Multiple sequence alignment - TraesCS6D01G225100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G225100 chr6D 100.000 4571 0 0 1 4571 317003423 317007993 0.000000e+00 8442.0
1 TraesCS6D01G225100 chr6B 94.238 1319 49 11 2394 3697 507593782 507592476 0.000000e+00 1989.0
2 TraesCS6D01G225100 chr6B 92.929 1386 68 5 816 2192 507595345 507593981 0.000000e+00 1989.0
3 TraesCS6D01G225100 chr6B 94.514 875 26 11 3705 4571 507592371 507591511 0.000000e+00 1330.0
4 TraesCS6D01G225100 chr6B 94.901 353 13 5 464 813 507595773 507595423 8.650000e-152 547.0
5 TraesCS6D01G225100 chr6B 97.059 102 3 0 126 227 507595875 507595774 6.080000e-39 172.0
6 TraesCS6D01G225100 chr6A 91.588 1272 56 21 2672 3933 454648359 454649589 0.000000e+00 1709.0
7 TraesCS6D01G225100 chr6A 96.894 644 15 3 3931 4571 454649670 454650311 0.000000e+00 1074.0
8 TraesCS6D01G225100 chr6A 94.118 646 32 4 1567 2211 454647416 454648056 0.000000e+00 977.0
9 TraesCS6D01G225100 chr6A 91.014 690 49 5 816 1495 454646715 454647401 0.000000e+00 918.0
10 TraesCS6D01G225100 chr6A 94.203 69 4 0 2326 2394 454648291 454648359 6.250000e-19 106.0
11 TraesCS6D01G225100 chr6A 84.000 75 5 2 135 209 454646144 454646211 1.060000e-06 65.8
12 TraesCS6D01G225100 chr2A 77.191 890 172 18 2703 3572 642910332 642911210 1.480000e-134 490.0
13 TraesCS6D01G225100 chr2A 87.565 193 24 0 229 421 669425275 669425083 1.650000e-54 224.0
14 TraesCS6D01G225100 chr1B 86.480 429 48 8 3040 3460 416822586 416822160 3.220000e-126 462.0
15 TraesCS6D01G225100 chr1B 84.416 231 34 2 1946 2175 416823211 416822982 4.600000e-55 226.0
16 TraesCS6D01G225100 chr1B 78.328 323 66 4 1854 2174 246453962 246454282 5.990000e-49 206.0
17 TraesCS6D01G225100 chr1B 89.855 138 14 0 2707 2844 416822898 416822761 1.310000e-40 178.0
18 TraesCS6D01G225100 chr1B 90.411 73 5 2 16 88 436684913 436684843 1.350000e-15 95.3
19 TraesCS6D01G225100 chr1B 100.000 44 0 0 4528 4571 100146176 100146133 1.050000e-11 82.4
20 TraesCS6D01G225100 chr1B 84.615 78 10 2 3 80 35409707 35409632 4.900000e-10 76.8
21 TraesCS6D01G225100 chr1B 97.561 41 1 0 4525 4565 381314995 381315035 2.280000e-08 71.3
22 TraesCS6D01G225100 chr1A 86.480 429 48 8 3040 3460 387029217 387028791 3.220000e-126 462.0
23 TraesCS6D01G225100 chr1A 77.518 427 76 11 1768 2175 387030027 387029602 5.910000e-59 239.0
24 TraesCS6D01G225100 chr1A 88.265 196 23 0 226 421 304649980 304649785 7.650000e-58 235.0
25 TraesCS6D01G225100 chr1A 87.755 196 24 0 226 421 304488401 304488206 3.560000e-56 230.0
26 TraesCS6D01G225100 chr1A 78.438 320 65 4 1857 2174 186212305 186212622 5.990000e-49 206.0
27 TraesCS6D01G225100 chr1D 85.781 429 51 8 3040 3460 307832791 307832365 3.240000e-121 446.0
28 TraesCS6D01G225100 chr1D 78.019 414 71 11 1781 2175 307833593 307833181 4.570000e-60 243.0
29 TraesCS6D01G225100 chr1D 78.019 323 67 4 1854 2174 127503831 127504151 2.790000e-47 200.0
30 TraesCS6D01G225100 chr1D 86.391 169 20 2 2707 2875 307833100 307832935 1.010000e-41 182.0
31 TraesCS6D01G225100 chr1D 86.517 89 9 3 7 95 431510923 431511008 1.350000e-15 95.3
32 TraesCS6D01G225100 chr5D 87.465 359 39 6 3060 3415 505215988 505216343 4.260000e-110 409.0
33 TraesCS6D01G225100 chr5D 88.732 142 16 0 2703 2844 505215640 505215781 1.690000e-39 174.0
34 TraesCS6D01G225100 chr5B 87.430 358 41 4 3060 3415 635194924 635195279 4.260000e-110 409.0
35 TraesCS6D01G225100 chr5B 90.511 137 13 0 2708 2844 635194581 635194717 1.010000e-41 182.0
36 TraesCS6D01G225100 chr5A 86.313 358 45 4 3060 3415 632836833 632837188 1.990000e-103 387.0
37 TraesCS6D01G225100 chr5A 87.435 191 24 0 226 416 529164327 529164517 2.140000e-53 220.0
38 TraesCS6D01G225100 chr5A 89.781 137 14 0 2708 2844 632836475 632836611 4.700000e-40 176.0
39 TraesCS6D01G225100 chr5A 88.372 86 5 3 3 88 498174116 498174036 1.050000e-16 99.0
40 TraesCS6D01G225100 chr2B 89.286 196 21 0 226 421 341555858 341556053 3.530000e-61 246.0
41 TraesCS6D01G225100 chr2B 88.710 62 4 3 20 80 718593376 718593435 6.340000e-09 73.1
42 TraesCS6D01G225100 chr7A 88.265 196 23 0 226 421 57702414 57702219 7.650000e-58 235.0
43 TraesCS6D01G225100 chr7A 87.302 189 24 0 228 416 554556505 554556693 2.770000e-52 217.0
44 TraesCS6D01G225100 chr7A 87.952 166 18 2 226 390 4709406 4709570 1.300000e-45 195.0
45 TraesCS6D01G225100 chr7A 95.455 44 2 0 4528 4571 276741939 276741896 2.280000e-08 71.3
46 TraesCS6D01G225100 chr4D 89.744 156 16 0 226 381 425601866 425601711 2.790000e-47 200.0
47 TraesCS6D01G225100 chr4D 81.319 91 17 0 4354 4444 233096786 233096696 1.760000e-09 75.0
48 TraesCS6D01G225100 chr3D 87.417 151 16 2 2705 2855 88352213 88352360 2.190000e-38 171.0
49 TraesCS6D01G225100 chr3A 87.417 151 16 2 2705 2855 105112954 105112807 2.190000e-38 171.0
50 TraesCS6D01G225100 chr3B 79.126 206 31 10 1943 2142 137750033 137750232 1.030000e-26 132.0
51 TraesCS6D01G225100 chr4A 100.000 44 0 0 4528 4571 263739155 263739112 1.050000e-11 82.4
52 TraesCS6D01G225100 chr4A 81.319 91 17 0 4354 4444 363103946 363103856 1.760000e-09 75.0
53 TraesCS6D01G225100 chr4B 81.319 91 17 0 4354 4444 232108182 232108092 1.760000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G225100 chr6D 317003423 317007993 4570 False 8442.000000 8442 100.0000 1 4571 1 chr6D.!!$F1 4570
1 TraesCS6D01G225100 chr6B 507591511 507595875 4364 True 1205.400000 1989 94.7282 126 4571 5 chr6B.!!$R1 4445
2 TraesCS6D01G225100 chr6A 454646144 454650311 4167 False 808.300000 1709 91.9695 135 4571 6 chr6A.!!$F1 4436
3 TraesCS6D01G225100 chr2A 642910332 642911210 878 False 490.000000 490 77.1910 2703 3572 1 chr2A.!!$F1 869
4 TraesCS6D01G225100 chr1B 416822160 416823211 1051 True 288.666667 462 86.9170 1946 3460 3 chr1B.!!$R4 1514
5 TraesCS6D01G225100 chr1A 387028791 387030027 1236 True 350.500000 462 81.9990 1768 3460 2 chr1A.!!$R3 1692
6 TraesCS6D01G225100 chr1D 307832365 307833593 1228 True 290.333333 446 83.3970 1781 3460 3 chr1D.!!$R1 1679
7 TraesCS6D01G225100 chr5D 505215640 505216343 703 False 291.500000 409 88.0985 2703 3415 2 chr5D.!!$F1 712
8 TraesCS6D01G225100 chr5B 635194581 635195279 698 False 295.500000 409 88.9705 2708 3415 2 chr5B.!!$F1 707
9 TraesCS6D01G225100 chr5A 632836475 632837188 713 False 281.500000 387 88.0470 2708 3415 2 chr5A.!!$F2 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
233 244 0.313672 CTCCTCGCATCAGGCTAGTC 59.686 60.0 0.0 0.0 41.67 2.59 F
234 245 0.395724 TCCTCGCATCAGGCTAGTCA 60.396 55.0 0.0 0.0 41.67 3.41 F
1390 1547 0.323629 GACGGATGTGAAGAACCCCA 59.676 55.0 0.0 0.0 0.00 4.96 F
2498 2837 0.179073 CCACGGATCAGGACACATCC 60.179 60.0 0.0 0.0 46.69 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1371 1516 0.323629 TGGGGTTCTTCACATCCGTC 59.676 55.0 0.00 0.0 0.00 4.79 R
1392 1549 0.457851 CTTCAACCAAACCAACCGCA 59.542 50.0 0.00 0.0 0.00 5.69 R
2532 2871 0.244450 CATGCTCGGTTGTTTGCCAT 59.756 50.0 0.00 0.0 0.00 4.40 R
4009 4667 0.101579 TGACGAAATCGCGGCTGATA 59.898 50.0 6.13 0.0 44.43 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 2.642154 TTTTTCTAACCAGGTGCGGA 57.358 45.000 0.00 0.00 0.00 5.54
60 61 2.871096 TTTTCTAACCAGGTGCGGAT 57.129 45.000 0.00 0.00 0.00 4.18
61 62 2.107950 TTTCTAACCAGGTGCGGATG 57.892 50.000 0.00 0.00 0.00 3.51
62 63 1.271856 TTCTAACCAGGTGCGGATGA 58.728 50.000 0.00 0.00 0.00 2.92
63 64 0.824109 TCTAACCAGGTGCGGATGAG 59.176 55.000 0.00 0.00 0.00 2.90
64 65 0.811616 CTAACCAGGTGCGGATGAGC 60.812 60.000 0.00 0.00 37.71 4.26
65 66 2.252072 TAACCAGGTGCGGATGAGCC 62.252 60.000 0.00 0.00 36.02 4.70
66 67 3.790437 CCAGGTGCGGATGAGCCT 61.790 66.667 0.00 0.00 36.02 4.58
67 68 2.513204 CAGGTGCGGATGAGCCTG 60.513 66.667 0.00 0.00 41.89 4.85
68 69 3.790437 AGGTGCGGATGAGCCTGG 61.790 66.667 0.00 0.00 36.02 4.45
69 70 4.864334 GGTGCGGATGAGCCTGGG 62.864 72.222 0.00 0.00 36.02 4.45
84 85 2.658422 GGGCACCGAAACGACCTA 59.342 61.111 0.00 0.00 40.86 3.08
85 86 1.739196 GGGCACCGAAACGACCTAC 60.739 63.158 0.00 0.00 40.86 3.18
86 87 1.291272 GGCACCGAAACGACCTACT 59.709 57.895 0.00 0.00 0.00 2.57
87 88 0.735287 GGCACCGAAACGACCTACTC 60.735 60.000 0.00 0.00 0.00 2.59
97 98 2.539346 CGACCTACTCGTCAAATCGT 57.461 50.000 0.00 0.00 37.64 3.73
98 99 2.438583 CGACCTACTCGTCAAATCGTC 58.561 52.381 0.00 0.00 37.64 4.20
99 100 2.790468 CGACCTACTCGTCAAATCGTCC 60.790 54.545 0.00 0.00 37.64 4.79
100 101 1.475682 ACCTACTCGTCAAATCGTCCC 59.524 52.381 0.00 0.00 0.00 4.46
101 102 1.749634 CCTACTCGTCAAATCGTCCCT 59.250 52.381 0.00 0.00 0.00 4.20
102 103 2.947652 CCTACTCGTCAAATCGTCCCTA 59.052 50.000 0.00 0.00 0.00 3.53
103 104 3.568853 CCTACTCGTCAAATCGTCCCTAT 59.431 47.826 0.00 0.00 0.00 2.57
104 105 4.037684 CCTACTCGTCAAATCGTCCCTATT 59.962 45.833 0.00 0.00 0.00 1.73
105 106 4.467198 ACTCGTCAAATCGTCCCTATTT 57.533 40.909 0.00 0.00 0.00 1.40
106 107 4.828829 ACTCGTCAAATCGTCCCTATTTT 58.171 39.130 0.00 0.00 0.00 1.82
107 108 5.969423 ACTCGTCAAATCGTCCCTATTTTA 58.031 37.500 0.00 0.00 0.00 1.52
108 109 6.040878 ACTCGTCAAATCGTCCCTATTTTAG 58.959 40.000 0.00 0.00 0.00 1.85
109 110 4.807304 TCGTCAAATCGTCCCTATTTTAGC 59.193 41.667 0.00 0.00 0.00 3.09
110 111 4.809426 CGTCAAATCGTCCCTATTTTAGCT 59.191 41.667 0.00 0.00 0.00 3.32
111 112 5.276868 CGTCAAATCGTCCCTATTTTAGCTG 60.277 44.000 0.00 0.00 0.00 4.24
112 113 5.815740 GTCAAATCGTCCCTATTTTAGCTGA 59.184 40.000 0.00 0.00 0.00 4.26
113 114 6.315393 GTCAAATCGTCCCTATTTTAGCTGAA 59.685 38.462 0.00 0.00 0.00 3.02
114 115 6.882140 TCAAATCGTCCCTATTTTAGCTGAAA 59.118 34.615 6.09 6.09 0.00 2.69
115 116 7.556275 TCAAATCGTCCCTATTTTAGCTGAAAT 59.444 33.333 19.09 19.09 33.95 2.17
116 117 8.836413 CAAATCGTCCCTATTTTAGCTGAAATA 58.164 33.333 19.26 19.26 31.96 1.40
117 118 8.608844 AATCGTCCCTATTTTAGCTGAAATAG 57.391 34.615 30.36 30.36 43.98 1.73
185 186 0.462225 TTTTCCGTGCCACTTCGACA 60.462 50.000 0.00 0.00 0.00 4.35
228 239 2.280052 GCTCTCCTCGCATCAGGC 60.280 66.667 0.00 0.00 39.90 4.85
229 240 2.795110 GCTCTCCTCGCATCAGGCT 61.795 63.158 0.00 0.00 41.67 4.58
233 244 0.313672 CTCCTCGCATCAGGCTAGTC 59.686 60.000 0.00 0.00 41.67 2.59
234 245 0.395724 TCCTCGCATCAGGCTAGTCA 60.396 55.000 0.00 0.00 41.67 3.41
235 246 0.678395 CCTCGCATCAGGCTAGTCAT 59.322 55.000 0.00 0.00 41.67 3.06
236 247 1.889170 CCTCGCATCAGGCTAGTCATA 59.111 52.381 0.00 0.00 41.67 2.15
238 249 2.556189 CTCGCATCAGGCTAGTCATAGT 59.444 50.000 0.00 0.00 41.67 2.12
239 250 2.294512 TCGCATCAGGCTAGTCATAGTG 59.705 50.000 0.00 0.00 41.67 2.74
240 251 2.608998 CGCATCAGGCTAGTCATAGTGG 60.609 54.545 0.00 0.00 41.67 4.00
241 252 2.289320 GCATCAGGCTAGTCATAGTGGG 60.289 54.545 0.00 0.00 40.25 4.61
242 253 3.234353 CATCAGGCTAGTCATAGTGGGA 58.766 50.000 0.00 0.00 0.00 4.37
243 254 2.950781 TCAGGCTAGTCATAGTGGGAG 58.049 52.381 0.00 0.00 0.00 4.30
244 255 2.245028 TCAGGCTAGTCATAGTGGGAGT 59.755 50.000 0.00 0.00 0.00 3.85
245 256 3.462205 TCAGGCTAGTCATAGTGGGAGTA 59.538 47.826 0.00 0.00 0.00 2.59
247 258 4.038162 CAGGCTAGTCATAGTGGGAGTAAC 59.962 50.000 0.00 0.00 0.00 2.50
248 259 4.079096 AGGCTAGTCATAGTGGGAGTAACT 60.079 45.833 0.00 0.00 0.00 2.24
249 260 4.650131 GGCTAGTCATAGTGGGAGTAACTT 59.350 45.833 0.00 0.00 0.00 2.66
255 266 6.773685 AGTCATAGTGGGAGTAACTTAGCTAG 59.226 42.308 0.00 0.00 0.00 3.42
257 268 7.718753 GTCATAGTGGGAGTAACTTAGCTAGTA 59.281 40.741 0.00 0.00 35.54 1.82
259 270 9.080097 CATAGTGGGAGTAACTTAGCTAGTAAT 57.920 37.037 0.00 0.00 35.54 1.89
276 287 8.516811 GCTAGTAATATAGCGCACTTTAAGAA 57.483 34.615 11.47 0.00 38.90 2.52
277 288 8.975439 GCTAGTAATATAGCGCACTTTAAGAAA 58.025 33.333 11.47 0.00 38.90 2.52
284 295 5.328886 AGCGCACTTTAAGAAAATTTTGC 57.671 34.783 11.47 2.64 0.00 3.68
285 296 5.049828 AGCGCACTTTAAGAAAATTTTGCT 58.950 33.333 11.47 3.82 0.00 3.91
286 297 5.523552 AGCGCACTTTAAGAAAATTTTGCTT 59.476 32.000 11.47 13.00 0.00 3.91
287 298 6.699642 AGCGCACTTTAAGAAAATTTTGCTTA 59.300 30.769 11.47 12.10 0.00 3.09
288 299 7.384932 AGCGCACTTTAAGAAAATTTTGCTTAT 59.615 29.630 11.47 0.05 0.00 1.73
289 300 8.009409 GCGCACTTTAAGAAAATTTTGCTTATT 58.991 29.630 8.47 0.00 0.00 1.40
290 301 9.862585 CGCACTTTAAGAAAATTTTGCTTATTT 57.137 25.926 8.47 2.05 0.00 1.40
295 306 9.943163 TTTAAGAAAATTTTGCTTATTTGGCAC 57.057 25.926 8.47 0.00 39.55 5.01
296 307 6.226988 AGAAAATTTTGCTTATTTGGCACG 57.773 33.333 8.47 0.00 39.55 5.34
297 308 5.757808 AGAAAATTTTGCTTATTTGGCACGT 59.242 32.000 8.47 0.00 39.55 4.49
298 309 6.926272 AGAAAATTTTGCTTATTTGGCACGTA 59.074 30.769 8.47 0.00 39.55 3.57
299 310 6.704512 AAATTTTGCTTATTTGGCACGTAG 57.295 33.333 0.00 0.00 39.55 3.51
301 312 4.839668 TTTGCTTATTTGGCACGTAGTT 57.160 36.364 0.00 0.00 41.61 2.24
302 313 5.943706 TTTGCTTATTTGGCACGTAGTTA 57.056 34.783 0.00 0.00 41.61 2.24
303 314 5.943706 TTGCTTATTTGGCACGTAGTTAA 57.056 34.783 0.00 0.00 41.61 2.01
304 315 6.503589 TTGCTTATTTGGCACGTAGTTAAT 57.496 33.333 0.00 0.00 41.61 1.40
305 316 5.874831 TGCTTATTTGGCACGTAGTTAATG 58.125 37.500 0.00 0.00 41.61 1.90
306 317 5.644206 TGCTTATTTGGCACGTAGTTAATGA 59.356 36.000 0.00 0.00 41.61 2.57
307 318 6.183360 TGCTTATTTGGCACGTAGTTAATGAG 60.183 38.462 0.00 0.00 41.61 2.90
308 319 6.036735 GCTTATTTGGCACGTAGTTAATGAGA 59.963 38.462 0.00 0.00 41.61 3.27
309 320 7.413657 GCTTATTTGGCACGTAGTTAATGAGAA 60.414 37.037 0.00 0.00 41.61 2.87
310 321 5.856126 TTTGGCACGTAGTTAATGAGAAG 57.144 39.130 0.00 0.00 41.61 2.85
311 322 4.530710 TGGCACGTAGTTAATGAGAAGT 57.469 40.909 0.00 0.00 41.61 3.01
312 323 4.242475 TGGCACGTAGTTAATGAGAAGTG 58.758 43.478 0.00 0.00 41.61 3.16
313 324 3.617263 GGCACGTAGTTAATGAGAAGTGG 59.383 47.826 0.00 0.00 41.61 4.00
314 325 4.243270 GCACGTAGTTAATGAGAAGTGGT 58.757 43.478 0.00 0.00 41.61 4.16
315 326 5.404946 GCACGTAGTTAATGAGAAGTGGTA 58.595 41.667 0.00 0.00 41.61 3.25
316 327 5.865552 GCACGTAGTTAATGAGAAGTGGTAA 59.134 40.000 0.00 0.00 41.61 2.85
317 328 6.183360 GCACGTAGTTAATGAGAAGTGGTAAC 60.183 42.308 0.00 0.00 41.61 2.50
318 329 6.864685 CACGTAGTTAATGAGAAGTGGTAACA 59.135 38.462 0.00 0.00 44.43 2.41
330 341 2.772077 TGGTAACATAGCGCTTTCCA 57.228 45.000 18.68 8.34 46.17 3.53
331 342 3.060736 TGGTAACATAGCGCTTTCCAA 57.939 42.857 18.68 0.00 46.17 3.53
332 343 3.006940 TGGTAACATAGCGCTTTCCAAG 58.993 45.455 18.68 0.00 46.17 3.61
333 344 3.267483 GGTAACATAGCGCTTTCCAAGA 58.733 45.455 18.68 0.00 0.00 3.02
334 345 3.063588 GGTAACATAGCGCTTTCCAAGAC 59.936 47.826 18.68 5.61 0.00 3.01
335 346 2.472695 ACATAGCGCTTTCCAAGACA 57.527 45.000 18.68 0.00 0.00 3.41
336 347 2.778299 ACATAGCGCTTTCCAAGACAA 58.222 42.857 18.68 0.00 0.00 3.18
337 348 2.744202 ACATAGCGCTTTCCAAGACAAG 59.256 45.455 18.68 0.00 0.00 3.16
338 349 2.831685 TAGCGCTTTCCAAGACAAGA 57.168 45.000 18.68 0.00 0.00 3.02
339 350 2.191128 AGCGCTTTCCAAGACAAGAT 57.809 45.000 2.64 0.00 0.00 2.40
340 351 1.808945 AGCGCTTTCCAAGACAAGATG 59.191 47.619 2.64 0.00 0.00 2.90
341 352 1.806542 GCGCTTTCCAAGACAAGATGA 59.193 47.619 0.00 0.00 0.00 2.92
342 353 2.159599 GCGCTTTCCAAGACAAGATGAG 60.160 50.000 0.00 0.00 0.00 2.90
343 354 3.070018 CGCTTTCCAAGACAAGATGAGT 58.930 45.455 0.00 0.00 0.00 3.41
344 355 3.124297 CGCTTTCCAAGACAAGATGAGTC 59.876 47.826 0.00 0.00 36.26 3.36
346 357 5.482908 GCTTTCCAAGACAAGATGAGTCTA 58.517 41.667 0.00 0.00 45.11 2.59
347 358 5.350091 GCTTTCCAAGACAAGATGAGTCTAC 59.650 44.000 0.00 0.00 45.11 2.59
348 359 6.419484 TTTCCAAGACAAGATGAGTCTACA 57.581 37.500 0.00 0.00 45.11 2.74
349 360 6.419484 TTCCAAGACAAGATGAGTCTACAA 57.581 37.500 0.00 0.00 45.11 2.41
350 361 6.030548 TCCAAGACAAGATGAGTCTACAAG 57.969 41.667 0.00 0.00 45.11 3.16
351 362 4.629200 CCAAGACAAGATGAGTCTACAAGC 59.371 45.833 0.00 0.00 45.11 4.01
352 363 5.477510 CAAGACAAGATGAGTCTACAAGCT 58.522 41.667 0.00 0.00 45.11 3.74
353 364 6.350528 CCAAGACAAGATGAGTCTACAAGCTA 60.351 42.308 0.00 0.00 45.11 3.32
354 365 6.842437 AGACAAGATGAGTCTACAAGCTAA 57.158 37.500 0.00 0.00 44.10 3.09
355 366 7.416964 AGACAAGATGAGTCTACAAGCTAAT 57.583 36.000 0.00 0.00 44.10 1.73
356 367 8.526667 AGACAAGATGAGTCTACAAGCTAATA 57.473 34.615 0.00 0.00 44.10 0.98
357 368 8.972127 AGACAAGATGAGTCTACAAGCTAATAA 58.028 33.333 0.00 0.00 44.10 1.40
358 369 9.587772 GACAAGATGAGTCTACAAGCTAATAAA 57.412 33.333 0.00 0.00 33.30 1.40
365 376 9.944376 TGAGTCTACAAGCTAATAAATGAAGTT 57.056 29.630 0.00 0.00 0.00 2.66
383 394 9.469097 AATGAAGTTCTCTATGACACTACTACT 57.531 33.333 4.17 0.00 0.00 2.57
387 398 9.908747 AAGTTCTCTATGACACTACTACTATGT 57.091 33.333 0.00 0.00 0.00 2.29
388 399 9.908747 AGTTCTCTATGACACTACTACTATGTT 57.091 33.333 0.00 0.00 0.00 2.71
449 460 8.999905 TTTTATTTTAAGTTACTCCCCAGTGT 57.000 30.769 0.00 0.00 33.62 3.55
450 461 7.989416 TTATTTTAAGTTACTCCCCAGTGTG 57.011 36.000 0.00 0.00 33.62 3.82
451 462 5.633655 TTTTAAGTTACTCCCCAGTGTGA 57.366 39.130 0.00 0.00 33.62 3.58
452 463 4.612264 TTAAGTTACTCCCCAGTGTGAC 57.388 45.455 0.00 0.00 33.62 3.67
453 464 1.349067 AGTTACTCCCCAGTGTGACC 58.651 55.000 0.00 0.00 33.62 4.02
454 465 1.053424 GTTACTCCCCAGTGTGACCA 58.947 55.000 0.00 0.00 33.62 4.02
455 466 1.002087 GTTACTCCCCAGTGTGACCAG 59.998 57.143 0.00 0.00 33.62 4.00
456 467 1.192146 TACTCCCCAGTGTGACCAGC 61.192 60.000 0.00 0.00 33.62 4.85
457 468 3.249189 TCCCCAGTGTGACCAGCC 61.249 66.667 0.00 0.00 0.00 4.85
458 469 3.252284 CCCCAGTGTGACCAGCCT 61.252 66.667 0.00 0.00 0.00 4.58
459 470 2.348998 CCCAGTGTGACCAGCCTC 59.651 66.667 0.00 0.00 0.00 4.70
460 471 2.519622 CCCAGTGTGACCAGCCTCA 61.520 63.158 0.00 0.00 0.00 3.86
461 472 1.302033 CCAGTGTGACCAGCCTCAC 60.302 63.158 0.78 0.78 40.98 3.51
462 473 1.302033 CAGTGTGACCAGCCTCACC 60.302 63.158 4.74 0.00 40.02 4.02
565 576 9.803315 GGGATCTCCATTTTAGTTGTTTATTTC 57.197 33.333 0.00 0.00 37.91 2.17
628 641 1.398595 CGTTTCTTTGCTTGCCTTCG 58.601 50.000 0.00 0.00 0.00 3.79
725 773 0.528684 GAAGGACTTCCGGATGCTCG 60.529 60.000 16.84 0.90 42.08 5.03
741 789 2.105134 TGCTCGGGGTTGAAGAAACTTA 59.895 45.455 0.00 0.00 38.92 2.24
747 795 4.072839 GGGGTTGAAGAAACTTAGTCCTG 58.927 47.826 0.00 0.00 38.92 3.86
751 799 7.166167 GGGTTGAAGAAACTTAGTCCTGATTA 58.834 38.462 0.00 0.00 38.92 1.75
753 801 8.095169 GGTTGAAGAAACTTAGTCCTGATTAGA 58.905 37.037 0.00 0.00 38.92 2.10
754 802 9.660180 GTTGAAGAAACTTAGTCCTGATTAGAT 57.340 33.333 0.00 0.00 35.75 1.98
756 804 8.816894 TGAAGAAACTTAGTCCTGATTAGATGT 58.183 33.333 0.00 0.00 0.00 3.06
757 805 9.660180 GAAGAAACTTAGTCCTGATTAGATGTT 57.340 33.333 0.00 0.00 0.00 2.71
814 867 1.446907 CACTAAGCTGCTTCCTGTGG 58.553 55.000 19.62 0.00 0.00 4.17
848 980 0.886563 AGCCATTTCAAGTGCAGAGC 59.113 50.000 0.00 0.00 0.00 4.09
877 1018 3.632855 CTTCTGGAGCTTTGTTTGGTC 57.367 47.619 0.00 0.00 0.00 4.02
881 1022 0.961753 GGAGCTTTGTTTGGTCCCAG 59.038 55.000 0.00 0.00 43.90 4.45
901 1043 6.272090 TCCCAGGAAAATTAGAAGGCAAAAAT 59.728 34.615 0.00 0.00 0.00 1.82
934 1076 7.148540 CCGAGTTTTAATCCTGTCGATTGTTTA 60.149 37.037 0.00 0.00 41.47 2.01
936 1078 9.326339 GAGTTTTAATCCTGTCGATTGTTTAAC 57.674 33.333 0.00 0.00 41.47 2.01
945 1087 3.849708 GTCGATTGTTTAACGAATTGCCC 59.150 43.478 0.00 0.00 37.77 5.36
1053 1195 4.335647 CCTTCGGTGGCCACTGCT 62.336 66.667 35.80 0.00 37.60 4.24
1088 1230 1.742761 TTAGAGTTGCCAGCATCAGC 58.257 50.000 3.71 0.00 42.56 4.26
1156 1298 2.240162 GAAGGACCCGTCGGCAGAAT 62.240 60.000 5.50 0.00 0.00 2.40
1157 1299 1.838073 AAGGACCCGTCGGCAGAATT 61.838 55.000 5.50 0.00 0.00 2.17
1208 1350 3.399181 GTCGGATGAGGGTGGCCA 61.399 66.667 0.00 0.00 0.00 5.36
1209 1351 2.609299 TCGGATGAGGGTGGCCAA 60.609 61.111 7.24 0.00 0.00 4.52
1356 1501 0.400213 AAGCACCGTCCATGGAAGAA 59.600 50.000 27.02 0.00 0.00 2.52
1380 1537 1.447663 TGTCCATGCGACGGATGTG 60.448 57.895 24.89 17.09 45.23 3.21
1381 1538 1.153647 GTCCATGCGACGGATGTGA 60.154 57.895 24.89 18.81 34.32 3.58
1382 1539 0.739462 GTCCATGCGACGGATGTGAA 60.739 55.000 24.89 9.81 34.32 3.18
1383 1540 0.460109 TCCATGCGACGGATGTGAAG 60.460 55.000 24.89 11.82 0.00 3.02
1384 1541 0.460109 CCATGCGACGGATGTGAAGA 60.460 55.000 24.89 0.00 0.00 2.87
1385 1542 1.358877 CATGCGACGGATGTGAAGAA 58.641 50.000 19.91 0.00 0.00 2.52
1386 1543 1.061131 CATGCGACGGATGTGAAGAAC 59.939 52.381 19.91 0.00 0.00 3.01
1387 1544 0.669318 TGCGACGGATGTGAAGAACC 60.669 55.000 0.00 0.00 0.00 3.62
1388 1545 1.359459 GCGACGGATGTGAAGAACCC 61.359 60.000 0.00 0.00 0.00 4.11
1389 1546 0.739813 CGACGGATGTGAAGAACCCC 60.740 60.000 0.00 0.00 0.00 4.95
1390 1547 0.323629 GACGGATGTGAAGAACCCCA 59.676 55.000 0.00 0.00 0.00 4.96
1391 1548 0.768622 ACGGATGTGAAGAACCCCAA 59.231 50.000 0.00 0.00 0.00 4.12
1392 1549 1.354368 ACGGATGTGAAGAACCCCAAT 59.646 47.619 0.00 0.00 0.00 3.16
1393 1550 1.745087 CGGATGTGAAGAACCCCAATG 59.255 52.381 0.00 0.00 0.00 2.82
1394 1551 1.478105 GGATGTGAAGAACCCCAATGC 59.522 52.381 0.00 0.00 0.00 3.56
1500 1657 1.215647 GGAGAAGGATCGCGTGTGT 59.784 57.895 5.77 0.00 0.00 3.72
1518 1675 3.493303 GGTGCATCCCTCCCTCCC 61.493 72.222 0.00 0.00 0.00 4.30
1519 1676 3.866582 GTGCATCCCTCCCTCCCG 61.867 72.222 0.00 0.00 0.00 5.14
1536 1693 2.036256 GGTGGCAATGGCAGTCCT 59.964 61.111 10.55 0.00 43.71 3.85
1539 1696 1.303561 TGGCAATGGCAGTCCTCAC 60.304 57.895 5.05 0.00 43.71 3.51
1576 1733 2.280797 GTGTCCTCGCTGCCACAA 60.281 61.111 0.00 0.00 0.00 3.33
1610 1767 2.877396 GCACAAGCACAAGCAGAAC 58.123 52.632 0.00 0.00 45.49 3.01
1941 2116 2.430367 GGGACGAGGTGCCACTTT 59.570 61.111 1.09 0.00 43.66 2.66
2037 2212 4.087892 CAGCTCCTGGACCACCCG 62.088 72.222 0.00 0.00 37.93 5.28
2189 2365 3.495100 GCGAGGTAATCATCCATGTTCCT 60.495 47.826 0.00 0.00 0.00 3.36
2192 2368 4.785301 AGGTAATCATCCATGTTCCTGTG 58.215 43.478 0.00 0.00 0.00 3.66
2196 2372 6.205464 GGTAATCATCCATGTTCCTGTGTATG 59.795 42.308 0.00 0.00 0.00 2.39
2197 2373 4.155063 TCATCCATGTTCCTGTGTATGG 57.845 45.455 0.00 0.00 41.09 2.74
2200 2376 4.220693 TCCATGTTCCTGTGTATGGAAG 57.779 45.455 0.00 0.00 44.38 3.46
2202 2378 4.780554 TCCATGTTCCTGTGTATGGAAGTA 59.219 41.667 0.00 0.00 44.38 2.24
2204 2380 5.528690 CCATGTTCCTGTGTATGGAAGTATG 59.471 44.000 0.00 0.00 43.37 2.39
2206 2382 6.860790 TGTTCCTGTGTATGGAAGTATGTA 57.139 37.500 0.00 0.00 43.37 2.29
2258 2469 6.640499 CGTGTGCTCTTTAATTTTGGAATTCA 59.360 34.615 7.93 0.00 36.82 2.57
2313 2527 9.528018 TGCTTAAACATCCTTTAGTTTTGAAAG 57.472 29.630 0.00 0.00 38.71 2.62
2327 2644 9.688592 TTAGTTTTGAAAGTAGTAGTACTCTGC 57.311 33.333 10.69 0.42 38.66 4.26
2331 2648 6.512342 TGAAAGTAGTAGTACTCTGCCTTC 57.488 41.667 10.69 10.48 38.66 3.46
2342 2659 7.856145 AGTACTCTGCCTTCATCAAAATAAG 57.144 36.000 0.00 0.00 0.00 1.73
2396 2723 7.379750 GGAGAAACAGAAGTTCAGTACAGTAT 58.620 38.462 5.50 0.00 36.84 2.12
2436 2775 8.039603 TGCTGAAAACAGTACAGTATTTATGG 57.960 34.615 0.00 0.00 34.60 2.74
2486 2825 1.439228 CACTGCGATCTCCACGGAT 59.561 57.895 0.00 0.00 0.00 4.18
2498 2837 0.179073 CCACGGATCAGGACACATCC 60.179 60.000 0.00 0.00 46.69 3.51
2520 2859 7.748691 TCCGTGCATATATAGTACAGTTACA 57.251 36.000 0.00 0.00 0.00 2.41
2527 2866 9.639601 GCATATATAGTACAGTTACAGCATGAA 57.360 33.333 0.00 0.00 39.69 2.57
2532 2871 2.849942 ACAGTTACAGCATGAACAGCA 58.150 42.857 0.00 0.00 39.69 4.41
2545 2884 0.249405 AACAGCATGGCAAACAACCG 60.249 50.000 0.00 0.00 43.62 4.44
2569 2908 6.347079 CGAGCATGCTCAATTTTGTTTCAATT 60.347 34.615 38.97 5.81 42.86 2.32
2583 2922 7.462109 TTGTTTCAATTCACAGTTACAATGC 57.538 32.000 0.00 0.00 0.00 3.56
2584 2923 6.804677 TGTTTCAATTCACAGTTACAATGCT 58.195 32.000 0.00 0.00 0.00 3.79
2585 2924 7.935520 TGTTTCAATTCACAGTTACAATGCTA 58.064 30.769 0.00 0.00 0.00 3.49
2586 2925 8.575589 TGTTTCAATTCACAGTTACAATGCTAT 58.424 29.630 0.00 0.00 0.00 2.97
2587 2926 8.853345 GTTTCAATTCACAGTTACAATGCTATG 58.147 33.333 0.00 0.00 0.00 2.23
2650 2996 7.226441 AGTACTGATCATATTGCCATTAAGCA 58.774 34.615 0.00 0.00 42.17 3.91
2661 3007 3.193267 TGCCATTAAGCAACACTGGATTC 59.807 43.478 0.00 0.00 40.56 2.52
2663 3009 4.439289 GCCATTAAGCAACACTGGATTCTC 60.439 45.833 0.00 0.00 0.00 2.87
2766 3141 2.361610 CACATGCTGGGGGTGGTC 60.362 66.667 0.00 0.00 0.00 4.02
3011 3410 2.249413 CTGTTCGGCCAGAGGAGCAT 62.249 60.000 2.24 0.00 34.23 3.79
3580 4053 3.997021 CGAGTTCTTTTAGACCACAGCAT 59.003 43.478 0.00 0.00 0.00 3.79
3605 4078 5.479306 GGCCCTTTATTTTCCTTTTCAGTC 58.521 41.667 0.00 0.00 0.00 3.51
3655 4128 7.588488 GTGTTATTTAAGCTTGCGAGTTTGTAA 59.412 33.333 9.86 7.63 0.00 2.41
3659 4132 7.995463 TTTAAGCTTGCGAGTTTGTAAAAAT 57.005 28.000 9.86 0.00 0.00 1.82
3661 4134 6.986424 AAGCTTGCGAGTTTGTAAAAATAC 57.014 33.333 0.00 0.00 0.00 1.89
3662 4135 6.067263 AGCTTGCGAGTTTGTAAAAATACA 57.933 33.333 2.14 0.00 0.00 2.29
3663 4136 6.142817 AGCTTGCGAGTTTGTAAAAATACAG 58.857 36.000 2.14 0.00 0.00 2.74
3669 4143 6.607689 CGAGTTTGTAAAAATACAGCATGGA 58.392 36.000 0.00 0.00 43.62 3.41
3798 4369 6.360947 CGATCTTATTCCTATCACAACACTCG 59.639 42.308 0.00 0.00 0.00 4.18
3811 4382 4.270084 CACAACACTCGCTTTTTAGACTGA 59.730 41.667 0.00 0.00 0.00 3.41
3900 4471 0.323302 TAGCCGGCACTGTCATCAAA 59.677 50.000 31.54 0.00 0.00 2.69
3950 4608 8.996271 ACACACTACAGGTTAAGCTAAATAAAC 58.004 33.333 6.90 0.00 0.00 2.01
3957 4615 9.662947 ACAGGTTAAGCTAAATAAACGACTATT 57.337 29.630 6.90 0.00 0.00 1.73
4009 4667 3.515630 CAATCGCTCATACAGCCGATAT 58.484 45.455 0.00 0.00 46.74 1.63
4069 4727 3.521560 GACGCAGATTACATCCTTCACA 58.478 45.455 0.00 0.00 0.00 3.58
4099 4757 4.783621 TGAGGCCCATGCGAGTGC 62.784 66.667 0.00 0.00 43.20 4.40
4112 4770 0.927537 CGAGTGCCGATTCGCAAATA 59.072 50.000 0.00 0.00 41.30 1.40
4197 4858 4.806247 ACAACACTCTAATAGAGAATGCGC 59.194 41.667 22.83 0.00 45.07 6.09
4202 4863 2.300152 TCTAATAGAGAATGCGCAGGGG 59.700 50.000 18.32 0.00 0.00 4.79
4456 5117 1.774110 TCTTTGTTGGGCTGCAAGAA 58.226 45.000 0.50 0.00 34.07 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.642154 TCCGCACCTGGTTAGAAAAA 57.358 45.000 0.00 0.00 0.00 1.94
41 42 2.039216 TCATCCGCACCTGGTTAGAAAA 59.961 45.455 0.00 0.00 0.00 2.29
42 43 1.626321 TCATCCGCACCTGGTTAGAAA 59.374 47.619 0.00 0.00 0.00 2.52
43 44 1.207089 CTCATCCGCACCTGGTTAGAA 59.793 52.381 0.00 0.00 0.00 2.10
44 45 0.824109 CTCATCCGCACCTGGTTAGA 59.176 55.000 0.00 0.00 0.00 2.10
45 46 0.811616 GCTCATCCGCACCTGGTTAG 60.812 60.000 0.00 0.00 0.00 2.34
46 47 1.220749 GCTCATCCGCACCTGGTTA 59.779 57.895 0.00 0.00 0.00 2.85
47 48 2.045926 GCTCATCCGCACCTGGTT 60.046 61.111 0.00 0.00 0.00 3.67
48 49 4.101448 GGCTCATCCGCACCTGGT 62.101 66.667 0.00 0.00 0.00 4.00
49 50 3.790437 AGGCTCATCCGCACCTGG 61.790 66.667 0.00 0.00 40.77 4.45
50 51 2.513204 CAGGCTCATCCGCACCTG 60.513 66.667 0.00 0.00 43.45 4.00
51 52 3.790437 CCAGGCTCATCCGCACCT 61.790 66.667 0.00 0.00 40.77 4.00
52 53 4.864334 CCCAGGCTCATCCGCACC 62.864 72.222 0.00 0.00 40.77 5.01
56 57 4.864334 GGTGCCCAGGCTCATCCG 62.864 72.222 10.58 0.00 42.51 4.18
57 58 4.864334 CGGTGCCCAGGCTCATCC 62.864 72.222 10.58 6.48 42.51 3.51
58 59 2.819984 TTTCGGTGCCCAGGCTCATC 62.820 60.000 10.58 0.00 42.51 2.92
59 60 2.905996 TTTCGGTGCCCAGGCTCAT 61.906 57.895 10.58 0.00 42.51 2.90
60 61 3.565214 TTTCGGTGCCCAGGCTCA 61.565 61.111 10.58 0.00 42.51 4.26
61 62 3.056328 GTTTCGGTGCCCAGGCTC 61.056 66.667 10.58 6.18 42.51 4.70
64 65 3.047877 GTCGTTTCGGTGCCCAGG 61.048 66.667 0.00 0.00 0.00 4.45
65 66 2.162338 TAGGTCGTTTCGGTGCCCAG 62.162 60.000 0.00 0.00 0.00 4.45
66 67 2.208619 TAGGTCGTTTCGGTGCCCA 61.209 57.895 0.00 0.00 0.00 5.36
67 68 1.739196 GTAGGTCGTTTCGGTGCCC 60.739 63.158 0.00 0.00 0.00 5.36
68 69 0.735287 GAGTAGGTCGTTTCGGTGCC 60.735 60.000 0.00 0.00 0.00 5.01
69 70 1.069378 CGAGTAGGTCGTTTCGGTGC 61.069 60.000 0.00 0.00 44.20 5.01
70 71 3.011513 CGAGTAGGTCGTTTCGGTG 57.988 57.895 0.00 0.00 44.20 4.94
79 80 2.479219 GGGACGATTTGACGAGTAGGTC 60.479 54.545 0.00 0.00 37.45 3.85
80 81 1.475682 GGGACGATTTGACGAGTAGGT 59.524 52.381 0.00 0.00 37.03 3.08
81 82 1.749634 AGGGACGATTTGACGAGTAGG 59.250 52.381 0.00 0.00 37.03 3.18
82 83 4.832590 ATAGGGACGATTTGACGAGTAG 57.167 45.455 0.00 0.00 37.03 2.57
83 84 5.587388 AAATAGGGACGATTTGACGAGTA 57.413 39.130 0.00 0.00 41.83 2.59
84 85 4.467198 AAATAGGGACGATTTGACGAGT 57.533 40.909 0.00 0.00 41.83 4.18
85 86 5.050972 GCTAAAATAGGGACGATTTGACGAG 60.051 44.000 0.00 0.00 42.54 4.18
86 87 4.807304 GCTAAAATAGGGACGATTTGACGA 59.193 41.667 0.00 0.00 42.54 4.20
87 88 4.809426 AGCTAAAATAGGGACGATTTGACG 59.191 41.667 0.00 0.00 42.54 4.35
88 89 5.815740 TCAGCTAAAATAGGGACGATTTGAC 59.184 40.000 0.00 0.00 42.54 3.18
89 90 5.984725 TCAGCTAAAATAGGGACGATTTGA 58.015 37.500 0.00 0.00 42.54 2.69
90 91 6.677781 TTCAGCTAAAATAGGGACGATTTG 57.322 37.500 0.00 0.00 42.54 2.32
91 92 7.881775 ATTTCAGCTAAAATAGGGACGATTT 57.118 32.000 0.00 0.00 45.12 2.17
92 93 8.608844 CTATTTCAGCTAAAATAGGGACGATT 57.391 34.615 18.36 0.00 42.00 3.34
107 108 8.362639 CCAACAATATAAATGCCTATTTCAGCT 58.637 33.333 0.00 0.00 37.64 4.24
108 109 8.359642 TCCAACAATATAAATGCCTATTTCAGC 58.640 33.333 0.00 0.00 37.64 4.26
109 110 9.683069 GTCCAACAATATAAATGCCTATTTCAG 57.317 33.333 0.00 0.00 37.64 3.02
110 111 9.420118 AGTCCAACAATATAAATGCCTATTTCA 57.580 29.630 0.00 0.00 37.64 2.69
111 112 9.683069 CAGTCCAACAATATAAATGCCTATTTC 57.317 33.333 0.00 0.00 37.64 2.17
112 113 9.420118 TCAGTCCAACAATATAAATGCCTATTT 57.580 29.630 0.00 0.00 39.69 1.40
113 114 8.995027 TCAGTCCAACAATATAAATGCCTATT 57.005 30.769 0.00 0.00 0.00 1.73
114 115 9.017509 CATCAGTCCAACAATATAAATGCCTAT 57.982 33.333 0.00 0.00 0.00 2.57
115 116 7.448161 CCATCAGTCCAACAATATAAATGCCTA 59.552 37.037 0.00 0.00 0.00 3.93
116 117 6.266103 CCATCAGTCCAACAATATAAATGCCT 59.734 38.462 0.00 0.00 0.00 4.75
117 118 6.265196 TCCATCAGTCCAACAATATAAATGCC 59.735 38.462 0.00 0.00 0.00 4.40
118 119 7.013655 ACTCCATCAGTCCAACAATATAAATGC 59.986 37.037 0.00 0.00 0.00 3.56
119 120 8.347771 CACTCCATCAGTCCAACAATATAAATG 58.652 37.037 0.00 0.00 30.26 2.32
120 121 8.274322 TCACTCCATCAGTCCAACAATATAAAT 58.726 33.333 0.00 0.00 30.26 1.40
121 122 7.629157 TCACTCCATCAGTCCAACAATATAAA 58.371 34.615 0.00 0.00 30.26 1.40
122 123 7.194112 TCACTCCATCAGTCCAACAATATAA 57.806 36.000 0.00 0.00 30.26 0.98
123 124 6.806668 TCACTCCATCAGTCCAACAATATA 57.193 37.500 0.00 0.00 30.26 0.86
124 125 5.698741 TCACTCCATCAGTCCAACAATAT 57.301 39.130 0.00 0.00 30.26 1.28
185 186 0.549469 AAACTGGAAAGGGTGGACGT 59.451 50.000 0.00 0.00 0.00 4.34
228 239 6.773685 AGCTAAGTTACTCCCACTATGACTAG 59.226 42.308 0.00 0.00 0.00 2.57
229 240 6.670617 AGCTAAGTTACTCCCACTATGACTA 58.329 40.000 0.00 0.00 0.00 2.59
233 244 6.963083 ACTAGCTAAGTTACTCCCACTATG 57.037 41.667 0.00 0.00 33.35 2.23
238 249 9.240734 GCTATATTACTAGCTAAGTTACTCCCA 57.759 37.037 0.00 0.00 40.79 4.37
239 250 8.397148 CGCTATATTACTAGCTAAGTTACTCCC 58.603 40.741 0.00 0.00 41.61 4.30
240 251 7.909641 GCGCTATATTACTAGCTAAGTTACTCC 59.090 40.741 0.00 0.00 41.61 3.85
241 252 8.449397 TGCGCTATATTACTAGCTAAGTTACTC 58.551 37.037 9.73 0.00 41.61 2.59
242 253 8.235905 GTGCGCTATATTACTAGCTAAGTTACT 58.764 37.037 9.73 0.00 41.61 2.24
243 254 8.235905 AGTGCGCTATATTACTAGCTAAGTTAC 58.764 37.037 9.73 0.00 41.61 2.50
244 255 8.332996 AGTGCGCTATATTACTAGCTAAGTTA 57.667 34.615 9.73 0.00 41.61 2.24
245 256 7.216973 AGTGCGCTATATTACTAGCTAAGTT 57.783 36.000 9.73 0.00 41.61 2.66
247 258 9.622004 TTAAAGTGCGCTATATTACTAGCTAAG 57.378 33.333 9.73 0.00 41.61 2.18
248 259 9.622004 CTTAAAGTGCGCTATATTACTAGCTAA 57.378 33.333 9.73 1.44 41.61 3.09
249 260 9.006839 TCTTAAAGTGCGCTATATTACTAGCTA 57.993 33.333 9.73 0.00 41.61 3.32
259 270 8.026607 AGCAAAATTTTCTTAAAGTGCGCTATA 58.973 29.630 9.73 0.00 35.90 1.31
260 271 6.868339 AGCAAAATTTTCTTAAAGTGCGCTAT 59.132 30.769 9.73 0.00 35.90 2.97
261 272 6.212955 AGCAAAATTTTCTTAAAGTGCGCTA 58.787 32.000 9.73 0.00 35.90 4.26
262 273 5.049828 AGCAAAATTTTCTTAAAGTGCGCT 58.950 33.333 9.73 0.00 35.90 5.92
263 274 5.328886 AGCAAAATTTTCTTAAAGTGCGC 57.671 34.783 0.00 0.00 35.90 6.09
264 275 9.862585 AAATAAGCAAAATTTTCTTAAAGTGCG 57.137 25.926 18.35 1.87 35.90 5.34
269 280 9.943163 GTGCCAAATAAGCAAAATTTTCTTAAA 57.057 25.926 18.35 7.15 43.02 1.52
270 281 8.279103 CGTGCCAAATAAGCAAAATTTTCTTAA 58.721 29.630 18.35 8.98 43.02 1.85
271 282 7.439655 ACGTGCCAAATAAGCAAAATTTTCTTA 59.560 29.630 17.47 17.47 43.02 2.10
272 283 6.259829 ACGTGCCAAATAAGCAAAATTTTCTT 59.740 30.769 15.30 15.30 43.02 2.52
273 284 5.757808 ACGTGCCAAATAAGCAAAATTTTCT 59.242 32.000 0.00 0.00 43.02 2.52
274 285 5.984627 ACGTGCCAAATAAGCAAAATTTTC 58.015 33.333 0.00 0.00 43.02 2.29
275 286 6.704050 ACTACGTGCCAAATAAGCAAAATTTT 59.296 30.769 0.00 0.00 43.02 1.82
276 287 6.220201 ACTACGTGCCAAATAAGCAAAATTT 58.780 32.000 0.00 0.00 43.02 1.82
277 288 5.778862 ACTACGTGCCAAATAAGCAAAATT 58.221 33.333 0.00 0.00 43.02 1.82
278 289 5.385509 ACTACGTGCCAAATAAGCAAAAT 57.614 34.783 0.00 0.00 43.02 1.82
279 290 4.839668 ACTACGTGCCAAATAAGCAAAA 57.160 36.364 0.00 0.00 43.02 2.44
280 291 4.839668 AACTACGTGCCAAATAAGCAAA 57.160 36.364 0.00 0.00 43.02 3.68
281 292 5.943706 TTAACTACGTGCCAAATAAGCAA 57.056 34.783 0.00 0.00 43.02 3.91
282 293 5.644206 TCATTAACTACGTGCCAAATAAGCA 59.356 36.000 0.00 0.00 38.08 3.91
283 294 6.036735 TCTCATTAACTACGTGCCAAATAAGC 59.963 38.462 0.00 0.00 0.00 3.09
284 295 7.534085 TCTCATTAACTACGTGCCAAATAAG 57.466 36.000 0.00 0.00 0.00 1.73
285 296 7.604927 ACTTCTCATTAACTACGTGCCAAATAA 59.395 33.333 0.00 0.00 0.00 1.40
286 297 7.064134 CACTTCTCATTAACTACGTGCCAAATA 59.936 37.037 0.00 0.00 0.00 1.40
287 298 5.938125 ACTTCTCATTAACTACGTGCCAAAT 59.062 36.000 0.00 0.00 0.00 2.32
288 299 5.178623 CACTTCTCATTAACTACGTGCCAAA 59.821 40.000 0.00 0.00 0.00 3.28
289 300 4.688879 CACTTCTCATTAACTACGTGCCAA 59.311 41.667 0.00 0.00 0.00 4.52
290 301 4.242475 CACTTCTCATTAACTACGTGCCA 58.758 43.478 0.00 0.00 0.00 4.92
291 302 3.617263 CCACTTCTCATTAACTACGTGCC 59.383 47.826 0.00 0.00 0.00 5.01
292 303 4.243270 ACCACTTCTCATTAACTACGTGC 58.757 43.478 0.00 0.00 0.00 5.34
293 304 6.864685 TGTTACCACTTCTCATTAACTACGTG 59.135 38.462 0.00 0.00 0.00 4.49
294 305 6.985117 TGTTACCACTTCTCATTAACTACGT 58.015 36.000 0.00 0.00 0.00 3.57
295 306 9.234384 CTATGTTACCACTTCTCATTAACTACG 57.766 37.037 0.00 0.00 0.00 3.51
296 307 9.032420 GCTATGTTACCACTTCTCATTAACTAC 57.968 37.037 0.00 0.00 0.00 2.73
297 308 7.919091 CGCTATGTTACCACTTCTCATTAACTA 59.081 37.037 0.00 0.00 0.00 2.24
298 309 6.757010 CGCTATGTTACCACTTCTCATTAACT 59.243 38.462 0.00 0.00 0.00 2.24
299 310 6.509677 GCGCTATGTTACCACTTCTCATTAAC 60.510 42.308 0.00 0.00 0.00 2.01
300 311 5.522460 GCGCTATGTTACCACTTCTCATTAA 59.478 40.000 0.00 0.00 0.00 1.40
301 312 5.047847 GCGCTATGTTACCACTTCTCATTA 58.952 41.667 0.00 0.00 0.00 1.90
302 313 3.871594 GCGCTATGTTACCACTTCTCATT 59.128 43.478 0.00 0.00 0.00 2.57
303 314 3.133003 AGCGCTATGTTACCACTTCTCAT 59.867 43.478 8.99 0.00 0.00 2.90
304 315 2.496070 AGCGCTATGTTACCACTTCTCA 59.504 45.455 8.99 0.00 0.00 3.27
305 316 3.166489 AGCGCTATGTTACCACTTCTC 57.834 47.619 8.99 0.00 0.00 2.87
306 317 3.611766 AAGCGCTATGTTACCACTTCT 57.388 42.857 12.05 0.00 0.00 2.85
307 318 3.063588 GGAAAGCGCTATGTTACCACTTC 59.936 47.826 12.05 6.46 0.00 3.01
308 319 3.007635 GGAAAGCGCTATGTTACCACTT 58.992 45.455 12.05 0.00 0.00 3.16
309 320 2.027561 TGGAAAGCGCTATGTTACCACT 60.028 45.455 12.05 0.00 0.00 4.00
310 321 2.352388 TGGAAAGCGCTATGTTACCAC 58.648 47.619 12.05 0.00 0.00 4.16
311 322 2.772077 TGGAAAGCGCTATGTTACCA 57.228 45.000 12.05 11.44 0.00 3.25
312 323 3.063588 GTCTTGGAAAGCGCTATGTTACC 59.936 47.826 12.05 8.83 45.70 2.85
313 324 3.682858 TGTCTTGGAAAGCGCTATGTTAC 59.317 43.478 12.05 2.15 45.70 2.50
314 325 3.932822 TGTCTTGGAAAGCGCTATGTTA 58.067 40.909 12.05 0.00 45.70 2.41
315 326 2.778299 TGTCTTGGAAAGCGCTATGTT 58.222 42.857 12.05 0.00 45.70 2.71
316 327 2.472695 TGTCTTGGAAAGCGCTATGT 57.527 45.000 12.05 0.00 45.70 2.29
317 328 3.002791 TCTTGTCTTGGAAAGCGCTATG 58.997 45.455 12.05 0.00 45.70 2.23
318 329 3.334583 TCTTGTCTTGGAAAGCGCTAT 57.665 42.857 12.05 0.00 45.70 2.97
319 330 2.831685 TCTTGTCTTGGAAAGCGCTA 57.168 45.000 12.05 0.00 45.70 4.26
320 331 1.808945 CATCTTGTCTTGGAAAGCGCT 59.191 47.619 2.64 2.64 45.70 5.92
321 332 1.806542 TCATCTTGTCTTGGAAAGCGC 59.193 47.619 0.00 0.00 45.70 5.92
322 333 3.070018 ACTCATCTTGTCTTGGAAAGCG 58.930 45.455 0.00 0.00 45.70 4.68
323 334 4.322567 AGACTCATCTTGTCTTGGAAAGC 58.677 43.478 0.00 0.00 45.70 3.51
324 335 6.459066 TGTAGACTCATCTTGTCTTGGAAAG 58.541 40.000 1.67 0.00 41.45 2.62
325 336 6.419484 TGTAGACTCATCTTGTCTTGGAAA 57.581 37.500 1.67 0.00 41.45 3.13
326 337 6.419484 TTGTAGACTCATCTTGTCTTGGAA 57.581 37.500 1.67 0.00 41.45 3.53
327 338 5.567623 GCTTGTAGACTCATCTTGTCTTGGA 60.568 44.000 1.67 0.00 41.45 3.53
328 339 4.629200 GCTTGTAGACTCATCTTGTCTTGG 59.371 45.833 1.67 0.00 41.45 3.61
329 340 5.477510 AGCTTGTAGACTCATCTTGTCTTG 58.522 41.667 1.67 0.00 41.45 3.02
330 341 5.736951 AGCTTGTAGACTCATCTTGTCTT 57.263 39.130 1.67 0.00 41.45 3.01
331 342 6.842437 TTAGCTTGTAGACTCATCTTGTCT 57.158 37.500 0.00 0.00 45.48 3.41
332 343 9.587772 TTTATTAGCTTGTAGACTCATCTTGTC 57.412 33.333 0.00 0.00 36.29 3.18
339 350 9.944376 AACTTCATTTATTAGCTTGTAGACTCA 57.056 29.630 0.00 0.00 0.00 3.41
357 368 9.469097 AGTAGTAGTGTCATAGAGAACTTCATT 57.531 33.333 0.00 0.00 0.00 2.57
361 372 9.908747 ACATAGTAGTAGTGTCATAGAGAACTT 57.091 33.333 0.00 0.00 0.00 2.66
362 373 9.908747 AACATAGTAGTAGTGTCATAGAGAACT 57.091 33.333 0.00 0.00 0.00 3.01
423 434 9.596308 ACACTGGGGAGTAACTTAAAATAAAAT 57.404 29.630 0.00 0.00 0.00 1.82
424 435 8.852135 CACACTGGGGAGTAACTTAAAATAAAA 58.148 33.333 0.00 0.00 0.00 1.52
425 436 8.219178 TCACACTGGGGAGTAACTTAAAATAAA 58.781 33.333 0.00 0.00 0.00 1.40
426 437 7.662669 GTCACACTGGGGAGTAACTTAAAATAA 59.337 37.037 0.00 0.00 0.00 1.40
427 438 7.163441 GTCACACTGGGGAGTAACTTAAAATA 58.837 38.462 0.00 0.00 0.00 1.40
428 439 6.002082 GTCACACTGGGGAGTAACTTAAAAT 58.998 40.000 0.00 0.00 0.00 1.82
429 440 5.370679 GTCACACTGGGGAGTAACTTAAAA 58.629 41.667 0.00 0.00 0.00 1.52
430 441 4.202388 GGTCACACTGGGGAGTAACTTAAA 60.202 45.833 0.00 0.00 0.00 1.52
431 442 3.325716 GGTCACACTGGGGAGTAACTTAA 59.674 47.826 0.00 0.00 0.00 1.85
432 443 2.901839 GGTCACACTGGGGAGTAACTTA 59.098 50.000 0.00 0.00 0.00 2.24
433 444 1.697982 GGTCACACTGGGGAGTAACTT 59.302 52.381 0.00 0.00 0.00 2.66
434 445 1.349067 GGTCACACTGGGGAGTAACT 58.651 55.000 0.00 0.00 0.00 2.24
435 446 1.002087 CTGGTCACACTGGGGAGTAAC 59.998 57.143 0.00 0.00 0.00 2.50
436 447 1.348064 CTGGTCACACTGGGGAGTAA 58.652 55.000 0.00 0.00 0.00 2.24
437 448 1.192146 GCTGGTCACACTGGGGAGTA 61.192 60.000 0.00 0.00 0.00 2.59
438 449 2.520536 GCTGGTCACACTGGGGAGT 61.521 63.158 0.00 0.00 0.00 3.85
439 450 2.348998 GCTGGTCACACTGGGGAG 59.651 66.667 0.00 0.00 0.00 4.30
440 451 3.249189 GGCTGGTCACACTGGGGA 61.249 66.667 0.00 0.00 0.00 4.81
441 452 3.252284 AGGCTGGTCACACTGGGG 61.252 66.667 0.00 0.00 0.00 4.96
442 453 2.348998 GAGGCTGGTCACACTGGG 59.651 66.667 0.00 0.00 0.00 4.45
443 454 1.302033 GTGAGGCTGGTCACACTGG 60.302 63.158 0.00 0.00 45.34 4.00
444 455 2.738213 GGGTGAGGCTGGTCACACTG 62.738 65.000 13.84 0.00 45.87 3.66
445 456 2.520536 GGGTGAGGCTGGTCACACT 61.521 63.158 13.84 0.00 45.87 3.55
448 459 3.311110 TCGGGTGAGGCTGGTCAC 61.311 66.667 0.00 0.00 45.30 3.67
449 460 3.311110 GTCGGGTGAGGCTGGTCA 61.311 66.667 0.00 0.00 0.00 4.02
450 461 4.436998 CGTCGGGTGAGGCTGGTC 62.437 72.222 0.00 0.00 0.00 4.02
586 599 1.078823 ACACATACAGACCAGGAGGGA 59.921 52.381 0.00 0.00 41.15 4.20
725 773 4.072839 CAGGACTAAGTTTCTTCAACCCC 58.927 47.826 0.00 0.00 35.77 4.95
747 795 9.974750 GCTGAGTACACTTTAAAACATCTAATC 57.025 33.333 0.00 0.00 0.00 1.75
751 799 7.801716 TTGCTGAGTACACTTTAAAACATCT 57.198 32.000 0.00 0.00 0.00 2.90
753 801 9.463443 GAATTTGCTGAGTACACTTTAAAACAT 57.537 29.630 0.00 0.00 0.00 2.71
754 802 8.462811 TGAATTTGCTGAGTACACTTTAAAACA 58.537 29.630 0.00 0.00 0.00 2.83
756 804 9.462174 CATGAATTTGCTGAGTACACTTTAAAA 57.538 29.630 0.00 0.00 0.00 1.52
757 805 8.629158 ACATGAATTTGCTGAGTACACTTTAAA 58.371 29.630 0.00 0.00 0.00 1.52
760 808 6.294176 GGACATGAATTTGCTGAGTACACTTT 60.294 38.462 0.00 0.00 0.00 2.66
761 809 5.182001 GGACATGAATTTGCTGAGTACACTT 59.818 40.000 0.00 0.00 0.00 3.16
762 810 4.697352 GGACATGAATTTGCTGAGTACACT 59.303 41.667 0.00 0.00 0.00 3.55
764 812 4.650734 TGGACATGAATTTGCTGAGTACA 58.349 39.130 0.00 0.00 0.00 2.90
767 815 5.733620 AATTGGACATGAATTTGCTGAGT 57.266 34.783 0.00 0.00 0.00 3.41
772 825 3.181518 CGCCAAATTGGACATGAATTTGC 60.182 43.478 17.47 14.69 44.29 3.68
814 867 1.452833 GGCTCCACCAAGATCCAGC 60.453 63.158 0.00 0.00 38.86 4.85
848 980 3.318191 CTCCAGAAGCAGGGAGGG 58.682 66.667 0.00 0.00 45.62 4.30
859 1000 1.478654 GGGACCAAACAAAGCTCCAGA 60.479 52.381 0.00 0.00 0.00 3.86
877 1018 5.482163 TTTTGCCTTCTAATTTTCCTGGG 57.518 39.130 0.00 0.00 0.00 4.45
901 1043 7.014518 TCGACAGGATTAAAACTCGGGATAATA 59.985 37.037 0.00 0.00 0.00 0.98
934 1076 1.001860 CACCAAATGGGGCAATTCGTT 59.998 47.619 4.17 0.00 42.91 3.85
936 1078 0.108233 CCACCAAATGGGGCAATTCG 60.108 55.000 4.17 0.00 45.95 3.34
1053 1195 6.625740 GCAACTCTAAATTATTTGGCTGCTGA 60.626 38.462 0.00 0.00 0.00 4.26
1088 1230 2.896044 TCCCTAGCTGCATCTATCACTG 59.104 50.000 1.02 0.00 0.00 3.66
1156 1298 3.075005 CCGGAAGCTCTCCCCGAA 61.075 66.667 15.44 0.00 45.58 4.30
1157 1299 3.899545 AACCGGAAGCTCTCCCCGA 62.900 63.158 9.46 0.00 45.58 5.14
1371 1516 0.323629 TGGGGTTCTTCACATCCGTC 59.676 55.000 0.00 0.00 0.00 4.79
1380 1537 4.415783 ACCGCATTGGGGTTCTTC 57.584 55.556 18.96 0.00 46.84 2.87
1389 1546 1.202463 TCAACCAAACCAACCGCATTG 60.202 47.619 0.00 0.00 38.12 2.82
1390 1547 1.115467 TCAACCAAACCAACCGCATT 58.885 45.000 0.00 0.00 0.00 3.56
1391 1548 1.068434 CTTCAACCAAACCAACCGCAT 59.932 47.619 0.00 0.00 0.00 4.73
1392 1549 0.457851 CTTCAACCAAACCAACCGCA 59.542 50.000 0.00 0.00 0.00 5.69
1393 1550 0.741915 TCTTCAACCAAACCAACCGC 59.258 50.000 0.00 0.00 0.00 5.68
1394 1551 2.294074 TCTCTTCAACCAAACCAACCG 58.706 47.619 0.00 0.00 0.00 4.44
1400 1557 4.557496 GCACCTTCATCTCTTCAACCAAAC 60.557 45.833 0.00 0.00 0.00 2.93
1500 1657 2.692368 GGAGGGAGGGATGCACCA 60.692 66.667 7.49 0.00 41.20 4.17
1518 1675 3.443045 GGACTGCCATTGCCACCG 61.443 66.667 0.00 0.00 36.33 4.94
1519 1676 2.036256 AGGACTGCCATTGCCACC 59.964 61.111 0.00 0.00 36.33 4.61
1536 1693 2.029518 CTGTCACTGCCGCTGTGA 59.970 61.111 24.44 24.44 39.36 3.58
1576 1733 2.750637 GCAGCTGTGCCTGATGCT 60.751 61.111 16.64 0.00 44.72 3.79
1610 1767 0.816825 CTCACTGGCAATGGATCCGG 60.817 60.000 7.39 0.00 34.90 5.14
1704 1861 4.742201 TGGCTCGCGCTGGTCTTC 62.742 66.667 5.56 0.00 36.09 2.87
1747 1904 2.243957 TGACGTTGTTGCTCCAGCG 61.244 57.895 9.96 9.96 45.83 5.18
1785 1942 3.670377 GGGTCGTTGCCCTTGTGC 61.670 66.667 5.46 0.00 45.22 4.57
1941 2116 0.612744 TGTCCATCACCTTCATCGCA 59.387 50.000 0.00 0.00 0.00 5.10
2037 2212 0.838987 TGTACAGGGTGGGGAGGAAC 60.839 60.000 0.00 0.00 0.00 3.62
2218 2429 7.511959 AGAGCACACGATACTAAGATATCAA 57.488 36.000 5.32 0.00 31.98 2.57
2229 2440 6.837992 TCCAAAATTAAAGAGCACACGATAC 58.162 36.000 0.00 0.00 0.00 2.24
2230 2441 7.441890 TTCCAAAATTAAAGAGCACACGATA 57.558 32.000 0.00 0.00 0.00 2.92
2231 2442 5.957842 TCCAAAATTAAAGAGCACACGAT 57.042 34.783 0.00 0.00 0.00 3.73
2234 2445 7.653311 ACTGAATTCCAAAATTAAAGAGCACAC 59.347 33.333 2.27 0.00 35.21 3.82
2238 2449 9.346725 CTACACTGAATTCCAAAATTAAAGAGC 57.653 33.333 2.27 0.00 35.21 4.09
2313 2527 6.452494 TTGATGAAGGCAGAGTACTACTAC 57.548 41.667 0.00 0.00 0.00 2.73
2316 2530 8.718102 TTATTTTGATGAAGGCAGAGTACTAC 57.282 34.615 0.00 0.00 0.00 2.73
2319 2533 7.617041 ACTTATTTTGATGAAGGCAGAGTAC 57.383 36.000 0.00 0.00 0.00 2.73
2320 2534 7.064609 CGAACTTATTTTGATGAAGGCAGAGTA 59.935 37.037 0.00 0.00 0.00 2.59
2327 2644 9.282247 CATTTCTCGAACTTATTTTGATGAAGG 57.718 33.333 0.00 0.00 0.00 3.46
2331 2648 9.490663 GTACCATTTCTCGAACTTATTTTGATG 57.509 33.333 0.00 0.00 0.00 3.07
2342 2659 4.755411 TCCTCATGTACCATTTCTCGAAC 58.245 43.478 0.00 0.00 0.00 3.95
2436 2775 3.821421 AAGAATCAGGGACCGTATGTC 57.179 47.619 0.00 0.00 43.67 3.06
2498 2837 7.081976 TGCTGTAACTGTACTATATATGCACG 58.918 38.462 0.00 0.00 0.00 5.34
2505 2844 7.653713 GCTGTTCATGCTGTAACTGTACTATAT 59.346 37.037 0.00 0.00 0.00 0.86
2506 2845 6.978659 GCTGTTCATGCTGTAACTGTACTATA 59.021 38.462 0.00 0.00 0.00 1.31
2507 2846 5.812642 GCTGTTCATGCTGTAACTGTACTAT 59.187 40.000 0.00 0.00 0.00 2.12
2527 2866 1.106351 TCGGTTGTTTGCCATGCTGT 61.106 50.000 0.00 0.00 0.00 4.40
2532 2871 0.244450 CATGCTCGGTTGTTTGCCAT 59.756 50.000 0.00 0.00 0.00 4.40
2545 2884 5.910637 TTGAAACAAAATTGAGCATGCTC 57.089 34.783 35.76 35.76 43.01 4.26
2583 2922 8.543862 TTAAACAGATGATGATGCTAGCATAG 57.456 34.615 29.64 13.82 43.09 2.23
2584 2923 8.907222 TTTAAACAGATGATGATGCTAGCATA 57.093 30.769 29.64 15.07 36.70 3.14
2585 2924 7.501559 ACTTTAAACAGATGATGATGCTAGCAT 59.498 33.333 29.97 29.97 39.69 3.79
2586 2925 6.825213 ACTTTAAACAGATGATGATGCTAGCA 59.175 34.615 21.85 21.85 0.00 3.49
2587 2926 7.256756 ACTTTAAACAGATGATGATGCTAGC 57.743 36.000 8.10 8.10 0.00 3.42
2594 2933 8.609176 GCGGTAATTACTTTAAACAGATGATGA 58.391 33.333 15.05 0.00 0.00 2.92
2599 2938 6.598064 AGCAGCGGTAATTACTTTAAACAGAT 59.402 34.615 15.05 0.00 0.00 2.90
2606 2945 7.067372 TCAGTACTAGCAGCGGTAATTACTTTA 59.933 37.037 15.05 0.10 0.00 1.85
2650 2996 2.234908 CCGGAAGAGAGAATCCAGTGTT 59.765 50.000 0.00 0.00 35.34 3.32
2766 3141 2.901042 GGCTTCAGGTCCCGGTAG 59.099 66.667 0.00 0.00 0.00 3.18
3108 3572 1.536662 GATCTCCGGGGCCAGGTAT 60.537 63.158 22.56 16.48 0.00 2.73
3522 3995 4.796231 CCGGACTTCACCTCGGCG 62.796 72.222 0.00 0.00 35.95 6.46
3524 3997 4.796231 CGCCGGACTTCACCTCGG 62.796 72.222 5.05 0.00 44.70 4.63
3580 4053 4.153411 TGAAAAGGAAAATAAAGGGCCGA 58.847 39.130 0.00 0.00 0.00 5.54
3605 4078 0.179089 CGAATCAGAGCCAGGGACAG 60.179 60.000 0.00 0.00 0.00 3.51
3655 4128 3.515104 CCCTGGTTTCCATGCTGTATTTT 59.485 43.478 0.00 0.00 30.82 1.82
3659 4132 0.323360 GCCCTGGTTTCCATGCTGTA 60.323 55.000 0.00 0.00 30.82 2.74
3661 4134 1.601419 CTGCCCTGGTTTCCATGCTG 61.601 60.000 10.27 7.18 33.93 4.41
3662 4135 1.304713 CTGCCCTGGTTTCCATGCT 60.305 57.895 10.27 0.00 33.93 3.79
3663 4136 2.353610 CCTGCCCTGGTTTCCATGC 61.354 63.158 0.00 4.29 33.57 4.06
3669 4143 3.269381 TGATAAATCTCCTGCCCTGGTTT 59.731 43.478 0.00 0.00 0.00 3.27
3773 4344 6.360947 CGAGTGTTGTGATAGGAATAAGATCG 59.639 42.308 0.00 0.00 0.00 3.69
3798 4369 3.141767 ACCCCAGTCAGTCTAAAAAGC 57.858 47.619 0.00 0.00 0.00 3.51
3811 4382 7.310983 CCAAAATTGGTCATATAAAACCCCAGT 60.311 37.037 3.95 0.00 43.43 4.00
3900 4471 2.713531 GATGTGTGGGGGTGGCAAGT 62.714 60.000 0.00 0.00 0.00 3.16
3950 4608 6.761714 ACCACAGATTAGGCTAAAAATAGTCG 59.238 38.462 11.59 2.18 0.00 4.18
3956 4614 5.007682 GTCCACCACAGATTAGGCTAAAAA 58.992 41.667 11.59 0.00 0.00 1.94
3957 4615 4.288626 AGTCCACCACAGATTAGGCTAAAA 59.711 41.667 11.59 0.00 0.00 1.52
4009 4667 0.101579 TGACGAAATCGCGGCTGATA 59.898 50.000 6.13 0.00 44.43 2.15
4069 4727 0.603975 GGCCTCAGCGAACTGTTTCT 60.604 55.000 0.00 0.00 44.77 2.52
4099 4757 3.434637 CAAGGGTTTATTTGCGAATCGG 58.565 45.455 4.35 0.00 0.00 4.18
4112 4770 0.758734 GAAAGGCAAGGCAAGGGTTT 59.241 50.000 0.00 0.00 0.00 3.27
4197 4858 2.148446 TTCTGGCATCATTTCCCCTG 57.852 50.000 0.00 0.00 0.00 4.45
4202 4863 2.957006 AGAGGCATTCTGGCATCATTTC 59.043 45.455 2.62 0.00 46.34 2.17
4475 5137 6.241645 TCTCTCTAGTTTGACATGTCTCTCA 58.758 40.000 25.55 4.05 0.00 3.27
4478 5140 6.972328 GTGATCTCTCTAGTTTGACATGTCTC 59.028 42.308 25.55 15.62 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.