Multiple sequence alignment - TraesCS6D01G225200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G225200 chr6D 100.000 9958 0 0 1 9958 317016308 317006351 0.000000e+00 18390.0
1 TraesCS6D01G225200 chr6D 97.000 200 4 2 6395 6593 317009716 317009914 1.600000e-87 335.0
2 TraesCS6D01G225200 chr6D 80.586 273 32 10 8107 8359 191904001 191904272 3.670000e-44 191.0
3 TraesCS6D01G225200 chr6D 95.238 63 1 1 4791 4851 86643301 86643239 2.290000e-16 99.0
4 TraesCS6D01G225200 chr6A 94.680 5564 181 41 910 6405 454657966 454652450 0.000000e+00 8528.0
5 TraesCS6D01G225200 chr6A 96.108 2364 56 11 6597 8956 454652001 454649670 0.000000e+00 3823.0
6 TraesCS6D01G225200 chr6A 90.990 1010 45 18 8954 9958 454649589 454648621 0.000000e+00 1319.0
7 TraesCS6D01G225200 chr6A 94.353 425 22 2 400 824 360479293 360478871 0.000000e+00 651.0
8 TraesCS6D01G225200 chr6A 87.438 406 50 1 4 409 568067001 568066597 5.450000e-127 466.0
9 TraesCS6D01G225200 chr6A 87.105 411 51 2 4 413 320656952 320656543 1.960000e-126 464.0
10 TraesCS6D01G225200 chr6B 96.261 2594 69 15 6597 9182 507589798 507592371 0.000000e+00 4228.0
11 TraesCS6D01G225200 chr6B 94.203 2139 83 15 910 3016 507576149 507578278 0.000000e+00 3225.0
12 TraesCS6D01G225200 chr6B 93.855 1660 56 13 3161 4790 507578571 507580214 0.000000e+00 2459.0
13 TraesCS6D01G225200 chr6B 95.109 777 25 3 9190 9958 507592476 507593247 0.000000e+00 1212.0
14 TraesCS6D01G225200 chr6B 88.545 873 52 23 4932 5778 507587778 507588628 0.000000e+00 1014.0
15 TraesCS6D01G225200 chr6B 90.572 594 32 10 5718 6300 507588626 507589206 0.000000e+00 765.0
16 TraesCS6D01G225200 chr6B 87.931 406 48 1 4 409 560644997 560645401 2.520000e-130 477.0
17 TraesCS6D01G225200 chr6B 87.685 406 49 1 4 409 164824350 164824754 1.170000e-128 472.0
18 TraesCS6D01G225200 chr6B 92.157 153 11 1 3012 3164 507578308 507578459 2.180000e-51 215.0
19 TraesCS6D01G225200 chr6B 93.651 63 4 0 4792 4854 504603155 504603093 2.960000e-15 95.3
20 TraesCS6D01G225200 chr6B 100.000 36 0 0 4849 4884 507580215 507580250 6.450000e-07 67.6
21 TraesCS6D01G225200 chr6B 89.796 49 5 0 6304 6352 507589314 507589362 8.350000e-06 63.9
22 TraesCS6D01G225200 chr3B 93.591 827 44 5 5 824 705295991 705295167 0.000000e+00 1225.0
23 TraesCS6D01G225200 chr3B 87.778 90 9 2 7464 7551 316755205 316755116 4.920000e-18 104.0
24 TraesCS6D01G225200 chr3B 90.141 71 7 0 7464 7534 595997212 595997142 1.060000e-14 93.5
25 TraesCS6D01G225200 chr3B 100.000 30 0 0 5246 5275 75993798 75993827 1.000000e-03 56.5
26 TraesCS6D01G225200 chr3D 92.331 652 26 6 2 653 574527980 574527353 0.000000e+00 905.0
27 TraesCS6D01G225200 chr3D 94.366 426 22 2 400 825 415720174 415719751 0.000000e+00 652.0
28 TraesCS6D01G225200 chr3D 92.537 67 1 2 4792 4857 435451314 435451251 1.060000e-14 93.5
29 TraesCS6D01G225200 chr3D 100.000 30 0 0 5246 5275 48346772 48346801 1.000000e-03 56.5
30 TraesCS6D01G225200 chr2D 94.023 435 23 3 400 834 375039613 375040044 0.000000e+00 656.0
31 TraesCS6D01G225200 chr2A 94.366 426 20 4 400 825 508090827 508091248 0.000000e+00 651.0
32 TraesCS6D01G225200 chr2A 82.800 500 78 6 9315 9810 642911210 642910715 3.300000e-119 440.0
33 TraesCS6D01G225200 chr5A 94.326 423 21 3 400 822 67331244 67331663 0.000000e+00 645.0
34 TraesCS6D01G225200 chr5A 93.677 427 24 2 400 826 558326121 558325698 3.920000e-178 636.0
35 TraesCS6D01G225200 chr5A 93.647 425 24 3 400 824 139480057 139479636 5.070000e-177 632.0
36 TraesCS6D01G225200 chr5A 86.313 358 45 4 9472 9827 632837188 632836833 4.360000e-103 387.0
37 TraesCS6D01G225200 chr7D 93.662 426 25 2 400 825 511143840 511144263 3.920000e-178 636.0
38 TraesCS6D01G225200 chr7D 85.556 90 11 2 7464 7551 418729034 418728945 1.060000e-14 93.5
39 TraesCS6D01G225200 chr4A 92.199 423 26 6 6 422 716519250 716519671 8.610000e-165 592.0
40 TraesCS6D01G225200 chr4A 87.961 407 47 2 4 409 374566971 374567376 7.000000e-131 479.0
41 TraesCS6D01G225200 chr4A 87.805 410 49 1 2 410 727206115 727206524 7.000000e-131 479.0
42 TraesCS6D01G225200 chr4A 79.487 273 36 11 8107 8359 263738883 263739155 1.030000e-39 176.0
43 TraesCS6D01G225200 chr4A 95.455 66 2 1 4790 4854 741472552 741472617 4.920000e-18 104.0
44 TraesCS6D01G225200 chr4A 81.319 91 17 0 8443 8533 363103856 363103946 3.860000e-09 75.0
45 TraesCS6D01G225200 chr1B 86.480 429 48 8 9427 9847 416822160 416822586 7.050000e-126 462.0
46 TraesCS6D01G225200 chr1B 82.051 273 29 7 8107 8359 100145904 100146176 2.180000e-51 215.0
47 TraesCS6D01G225200 chr1B 86.735 98 13 0 8125 8222 381315210 381315113 1.060000e-19 110.0
48 TraesCS6D01G225200 chr1A 86.480 429 48 8 9427 9847 387028791 387029217 7.050000e-126 462.0
49 TraesCS6D01G225200 chr1D 85.781 429 51 8 9427 9847 307832365 307832791 7.100000e-121 446.0
50 TraesCS6D01G225200 chr1D 80.488 369 50 12 5212 5562 434081636 434081272 7.670000e-66 263.0
51 TraesCS6D01G225200 chr1D 93.750 64 3 1 4789 4851 404066315 404066378 2.960000e-15 95.3
52 TraesCS6D01G225200 chr1D 90.278 72 5 2 4792 4862 363509571 363509501 1.060000e-14 93.5
53 TraesCS6D01G225200 chr5D 87.465 359 39 6 9472 9827 505216343 505215988 9.310000e-110 409.0
54 TraesCS6D01G225200 chr5D 96.610 59 2 0 4793 4851 469062748 469062806 2.290000e-16 99.0
55 TraesCS6D01G225200 chr5D 85.714 63 7 2 5212 5273 439665686 439665747 2.320000e-06 65.8
56 TraesCS6D01G225200 chr5B 87.430 358 41 4 9472 9827 635195279 635194924 9.310000e-110 409.0
57 TraesCS6D01G225200 chr7A 78.832 274 37 9 8107 8359 276741666 276741939 2.230000e-36 165.0
58 TraesCS6D01G225200 chr4D 93.750 64 3 1 4792 4855 6594659 6594597 2.960000e-15 95.3
59 TraesCS6D01G225200 chr4D 81.319 91 17 0 8443 8533 233096696 233096786 3.860000e-09 75.0
60 TraesCS6D01G225200 chr4B 81.319 91 17 0 8443 8533 232108092 232108182 3.860000e-09 75.0
61 TraesCS6D01G225200 chr3A 100.000 28 0 0 5248 5275 60443794 60443767 1.800000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G225200 chr6D 317006351 317016308 9957 True 18390.000000 18390 100.00000 1 9958 1 chr6D.!!$R2 9957
1 TraesCS6D01G225200 chr6A 454648621 454657966 9345 True 4556.666667 8528 93.92600 910 9958 3 chr6A.!!$R4 9048
2 TraesCS6D01G225200 chr6B 507576149 507580250 4101 False 1491.650000 3225 95.05375 910 4884 4 chr6B.!!$F3 3974
3 TraesCS6D01G225200 chr6B 507587778 507593247 5469 False 1456.580000 4228 92.05660 4932 9958 5 chr6B.!!$F4 5026
4 TraesCS6D01G225200 chr3B 705295167 705295991 824 True 1225.000000 1225 93.59100 5 824 1 chr3B.!!$R3 819
5 TraesCS6D01G225200 chr3D 574527353 574527980 627 True 905.000000 905 92.33100 2 653 1 chr3D.!!$R3 651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
881 888 0.265254 AGCCCCCTACTCCTTACTCC 59.735 60.000 0.00 0.0 0.00 3.85 F
972 985 0.608582 CCGCCGCTATCCTACCTACT 60.609 60.000 0.00 0.0 0.00 2.57 F
2040 2086 1.031571 AGTCGCCCGTATCGGTACAA 61.032 55.000 6.65 0.0 46.80 2.41 F
2514 2561 1.615392 GAAAGCAAGTGGCCAGTCAAT 59.385 47.619 15.03 0.0 46.50 2.57 F
3245 3442 2.203294 ACGTTTGGGTGAGGGTGC 60.203 61.111 0.00 0.0 0.00 5.01 F
4556 4776 2.092646 TGTTACACAGTCCCTTGTTGCT 60.093 45.455 0.00 0.0 0.00 3.91 F
6094 6438 0.245539 CACAACGGGACACTACGGAT 59.754 55.000 0.00 0.0 0.00 4.18 F
6513 6963 0.251354 CCCACACAGAGACAGATGGG 59.749 60.000 0.00 0.0 40.87 4.00 F
8296 9005 0.392461 AGTGTGTGTTGGCGACTTGT 60.392 50.000 6.41 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2725 2772 0.250467 TGGAGCCTGTCAAACTCTGC 60.250 55.000 2.69 0.0 0.00 4.26 R
3199 3396 7.713507 CCCTAACTAATGTTATCGGTCAAATGA 59.286 37.037 0.00 0.0 37.92 2.57 R
3245 3442 1.995484 CACAATCTATCATAGCCGCCG 59.005 52.381 0.00 0.0 0.00 6.46 R
4556 4776 5.988310 AATGCACTGAGATTTGGAAATCA 57.012 34.783 13.30 0.0 45.59 2.57 R
5062 5289 0.667993 AACACCTTGTTGCACCATCG 59.332 50.000 0.00 0.0 39.45 3.84 R
6497 6947 0.178891 ACCCCCATCTGTCTCTGTGT 60.179 55.000 0.00 0.0 0.00 3.72 R
7537 8246 1.617850 TGCCACAAAATTCTTGCGGAT 59.382 42.857 9.96 0.0 0.00 4.18 R
8429 9142 1.774110 TCTTTGTTGGGCTGCAAGAA 58.226 45.000 0.50 0.0 34.07 2.52 R
9874 10783 2.249413 CTGTTCGGCCAGAGGAGCAT 62.249 60.000 2.24 0.0 34.23 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.792741 CTCAATATGAAGAGATCCCCTCAC 58.207 45.833 0.00 0.00 44.40 3.51
49 50 4.639755 CCTCACATACAATAACCATGCACA 59.360 41.667 0.00 0.00 0.00 4.57
71 72 1.518903 GCAGACTGGTTGGTGCCTTC 61.519 60.000 4.26 0.00 0.00 3.46
81 82 2.345991 GTGCCTTCACCTACCGCA 59.654 61.111 0.00 0.00 37.24 5.69
98 99 1.823169 GCACTGGAGGTCGTGGGTTA 61.823 60.000 0.00 0.00 0.00 2.85
572 577 3.181488 TGCAATATCTTTTGGGCATCACG 60.181 43.478 0.00 0.00 0.00 4.35
595 600 5.512788 CGGAGAAACAACATCAAATGCATAC 59.487 40.000 0.00 0.00 0.00 2.39
675 681 9.515020 TTTTGAGTACACTTCAAAAATCATCAC 57.485 29.630 15.35 0.00 39.45 3.06
676 682 7.800155 TGAGTACACTTCAAAAATCATCACA 57.200 32.000 0.00 0.00 0.00 3.58
677 683 7.639039 TGAGTACACTTCAAAAATCATCACAC 58.361 34.615 0.00 0.00 0.00 3.82
678 684 7.281999 TGAGTACACTTCAAAAATCATCACACA 59.718 33.333 0.00 0.00 0.00 3.72
681 687 9.248291 GTACACTTCAAAAATCATCACACATTT 57.752 29.630 0.00 0.00 0.00 2.32
683 689 9.985730 ACACTTCAAAAATCATCACACATTTAT 57.014 25.926 0.00 0.00 0.00 1.40
721 728 3.605056 CACTTATCATGTTGCTTGTTGCG 59.395 43.478 0.00 0.00 46.63 4.85
735 742 1.068402 TGTTGCGTGGCATCATGAAAG 60.068 47.619 0.00 0.00 38.76 2.62
743 750 8.669685 TGCGTGGCATCATGAAAGATTTCAAA 62.670 38.462 11.72 4.53 41.18 2.69
766 773 3.311322 GGATTTGTTGTGTCGTCAACTGA 59.689 43.478 16.47 9.17 45.26 3.41
780 787 2.567169 TCAACTGAGTGTATGAGGGGTG 59.433 50.000 0.00 0.00 0.00 4.61
824 831 1.535462 GCACGGACATGTTTGCTAGTT 59.465 47.619 16.62 0.00 32.00 2.24
825 832 2.739913 GCACGGACATGTTTGCTAGTTA 59.260 45.455 16.62 0.00 32.00 2.24
826 833 3.374058 GCACGGACATGTTTGCTAGTTAT 59.626 43.478 16.62 0.00 32.00 1.89
827 834 4.142687 GCACGGACATGTTTGCTAGTTATT 60.143 41.667 16.62 0.00 32.00 1.40
828 835 5.064198 GCACGGACATGTTTGCTAGTTATTA 59.936 40.000 16.62 0.00 32.00 0.98
829 836 6.402766 GCACGGACATGTTTGCTAGTTATTAA 60.403 38.462 16.62 0.00 32.00 1.40
830 837 7.678690 GCACGGACATGTTTGCTAGTTATTAAT 60.679 37.037 16.62 0.00 32.00 1.40
831 838 8.822855 CACGGACATGTTTGCTAGTTATTAATA 58.177 33.333 0.00 0.00 0.00 0.98
832 839 9.386010 ACGGACATGTTTGCTAGTTATTAATAA 57.614 29.630 0.00 3.71 0.00 1.40
839 846 9.681062 TGTTTGCTAGTTATTAATAAAGCTCCT 57.319 29.630 23.07 13.56 30.96 3.69
849 856 6.657836 TTAATAAAGCTCCTAGTTCGTTGC 57.342 37.500 0.00 0.00 0.00 4.17
850 857 2.543777 AAAGCTCCTAGTTCGTTGCA 57.456 45.000 0.00 0.00 0.00 4.08
851 858 2.543777 AAGCTCCTAGTTCGTTGCAA 57.456 45.000 0.00 0.00 0.00 4.08
852 859 2.543777 AGCTCCTAGTTCGTTGCAAA 57.456 45.000 0.00 0.00 0.00 3.68
853 860 2.846193 AGCTCCTAGTTCGTTGCAAAA 58.154 42.857 0.00 0.00 0.00 2.44
854 861 3.211045 AGCTCCTAGTTCGTTGCAAAAA 58.789 40.909 0.00 0.00 0.00 1.94
875 882 1.456919 AAAAACAGCCCCCTACTCCT 58.543 50.000 0.00 0.00 0.00 3.69
876 883 1.456919 AAAACAGCCCCCTACTCCTT 58.543 50.000 0.00 0.00 0.00 3.36
877 884 2.354261 AAACAGCCCCCTACTCCTTA 57.646 50.000 0.00 0.00 0.00 2.69
878 885 1.581223 AACAGCCCCCTACTCCTTAC 58.419 55.000 0.00 0.00 0.00 2.34
879 886 0.717196 ACAGCCCCCTACTCCTTACT 59.283 55.000 0.00 0.00 0.00 2.24
880 887 1.343176 ACAGCCCCCTACTCCTTACTC 60.343 57.143 0.00 0.00 0.00 2.59
881 888 0.265254 AGCCCCCTACTCCTTACTCC 59.735 60.000 0.00 0.00 0.00 3.85
882 889 0.763604 GCCCCCTACTCCTTACTCCC 60.764 65.000 0.00 0.00 0.00 4.30
883 890 0.942721 CCCCCTACTCCTTACTCCCT 59.057 60.000 0.00 0.00 0.00 4.20
884 891 2.150410 CCCCCTACTCCTTACTCCCTA 58.850 57.143 0.00 0.00 0.00 3.53
885 892 2.728572 CCCCCTACTCCTTACTCCCTAT 59.271 54.545 0.00 0.00 0.00 2.57
886 893 3.245694 CCCCCTACTCCTTACTCCCTATC 60.246 56.522 0.00 0.00 0.00 2.08
887 894 3.245694 CCCCTACTCCTTACTCCCTATCC 60.246 56.522 0.00 0.00 0.00 2.59
888 895 3.561744 CCCTACTCCTTACTCCCTATCCG 60.562 56.522 0.00 0.00 0.00 4.18
889 896 3.074242 CCTACTCCTTACTCCCTATCCGT 59.926 52.174 0.00 0.00 0.00 4.69
890 897 3.684408 ACTCCTTACTCCCTATCCGTT 57.316 47.619 0.00 0.00 0.00 4.44
891 898 3.991683 ACTCCTTACTCCCTATCCGTTT 58.008 45.455 0.00 0.00 0.00 3.60
892 899 5.134725 ACTCCTTACTCCCTATCCGTTTA 57.865 43.478 0.00 0.00 0.00 2.01
893 900 5.713807 ACTCCTTACTCCCTATCCGTTTAT 58.286 41.667 0.00 0.00 0.00 1.40
894 901 5.774184 ACTCCTTACTCCCTATCCGTTTATC 59.226 44.000 0.00 0.00 0.00 1.75
895 902 4.763793 TCCTTACTCCCTATCCGTTTATCG 59.236 45.833 0.00 0.00 39.52 2.92
896 903 4.483311 CTTACTCCCTATCCGTTTATCGC 58.517 47.826 0.00 0.00 38.35 4.58
897 904 1.617357 ACTCCCTATCCGTTTATCGCC 59.383 52.381 0.00 0.00 38.35 5.54
898 905 1.893801 CTCCCTATCCGTTTATCGCCT 59.106 52.381 0.00 0.00 38.35 5.52
899 906 2.299297 CTCCCTATCCGTTTATCGCCTT 59.701 50.000 0.00 0.00 38.35 4.35
900 907 2.701951 TCCCTATCCGTTTATCGCCTTT 59.298 45.455 0.00 0.00 38.35 3.11
901 908 3.135167 TCCCTATCCGTTTATCGCCTTTT 59.865 43.478 0.00 0.00 38.35 2.27
902 909 3.497262 CCCTATCCGTTTATCGCCTTTTC 59.503 47.826 0.00 0.00 38.35 2.29
903 910 3.497262 CCTATCCGTTTATCGCCTTTTCC 59.503 47.826 0.00 0.00 38.35 3.13
904 911 2.476126 TCCGTTTATCGCCTTTTCCA 57.524 45.000 0.00 0.00 38.35 3.53
905 912 2.780714 TCCGTTTATCGCCTTTTCCAA 58.219 42.857 0.00 0.00 38.35 3.53
906 913 3.147629 TCCGTTTATCGCCTTTTCCAAA 58.852 40.909 0.00 0.00 38.35 3.28
907 914 3.058085 TCCGTTTATCGCCTTTTCCAAAC 60.058 43.478 0.00 0.00 38.35 2.93
908 915 3.057806 CCGTTTATCGCCTTTTCCAAACT 60.058 43.478 0.00 0.00 38.35 2.66
971 984 1.881602 CCGCCGCTATCCTACCTAC 59.118 63.158 0.00 0.00 0.00 3.18
972 985 0.608582 CCGCCGCTATCCTACCTACT 60.609 60.000 0.00 0.00 0.00 2.57
973 986 1.339438 CCGCCGCTATCCTACCTACTA 60.339 57.143 0.00 0.00 0.00 1.82
1229 1242 4.675029 CGGCTCGTGTTTCCGGGT 62.675 66.667 0.00 0.00 39.52 5.28
1403 1418 3.120321 TGCACGATTAGGTTGTCTTGT 57.880 42.857 0.00 0.00 0.00 3.16
1424 1439 6.260870 TGTTTTGCTTTTCGATGCCTATAA 57.739 33.333 0.00 0.00 0.00 0.98
1430 1445 6.919721 TGCTTTTCGATGCCTATAAAGTTTT 58.080 32.000 0.00 0.00 0.00 2.43
1441 1456 8.492673 TGCCTATAAAGTTTTGTATCTGTCTG 57.507 34.615 0.00 0.00 0.00 3.51
1447 1462 4.330250 AGTTTTGTATCTGTCTGCATGCT 58.670 39.130 20.33 0.00 0.00 3.79
1469 1484 6.183361 TGCTAGGTTTGTCTGCTATGATGTAT 60.183 38.462 0.00 0.00 0.00 2.29
1503 1518 3.319137 AGCTTGTAATTCACTCGCAGA 57.681 42.857 0.00 0.00 0.00 4.26
1572 1595 1.135315 CATTCGTGGCTGGCTTTCG 59.865 57.895 2.00 5.35 0.00 3.46
1633 1656 8.807948 TGGAAGAAATCTTTATCTTGGGTTAG 57.192 34.615 0.00 0.00 36.08 2.34
1637 1660 6.219772 AGAAATCTTTATCTTGGGTTAGGGGT 59.780 38.462 0.00 0.00 0.00 4.95
1703 1726 5.570234 TTGGTAACTCTGTCAAAACCAAC 57.430 39.130 0.76 0.00 40.94 3.77
1926 1969 2.746904 GTGCTGTTTTTGGCAAAAAGGT 59.253 40.909 32.10 0.00 40.71 3.50
1936 1979 3.681593 TGGCAAAAAGGTTAGAGCGTAT 58.318 40.909 0.00 0.00 0.00 3.06
2040 2086 1.031571 AGTCGCCCGTATCGGTACAA 61.032 55.000 6.65 0.00 46.80 2.41
2083 2129 5.276868 CGTCAGTCAGTAGTTTGGAAAAGTG 60.277 44.000 0.00 0.00 0.00 3.16
2088 2134 5.585047 GTCAGTAGTTTGGAAAAGTGTCAGT 59.415 40.000 0.00 0.00 0.00 3.41
2183 2230 8.706492 TGAAATCATGTAAGAAAATTCATGGC 57.294 30.769 0.00 0.00 38.39 4.40
2228 2275 8.404000 AGTCATTGTCTGATTCAGATAAAATGC 58.596 33.333 24.02 21.23 42.85 3.56
2287 2334 4.890088 TGTTTAGTATTCAGGAGTTGCGT 58.110 39.130 0.00 0.00 0.00 5.24
2326 2373 6.183360 GCTTTTATTTGCAACTTGCTATTCCC 60.183 38.462 14.78 0.00 45.31 3.97
2354 2401 3.719871 TCTGGGTGTCCTAGCTATTCAA 58.280 45.455 0.00 0.00 0.00 2.69
2355 2402 3.706594 TCTGGGTGTCCTAGCTATTCAAG 59.293 47.826 0.00 0.00 0.00 3.02
2366 2413 5.180868 CCTAGCTATTCAAGAATGTGATGGC 59.819 44.000 5.59 0.00 32.37 4.40
2394 2441 4.380531 CCTTTTGCTGTTGAGTCTCTGTA 58.619 43.478 0.65 0.00 0.00 2.74
2422 2469 5.784750 TGAACAATCTCTATTTCTGCACG 57.215 39.130 0.00 0.00 0.00 5.34
2472 2519 5.700832 GTGATGTGTCCAAATCTACAGTTGA 59.299 40.000 0.00 0.00 0.00 3.18
2505 2552 2.161808 CAGCAGATCAGAAAGCAAGTGG 59.838 50.000 0.00 0.00 0.00 4.00
2514 2561 1.615392 GAAAGCAAGTGGCCAGTCAAT 59.385 47.619 15.03 0.00 46.50 2.57
2812 2859 2.280797 GTCGGTCAGCAAGCACCA 60.281 61.111 2.98 0.00 32.33 4.17
3151 3232 7.364762 CCATAATAACACTAGTGGAGACCAACT 60.365 40.741 26.12 0.00 34.18 3.16
3199 3396 5.595952 AGAATGAGTTGCTCTTTTTGGAAGT 59.404 36.000 0.00 0.00 29.90 3.01
3245 3442 2.203294 ACGTTTGGGTGAGGGTGC 60.203 61.111 0.00 0.00 0.00 5.01
3346 3566 9.504708 AAGATTCTGAGGCATCTATTTATCAAG 57.495 33.333 0.00 0.00 0.00 3.02
4556 4776 2.092646 TGTTACACAGTCCCTTGTTGCT 60.093 45.455 0.00 0.00 0.00 3.91
4708 4929 3.820689 TCACATGCAGCGTTTTTATGAC 58.179 40.909 0.00 0.00 0.00 3.06
4760 4986 2.571212 TGTCCGTGAGCACTTTCATTT 58.429 42.857 0.00 0.00 0.00 2.32
4800 5026 4.783227 TGGCACTTCTATTTTACTCCCTCT 59.217 41.667 0.00 0.00 0.00 3.69
5001 5228 4.168088 CCCTTTGATCTACCCCCTGTTATT 59.832 45.833 0.00 0.00 0.00 1.40
5020 5247 6.159046 TGTTATTTGGGGGCAGTAGTATAAGT 59.841 38.462 0.00 0.00 0.00 2.24
5059 5286 4.842091 GCGCAAGGCAAGCCGATG 62.842 66.667 0.30 13.38 42.87 3.84
5060 5287 4.183686 CGCAAGGCAAGCCGATGG 62.184 66.667 17.51 6.15 41.95 3.51
5061 5288 3.830192 GCAAGGCAAGCCGATGGG 61.830 66.667 17.51 0.00 41.95 4.00
5081 5308 0.667993 CGATGGTGCAACAAGGTGTT 59.332 50.000 9.38 0.00 42.08 3.32
5082 5309 1.334960 CGATGGTGCAACAAGGTGTTC 60.335 52.381 9.38 0.00 38.77 3.18
5083 5310 1.000274 GATGGTGCAACAAGGTGTTCC 60.000 52.381 9.38 0.00 38.77 3.62
5084 5311 1.040339 TGGTGCAACAAGGTGTTCCC 61.040 55.000 0.00 0.00 38.77 3.97
5085 5312 1.040339 GGTGCAACAAGGTGTTCCCA 61.040 55.000 0.00 0.00 38.77 4.37
5086 5313 0.385390 GTGCAACAAGGTGTTCCCAG 59.615 55.000 0.00 0.00 38.77 4.45
5087 5314 0.257328 TGCAACAAGGTGTTCCCAGA 59.743 50.000 0.00 0.00 38.77 3.86
5126 5366 2.910977 GGAGTCCTTAAGGAGGTTTGGA 59.089 50.000 24.91 0.00 46.49 3.53
5127 5367 3.055021 GGAGTCCTTAAGGAGGTTTGGAG 60.055 52.174 24.91 0.00 46.49 3.86
5128 5368 3.583526 GAGTCCTTAAGGAGGTTTGGAGT 59.416 47.826 24.91 3.79 46.49 3.85
5129 5369 3.583526 AGTCCTTAAGGAGGTTTGGAGTC 59.416 47.826 24.91 8.74 46.49 3.36
5130 5370 2.910977 TCCTTAAGGAGGTTTGGAGTCC 59.089 50.000 20.72 0.73 46.39 3.85
5131 5371 2.913617 CCTTAAGGAGGTTTGGAGTCCT 59.086 50.000 17.21 0.00 42.87 3.85
5133 5373 4.534897 CCTTAAGGAGGTTTGGAGTCCTTA 59.465 45.833 17.21 6.06 46.77 2.69
5135 5375 4.642466 AAGGAGGTTTGGAGTCCTTAAG 57.358 45.455 11.33 0.00 46.77 1.85
5136 5376 2.913617 AGGAGGTTTGGAGTCCTTAAGG 59.086 50.000 15.98 15.98 37.42 2.69
5137 5377 2.910977 GGAGGTTTGGAGTCCTTAAGGA 59.089 50.000 20.72 20.72 43.08 3.36
5138 5378 3.055021 GGAGGTTTGGAGTCCTTAAGGAG 60.055 52.174 24.91 0.00 46.49 3.69
5139 5379 2.913617 AGGTTTGGAGTCCTTAAGGAGG 59.086 50.000 24.91 0.00 46.49 4.30
5140 5380 2.643304 GGTTTGGAGTCCTTAAGGAGGT 59.357 50.000 24.91 14.89 46.49 3.85
5141 5381 3.074094 GGTTTGGAGTCCTTAAGGAGGTT 59.926 47.826 24.91 13.12 46.49 3.50
5142 5382 4.447325 GGTTTGGAGTCCTTAAGGAGGTTT 60.447 45.833 24.91 10.61 46.49 3.27
5143 5383 4.367039 TTGGAGTCCTTAAGGAGGTTTG 57.633 45.455 24.91 0.00 46.49 2.93
5144 5384 2.642807 TGGAGTCCTTAAGGAGGTTTGG 59.357 50.000 24.91 0.00 46.49 3.28
5344 5592 5.393124 ACTTCACATTGTAATGCATCGTTG 58.607 37.500 0.00 0.00 40.04 4.10
5379 5627 3.217626 GGGGGATGATTTGTTGCTAGAG 58.782 50.000 0.00 0.00 0.00 2.43
5517 5770 0.322726 TGAGGTGGGATGTGTGCATG 60.323 55.000 0.00 0.00 35.07 4.06
5522 5788 1.612950 GTGGGATGTGTGCATGTTGAA 59.387 47.619 0.00 0.00 35.07 2.69
5525 5791 3.243805 TGGGATGTGTGCATGTTGAAAAG 60.244 43.478 0.00 0.00 35.07 2.27
5581 5847 9.138596 GTATATATAGGATTTCCCAGTCTCTCC 57.861 40.741 0.00 0.00 37.41 3.71
5680 5946 4.713553 TCTCATGAGTTGCCAGTTTTGTA 58.286 39.130 21.92 0.00 0.00 2.41
5784 6108 4.156556 TCAAGACAATTGCTATCAAGGCAC 59.843 41.667 5.05 0.00 39.55 5.01
5926 6267 2.350522 GCAGACACATGGGTCAGTTAG 58.649 52.381 29.15 14.07 40.29 2.34
5991 6332 3.654273 CCCATCCCTCTCTTAGGTTACA 58.346 50.000 0.00 0.00 44.90 2.41
6011 6352 8.859236 GTTACAAACCTAATCTAAGAGGGTTT 57.141 34.615 0.00 0.00 39.90 3.27
6094 6438 0.245539 CACAACGGGACACTACGGAT 59.754 55.000 0.00 0.00 0.00 4.18
6217 6562 3.497262 CACAAGTTTACCCTTCGGTCTTC 59.503 47.826 0.00 0.00 43.29 2.87
6222 6567 2.149973 TACCCTTCGGTCTTCTACCC 57.850 55.000 0.00 0.00 46.62 3.69
6361 6810 9.604626 GTTAGCAATGTTTATGAGAATAGATGC 57.395 33.333 0.00 0.00 0.00 3.91
6362 6811 9.565090 TTAGCAATGTTTATGAGAATAGATGCT 57.435 29.630 0.00 0.00 41.58 3.79
6363 6812 8.097078 AGCAATGTTTATGAGAATAGATGCTC 57.903 34.615 0.00 0.00 34.43 4.26
6364 6813 7.937942 AGCAATGTTTATGAGAATAGATGCTCT 59.062 33.333 0.00 0.00 34.43 4.09
6365 6814 9.212641 GCAATGTTTATGAGAATAGATGCTCTA 57.787 33.333 0.00 0.00 32.87 2.43
6421 6871 5.011090 GTGTATCATGGCTAACACTCTGA 57.989 43.478 11.19 0.00 39.27 3.27
6422 6872 5.419542 GTGTATCATGGCTAACACTCTGAA 58.580 41.667 11.19 0.00 39.27 3.02
6424 6874 7.210174 GTGTATCATGGCTAACACTCTGAATA 58.790 38.462 11.19 0.00 39.27 1.75
6426 6876 7.874528 TGTATCATGGCTAACACTCTGAATATG 59.125 37.037 0.00 0.00 0.00 1.78
6427 6877 5.059161 TCATGGCTAACACTCTGAATATGC 58.941 41.667 0.00 0.00 0.00 3.14
6429 6879 5.869649 TGGCTAACACTCTGAATATGCTA 57.130 39.130 0.00 0.00 0.00 3.49
6431 6881 6.049149 TGGCTAACACTCTGAATATGCTAAC 58.951 40.000 0.00 0.00 0.00 2.34
6432 6882 6.049149 GGCTAACACTCTGAATATGCTAACA 58.951 40.000 0.00 0.00 0.00 2.41
6433 6883 6.018669 GGCTAACACTCTGAATATGCTAACAC 60.019 42.308 0.00 0.00 0.00 3.32
6437 6887 8.654230 AACACTCTGAATATGCTAACACTATG 57.346 34.615 0.00 0.00 0.00 2.23
6438 6888 6.703607 ACACTCTGAATATGCTAACACTATGC 59.296 38.462 0.00 0.00 0.00 3.14
6441 6891 7.601886 ACTCTGAATATGCTAACACTATGCATC 59.398 37.037 0.19 0.00 44.91 3.91
6442 6892 7.444299 TCTGAATATGCTAACACTATGCATCA 58.556 34.615 0.19 0.00 44.91 3.07
6443 6893 7.933033 TCTGAATATGCTAACACTATGCATCAA 59.067 33.333 0.19 0.00 44.91 2.57
6444 6894 7.864686 TGAATATGCTAACACTATGCATCAAC 58.135 34.615 0.19 0.00 44.91 3.18
6445 6895 4.801147 ATGCTAACACTATGCATCAACG 57.199 40.909 0.19 0.00 42.92 4.10
6446 6896 2.935849 TGCTAACACTATGCATCAACGG 59.064 45.455 0.19 0.00 0.00 4.44
6447 6897 2.286418 GCTAACACTATGCATCAACGGC 60.286 50.000 0.19 0.00 0.00 5.68
6449 6899 2.979814 ACACTATGCATCAACGGCTA 57.020 45.000 0.19 0.00 0.00 3.93
6450 6900 2.826428 ACACTATGCATCAACGGCTAG 58.174 47.619 0.19 0.00 0.00 3.42
6452 6902 3.118775 ACACTATGCATCAACGGCTAGAA 60.119 43.478 0.19 0.00 0.00 2.10
6453 6903 3.246226 CACTATGCATCAACGGCTAGAAC 59.754 47.826 0.19 0.00 0.00 3.01
6454 6904 2.401583 ATGCATCAACGGCTAGAACA 57.598 45.000 0.00 0.00 0.00 3.18
6455 6905 2.177394 TGCATCAACGGCTAGAACAA 57.823 45.000 0.00 0.00 0.00 2.83
6457 6907 3.081061 TGCATCAACGGCTAGAACAATT 58.919 40.909 0.00 0.00 0.00 2.32
6458 6908 3.126858 TGCATCAACGGCTAGAACAATTC 59.873 43.478 0.00 0.00 0.00 2.17
6460 6910 4.728882 GCATCAACGGCTAGAACAATTCAG 60.729 45.833 0.00 0.00 0.00 3.02
6461 6911 4.265904 TCAACGGCTAGAACAATTCAGA 57.734 40.909 0.00 0.00 0.00 3.27
6462 6912 4.832248 TCAACGGCTAGAACAATTCAGAT 58.168 39.130 0.00 0.00 0.00 2.90
6463 6913 5.972935 TCAACGGCTAGAACAATTCAGATA 58.027 37.500 0.00 0.00 0.00 1.98
6464 6914 6.403049 TCAACGGCTAGAACAATTCAGATAA 58.597 36.000 0.00 0.00 0.00 1.75
6465 6915 6.312918 TCAACGGCTAGAACAATTCAGATAAC 59.687 38.462 0.00 0.00 0.00 1.89
6466 6916 5.978814 ACGGCTAGAACAATTCAGATAACT 58.021 37.500 0.00 0.00 0.00 2.24
6469 6919 8.204836 ACGGCTAGAACAATTCAGATAACTAAT 58.795 33.333 0.00 0.00 0.00 1.73
6470 6920 9.692749 CGGCTAGAACAATTCAGATAACTAATA 57.307 33.333 0.00 0.00 0.00 0.98
6475 6925 8.218488 AGAACAATTCAGATAACTAATACCCCC 58.782 37.037 0.00 0.00 0.00 5.40
6476 6926 7.460214 ACAATTCAGATAACTAATACCCCCA 57.540 36.000 0.00 0.00 0.00 4.96
6478 6928 8.164070 ACAATTCAGATAACTAATACCCCCATC 58.836 37.037 0.00 0.00 0.00 3.51
6482 6932 6.497259 TCAGATAACTAATACCCCCATCTGTC 59.503 42.308 8.14 0.00 39.16 3.51
6484 6934 6.726764 AGATAACTAATACCCCCATCTGTCTC 59.273 42.308 0.00 0.00 0.00 3.36
6485 6935 4.561254 ACTAATACCCCCATCTGTCTCT 57.439 45.455 0.00 0.00 0.00 3.10
6486 6936 4.484912 ACTAATACCCCCATCTGTCTCTC 58.515 47.826 0.00 0.00 0.00 3.20
6487 6937 3.715648 AATACCCCCATCTGTCTCTCT 57.284 47.619 0.00 0.00 0.00 3.10
6488 6938 2.461300 TACCCCCATCTGTCTCTCTG 57.539 55.000 0.00 0.00 0.00 3.35
6489 6939 0.415429 ACCCCCATCTGTCTCTCTGT 59.585 55.000 0.00 0.00 0.00 3.41
6490 6940 0.829333 CCCCCATCTGTCTCTCTGTG 59.171 60.000 0.00 0.00 0.00 3.66
6491 6941 1.566211 CCCCATCTGTCTCTCTGTGT 58.434 55.000 0.00 0.00 0.00 3.72
6492 6942 1.480137 CCCCATCTGTCTCTCTGTGTC 59.520 57.143 0.00 0.00 0.00 3.67
6493 6943 1.133982 CCCATCTGTCTCTCTGTGTCG 59.866 57.143 0.00 0.00 0.00 4.35
6494 6944 1.468908 CCATCTGTCTCTCTGTGTCGC 60.469 57.143 0.00 0.00 0.00 5.19
6495 6945 0.814457 ATCTGTCTCTCTGTGTCGCC 59.186 55.000 0.00 0.00 0.00 5.54
6497 6947 1.527433 CTGTCTCTCTGTGTCGCCCA 61.527 60.000 0.00 0.00 0.00 5.36
6498 6948 1.080434 GTCTCTCTGTGTCGCCCAC 60.080 63.158 0.00 0.00 44.78 4.61
6506 6956 2.734591 TGTCGCCCACACAGAGAC 59.265 61.111 0.00 0.00 0.00 3.36
6507 6957 2.131067 TGTCGCCCACACAGAGACA 61.131 57.895 0.00 0.00 39.21 3.41
6508 6958 1.373497 GTCGCCCACACAGAGACAG 60.373 63.158 0.00 0.00 32.57 3.51
6510 6960 0.900182 TCGCCCACACAGAGACAGAT 60.900 55.000 0.00 0.00 0.00 2.90
6511 6961 0.738762 CGCCCACACAGAGACAGATG 60.739 60.000 0.00 0.00 0.00 2.90
6512 6962 0.392193 GCCCACACAGAGACAGATGG 60.392 60.000 0.00 0.00 0.00 3.51
6513 6963 0.251354 CCCACACAGAGACAGATGGG 59.749 60.000 0.00 0.00 40.87 4.00
6514 6964 0.251354 CCACACAGAGACAGATGGGG 59.749 60.000 0.00 0.00 0.00 4.96
6518 6968 2.293184 ACACAGAGACAGATGGGGGTAT 60.293 50.000 0.00 0.00 0.00 2.73
6520 6970 3.967326 CACAGAGACAGATGGGGGTATTA 59.033 47.826 0.00 0.00 0.00 0.98
6521 6971 4.039730 CACAGAGACAGATGGGGGTATTAG 59.960 50.000 0.00 0.00 0.00 1.73
6522 6972 4.227197 CAGAGACAGATGGGGGTATTAGT 58.773 47.826 0.00 0.00 0.00 2.24
6523 6973 4.656112 CAGAGACAGATGGGGGTATTAGTT 59.344 45.833 0.00 0.00 0.00 2.24
6551 7093 2.401583 TGTTCTAGCCGTTGATGCAT 57.598 45.000 0.00 0.00 0.00 3.96
6552 7094 3.535280 TGTTCTAGCCGTTGATGCATA 57.465 42.857 0.00 0.00 0.00 3.14
6553 7095 3.457234 TGTTCTAGCCGTTGATGCATAG 58.543 45.455 0.00 0.00 0.00 2.23
6555 7097 3.097877 TCTAGCCGTTGATGCATAGTG 57.902 47.619 0.00 0.00 0.00 2.74
6556 7098 2.430694 TCTAGCCGTTGATGCATAGTGT 59.569 45.455 0.00 0.00 0.00 3.55
6557 7099 2.113860 AGCCGTTGATGCATAGTGTT 57.886 45.000 0.00 0.00 0.00 3.32
6558 7100 3.260475 AGCCGTTGATGCATAGTGTTA 57.740 42.857 0.00 0.00 0.00 2.41
6559 7101 3.198068 AGCCGTTGATGCATAGTGTTAG 58.802 45.455 0.00 0.00 0.00 2.34
6560 7102 2.286418 GCCGTTGATGCATAGTGTTAGC 60.286 50.000 0.00 0.00 0.00 3.09
6561 7103 2.935849 CCGTTGATGCATAGTGTTAGCA 59.064 45.455 0.00 0.00 43.14 3.49
6570 7112 7.902387 ATGCATAGTGTTAGCATATTCAGAG 57.098 36.000 0.00 0.00 46.27 3.35
6571 7113 6.820335 TGCATAGTGTTAGCATATTCAGAGT 58.180 36.000 0.00 0.00 32.55 3.24
6572 7114 6.703165 TGCATAGTGTTAGCATATTCAGAGTG 59.297 38.462 0.00 0.00 32.55 3.51
6573 7115 6.703607 GCATAGTGTTAGCATATTCAGAGTGT 59.296 38.462 0.00 0.00 0.00 3.55
6574 7116 7.225538 GCATAGTGTTAGCATATTCAGAGTGTT 59.774 37.037 0.00 0.00 0.00 3.32
6575 7117 9.750125 CATAGTGTTAGCATATTCAGAGTGTTA 57.250 33.333 0.00 0.00 0.00 2.41
6576 7118 9.973450 ATAGTGTTAGCATATTCAGAGTGTTAG 57.027 33.333 0.00 0.00 0.00 2.34
6577 7119 6.758886 AGTGTTAGCATATTCAGAGTGTTAGC 59.241 38.462 0.00 0.00 0.00 3.09
6578 7120 6.018669 GTGTTAGCATATTCAGAGTGTTAGCC 60.019 42.308 0.00 0.00 0.00 3.93
6581 7123 5.061853 AGCATATTCAGAGTGTTAGCCATG 58.938 41.667 0.00 0.00 0.00 3.66
6582 7124 5.059161 GCATATTCAGAGTGTTAGCCATGA 58.941 41.667 0.00 0.00 0.00 3.07
6583 7125 5.704515 GCATATTCAGAGTGTTAGCCATGAT 59.295 40.000 0.00 0.00 0.00 2.45
6584 7126 6.875726 GCATATTCAGAGTGTTAGCCATGATA 59.124 38.462 0.00 0.00 0.00 2.15
6585 7127 7.148507 GCATATTCAGAGTGTTAGCCATGATAC 60.149 40.741 0.00 0.00 0.00 2.24
6586 7128 5.675684 TTCAGAGTGTTAGCCATGATACA 57.324 39.130 0.00 0.00 0.00 2.29
6587 7129 5.011090 TCAGAGTGTTAGCCATGATACAC 57.989 43.478 0.00 3.02 40.81 2.90
6665 7373 2.896443 CCTTCGCTCTCACCTCCC 59.104 66.667 0.00 0.00 0.00 4.30
6786 7494 8.641499 TCAGAACTTCGCAATTTTAAAATGTT 57.359 26.923 14.04 11.84 0.00 2.71
7042 7751 4.482025 TGGATAACCCCAATCTGATTTCCT 59.518 41.667 13.34 0.00 32.31 3.36
7364 8073 7.294017 TCTTCTGAAGAAATTGGCAGAAATT 57.706 32.000 17.32 0.00 44.09 1.82
7537 8246 5.772393 ATGGTAAGTTGTTCATAGGACCA 57.228 39.130 0.00 0.00 39.88 4.02
7543 8252 1.199615 TGTTCATAGGACCATCCGCA 58.800 50.000 0.00 0.00 42.75 5.69
7559 8268 0.777631 CGCAAGAATTTTGTGGCACG 59.222 50.000 13.77 0.00 43.02 5.34
7561 8270 2.053627 GCAAGAATTTTGTGGCACGAG 58.946 47.619 13.77 0.00 0.00 4.18
7911 8620 5.833406 ACGCATATTCAATTTGGATGACA 57.167 34.783 0.08 0.00 0.00 3.58
7936 8645 5.977129 GGCTTGTTCCGTTAAAATATCATGG 59.023 40.000 0.00 0.00 0.00 3.66
7958 8667 9.006839 CATGGTATTAGATGATTACTTGCATGT 57.993 33.333 10.40 10.40 0.00 3.21
7979 8688 7.415206 GCATGTTGTCCGAAGTTAAGGATTAAT 60.415 37.037 3.23 0.00 43.30 1.40
7980 8689 9.104965 CATGTTGTCCGAAGTTAAGGATTAATA 57.895 33.333 3.23 2.40 43.30 0.98
7981 8690 8.712285 TGTTGTCCGAAGTTAAGGATTAATAG 57.288 34.615 3.23 0.00 43.30 1.73
8049 8758 6.425577 TTTATACGCATGTTGGTTAGTTCC 57.574 37.500 0.00 0.00 0.00 3.62
8062 8771 4.469945 TGGTTAGTTCCAAATCCTCGAGAT 59.530 41.667 15.71 2.59 34.24 2.75
8077 8786 6.178324 TCCTCGAGATACTGTCAGTTCTAAA 58.822 40.000 15.71 5.23 0.00 1.85
8224 8933 0.626916 TGGGTAATAAGTGTGCCCCC 59.373 55.000 0.00 0.00 38.57 5.40
8296 9005 0.392461 AGTGTGTGTTGGCGACTTGT 60.392 50.000 6.41 0.00 0.00 3.16
8407 9119 6.972328 GTGATCTCTCTAGTTTGACATGTCTC 59.028 42.308 25.55 15.62 0.00 3.36
8410 9122 6.241645 TCTCTCTAGTTTGACATGTCTCTCA 58.758 40.000 25.55 4.05 0.00 3.27
8683 9396 2.957006 AGAGGCATTCTGGCATCATTTC 59.043 45.455 2.62 0.00 46.34 2.17
8773 9489 0.758734 GAAAGGCAAGGCAAGGGTTT 59.241 50.000 0.00 0.00 0.00 3.27
8786 9502 3.434637 CAAGGGTTTATTTGCGAATCGG 58.565 45.455 4.35 0.00 0.00 4.18
8816 9532 0.603975 GGCCTCAGCGAACTGTTTCT 60.604 55.000 0.00 0.00 44.77 2.52
8876 9592 0.101579 TGACGAAATCGCGGCTGATA 59.898 50.000 6.13 0.00 44.43 2.15
8928 9644 4.288626 AGTCCACCACAGATTAGGCTAAAA 59.711 41.667 11.59 0.00 0.00 1.52
8929 9645 5.007682 GTCCACCACAGATTAGGCTAAAAA 58.992 41.667 11.59 0.00 0.00 1.94
8935 9651 6.761714 ACCACAGATTAGGCTAAAAATAGTCG 59.238 38.462 11.59 2.18 0.00 4.18
8985 9784 2.713531 GATGTGTGGGGGTGGCAAGT 62.714 60.000 0.00 0.00 0.00 3.16
9074 9877 7.310983 CCAAAATTGGTCATATAAAACCCCAGT 60.311 37.037 3.95 0.00 43.43 4.00
9087 9890 3.141767 ACCCCAGTCAGTCTAAAAAGC 57.858 47.619 0.00 0.00 0.00 3.51
9112 9915 6.360947 CGAGTGTTGTGATAGGAATAAGATCG 59.639 42.308 0.00 0.00 0.00 3.69
9216 10116 3.269381 TGATAAATCTCCTGCCCTGGTTT 59.731 43.478 0.00 0.00 0.00 3.27
9221 10121 0.682209 CTCCTGCCCTGGTTTCCATG 60.682 60.000 0.00 0.00 30.82 3.66
9222 10122 2.353610 CCTGCCCTGGTTTCCATGC 61.354 63.158 0.00 4.29 33.57 4.06
9226 10126 0.323360 GCCCTGGTTTCCATGCTGTA 60.323 55.000 0.00 0.00 30.82 2.74
9227 10127 1.686115 GCCCTGGTTTCCATGCTGTAT 60.686 52.381 0.00 0.00 30.82 2.29
9280 10181 0.179089 CGAATCAGAGCCAGGGACAG 60.179 60.000 0.00 0.00 0.00 3.51
9305 10206 4.153411 TGAAAAGGAAAATAAAGGGCCGA 58.847 39.130 0.00 0.00 0.00 5.54
9777 10678 1.536662 GATCTCCGGGGCCAGGTAT 60.537 63.158 22.56 16.48 0.00 2.73
9801 10710 3.870606 GTCCCCACGAACGACATG 58.129 61.111 0.14 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.157940 TCTCTTCATATTGAGCTATGCCC 57.842 43.478 0.00 0.00 0.00 5.36
15 16 3.994317 TGTATGTGAGGGGATCTCTTCA 58.006 45.455 2.70 2.70 42.86 3.02
31 32 4.353737 GCTGTGTGCATGGTTATTGTATG 58.646 43.478 0.00 0.00 42.31 2.39
49 50 1.526917 GCACCAACCAGTCTGCTGT 60.527 57.895 0.00 0.00 41.02 4.40
54 55 0.179018 GTGAAGGCACCAACCAGTCT 60.179 55.000 0.00 0.00 39.14 3.24
55 56 2.331265 GTGAAGGCACCAACCAGTC 58.669 57.895 0.00 0.00 39.14 3.51
71 72 2.227089 GACCTCCAGTGCGGTAGGTG 62.227 65.000 8.81 0.00 42.22 4.00
81 82 0.113776 TCTAACCCACGACCTCCAGT 59.886 55.000 0.00 0.00 0.00 4.00
98 99 2.044620 GGGAAGGGGTGGGGATCT 59.955 66.667 0.00 0.00 0.00 2.75
150 155 9.681062 TTGGAGTTAGGGTTTGAAAGATATAAG 57.319 33.333 0.00 0.00 0.00 1.73
492 497 4.694760 ATGGTAGCATGTGCATAAGAGA 57.305 40.909 6.62 0.00 45.16 3.10
572 577 6.308766 GTGTATGCATTTGATGTTGTTTCTCC 59.691 38.462 3.54 0.00 0.00 3.71
701 708 3.605056 CACGCAACAAGCAACATGATAAG 59.395 43.478 0.00 0.00 46.13 1.73
708 715 2.014064 ATGCCACGCAACAAGCAACA 62.014 50.000 0.00 0.00 43.62 3.33
721 728 5.579511 CCTTTGAAATCTTTCATGATGCCAC 59.420 40.000 6.21 0.00 45.65 5.01
735 742 5.977129 ACGACACAACAAATCCTTTGAAATC 59.023 36.000 6.61 0.00 43.26 2.17
743 750 3.963383 GTTGACGACACAACAAATCCT 57.037 42.857 15.41 0.00 46.19 3.24
766 773 4.657814 AACAATTCACCCCTCATACACT 57.342 40.909 0.00 0.00 0.00 3.55
780 787 3.712187 TGCAACGGGAGAAAAACAATTC 58.288 40.909 0.00 0.00 0.00 2.17
824 831 7.982919 TGCAACGAACTAGGAGCTTTATTAATA 59.017 33.333 0.00 0.00 0.00 0.98
825 832 6.821665 TGCAACGAACTAGGAGCTTTATTAAT 59.178 34.615 0.00 0.00 0.00 1.40
826 833 6.167685 TGCAACGAACTAGGAGCTTTATTAA 58.832 36.000 0.00 0.00 0.00 1.40
827 834 5.726397 TGCAACGAACTAGGAGCTTTATTA 58.274 37.500 0.00 0.00 0.00 0.98
828 835 4.575885 TGCAACGAACTAGGAGCTTTATT 58.424 39.130 0.00 0.00 0.00 1.40
829 836 4.202245 TGCAACGAACTAGGAGCTTTAT 57.798 40.909 0.00 0.00 0.00 1.40
830 837 3.671008 TGCAACGAACTAGGAGCTTTA 57.329 42.857 0.00 0.00 0.00 1.85
831 838 2.543777 TGCAACGAACTAGGAGCTTT 57.456 45.000 0.00 0.00 0.00 3.51
832 839 2.543777 TTGCAACGAACTAGGAGCTT 57.456 45.000 0.00 0.00 0.00 3.74
833 840 2.543777 TTTGCAACGAACTAGGAGCT 57.456 45.000 0.00 0.00 0.00 4.09
834 841 3.619233 TTTTTGCAACGAACTAGGAGC 57.381 42.857 0.00 0.00 0.00 4.70
856 863 1.456919 AGGAGTAGGGGGCTGTTTTT 58.543 50.000 0.00 0.00 0.00 1.94
857 864 1.456919 AAGGAGTAGGGGGCTGTTTT 58.543 50.000 0.00 0.00 0.00 2.43
858 865 1.914108 GTAAGGAGTAGGGGGCTGTTT 59.086 52.381 0.00 0.00 0.00 2.83
859 866 1.080666 AGTAAGGAGTAGGGGGCTGTT 59.919 52.381 0.00 0.00 0.00 3.16
860 867 0.717196 AGTAAGGAGTAGGGGGCTGT 59.283 55.000 0.00 0.00 0.00 4.40
861 868 1.415200 GAGTAAGGAGTAGGGGGCTG 58.585 60.000 0.00 0.00 0.00 4.85
862 869 0.265254 GGAGTAAGGAGTAGGGGGCT 59.735 60.000 0.00 0.00 0.00 5.19
863 870 0.763604 GGGAGTAAGGAGTAGGGGGC 60.764 65.000 0.00 0.00 0.00 5.80
864 871 0.942721 AGGGAGTAAGGAGTAGGGGG 59.057 60.000 0.00 0.00 0.00 5.40
865 872 3.245694 GGATAGGGAGTAAGGAGTAGGGG 60.246 56.522 0.00 0.00 0.00 4.79
866 873 3.561744 CGGATAGGGAGTAAGGAGTAGGG 60.562 56.522 0.00 0.00 0.00 3.53
867 874 3.074242 ACGGATAGGGAGTAAGGAGTAGG 59.926 52.174 0.00 0.00 0.00 3.18
868 875 4.370094 ACGGATAGGGAGTAAGGAGTAG 57.630 50.000 0.00 0.00 0.00 2.57
869 876 4.803329 AACGGATAGGGAGTAAGGAGTA 57.197 45.455 0.00 0.00 0.00 2.59
870 877 3.684408 AACGGATAGGGAGTAAGGAGT 57.316 47.619 0.00 0.00 0.00 3.85
871 878 5.106237 CGATAAACGGATAGGGAGTAAGGAG 60.106 48.000 0.00 0.00 38.46 3.69
872 879 4.763793 CGATAAACGGATAGGGAGTAAGGA 59.236 45.833 0.00 0.00 38.46 3.36
873 880 4.617762 GCGATAAACGGATAGGGAGTAAGG 60.618 50.000 0.00 0.00 42.83 2.69
874 881 4.483311 GCGATAAACGGATAGGGAGTAAG 58.517 47.826 0.00 0.00 42.83 2.34
875 882 3.256631 GGCGATAAACGGATAGGGAGTAA 59.743 47.826 0.00 0.00 42.83 2.24
876 883 2.821969 GGCGATAAACGGATAGGGAGTA 59.178 50.000 0.00 0.00 42.83 2.59
877 884 1.617357 GGCGATAAACGGATAGGGAGT 59.383 52.381 0.00 0.00 42.83 3.85
878 885 1.893801 AGGCGATAAACGGATAGGGAG 59.106 52.381 0.00 0.00 42.83 4.30
879 886 2.005370 AGGCGATAAACGGATAGGGA 57.995 50.000 0.00 0.00 42.83 4.20
880 887 2.833631 AAGGCGATAAACGGATAGGG 57.166 50.000 0.00 0.00 42.83 3.53
881 888 3.497262 GGAAAAGGCGATAAACGGATAGG 59.503 47.826 0.00 0.00 42.83 2.57
882 889 4.124238 TGGAAAAGGCGATAAACGGATAG 58.876 43.478 0.00 0.00 42.83 2.08
883 890 4.139859 TGGAAAAGGCGATAAACGGATA 57.860 40.909 0.00 0.00 42.83 2.59
884 891 2.993937 TGGAAAAGGCGATAAACGGAT 58.006 42.857 0.00 0.00 42.83 4.18
885 892 2.476126 TGGAAAAGGCGATAAACGGA 57.524 45.000 0.00 0.00 42.83 4.69
886 893 3.057806 AGTTTGGAAAAGGCGATAAACGG 60.058 43.478 0.00 0.00 42.83 4.44
887 894 4.155310 AGTTTGGAAAAGGCGATAAACG 57.845 40.909 0.00 0.00 45.66 3.60
888 895 4.156182 CGAGTTTGGAAAAGGCGATAAAC 58.844 43.478 0.00 0.00 0.00 2.01
889 896 3.189702 CCGAGTTTGGAAAAGGCGATAAA 59.810 43.478 0.00 0.00 0.00 1.40
890 897 2.745281 CCGAGTTTGGAAAAGGCGATAA 59.255 45.455 0.00 0.00 0.00 1.75
891 898 2.352388 CCGAGTTTGGAAAAGGCGATA 58.648 47.619 0.00 0.00 0.00 2.92
892 899 1.165270 CCGAGTTTGGAAAAGGCGAT 58.835 50.000 0.00 0.00 0.00 4.58
893 900 1.512156 GCCGAGTTTGGAAAAGGCGA 61.512 55.000 0.00 0.00 34.94 5.54
894 901 1.081442 GCCGAGTTTGGAAAAGGCG 60.081 57.895 0.00 0.00 34.94 5.52
895 902 1.081442 CGCCGAGTTTGGAAAAGGC 60.081 57.895 0.00 0.00 41.03 4.35
896 903 1.081442 GCGCCGAGTTTGGAAAAGG 60.081 57.895 0.00 0.00 0.00 3.11
897 904 0.385974 CTGCGCCGAGTTTGGAAAAG 60.386 55.000 4.18 0.00 0.00 2.27
898 905 1.652012 CTGCGCCGAGTTTGGAAAA 59.348 52.632 4.18 0.00 0.00 2.29
899 906 2.903547 GCTGCGCCGAGTTTGGAAA 61.904 57.895 4.18 0.00 0.00 3.13
900 907 3.353836 GCTGCGCCGAGTTTGGAA 61.354 61.111 4.18 0.00 0.00 3.53
924 931 1.545428 CCTGCTGGGCTTCAGTTTACA 60.545 52.381 0.71 0.00 45.08 2.41
1210 1223 2.259204 CCGGAAACACGAGCCGTA 59.741 61.111 0.00 0.00 43.35 4.02
1221 1234 3.948719 AAGCAGCGGACCCGGAAA 61.949 61.111 0.73 0.00 40.19 3.13
1403 1418 6.919721 ACTTTATAGGCATCGAAAAGCAAAA 58.080 32.000 9.57 4.45 31.78 2.44
1424 1439 4.763793 AGCATGCAGACAGATACAAAACTT 59.236 37.500 21.98 0.00 0.00 2.66
1430 1445 3.033909 ACCTAGCATGCAGACAGATACA 58.966 45.455 21.98 0.00 0.00 2.29
1441 1456 1.457346 AGCAGACAAACCTAGCATGC 58.543 50.000 10.51 10.51 0.00 4.06
1447 1462 6.992123 CCAATACATCATAGCAGACAAACCTA 59.008 38.462 0.00 0.00 0.00 3.08
1469 1484 1.144913 ACAAGCTTAGCAGGTTCCCAA 59.855 47.619 7.07 0.00 38.76 4.12
1482 1497 3.664107 TCTGCGAGTGAATTACAAGCTT 58.336 40.909 0.00 0.00 35.75 3.74
1572 1595 1.127582 CGCTTAGCAACAAGACAGCTC 59.872 52.381 4.70 0.00 39.68 4.09
1633 1656 2.838693 GGAGGAGCGAGGTACCCC 60.839 72.222 8.74 1.61 0.00 4.95
1637 1660 1.980232 TTTGCGGAGGAGCGAGGTA 60.980 57.895 0.00 0.00 40.67 3.08
1769 1807 6.147864 ACAACATTGTGACTGTTAGCAAAT 57.852 33.333 0.00 0.00 40.49 2.32
1879 1922 5.047731 AGCTCCATAAAAGTCTTGCCTTTTC 60.048 40.000 2.45 0.00 42.20 2.29
1885 1928 4.201861 GCACTAGCTCCATAAAAGTCTTGC 60.202 45.833 0.00 0.00 37.91 4.01
1926 1969 3.867857 TGCACCAATTCATACGCTCTAA 58.132 40.909 0.00 0.00 0.00 2.10
2083 2129 3.057456 CCACCCATATACGAGCTACTGAC 60.057 52.174 0.00 0.00 0.00 3.51
2088 2134 4.476297 TCTTTCCACCCATATACGAGCTA 58.524 43.478 0.00 0.00 0.00 3.32
2139 2185 6.998968 TTTCATGAAATGTTTTGCAAGGTT 57.001 29.167 16.91 0.00 46.80 3.50
2182 2229 8.171373 AATGACTCATTAGGTAGGCATAAGTGC 61.171 40.741 2.17 0.00 40.66 4.40
2183 2230 6.161855 TGACTCATTAGGTAGGCATAAGTG 57.838 41.667 0.00 0.00 0.00 3.16
2256 2303 9.574516 ACTCCTGAATACTAAACAAGAAACATT 57.425 29.630 0.00 0.00 0.00 2.71
2257 2304 9.574516 AACTCCTGAATACTAAACAAGAAACAT 57.425 29.630 0.00 0.00 0.00 2.71
2258 2305 8.836413 CAACTCCTGAATACTAAACAAGAAACA 58.164 33.333 0.00 0.00 0.00 2.83
2259 2306 7.803659 GCAACTCCTGAATACTAAACAAGAAAC 59.196 37.037 0.00 0.00 0.00 2.78
2273 2320 4.359706 GTTGAAAAACGCAACTCCTGAAT 58.640 39.130 0.00 0.00 41.71 2.57
2275 2322 3.414549 GTTGAAAAACGCAACTCCTGA 57.585 42.857 0.00 0.00 41.71 3.86
2287 2334 9.102757 TGCAAATAAAAGCACATAGTTGAAAAA 57.897 25.926 6.92 0.00 35.51 1.94
2326 2373 2.102252 GCTAGGACACCCAGAATCTCTG 59.898 54.545 0.00 0.00 43.91 3.35
2354 2401 1.076485 GCAGGGGCCATCACATTCT 60.076 57.895 4.39 0.00 0.00 2.40
2355 2402 3.530067 GCAGGGGCCATCACATTC 58.470 61.111 4.39 0.00 0.00 2.67
2394 2441 8.579006 TGCAGAAATAGAGATTGTTCATGTTTT 58.421 29.630 0.00 0.00 0.00 2.43
2422 2469 1.244019 CCTGTGGCAAAGTACCTGGC 61.244 60.000 3.55 11.09 39.69 4.85
2505 2552 2.413142 GCCTGCTGGATTGACTGGC 61.413 63.158 14.77 0.00 40.52 4.85
2514 2561 4.666253 GTTGCCCTGCCTGCTGGA 62.666 66.667 14.77 0.00 37.23 3.86
2678 2725 1.545582 TGCCAACTGGAAGCTATTTGC 59.454 47.619 0.00 0.00 37.60 3.68
2725 2772 0.250467 TGGAGCCTGTCAAACTCTGC 60.250 55.000 2.69 0.00 0.00 4.26
3199 3396 7.713507 CCCTAACTAATGTTATCGGTCAAATGA 59.286 37.037 0.00 0.00 37.92 2.57
3245 3442 1.995484 CACAATCTATCATAGCCGCCG 59.005 52.381 0.00 0.00 0.00 6.46
3327 3547 9.851686 ACATTAACTTGATAAATAGATGCCTCA 57.148 29.630 0.00 0.00 0.00 3.86
3346 3566 8.507249 ACTTTGCATTACTCTCTTCACATTAAC 58.493 33.333 0.00 0.00 0.00 2.01
4556 4776 5.988310 AATGCACTGAGATTTGGAAATCA 57.012 34.783 13.30 0.00 45.59 2.57
4832 5058 7.113658 TGCTAATACTCCCTCTGTAAAGAAG 57.886 40.000 0.00 0.00 0.00 2.85
4833 5059 7.565398 AGATGCTAATACTCCCTCTGTAAAGAA 59.435 37.037 0.00 0.00 0.00 2.52
4834 5060 7.069986 AGATGCTAATACTCCCTCTGTAAAGA 58.930 38.462 0.00 0.00 0.00 2.52
4903 5129 6.183360 CCAGTGTAACAGATCAACAACAGTTT 60.183 38.462 0.00 0.00 41.43 2.66
4911 5137 6.801539 TCAATTCCAGTGTAACAGATCAAC 57.198 37.500 0.00 0.00 41.43 3.18
4968 5195 6.192044 GGGTAGATCAAAGGGAATTACCAAA 58.808 40.000 10.06 0.00 38.95 3.28
5001 5228 2.775384 CCACTTATACTACTGCCCCCAA 59.225 50.000 0.00 0.00 0.00 4.12
5057 5284 1.597797 CTTGTTGCACCATCGCCCAT 61.598 55.000 0.00 0.00 0.00 4.00
5058 5285 2.203408 TTGTTGCACCATCGCCCA 60.203 55.556 0.00 0.00 0.00 5.36
5059 5286 2.568090 CTTGTTGCACCATCGCCC 59.432 61.111 0.00 0.00 0.00 6.13
5060 5287 2.268076 ACCTTGTTGCACCATCGCC 61.268 57.895 0.00 0.00 0.00 5.54
5061 5288 1.081242 CACCTTGTTGCACCATCGC 60.081 57.895 0.00 0.00 0.00 4.58
5062 5289 0.667993 AACACCTTGTTGCACCATCG 59.332 50.000 0.00 0.00 39.45 3.84
5063 5290 1.000274 GGAACACCTTGTTGCACCATC 60.000 52.381 5.76 0.00 46.14 3.51
5130 5370 2.375509 AGACACCCCAAACCTCCTTAAG 59.624 50.000 0.00 0.00 0.00 1.85
5131 5371 2.374170 GAGACACCCCAAACCTCCTTAA 59.626 50.000 0.00 0.00 0.00 1.85
5132 5372 1.982958 GAGACACCCCAAACCTCCTTA 59.017 52.381 0.00 0.00 0.00 2.69
5133 5373 0.771755 GAGACACCCCAAACCTCCTT 59.228 55.000 0.00 0.00 0.00 3.36
5134 5374 1.134438 GGAGACACCCCAAACCTCCT 61.134 60.000 0.00 0.00 40.07 3.69
5135 5375 1.379146 GGAGACACCCCAAACCTCC 59.621 63.158 0.00 0.00 36.94 4.30
5136 5376 2.151369 TGGAGACACCCCAAACCTC 58.849 57.895 0.00 0.00 38.00 3.85
5137 5377 4.430388 TGGAGACACCCCAAACCT 57.570 55.556 0.00 0.00 38.00 3.50
5193 5441 2.147958 CAAGGCGCTAGTTGTTGGTAA 58.852 47.619 7.64 0.00 0.00 2.85
5379 5627 3.118992 GGCCTTCCATGTCATCCTTTTTC 60.119 47.826 0.00 0.00 0.00 2.29
5472 5720 3.181494 CGCATGTCATGTGGTTCATCATT 60.181 43.478 17.11 0.00 37.14 2.57
5482 5735 1.135888 CCTCACAACGCATGTCATGTG 60.136 52.381 22.05 22.05 41.46 3.21
5517 5770 4.379499 CCCGCTACTTCCATTCTTTTCAAC 60.379 45.833 0.00 0.00 0.00 3.18
5522 5788 1.913419 TCCCCGCTACTTCCATTCTTT 59.087 47.619 0.00 0.00 0.00 2.52
5525 5791 0.179054 GGTCCCCGCTACTTCCATTC 60.179 60.000 0.00 0.00 0.00 2.67
5784 6108 2.744709 CAGGCGTAAACGGGGTGG 60.745 66.667 4.49 0.00 40.23 4.61
6011 6352 6.572509 CGAAAGGTGAAGAGATCTAAAGTCCA 60.573 42.308 0.00 0.00 0.00 4.02
6094 6438 1.209383 CTTCGCGTCTTCTCGTCCA 59.791 57.895 5.77 0.00 0.00 4.02
6217 6562 3.864243 TGTTACTATTGTTGGCGGGTAG 58.136 45.455 0.00 0.00 0.00 3.18
6320 6769 5.986501 TTGCTAACAAAATATTCCCGGTT 57.013 34.783 0.00 0.00 31.21 4.44
6323 6772 7.826260 AAACATTGCTAACAAAATATTCCCG 57.174 32.000 0.00 0.00 39.77 5.14
6405 6855 5.061853 AGCATATTCAGAGTGTTAGCCATG 58.938 41.667 0.00 0.00 0.00 3.66
6406 6856 5.301835 AGCATATTCAGAGTGTTAGCCAT 57.698 39.130 0.00 0.00 0.00 4.40
6407 6857 4.760530 AGCATATTCAGAGTGTTAGCCA 57.239 40.909 0.00 0.00 0.00 4.75
6408 6858 6.018669 GTGTTAGCATATTCAGAGTGTTAGCC 60.019 42.308 0.00 0.00 0.00 3.93
6410 6860 9.973450 ATAGTGTTAGCATATTCAGAGTGTTAG 57.027 33.333 0.00 0.00 0.00 2.34
6411 6861 9.750125 CATAGTGTTAGCATATTCAGAGTGTTA 57.250 33.333 0.00 0.00 0.00 2.41
6414 6864 6.703165 TGCATAGTGTTAGCATATTCAGAGTG 59.297 38.462 0.00 0.00 32.55 3.51
6415 6865 6.820335 TGCATAGTGTTAGCATATTCAGAGT 58.180 36.000 0.00 0.00 32.55 3.24
6416 6866 7.902387 ATGCATAGTGTTAGCATATTCAGAG 57.098 36.000 0.00 0.00 46.27 3.35
6426 6876 2.286418 GCCGTTGATGCATAGTGTTAGC 60.286 50.000 0.00 0.00 0.00 3.09
6427 6877 3.198068 AGCCGTTGATGCATAGTGTTAG 58.802 45.455 0.00 0.00 0.00 2.34
6429 6879 2.113860 AGCCGTTGATGCATAGTGTT 57.886 45.000 0.00 0.00 0.00 3.32
6431 6881 3.097877 TCTAGCCGTTGATGCATAGTG 57.902 47.619 0.00 0.00 0.00 2.74
6432 6882 3.118775 TGTTCTAGCCGTTGATGCATAGT 60.119 43.478 0.00 0.00 0.00 2.12
6433 6883 3.457234 TGTTCTAGCCGTTGATGCATAG 58.543 45.455 0.00 0.00 0.00 2.23
6437 6887 3.126858 TGAATTGTTCTAGCCGTTGATGC 59.873 43.478 0.00 0.00 0.00 3.91
6438 6888 4.631377 TCTGAATTGTTCTAGCCGTTGATG 59.369 41.667 0.00 0.00 0.00 3.07
6440 6890 4.265904 TCTGAATTGTTCTAGCCGTTGA 57.734 40.909 0.00 0.00 0.00 3.18
6441 6891 6.313905 AGTTATCTGAATTGTTCTAGCCGTTG 59.686 38.462 0.00 0.00 0.00 4.10
6442 6892 6.407202 AGTTATCTGAATTGTTCTAGCCGTT 58.593 36.000 0.00 0.00 0.00 4.44
6443 6893 5.978814 AGTTATCTGAATTGTTCTAGCCGT 58.021 37.500 0.00 0.00 0.00 5.68
6444 6894 8.594881 ATTAGTTATCTGAATTGTTCTAGCCG 57.405 34.615 0.00 0.00 0.00 5.52
6449 6899 8.218488 GGGGGTATTAGTTATCTGAATTGTTCT 58.782 37.037 0.00 0.00 0.00 3.01
6450 6900 7.996644 TGGGGGTATTAGTTATCTGAATTGTTC 59.003 37.037 0.00 0.00 0.00 3.18
6452 6902 7.460214 TGGGGGTATTAGTTATCTGAATTGT 57.540 36.000 0.00 0.00 0.00 2.71
6453 6903 8.386264 AGATGGGGGTATTAGTTATCTGAATTG 58.614 37.037 0.00 0.00 0.00 2.32
6454 6904 8.386264 CAGATGGGGGTATTAGTTATCTGAATT 58.614 37.037 0.00 0.00 41.38 2.17
6455 6905 7.517604 ACAGATGGGGGTATTAGTTATCTGAAT 59.482 37.037 15.71 0.00 41.38 2.57
6457 6907 6.390504 ACAGATGGGGGTATTAGTTATCTGA 58.609 40.000 15.71 0.00 41.38 3.27
6458 6908 6.498651 AGACAGATGGGGGTATTAGTTATCTG 59.501 42.308 0.00 0.00 43.32 2.90
6460 6910 6.726764 AGAGACAGATGGGGGTATTAGTTATC 59.273 42.308 0.00 0.00 0.00 1.75
6461 6911 6.635021 AGAGACAGATGGGGGTATTAGTTAT 58.365 40.000 0.00 0.00 0.00 1.89
6462 6912 6.039415 AGAGACAGATGGGGGTATTAGTTA 57.961 41.667 0.00 0.00 0.00 2.24
6463 6913 4.897051 AGAGACAGATGGGGGTATTAGTT 58.103 43.478 0.00 0.00 0.00 2.24
6464 6914 4.171044 AGAGAGACAGATGGGGGTATTAGT 59.829 45.833 0.00 0.00 0.00 2.24
6465 6915 4.526262 CAGAGAGACAGATGGGGGTATTAG 59.474 50.000 0.00 0.00 0.00 1.73
6466 6916 4.078571 ACAGAGAGACAGATGGGGGTATTA 60.079 45.833 0.00 0.00 0.00 0.98
6469 6919 1.646447 ACAGAGAGACAGATGGGGGTA 59.354 52.381 0.00 0.00 0.00 3.69
6470 6920 0.415429 ACAGAGAGACAGATGGGGGT 59.585 55.000 0.00 0.00 0.00 4.95
6471 6921 0.829333 CACAGAGAGACAGATGGGGG 59.171 60.000 0.00 0.00 0.00 5.40
6473 6923 1.133982 CGACACAGAGAGACAGATGGG 59.866 57.143 0.00 0.00 0.00 4.00
6474 6924 1.468908 GCGACACAGAGAGACAGATGG 60.469 57.143 0.00 0.00 0.00 3.51
6475 6925 1.468908 GGCGACACAGAGAGACAGATG 60.469 57.143 0.00 0.00 0.00 2.90
6476 6926 0.814457 GGCGACACAGAGAGACAGAT 59.186 55.000 0.00 0.00 0.00 2.90
6478 6928 1.214062 GGGCGACACAGAGAGACAG 59.786 63.158 0.00 0.00 0.00 3.51
6489 6939 2.087462 CTGTCTCTGTGTGGGCGACA 62.087 60.000 0.00 0.00 33.94 4.35
6490 6940 1.373497 CTGTCTCTGTGTGGGCGAC 60.373 63.158 0.00 0.00 0.00 5.19
6491 6941 0.900182 ATCTGTCTCTGTGTGGGCGA 60.900 55.000 0.00 0.00 0.00 5.54
6492 6942 0.738762 CATCTGTCTCTGTGTGGGCG 60.739 60.000 0.00 0.00 0.00 6.13
6493 6943 0.392193 CCATCTGTCTCTGTGTGGGC 60.392 60.000 0.00 0.00 0.00 5.36
6494 6944 0.251354 CCCATCTGTCTCTGTGTGGG 59.749 60.000 0.00 0.00 40.22 4.61
6495 6945 0.251354 CCCCATCTGTCTCTGTGTGG 59.749 60.000 0.00 0.00 0.00 4.17
6497 6947 0.178891 ACCCCCATCTGTCTCTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
6498 6948 1.866015 TACCCCCATCTGTCTCTGTG 58.134 55.000 0.00 0.00 0.00 3.66
6500 6950 4.227197 ACTAATACCCCCATCTGTCTCTG 58.773 47.826 0.00 0.00 0.00 3.35
6501 6951 4.561254 ACTAATACCCCCATCTGTCTCT 57.439 45.455 0.00 0.00 0.00 3.10
6505 6955 6.390504 TCAGATAACTAATACCCCCATCTGT 58.609 40.000 8.14 0.00 39.16 3.41
6506 6956 6.935240 TCAGATAACTAATACCCCCATCTG 57.065 41.667 0.00 0.00 39.36 2.90
6507 6957 8.386264 CAATTCAGATAACTAATACCCCCATCT 58.614 37.037 0.00 0.00 0.00 2.90
6508 6958 8.164070 ACAATTCAGATAACTAATACCCCCATC 58.836 37.037 0.00 0.00 0.00 3.51
6510 6960 7.460214 ACAATTCAGATAACTAATACCCCCA 57.540 36.000 0.00 0.00 0.00 4.96
6511 6961 8.218488 AGAACAATTCAGATAACTAATACCCCC 58.782 37.037 0.00 0.00 0.00 5.40
6518 6968 7.553334 ACGGCTAGAACAATTCAGATAACTAA 58.447 34.615 0.00 0.00 0.00 2.24
6520 6970 5.978814 ACGGCTAGAACAATTCAGATAACT 58.021 37.500 0.00 0.00 0.00 2.24
6521 6971 6.312918 TCAACGGCTAGAACAATTCAGATAAC 59.687 38.462 0.00 0.00 0.00 1.89
6522 6972 6.403049 TCAACGGCTAGAACAATTCAGATAA 58.597 36.000 0.00 0.00 0.00 1.75
6523 6973 5.972935 TCAACGGCTAGAACAATTCAGATA 58.027 37.500 0.00 0.00 0.00 1.98
6551 7093 7.921214 GCTAACACTCTGAATATGCTAACACTA 59.079 37.037 0.00 0.00 0.00 2.74
6552 7094 6.758886 GCTAACACTCTGAATATGCTAACACT 59.241 38.462 0.00 0.00 0.00 3.55
6553 7095 6.018669 GGCTAACACTCTGAATATGCTAACAC 60.019 42.308 0.00 0.00 0.00 3.32
6555 7097 6.049149 TGGCTAACACTCTGAATATGCTAAC 58.951 40.000 0.00 0.00 0.00 2.34
6556 7098 6.233905 TGGCTAACACTCTGAATATGCTAA 57.766 37.500 0.00 0.00 0.00 3.09
6557 7099 5.869649 TGGCTAACACTCTGAATATGCTA 57.130 39.130 0.00 0.00 0.00 3.49
6558 7100 4.760530 TGGCTAACACTCTGAATATGCT 57.239 40.909 0.00 0.00 0.00 3.79
6559 7101 5.059161 TCATGGCTAACACTCTGAATATGC 58.941 41.667 0.00 0.00 0.00 3.14
6560 7102 7.874528 TGTATCATGGCTAACACTCTGAATATG 59.125 37.037 0.00 0.00 0.00 1.78
6561 7103 7.875041 GTGTATCATGGCTAACACTCTGAATAT 59.125 37.037 11.19 0.00 39.27 1.28
6562 7104 7.210174 GTGTATCATGGCTAACACTCTGAATA 58.790 38.462 11.19 0.00 39.27 1.75
6563 7105 6.051717 GTGTATCATGGCTAACACTCTGAAT 58.948 40.000 11.19 0.00 39.27 2.57
6564 7106 5.419542 GTGTATCATGGCTAACACTCTGAA 58.580 41.667 11.19 0.00 39.27 3.02
6570 7112 9.088512 GCTATTATAGTGTATCATGGCTAACAC 57.911 37.037 0.94 10.74 41.97 3.32
6571 7113 8.811994 TGCTATTATAGTGTATCATGGCTAACA 58.188 33.333 0.94 0.00 30.47 2.41
6572 7114 9.823647 ATGCTATTATAGTGTATCATGGCTAAC 57.176 33.333 0.94 0.00 30.47 2.34
6574 7116 9.426534 AGATGCTATTATAGTGTATCATGGCTA 57.573 33.333 0.94 0.00 30.47 3.93
6575 7117 8.202811 CAGATGCTATTATAGTGTATCATGGCT 58.797 37.037 0.94 0.00 30.47 4.75
6576 7118 7.984050 ACAGATGCTATTATAGTGTATCATGGC 59.016 37.037 0.94 0.00 29.98 4.40
6577 7119 9.526713 GACAGATGCTATTATAGTGTATCATGG 57.473 37.037 0.94 1.71 0.00 3.66
6582 7124 9.973661 AGAGAGACAGATGCTATTATAGTGTAT 57.026 33.333 0.94 0.00 0.00 2.29
6583 7125 9.225436 CAGAGAGACAGATGCTATTATAGTGTA 57.775 37.037 0.94 0.00 0.00 2.90
6584 7126 7.723616 ACAGAGAGACAGATGCTATTATAGTGT 59.276 37.037 0.94 0.00 0.00 3.55
6585 7127 8.022550 CACAGAGAGACAGATGCTATTATAGTG 58.977 40.741 0.94 0.00 0.00 2.74
6586 7128 7.723616 ACACAGAGAGACAGATGCTATTATAGT 59.276 37.037 0.94 0.00 0.00 2.12
6587 7129 8.109705 ACACAGAGAGACAGATGCTATTATAG 57.890 38.462 0.00 0.00 0.00 1.31
6588 7130 7.095017 CGACACAGAGAGACAGATGCTATTATA 60.095 40.741 0.00 0.00 0.00 0.98
6591 7133 4.202000 CGACACAGAGAGACAGATGCTATT 60.202 45.833 0.00 0.00 0.00 1.73
6592 7134 3.314913 CGACACAGAGAGACAGATGCTAT 59.685 47.826 0.00 0.00 0.00 2.97
6594 7136 1.472082 CGACACAGAGAGACAGATGCT 59.528 52.381 0.00 0.00 0.00 3.79
6735 7443 2.097954 TGAGAAAAATGCATAGCGCCAG 59.902 45.455 2.29 0.00 41.33 4.85
7042 7751 9.139174 CTTTTGTCTTTTGCTAGAAACAGAAAA 57.861 29.630 0.61 0.00 0.00 2.29
7364 8073 9.983024 TCAATATAAGTTCAAAGGGATTAACCA 57.017 29.630 0.00 0.00 41.20 3.67
7537 8246 1.617850 TGCCACAAAATTCTTGCGGAT 59.382 42.857 9.96 0.00 0.00 4.18
7543 8252 2.293399 GACCTCGTGCCACAAAATTCTT 59.707 45.455 0.00 0.00 0.00 2.52
7559 8268 9.791820 CTAAGTAAGAGTTAAGCTTTAGACCTC 57.208 37.037 3.20 3.51 0.00 3.85
7561 8270 9.356433 CACTAAGTAAGAGTTAAGCTTTAGACC 57.644 37.037 3.20 0.00 0.00 3.85
7911 8620 6.183360 CCATGATATTTTAACGGAACAAGCCT 60.183 38.462 0.00 0.00 0.00 4.58
7936 8645 9.869844 GACAACATGCAAGTAATCATCTAATAC 57.130 33.333 0.00 0.00 0.00 1.89
7958 8667 7.767198 CACCTATTAATCCTTAACTTCGGACAA 59.233 37.037 0.00 0.00 30.90 3.18
8049 8758 5.255710 ACTGACAGTATCTCGAGGATTTG 57.744 43.478 13.56 9.19 35.98 2.32
8062 8771 8.201464 TCAAGACACAATTTAGAACTGACAGTA 58.799 33.333 8.91 0.00 0.00 2.74
8224 8933 3.694535 ACATCTTCTAGTACGAAGCCG 57.305 47.619 5.82 0.00 40.11 5.52
8227 8936 6.730175 AGTGCATACATCTTCTAGTACGAAG 58.270 40.000 0.00 4.60 41.32 3.79
8296 9005 4.051167 CTGCCCCCATCCTGCACA 62.051 66.667 0.00 0.00 0.00 4.57
8429 9142 1.774110 TCTTTGTTGGGCTGCAAGAA 58.226 45.000 0.50 0.00 34.07 2.52
8683 9396 2.300152 TCTAATAGAGAATGCGCAGGGG 59.700 50.000 18.32 0.00 0.00 4.79
8773 9489 0.927537 CGAGTGCCGATTCGCAAATA 59.072 50.000 0.00 0.00 41.30 1.40
8786 9502 4.783621 TGAGGCCCATGCGAGTGC 62.784 66.667 0.00 0.00 43.20 4.40
8816 9532 3.521560 GACGCAGATTACATCCTTCACA 58.478 45.455 0.00 0.00 0.00 3.58
8876 9592 3.515630 CAATCGCTCATACAGCCGATAT 58.484 45.455 0.00 0.00 46.74 1.63
8928 9644 9.662947 ACAGGTTAAGCTAAATAAACGACTATT 57.337 29.630 6.90 0.00 0.00 1.73
8935 9651 8.996271 ACACACTACAGGTTAAGCTAAATAAAC 58.004 33.333 6.90 0.00 0.00 2.01
8985 9784 0.323302 TAGCCGGCACTGTCATCAAA 59.677 50.000 31.54 0.00 0.00 2.69
9074 9877 4.270084 CACAACACTCGCTTTTTAGACTGA 59.730 41.667 0.00 0.00 0.00 3.41
9087 9890 6.360947 CGATCTTATTCCTATCACAACACTCG 59.639 42.308 0.00 0.00 0.00 4.18
9216 10116 6.607689 CGAGTTTGTAAAAATACAGCATGGA 58.392 36.000 0.00 0.00 43.62 3.41
9221 10121 5.164187 GCTTGCGAGTTTGTAAAAATACAGC 60.164 40.000 2.14 0.00 0.00 4.40
9222 10122 6.142817 AGCTTGCGAGTTTGTAAAAATACAG 58.857 36.000 2.14 0.00 0.00 2.74
9226 10126 7.995463 TTTAAGCTTGCGAGTTTGTAAAAAT 57.005 28.000 9.86 0.00 0.00 1.82
9227 10127 7.995463 ATTTAAGCTTGCGAGTTTGTAAAAA 57.005 28.000 9.86 6.08 0.00 1.94
9280 10181 5.479306 GGCCCTTTATTTTCCTTTTCAGTC 58.521 41.667 0.00 0.00 0.00 3.51
9305 10206 3.997021 CGAGTTCTTTTAGACCACAGCAT 59.003 43.478 0.00 0.00 0.00 3.79
9874 10783 2.249413 CTGTTCGGCCAGAGGAGCAT 62.249 60.000 2.24 0.00 34.23 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.