6.070881 AGCAATGTTTTAACCATGGATAAGCA 60.071 34.615 21.47 18.61 0.00 3.91
2749 3465 6.340522 AGCAATGTTTTAACCATGGATAAGC 58.659 36.000 21.47 14.99 0.00 3.09
2769 3485 9.868277 CCATTTTGGTCTTACATAAATAAGCAA 57.132 29.630 0.00 0.00 32.99 3.91
2787 3503 7.645058 ATGTAAGACCATAAGACCATTTTGG 57.355 36.000 0.00 0.00 45.02 3.28
2791 3507 9.408648 CCTTAAATGTAAGACCATAAGACCATT 57.591 33.333 4.06 0.00 39.36 3.16
2792 3508 8.778059 TCCTTAAATGTAAGACCATAAGACCAT 58.222 33.333 4.06 0.00 39.36 3.55
2793 3509 8.044908 GTCCTTAAATGTAAGACCATAAGACCA 58.955 37.037 4.06 0.00 39.36 4.02
2794 3510 7.224167 CGTCCTTAAATGTAAGACCATAAGACC 59.776 40.741 4.06 0.00 39.36 3.85
2795 3511 7.977853 TCGTCCTTAAATGTAAGACCATAAGAC 59.022 37.037 4.06 0.97 39.36 3.01
2796 3512 8.070034 TCGTCCTTAAATGTAAGACCATAAGA 57.930 34.615 4.06 0.00 39.36 2.10
2797 3513 7.438459 CCTCGTCCTTAAATGTAAGACCATAAG 59.562 40.741 4.06 0.00 39.36 1.73
2798 3514 7.270047 CCTCGTCCTTAAATGTAAGACCATAA 58.730 38.462 4.06 0.00 39.36 1.90
2799 3515 6.183360 CCCTCGTCCTTAAATGTAAGACCATA 60.183 42.308 4.06 0.00 39.36 2.74
2800 3516 5.396436 CCCTCGTCCTTAAATGTAAGACCAT 60.396 44.000 4.06 0.00 39.36 3.55
2801 3517 4.081309 CCCTCGTCCTTAAATGTAAGACCA 60.081 45.833 4.06 0.00 39.36 4.02
2802 3518 4.161001 TCCCTCGTCCTTAAATGTAAGACC 59.839 45.833 4.06 0.00 39.36 3.85
2803 3519 5.334724 TCCCTCGTCCTTAAATGTAAGAC 57.665 43.478 4.06 0.66 39.36 3.01
2804 3520 4.404715 CCTCCCTCGTCCTTAAATGTAAGA 59.595 45.833 4.06 0.00 39.36 2.10
2805 3521 4.161754 ACCTCCCTCGTCCTTAAATGTAAG 59.838 45.833 0.00 0.00 37.12 2.34
2806 3522 4.098894 ACCTCCCTCGTCCTTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
2807 3523 3.716431 ACCTCCCTCGTCCTTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
2808 3524 2.547990 ACCTCCCTCGTCCTTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
2809 3525 4.748277 TTACCTCCCTCGTCCTTAAATG 57.252 45.455 0.00 0.00 0.00 2.32
2810 3526 5.970501 AATTACCTCCCTCGTCCTTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
2811 3527 6.669154 TCTTAATTACCTCCCTCGTCCTTAAA 59.331 38.462 0.00 0.00 0.00 1.52
2812 3528 6.197168 TCTTAATTACCTCCCTCGTCCTTAA 58.803 40.000 0.00 0.00 0.00 1.85
2813 3529 5.769835 TCTTAATTACCTCCCTCGTCCTTA 58.230 41.667 0.00 0.00 0.00 2.69
2814 3530 4.617593 TCTTAATTACCTCCCTCGTCCTT 58.382 43.478 0.00 0.00 0.00 3.36
2815 3531 4.261411 TCTTAATTACCTCCCTCGTCCT 57.739 45.455 0.00 0.00 0.00 3.85
2816 3532 5.349061 TTTCTTAATTACCTCCCTCGTCC 57.651 43.478 0.00 0.00 0.00 4.79
2817 3533 5.816258 CCTTTTCTTAATTACCTCCCTCGTC 59.184 44.000 0.00 0.00 0.00 4.20
2818 3534 5.486419 TCCTTTTCTTAATTACCTCCCTCGT 59.514 40.000 0.00 0.00 0.00 4.18
2819 3535 5.985911 TCCTTTTCTTAATTACCTCCCTCG 58.014 41.667 0.00 0.00 0.00 4.63
2820 3536 9.562408 CTATTCCTTTTCTTAATTACCTCCCTC 57.438 37.037 0.00 0.00 0.00 4.30
2821 3537 9.292751 TCTATTCCTTTTCTTAATTACCTCCCT 57.707 33.333 0.00 0.00 0.00 4.20
2822 3538 9.562408 CTCTATTCCTTTTCTTAATTACCTCCC 57.438 37.037 0.00 0.00 0.00 4.30
2833 3549 9.799106 TCTGAAATCAACTCTATTCCTTTTCTT 57.201 29.630 0.00 0.00 0.00 2.52
2834 3550 9.799106 TTCTGAAATCAACTCTATTCCTTTTCT 57.201 29.630 0.00 0.00 0.00 2.52
2836 3552 9.799106 TCTTCTGAAATCAACTCTATTCCTTTT 57.201 29.630 0.00 0.00 0.00 2.27
2837 3553 9.799106 TTCTTCTGAAATCAACTCTATTCCTTT 57.201 29.630 0.00 0.00 0.00 3.11
2838 3554 9.799106 TTTCTTCTGAAATCAACTCTATTCCTT 57.201 29.630 0.00 0.00 37.27 3.36
2839 3555 9.799106 TTTTCTTCTGAAATCAACTCTATTCCT 57.201 29.630 0.00 0.00 41.24 3.36
2867 3583 9.841295 TGTAACACAAACTAAACTCTATTCCTT 57.159 29.630 0.00 0.00 0.00 3.36
2868 3584 9.841295 TTGTAACACAAACTAAACTCTATTCCT 57.159 29.630 0.00 0.00 34.76 3.36
2869 3585 9.874215 GTTGTAACACAAACTAAACTCTATTCC 57.126 33.333 0.00 0.00 40.15 3.01
2887 3603 1.292061 GCACTGTCCGTGTTGTAACA 58.708 50.000 0.00 0.00 45.57 2.41
2888 3604 0.584876 GGCACTGTCCGTGTTGTAAC 59.415 55.000 0.00 0.00 45.57 2.50
2889 3605 0.178301 TGGCACTGTCCGTGTTGTAA 59.822 50.000 0.00 0.00 45.57 2.41
2890 3606 0.531090 GTGGCACTGTCCGTGTTGTA 60.531 55.000 11.13 0.00 45.57 2.41
2891 3607 1.817941 GTGGCACTGTCCGTGTTGT 60.818 57.895 11.13 0.00 45.57 3.32
2892 3608 1.372838 TTGTGGCACTGTCCGTGTTG 61.373 55.000 19.83 0.00 45.57 3.33
2893 3609 1.078072 TTGTGGCACTGTCCGTGTT 60.078 52.632 19.83 0.00 45.57 3.32
2894 3610 1.817941 GTTGTGGCACTGTCCGTGT 60.818 57.895 19.83 0.00 45.57 4.49
2895 3611 1.817520 TGTTGTGGCACTGTCCGTG 60.818 57.895 19.83 0.00 46.58 4.94
2896 3612 1.817941 GTGTTGTGGCACTGTCCGT 60.818 57.895 19.83 0.00 36.51 4.69
2897 3613 2.881266 CGTGTTGTGGCACTGTCCG 61.881 63.158 19.83 11.93 37.24 4.79
2898 3614 3.022287 CGTGTTGTGGCACTGTCC 58.978 61.111 19.83 4.46 37.24 4.02
2899 3615 2.327940 GCGTGTTGTGGCACTGTC 59.672 61.111 19.83 9.44 37.24 3.51
2900 3616 3.209097 GGCGTGTTGTGGCACTGT 61.209 61.111 19.83 0.00 37.24 3.55
2901 3617 4.312231 CGGCGTGTTGTGGCACTG 62.312 66.667 19.83 4.75 37.24 3.66
2902 3618 4.539083 TCGGCGTGTTGTGGCACT 62.539 61.111 19.83 0.00 37.24 4.40
2903 3619 3.578272 TTCGGCGTGTTGTGGCAC 61.578 61.111 11.55 11.55 36.12 5.01
2904 3620 3.578272 GTTCGGCGTGTTGTGGCA 61.578 61.111 6.85 0.00 0.00 4.92
2905 3621 2.982038 CTTGTTCGGCGTGTTGTGGC 62.982 60.000 6.85 0.00 0.00 5.01
2906 3622 1.010125 CTTGTTCGGCGTGTTGTGG 60.010 57.895 6.85 0.00 0.00 4.17
2907 3623 0.931702 TACTTGTTCGGCGTGTTGTG 59.068 50.000 6.85 0.00 0.00 3.33
2908 3624 0.932399 GTACTTGTTCGGCGTGTTGT 59.068 50.000 6.85 3.78 0.00 3.32
2909 3625 0.931702 TGTACTTGTTCGGCGTGTTG 59.068 50.000 6.85 0.00 0.00 3.33
2910 3626 1.214367 CTGTACTTGTTCGGCGTGTT 58.786 50.000 6.85 0.00 0.00 3.32
2911 3627 0.103572 ACTGTACTTGTTCGGCGTGT 59.896 50.000 6.85 2.33 0.00 4.49
2912 3628 1.983605 CTACTGTACTTGTTCGGCGTG 59.016 52.381 6.85 0.00 0.00 5.34
2913 3629 1.610522 ACTACTGTACTTGTTCGGCGT 59.389 47.619 6.85 0.00 0.00 5.68
2914 3630 2.342910 ACTACTGTACTTGTTCGGCG 57.657 50.000 0.00 0.00 0.00 6.46
2915 3631 7.080724 GGTATATACTACTGTACTTGTTCGGC 58.919 42.308 12.54 0.00 0.00 5.54
2916 3632 8.158169 TGGTATATACTACTGTACTTGTTCGG 57.842 38.462 12.54 0.00 0.00 4.30
2917 3633 9.661187 CTTGGTATATACTACTGTACTTGTTCG 57.339 37.037 12.54 0.00 0.00 3.95
2931 3647 8.989131 ACCACTGAAATGTACTTGGTATATACT 58.011 33.333 12.54 0.00 35.55 2.12
2935 3651 9.826574 GATTACCACTGAAATGTACTTGGTATA 57.173 33.333 0.00 0.00 38.93 1.47
2936 3652 7.773690 GGATTACCACTGAAATGTACTTGGTAT 59.226 37.037 0.00 0.00 38.93 2.73
2937 3653 7.107542 GGATTACCACTGAAATGTACTTGGTA 58.892 38.462 0.00 0.00 38.34 3.25
2938 3654 5.944007 GGATTACCACTGAAATGTACTTGGT 59.056 40.000 0.00 0.00 40.47 3.67
2939 3655 5.064707 CGGATTACCACTGAAATGTACTTGG 59.935 44.000 0.00 0.00 35.59 3.61
2940 3656 5.642063 ACGGATTACCACTGAAATGTACTTG 59.358 40.000 0.00 0.00 35.59 3.16
2941 3657 5.801380 ACGGATTACCACTGAAATGTACTT 58.199 37.500 0.00 0.00 35.59 2.24
2942 3658 5.416271 ACGGATTACCACTGAAATGTACT 57.584 39.130 0.00 0.00 35.59 2.73
2943 3659 6.982141 TCATACGGATTACCACTGAAATGTAC 59.018 38.462 0.00 0.00 35.59 2.90
2944 3660 7.114866 TCATACGGATTACCACTGAAATGTA 57.885 36.000 0.00 0.00 35.59 2.29
2945 3661 5.984725 TCATACGGATTACCACTGAAATGT 58.015 37.500 0.00 0.00 35.59 2.71
2946 3662 6.918892 TTCATACGGATTACCACTGAAATG 57.081 37.500 0.00 0.00 35.59 2.32
2947 3663 8.405531 CAAATTCATACGGATTACCACTGAAAT 58.594 33.333 0.00 0.00 34.00 2.17
2948 3664 7.148154 CCAAATTCATACGGATTACCACTGAAA 60.148 37.037 0.00 0.00 34.00 2.69
2949 3665 6.317642 CCAAATTCATACGGATTACCACTGAA 59.682 38.462 0.00 0.00 34.44 3.02
2950 3666 5.820423 CCAAATTCATACGGATTACCACTGA 59.180 40.000 0.00 0.00 35.59 3.41
2951 3667 5.588648 ACCAAATTCATACGGATTACCACTG 59.411 40.000 0.00 0.00 35.59 3.66
2952 3668 5.751586 ACCAAATTCATACGGATTACCACT 58.248 37.500 0.00 0.00 35.59 4.00
2953 3669 6.764560 ACTACCAAATTCATACGGATTACCAC 59.235 38.462 0.00 0.00 35.59 4.16
2954 3670 6.891388 ACTACCAAATTCATACGGATTACCA 58.109 36.000 0.00 0.00 35.59 3.25
2960 3676 9.887629 TGTTTTATACTACCAAATTCATACGGA 57.112 29.630 0.00 0.00 0.00 4.69
2966 3682 9.535170 TCCCATTGTTTTATACTACCAAATTCA 57.465 29.630 0.00 0.00 0.00 2.57
2971 3687 9.535170 TGAATTCCCATTGTTTTATACTACCAA 57.465 29.630 2.27 0.00 0.00 3.67
2972 3688 9.707957 ATGAATTCCCATTGTTTTATACTACCA 57.292 29.630 2.27 0.00 0.00 3.25
2974 3690 9.878599 CGATGAATTCCCATTGTTTTATACTAC 57.121 33.333 2.27 0.00 0.00 2.73
2975 3691 9.621629 ACGATGAATTCCCATTGTTTTATACTA 57.378 29.630 2.27 0.00 37.79 1.82
2976 3692 8.519799 ACGATGAATTCCCATTGTTTTATACT 57.480 30.769 2.27 0.00 37.79 2.12
2977 3693 7.586300 CGACGATGAATTCCCATTGTTTTATAC 59.414 37.037 2.27 0.00 40.31 1.47
2978 3694 7.281324 ACGACGATGAATTCCCATTGTTTTATA 59.719 33.333 0.00 0.00 40.31 0.98
2979 3695 6.094881 ACGACGATGAATTCCCATTGTTTTAT 59.905 34.615 0.00 0.00 40.31 1.40
2980 3696 5.413213 ACGACGATGAATTCCCATTGTTTTA 59.587 36.000 0.00 0.00 40.31 1.52
2981 3697 4.217550 ACGACGATGAATTCCCATTGTTTT 59.782 37.500 0.00 0.00 40.31 2.43
2982 3698 3.756434 ACGACGATGAATTCCCATTGTTT 59.244 39.130 0.00 0.00 40.31 2.83
2983 3699 3.343617 ACGACGATGAATTCCCATTGTT 58.656 40.909 0.00 0.00 40.31 2.83
2984 3700 2.936498 GACGACGATGAATTCCCATTGT 59.064 45.455 0.00 1.35 42.28 2.71
2985 3701 2.935849 TGACGACGATGAATTCCCATTG 59.064 45.455 0.00 0.00 34.77 2.82
2986 3702 3.260475 TGACGACGATGAATTCCCATT 57.740 42.857 0.00 0.00 0.00 3.16
2987 3703 2.979814 TGACGACGATGAATTCCCAT 57.020 45.000 0.00 0.00 0.00 4.00
2988 3704 2.798145 CGATGACGACGATGAATTCCCA 60.798 50.000 0.00 0.00 42.66 4.37
2989 3705 1.787155 CGATGACGACGATGAATTCCC 59.213 52.381 0.00 0.00 42.66 3.97
2990 3706 1.190323 GCGATGACGACGATGAATTCC 59.810 52.381 0.00 0.00 42.66 3.01
2991 3707 1.190323 GGCGATGACGACGATGAATTC 59.810 52.381 0.00 0.00 42.66 2.17
2992 3708 1.209128 GGCGATGACGACGATGAATT 58.791 50.000 0.00 0.00 42.66 2.17
2993 3709 2.886859 GGCGATGACGACGATGAAT 58.113 52.632 0.00 0.00 42.66 2.57
2994 3710 4.395080 GGCGATGACGACGATGAA 57.605 55.556 0.00 0.00 42.66 2.57
3003 3719 2.032185 CTTAAACCGGCGGCGATGAC 62.032 60.000 34.49 0.00 0.00 3.06
3004 3720 1.812093 CTTAAACCGGCGGCGATGA 60.812 57.895 34.49 11.74 0.00 2.92
3005 3721 2.707039 CTTAAACCGGCGGCGATG 59.293 61.111 34.49 19.65 0.00 3.84
3006 3722 2.512974 CCTTAAACCGGCGGCGAT 60.513 61.111 34.49 14.97 0.00 4.58
3007 3723 3.652539 CTCCTTAAACCGGCGGCGA 62.653 63.158 34.49 10.16 0.00 5.54
3008 3724 3.192922 CTCCTTAAACCGGCGGCG 61.193 66.667 28.71 26.12 0.00 6.46
3009 3725 2.046604 ACTCCTTAAACCGGCGGC 60.047 61.111 28.71 0.00 0.00 6.53
3010 3726 0.107848 ATCACTCCTTAAACCGGCGG 60.108 55.000 27.06 27.06 0.00 6.13
3011 3727 1.006832 CATCACTCCTTAAACCGGCG 58.993 55.000 0.00 0.00 0.00 6.46
3012 3728 0.733150 GCATCACTCCTTAAACCGGC 59.267 55.000 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.